Query 048258
Match_columns 504
No_of_seqs 656 out of 2187
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 07:50:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.8E-70 4E-75 533.3 61.5 493 3-501 398-916 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9E-70 2E-74 528.4 62.2 492 5-500 365-882 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 3E-67 6.6E-72 521.2 51.3 469 5-491 182-651 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.5E-67 5.5E-72 521.7 50.0 481 3-500 114-625 (857)
5 PLN03081 pentatricopeptide (PP 100.0 5.7E-65 1.2E-69 493.2 53.4 477 6-499 83-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 5.7E-63 1.2E-67 479.2 48.2 479 5-500 118-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.5E-33 9.7E-38 284.6 60.1 463 15-492 436-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.4E-32 9.6E-37 277.3 60.6 475 8-496 361-868 (899)
9 PRK11447 cellulose synthase su 100.0 7.3E-25 1.6E-29 223.9 60.0 476 14-498 116-745 (1157)
10 PRK11447 cellulose synthase su 100.0 2.1E-24 4.6E-29 220.5 60.8 477 8-495 60-701 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 1.6E-24 3.4E-29 188.9 37.3 448 14-478 52-503 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.7E-23 3.8E-28 182.4 35.0 407 17-440 89-500 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.3E-20 2.8E-25 184.4 55.9 230 256-495 478-707 (987)
14 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-21 6.8E-26 185.5 51.2 429 13-459 130-571 (615)
15 TIGR00990 3a0801s09 mitochondr 99.9 7.7E-21 1.7E-25 182.8 50.9 431 48-495 130-572 (615)
16 PRK11788 tetratricopeptide rep 99.9 5.5E-22 1.2E-26 181.5 35.2 298 196-500 46-353 (389)
17 PRK15174 Vi polysaccharide exp 99.9 2.3E-20 5.1E-25 178.6 44.9 332 14-355 46-382 (656)
18 PRK11788 tetratricopeptide rep 99.9 1.5E-21 3.3E-26 178.6 35.4 298 127-431 47-354 (389)
19 PRK10049 pgaA outer membrane p 99.9 1E-19 2.2E-24 178.2 49.5 419 14-475 19-470 (765)
20 PRK15174 Vi polysaccharide exp 99.9 6.1E-20 1.3E-24 175.8 45.9 361 19-389 14-381 (656)
21 PRK10049 pgaA outer membrane p 99.9 2.6E-19 5.7E-24 175.3 50.9 392 8-433 47-463 (765)
22 KOG2002 TPR-containing nuclear 99.9 8.1E-20 1.8E-24 167.9 43.5 445 8-459 268-745 (1018)
23 PRK09782 bacteriophage N4 rece 99.9 1.1E-18 2.3E-23 171.1 54.2 469 8-495 179-741 (987)
24 KOG2002 TPR-containing nuclear 99.9 1.2E-19 2.6E-24 166.8 43.2 445 44-495 269-746 (1018)
25 PRK14574 hmsH outer membrane p 99.9 4.8E-18 1E-22 163.1 52.2 440 17-469 41-521 (822)
26 PRK14574 hmsH outer membrane p 99.9 9.3E-18 2E-22 161.2 54.0 431 53-495 42-514 (822)
27 KOG2003 TPR repeat-containing 99.9 8.7E-19 1.9E-23 148.0 29.4 461 10-480 201-709 (840)
28 KOG0495 HAT repeat protein [RN 99.9 2.3E-15 4.9E-20 133.2 49.3 461 19-494 385-880 (913)
29 KOG0495 HAT repeat protein [RN 99.8 5.8E-15 1.3E-19 130.6 47.4 443 18-472 414-892 (913)
30 KOG1915 Cell cycle control pro 99.8 7.8E-15 1.7E-19 125.0 46.2 471 9-493 72-584 (677)
31 KOG4422 Uncharacterized conser 99.8 1.3E-15 2.7E-20 128.1 40.4 343 113-461 205-592 (625)
32 KOG2076 RNA polymerase III tra 99.8 4.1E-15 8.9E-20 136.5 46.7 482 8-494 137-695 (895)
33 KOG1915 Cell cycle control pro 99.8 1.3E-14 2.8E-19 123.7 43.9 445 42-498 70-540 (677)
34 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.3E-19 121.7 39.8 427 47-496 118-592 (625)
35 KOG2076 RNA polymerase III tra 99.8 4.5E-14 9.7E-19 129.9 45.1 342 7-351 170-552 (895)
36 KOG0547 Translocase of outer m 99.8 1.4E-14 3.1E-19 123.9 33.8 385 49-458 119-565 (606)
37 KOG2003 TPR repeat-containing 99.8 6E-15 1.3E-19 125.1 31.1 399 88-494 209-689 (840)
38 KOG0547 Translocase of outer m 99.8 8.2E-14 1.8E-18 119.3 37.7 396 13-423 118-565 (606)
39 KOG3785 Uncharacterized conser 99.8 1E-13 2.2E-18 114.0 35.6 457 17-503 29-499 (557)
40 PRK10747 putative protoheme IX 99.8 1.9E-14 4.2E-19 130.2 34.7 287 198-494 97-390 (398)
41 TIGR00540 hemY_coli hemY prote 99.8 1.4E-14 3E-19 132.0 33.1 293 196-494 95-399 (409)
42 KOG1155 Anaphase-promoting com 99.7 6.8E-13 1.5E-17 113.1 40.1 365 112-493 161-535 (559)
43 PF13429 TPR_15: Tetratricopep 99.7 3.7E-17 8.1E-22 141.4 12.9 262 225-493 13-276 (280)
44 PF13429 TPR_15: Tetratricopep 99.7 5.9E-17 1.3E-21 140.2 12.0 260 15-281 13-274 (280)
45 KOG1155 Anaphase-promoting com 99.7 3.4E-12 7.5E-17 108.9 39.8 423 15-458 83-535 (559)
46 TIGR00540 hemY_coli hemY prote 99.7 7.5E-14 1.6E-18 127.2 32.2 291 161-458 95-398 (409)
47 PRK10747 putative protoheme IX 99.7 1.3E-13 2.9E-18 124.7 33.4 254 126-388 129-389 (398)
48 KOG1173 Anaphase-promoting com 99.7 1.7E-12 3.6E-17 113.6 38.0 439 9-458 15-517 (611)
49 COG2956 Predicted N-acetylgluc 99.7 4.9E-13 1.1E-17 108.6 29.3 220 58-283 48-277 (389)
50 KOG1126 DNA-binding cell divis 99.7 6.5E-14 1.4E-18 124.8 26.6 284 25-354 334-620 (638)
51 COG2956 Predicted N-acetylgluc 99.7 6.9E-13 1.5E-17 107.8 30.0 289 199-494 49-347 (389)
52 KOG2047 mRNA splicing factor [ 99.7 6.5E-11 1.4E-15 105.4 44.7 472 10-493 102-686 (835)
53 KOG1173 Anaphase-promoting com 99.7 3.3E-12 7.2E-17 111.7 36.2 425 5-440 44-532 (611)
54 KOG1126 DNA-binding cell divis 99.7 3.9E-14 8.4E-19 126.2 24.5 288 199-497 333-623 (638)
55 COG3071 HemY Uncharacterized e 99.7 2.5E-12 5.5E-17 107.8 32.6 292 163-492 97-388 (400)
56 COG3071 HemY Uncharacterized e 99.7 2.6E-12 5.6E-17 107.8 32.5 287 127-423 96-389 (400)
57 KOG1156 N-terminal acetyltrans 99.7 1.4E-10 2.9E-15 103.6 43.2 473 7-493 4-510 (700)
58 KOG2047 mRNA splicing factor [ 99.6 8.7E-10 1.9E-14 98.4 45.2 319 163-488 360-717 (835)
59 KOG4318 Bicoid mRNA stability 99.6 6.1E-12 1.3E-16 115.8 30.3 466 3-498 18-598 (1088)
60 KOG4162 Predicted calmodulin-b 99.6 8.2E-10 1.8E-14 100.8 43.0 378 111-494 319-783 (799)
61 KOG3785 Uncharacterized conser 99.6 7.1E-11 1.5E-15 97.6 31.9 415 14-458 61-489 (557)
62 KOG1156 N-terminal acetyltrans 99.6 5.3E-10 1.1E-14 99.9 39.3 433 47-496 10-470 (700)
63 KOG1129 TPR repeat-containing 99.6 4.8E-13 1E-17 108.8 18.5 231 48-284 226-458 (478)
64 KOG2376 Signal recognition par 99.6 1.9E-09 4.1E-14 95.5 40.3 222 13-252 15-256 (652)
65 KOG1174 Anaphase-promoting com 99.6 2.8E-09 6.1E-14 90.2 39.4 306 181-495 190-501 (564)
66 PF12569 NARP1: NMDA receptor- 99.5 2.5E-09 5.4E-14 98.0 42.3 293 16-317 10-332 (517)
67 PRK12370 invasion protein regu 99.5 3.8E-11 8.3E-16 113.9 29.4 269 42-320 253-536 (553)
68 KOG4162 Predicted calmodulin-b 99.5 6.8E-10 1.5E-14 101.2 34.9 431 19-459 293-783 (799)
69 TIGR02521 type_IV_pilW type IV 99.5 2.3E-11 4.9E-16 103.2 25.0 202 43-248 29-231 (234)
70 KOG4318 Bicoid mRNA stability 99.5 1.7E-10 3.6E-15 106.6 30.7 253 31-304 11-285 (1088)
71 KOG1174 Anaphase-promoting com 99.5 1.7E-08 3.8E-13 85.5 41.6 295 160-465 206-504 (564)
72 PRK12370 invasion protein regu 99.5 1E-10 2.2E-15 111.0 29.9 250 235-495 276-536 (553)
73 KOG1129 TPR repeat-containing 99.5 1.4E-11 3.1E-16 100.4 20.0 229 189-423 227-457 (478)
74 TIGR02521 type_IV_pilW type IV 99.5 7.4E-11 1.6E-15 100.0 24.9 198 292-493 33-231 (234)
75 PF12569 NARP1: NMDA receptor- 99.4 1.6E-09 3.5E-14 99.3 33.0 290 194-493 13-333 (517)
76 KOG2376 Signal recognition par 99.4 4.2E-08 9.1E-13 87.2 38.6 421 49-491 16-517 (652)
77 KOG4340 Uncharacterized conser 99.4 3.1E-09 6.6E-14 86.0 26.6 363 1-387 1-373 (459)
78 KOG4340 Uncharacterized conser 99.4 4E-09 8.7E-14 85.3 26.4 391 85-494 15-443 (459)
79 KOG1840 Kinesin light chain [C 99.4 1.3E-09 2.8E-14 98.6 26.1 205 190-422 246-477 (508)
80 COG3063 PilF Tfp pilus assembl 99.3 1.8E-09 3.9E-14 84.2 22.4 199 47-249 37-236 (250)
81 PF13041 PPR_2: PPR repeat fam 99.3 4.2E-12 9.1E-17 76.6 6.4 49 43-91 1-49 (50)
82 KOG0548 Molecular co-chaperone 99.3 1.1E-08 2.5E-13 89.7 29.6 413 17-458 9-454 (539)
83 COG3063 PilF Tfp pilus assembl 99.3 4.2E-09 9.1E-14 82.2 23.3 196 83-282 38-234 (250)
84 PRK11189 lipoprotein NlpI; Pro 99.3 7.8E-09 1.7E-13 89.8 27.1 219 24-251 40-267 (296)
85 KOG1840 Kinesin light chain [C 99.3 2.5E-09 5.5E-14 96.8 24.5 235 82-316 201-476 (508)
86 PF13041 PPR_2: PPR repeat fam 99.3 9E-12 2E-16 75.1 6.0 50 8-57 1-50 (50)
87 PRK11189 lipoprotein NlpI; Pro 99.3 7.5E-09 1.6E-13 89.9 25.7 197 10-215 64-266 (296)
88 KOG0985 Vesicle coat protein c 99.3 8E-07 1.7E-11 84.3 38.4 144 324-491 1103-1246(1666)
89 KOG0624 dsRNA-activated protei 99.2 2.5E-07 5.4E-12 76.8 31.0 317 44-389 37-370 (504)
90 KOG3617 WD40 and TPR repeat-co 99.2 6.1E-07 1.3E-11 83.2 36.1 51 445-495 1306-1360(1416)
91 cd05804 StaR_like StaR_like; a 99.2 2.5E-07 5.4E-12 83.8 34.2 93 190-283 119-214 (355)
92 cd05804 StaR_like StaR_like; a 99.2 1.8E-07 4E-12 84.7 33.4 199 11-214 7-215 (355)
93 KOG0548 Molecular co-chaperone 99.2 1.7E-07 3.7E-12 82.6 30.9 406 53-495 10-456 (539)
94 KOG1127 TPR repeat-containing 99.2 5.3E-07 1.1E-11 85.3 35.3 465 17-492 466-994 (1238)
95 PRK04841 transcriptional regul 99.1 9.3E-07 2E-11 90.8 37.6 336 159-495 383-761 (903)
96 PRK04841 transcriptional regul 99.1 8.8E-07 1.9E-11 91.0 36.6 376 13-390 344-761 (903)
97 PF04733 Coatomer_E: Coatomer 99.1 1.1E-08 2.5E-13 87.3 19.1 251 193-459 9-265 (290)
98 KOG1127 TPR repeat-containing 99.1 1.3E-06 2.9E-11 82.7 33.5 180 238-421 801-993 (1238)
99 KOG1914 mRNA cleavage and poly 99.1 4.6E-06 1E-10 73.9 43.4 432 6-446 16-526 (656)
100 KOG0624 dsRNA-activated protei 99.1 2.9E-06 6.2E-11 70.7 31.8 316 78-425 36-371 (504)
101 KOG1914 mRNA cleavage and poly 99.1 6E-06 1.3E-10 73.2 41.4 427 42-494 17-501 (656)
102 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.7E-13 87.0 17.9 150 228-388 110-264 (290)
103 KOG1125 TPR repeat-containing 99.1 6.8E-08 1.5E-12 85.8 22.5 255 226-487 291-564 (579)
104 KOG1125 TPR repeat-containing 99.1 3.8E-08 8.2E-13 87.3 20.3 222 18-247 293-525 (579)
105 KOG0985 Vesicle coat protein c 99.1 1.5E-05 3.3E-10 76.0 39.6 322 43-421 982-1305(1666)
106 KOG3617 WD40 and TPR repeat-co 99.0 7.6E-06 1.7E-10 76.3 33.6 393 20-490 738-1170(1416)
107 KOG1070 rRNA processing protei 99.0 5.5E-07 1.2E-11 88.2 26.3 243 242-491 1446-1697(1710)
108 KOG3616 Selective LIM binding 99.0 4.8E-06 1E-10 76.6 30.1 111 261-384 738-848 (1636)
109 KOG2053 Mitochondrial inherita 98.9 5.4E-05 1.2E-09 71.6 46.1 92 364-457 440-534 (932)
110 PLN02789 farnesyltranstransfer 98.9 3.5E-06 7.6E-11 73.2 26.2 213 13-231 40-266 (320)
111 KOG1128 Uncharacterized conser 98.9 2.3E-06 5E-11 78.5 25.4 221 216-458 394-615 (777)
112 KOG3616 Selective LIM binding 98.9 4E-05 8.6E-10 70.8 32.8 292 158-488 740-1057(1636)
113 PLN02789 farnesyltranstransfer 98.9 5.1E-06 1.1E-10 72.2 26.4 211 50-266 42-266 (320)
114 TIGR03302 OM_YfiO outer membra 98.9 5E-07 1.1E-11 76.3 19.4 184 10-214 33-232 (235)
115 KOG2053 Mitochondrial inherita 98.9 9.1E-05 2E-09 70.1 46.8 455 19-492 18-534 (932)
116 KOG1070 rRNA processing protei 98.8 5.7E-06 1.2E-10 81.5 26.3 226 217-446 1455-1687(1710)
117 TIGR03302 OM_YfiO outer membra 98.8 1.5E-06 3.2E-11 73.4 20.0 186 289-495 32-233 (235)
118 COG5010 TadD Flp pilus assembl 98.8 2.6E-06 5.7E-11 68.4 19.7 160 294-457 70-229 (257)
119 KOG3081 Vesicle coat complex C 98.8 1.8E-05 3.9E-10 63.7 24.0 250 1-269 1-255 (299)
120 KOG1128 Uncharacterized conser 98.8 3.7E-06 8E-11 77.2 22.9 216 257-494 400-616 (777)
121 PRK14720 transcript cleavage f 98.8 6.3E-06 1.4E-10 80.1 25.0 234 8-266 29-268 (906)
122 PF12854 PPR_1: PPR repeat 98.8 1.5E-08 3.3E-13 54.5 4.2 32 5-36 2-33 (34)
123 PF12854 PPR_1: PPR repeat 98.7 1.4E-08 3E-13 54.7 3.7 32 75-106 2-33 (34)
124 PRK10370 formate-dependent nit 98.7 3.6E-06 7.8E-11 68.0 19.3 155 297-467 23-180 (198)
125 KOG3081 Vesicle coat complex C 98.7 1.7E-05 3.6E-10 64.0 22.2 248 194-458 17-270 (299)
126 COG5010 TadD Flp pilus assembl 98.7 2.2E-06 4.7E-11 68.9 17.4 166 44-214 66-231 (257)
127 PRK14720 transcript cleavage f 98.7 9.7E-06 2.1E-10 78.8 24.8 221 42-301 28-268 (906)
128 PRK15359 type III secretion sy 98.7 2.4E-06 5.2E-11 65.1 16.0 94 363-458 27-120 (144)
129 PRK10370 formate-dependent nit 98.7 1.4E-06 3E-11 70.3 15.3 157 16-188 22-181 (198)
130 PRK15179 Vi polysaccharide bio 98.7 1.8E-05 3.9E-10 76.1 25.0 237 114-373 27-268 (694)
131 PRK15359 type III secretion sy 98.6 1.4E-06 3E-11 66.4 13.4 111 31-147 14-124 (144)
132 PRK15179 Vi polysaccharide bio 98.6 3.2E-05 6.9E-10 74.5 24.5 235 79-337 27-267 (694)
133 KOG3060 Uncharacterized conser 98.6 4.7E-05 1E-09 61.0 20.7 189 267-459 24-220 (289)
134 KOG3060 Uncharacterized conser 98.6 0.00021 4.5E-09 57.4 24.3 163 223-389 55-220 (289)
135 COG4783 Putative Zn-dependent 98.5 0.00029 6.2E-09 62.3 25.7 108 126-237 317-425 (484)
136 TIGR02552 LcrH_SycD type III s 98.5 9E-06 2E-10 61.8 14.1 94 363-458 20-113 (135)
137 TIGR02552 LcrH_SycD type III s 98.5 7.8E-06 1.7E-10 62.1 13.6 101 44-146 16-116 (135)
138 PF09976 TPR_21: Tetratricopep 98.4 1.8E-05 3.9E-10 60.7 14.8 125 12-140 14-143 (145)
139 COG4783 Putative Zn-dependent 98.4 0.00029 6.4E-09 62.3 23.1 202 24-249 251-454 (484)
140 PF09976 TPR_21: Tetratricopep 98.4 2.7E-05 5.9E-10 59.7 14.0 125 363-491 15-144 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.3E-05 9.3E-10 67.9 14.8 129 45-179 169-297 (395)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.4E-05 9.5E-10 67.9 14.8 121 330-457 174-295 (395)
143 TIGR00756 PPR pentatricopeptid 98.1 5.4E-06 1.2E-10 45.5 4.3 33 47-79 2-34 (35)
144 cd00189 TPR Tetratricopeptide 98.1 6.4E-05 1.4E-09 53.0 11.2 94 13-108 3-96 (100)
145 KOG2041 WD40 repeat protein [G 98.1 0.0092 2E-07 55.6 27.9 206 42-281 689-904 (1189)
146 TIGR00756 PPR pentatricopeptid 98.1 8E-06 1.7E-10 44.8 4.4 33 432-464 2-34 (35)
147 PF13812 PPR_3: Pentatricopept 98.1 7.4E-06 1.6E-10 44.5 3.8 24 49-72 5-28 (34)
148 PF12895 Apc3: Anaphase-promot 98.1 1E-05 2.2E-10 55.3 5.3 81 23-105 2-83 (84)
149 PF10037 MRP-S27: Mitochondria 98.0 0.00012 2.5E-09 65.5 13.1 124 250-373 61-186 (429)
150 PRK15363 pathogenicity island 98.0 0.0003 6.5E-09 52.8 13.2 98 46-145 36-133 (157)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00023 4.9E-09 52.6 13.0 98 12-109 4-105 (119)
152 PF10037 MRP-S27: Mitochondria 98.0 0.00013 2.7E-09 65.3 13.2 125 214-338 60-186 (429)
153 PF13812 PPR_3: Pentatricopept 98.0 9E-06 2E-10 44.2 4.0 33 11-43 2-34 (34)
154 PF05843 Suf: Suppressor of fo 98.0 0.00013 2.7E-09 62.9 12.7 130 327-459 3-136 (280)
155 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.6E-09 62.2 13.3 133 11-146 2-138 (280)
156 PLN03088 SGT1, suppressor of 98.0 0.00022 4.8E-09 63.8 14.6 94 15-110 7-100 (356)
157 cd00189 TPR Tetratricopeptide 98.0 0.00016 3.5E-09 50.9 11.4 95 48-144 3-97 (100)
158 PRK10866 outer membrane biogen 98.0 0.0027 5.8E-08 53.3 19.8 178 190-386 37-238 (243)
159 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00023 5E-09 52.6 12.3 101 47-147 4-108 (119)
160 PF14938 SNAP: Soluble NSF att 98.0 0.0017 3.6E-08 56.3 19.2 63 222-284 157-225 (282)
161 PF08579 RPM2: Mitochondrial r 98.0 0.00012 2.7E-09 50.7 9.5 74 17-90 32-114 (120)
162 PRK10866 outer membrane biogen 98.0 0.004 8.7E-08 52.3 20.4 57 225-281 180-238 (243)
163 PF12895 Apc3: Anaphase-promot 98.0 1.1E-05 2.5E-10 55.0 4.3 81 408-490 2-83 (84)
164 PRK15363 pathogenicity island 97.9 0.00047 1E-08 51.9 12.5 95 221-317 36-130 (157)
165 KOG0550 Molecular chaperone (D 97.9 0.012 2.6E-07 51.3 24.1 89 300-389 259-350 (486)
166 KOG0553 TPR repeat-containing 97.9 0.00019 4.2E-09 59.3 10.8 91 55-147 91-181 (304)
167 PRK02603 photosystem I assembl 97.9 0.00079 1.7E-08 53.4 14.3 114 46-164 36-165 (172)
168 COG4700 Uncharacterized protei 97.9 0.006 1.3E-07 46.8 18.9 133 322-458 86-221 (251)
169 PRK10153 DNA-binding transcrip 97.9 0.0013 2.8E-08 61.7 17.4 135 42-179 334-482 (517)
170 KOG1258 mRNA processing protei 97.9 0.021 4.5E-07 52.5 35.2 410 11-444 46-489 (577)
171 PF14938 SNAP: Soluble NSF att 97.9 0.002 4.2E-08 55.9 17.1 98 256-353 156-265 (282)
172 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.018 3.8E-07 50.9 38.1 79 7-88 39-117 (660)
173 PLN03088 SGT1, suppressor of 97.8 0.00054 1.2E-08 61.3 13.9 90 333-424 10-99 (356)
174 KOG0550 Molecular chaperone (D 97.8 0.017 3.6E-07 50.5 22.3 57 15-72 54-110 (486)
175 COG4700 Uncharacterized protei 97.8 0.0027 5.7E-08 48.7 15.0 157 16-176 62-219 (251)
176 PF14559 TPR_19: Tetratricopep 97.8 7.4E-05 1.6E-09 48.5 6.2 53 21-74 2-54 (68)
177 PF07079 DUF1347: Protein of u 97.8 0.02 4.4E-07 50.6 38.7 137 19-160 15-177 (549)
178 CHL00033 ycf3 photosystem I as 97.8 0.00097 2.1E-08 52.7 13.5 81 325-406 35-117 (168)
179 PF07079 DUF1347: Protein of u 97.8 0.022 4.8E-07 50.4 41.0 378 56-456 90-521 (549)
180 PF13525 YfiO: Outer membrane 97.8 0.011 2.4E-07 48.3 19.3 169 190-379 10-197 (203)
181 COG4235 Cytochrome c biogenesi 97.8 0.0013 2.8E-08 54.9 13.7 116 341-459 138-256 (287)
182 CHL00033 ycf3 photosystem I as 97.8 0.0011 2.3E-08 52.5 13.1 112 26-138 15-136 (168)
183 PF08579 RPM2: Mitochondrial r 97.8 0.00089 1.9E-08 46.6 10.5 79 49-127 29-116 (120)
184 PRK10153 DNA-binding transcrip 97.8 0.0023 5.1E-08 60.0 16.9 145 320-469 332-490 (517)
185 PF01535 PPR: PPR repeat; Int 97.7 4E-05 8.6E-10 40.5 3.1 28 47-74 2-29 (31)
186 PF13432 TPR_16: Tetratricopep 97.7 0.00016 3.5E-09 46.4 6.6 57 17-74 4-60 (65)
187 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 40.1 3.5 29 12-40 2-30 (31)
188 KOG2041 WD40 repeat protein [G 97.7 0.042 9.1E-07 51.5 25.4 201 7-245 689-903 (1189)
189 PRK02603 photosystem I assembl 97.7 0.0035 7.6E-08 49.8 15.0 81 189-270 39-121 (172)
190 KOG0553 TPR repeat-containing 97.7 0.00068 1.5E-08 56.2 10.8 95 300-398 91-185 (304)
191 PF12688 TPR_5: Tetratrico pep 97.7 0.0019 4E-08 46.9 11.7 92 365-458 6-103 (120)
192 PF13414 TPR_11: TPR repeat; P 97.7 0.0002 4.4E-09 46.6 6.2 63 10-73 3-66 (69)
193 PF13432 TPR_16: Tetratricopep 97.6 0.00035 7.5E-09 44.8 7.0 59 436-495 3-61 (65)
194 COG3898 Uncharacterized membra 97.6 0.037 8E-07 48.1 28.2 116 58-178 97-216 (531)
195 PF13525 YfiO: Outer membrane 97.6 0.019 4.1E-07 47.0 18.5 47 191-237 147-195 (203)
196 COG4235 Cytochrome c biogenesi 97.6 0.0049 1.1E-07 51.6 14.9 101 77-179 153-256 (287)
197 KOG2796 Uncharacterized conser 97.6 0.026 5.6E-07 46.1 18.6 138 327-467 179-321 (366)
198 KOG1130 Predicted G-alpha GTPa 97.6 0.002 4.3E-08 55.8 12.7 282 18-317 25-342 (639)
199 PF12688 TPR_5: Tetratrico pep 97.6 0.0074 1.6E-07 43.8 13.9 90 16-107 7-102 (120)
200 PF06239 ECSIT: Evolutionarily 97.6 0.0012 2.7E-08 52.2 10.2 99 30-130 34-153 (228)
201 PF14559 TPR_19: Tetratricopep 97.5 0.00031 6.6E-09 45.6 5.7 52 57-109 3-54 (68)
202 PF13414 TPR_11: TPR repeat; P 97.5 0.00077 1.7E-08 43.8 7.2 63 45-108 3-66 (69)
203 PF06239 ECSIT: Evolutionarily 97.5 0.002 4.3E-08 51.1 10.4 90 6-95 43-153 (228)
204 KOG1130 Predicted G-alpha GTPa 97.5 0.0022 4.8E-08 55.5 11.4 130 328-457 198-342 (639)
205 PRK10803 tol-pal system protei 97.5 0.0027 5.9E-08 53.7 11.9 85 92-178 155-245 (263)
206 PRK10803 tol-pal system protei 97.4 0.0049 1.1E-07 52.1 12.3 99 47-147 145-249 (263)
207 KOG1538 Uncharacterized conser 97.4 0.03 6.4E-07 51.9 17.5 86 257-353 749-845 (1081)
208 PF13371 TPR_9: Tetratricopept 97.3 0.0016 3.5E-08 42.9 7.4 56 18-74 3-58 (73)
209 PRK15331 chaperone protein Sic 97.3 0.047 1E-06 41.6 15.0 95 222-318 39-133 (165)
210 KOG2796 Uncharacterized conser 97.2 0.089 1.9E-06 43.2 19.7 132 82-214 179-315 (366)
211 PRK15331 chaperone protein Sic 97.2 0.013 2.8E-07 44.6 11.5 90 53-144 45-134 (165)
212 PF13281 DUF4071: Domain of un 97.1 0.17 3.6E-06 44.9 19.8 186 272-459 120-334 (374)
213 PF13371 TPR_9: Tetratricopept 97.1 0.0044 9.6E-08 40.7 7.5 56 53-109 3-58 (73)
214 KOG1258 mRNA processing protei 97.1 0.25 5.4E-06 45.9 34.5 410 43-479 43-489 (577)
215 PF03704 BTAD: Bacterial trans 97.0 0.007 1.5E-07 46.5 9.3 73 45-118 62-139 (146)
216 PF03704 BTAD: Bacterial trans 97.0 0.01 2.3E-07 45.6 9.7 124 10-152 3-138 (146)
217 COG3898 Uncharacterized membra 96.9 0.26 5.7E-06 43.1 31.1 218 267-495 166-393 (531)
218 KOG2114 Vacuolar assembly/sort 96.9 0.47 1E-05 45.9 23.5 151 12-175 336-488 (933)
219 COG4105 ComL DNA uptake lipopr 96.8 0.21 4.5E-06 41.2 20.6 74 193-266 42-117 (254)
220 PF13281 DUF4071: Domain of un 96.8 0.34 7.4E-06 43.1 19.9 31 359-389 304-334 (374)
221 PF13424 TPR_12: Tetratricopep 96.8 0.0026 5.7E-08 42.5 4.4 62 432-493 7-74 (78)
222 KOG0543 FKBP-type peptidyl-pro 96.8 0.028 6.2E-07 49.1 11.3 95 397-494 259-355 (397)
223 PF13424 TPR_12: Tetratricopep 96.7 0.0047 1E-07 41.3 5.4 25 397-421 48-72 (78)
224 PF12921 ATP13: Mitochondrial 96.7 0.043 9.3E-07 40.3 10.6 51 76-126 48-99 (126)
225 KOG1585 Protein required for f 96.7 0.26 5.7E-06 40.1 16.5 85 47-141 33-117 (308)
226 KOG1538 Uncharacterized conser 96.7 0.58 1.3E-05 44.0 20.3 90 186-284 748-846 (1081)
227 PF04840 Vps16_C: Vps16, C-ter 96.6 0.43 9.4E-06 41.9 28.8 82 364-455 181-262 (319)
228 PF13512 TPR_18: Tetratricopep 96.6 0.09 1.9E-06 39.1 11.3 83 11-93 11-95 (142)
229 PF04840 Vps16_C: Vps16, C-ter 96.5 0.49 1.1E-05 41.6 29.4 63 12-88 2-64 (319)
230 PRK11906 transcriptional regul 96.5 0.57 1.2E-05 42.6 18.0 85 61-148 320-405 (458)
231 KOG0543 FKBP-type peptidyl-pro 96.5 0.072 1.6E-06 46.8 11.8 92 17-109 215-320 (397)
232 PF12921 ATP13: Mitochondrial 96.4 0.076 1.6E-06 39.1 10.3 84 9-92 1-100 (126)
233 COG3118 Thioredoxin domain-con 96.4 0.51 1.1E-05 39.9 17.7 122 123-247 142-263 (304)
234 KOG1585 Protein required for f 96.4 0.43 9.4E-06 38.9 15.6 87 12-108 33-119 (308)
235 PF10300 DUF3808: Protein of u 96.4 0.36 7.9E-06 45.3 16.9 178 30-214 177-376 (468)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.084 1.8E-06 47.5 11.9 66 8-74 73-141 (453)
237 KOG2280 Vacuolar assembly/sort 96.3 1.1 2.3E-05 43.1 33.5 107 363-488 687-793 (829)
238 PF10300 DUF3808: Protein of u 96.3 0.39 8.4E-06 45.1 16.9 164 152-317 190-374 (468)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.056 1.2E-06 48.6 10.7 99 357-461 72-176 (453)
240 COG5107 RNA14 Pre-mRNA 3'-end 96.3 0.75 1.6E-05 41.3 32.9 131 360-494 397-531 (660)
241 PF04053 Coatomer_WDAD: Coatom 96.3 0.26 5.7E-06 45.5 15.2 130 56-215 272-403 (443)
242 COG3118 Thioredoxin domain-con 96.3 0.58 1.3E-05 39.5 17.4 145 227-374 141-286 (304)
243 PF13428 TPR_14: Tetratricopep 96.2 0.019 4.2E-07 33.0 5.0 38 12-50 3-40 (44)
244 PF09205 DUF1955: Domain of un 96.2 0.31 6.7E-06 35.4 13.5 61 434-495 90-150 (161)
245 COG1729 Uncharacterized protei 96.1 0.24 5.3E-06 41.2 12.8 90 195-284 151-244 (262)
246 KOG2610 Uncharacterized conser 96.1 0.24 5.2E-06 42.3 12.6 156 55-212 113-274 (491)
247 COG1729 Uncharacterized protei 96.1 0.16 3.4E-06 42.3 11.4 100 47-147 144-247 (262)
248 PF13512 TPR_18: Tetratricopep 96.0 0.3 6.5E-06 36.4 11.6 80 189-268 14-95 (142)
249 KOG4555 TPR repeat-containing 96.0 0.17 3.6E-06 36.6 9.7 93 368-461 51-146 (175)
250 PF08631 SPO22: Meiosis protei 95.9 1.1 2.3E-05 39.0 24.7 164 326-492 85-273 (278)
251 KOG2114 Vacuolar assembly/sort 95.8 2.1 4.6E-05 41.8 26.2 47 366-416 711-757 (933)
252 KOG1941 Acetylcholine receptor 95.7 0.6 1.3E-05 40.5 13.5 227 20-247 16-273 (518)
253 smart00299 CLH Clathrin heavy 95.6 0.7 1.5E-05 35.1 14.8 85 14-106 11-95 (140)
254 PF13428 TPR_14: Tetratricopep 95.6 0.04 8.7E-07 31.7 4.7 38 47-85 3-40 (44)
255 KOG4555 TPR repeat-containing 95.6 0.27 5.7E-06 35.6 9.2 91 334-425 52-145 (175)
256 PF04053 Coatomer_WDAD: Coatom 95.6 0.41 8.9E-06 44.2 13.2 130 292-454 297-426 (443)
257 COG3629 DnrI DNA-binding trans 95.5 0.2 4.4E-06 42.4 10.2 80 44-124 152-236 (280)
258 KOG2610 Uncharacterized conser 95.5 0.45 9.8E-06 40.8 12.0 154 301-457 114-274 (491)
259 COG4649 Uncharacterized protei 95.5 0.85 1.8E-05 35.1 13.7 55 195-249 142-196 (221)
260 PRK11906 transcriptional regul 95.5 1.4 3E-05 40.2 15.6 79 342-423 321-400 (458)
261 KOG3941 Intermediate in Toll s 95.4 0.25 5.5E-06 41.1 9.9 89 43-131 65-174 (406)
262 KOG2280 Vacuolar assembly/sort 95.4 2.8 6.1E-05 40.5 36.3 111 327-456 686-796 (829)
263 COG0457 NrfG FOG: TPR repeat [ 95.4 1.4 3E-05 37.0 28.4 221 234-458 37-264 (291)
264 smart00299 CLH Clathrin heavy 95.3 0.92 2E-05 34.4 15.3 86 48-141 10-95 (140)
265 COG4105 ComL DNA uptake lipopr 95.3 1.4 3.1E-05 36.6 21.4 55 265-319 44-100 (254)
266 KOG2066 Vacuolar assembly/sort 95.3 3.1 6.7E-05 40.4 26.9 102 17-127 363-467 (846)
267 PF04184 ST7: ST7 protein; In 95.1 2.6 5.7E-05 38.7 17.2 77 326-402 260-338 (539)
268 KOG3941 Intermediate in Toll s 95.1 0.3 6.4E-06 40.7 9.5 100 77-176 64-185 (406)
269 KOG1920 IkappaB kinase complex 95.1 4.7 0.0001 41.3 20.3 25 467-491 1186-1210(1265)
270 PF08631 SPO22: Meiosis protei 94.8 2.4 5.3E-05 36.7 25.4 17 440-456 256-272 (278)
271 PF04184 ST7: ST7 protein; In 94.7 3.4 7.3E-05 38.0 19.4 63 116-178 260-323 (539)
272 KOG1941 Acetylcholine receptor 94.6 1.7 3.7E-05 37.9 13.0 55 261-315 128-187 (518)
273 COG4785 NlpI Lipoprotein NlpI, 94.5 2.1 4.5E-05 34.5 14.4 30 221-250 238-267 (297)
274 COG4785 NlpI Lipoprotein NlpI, 94.4 2.2 4.8E-05 34.3 14.8 183 264-459 74-266 (297)
275 PF13176 TPR_7: Tetratricopept 94.2 0.14 3E-06 27.8 4.1 27 467-493 1-27 (36)
276 COG3629 DnrI DNA-binding trans 94.2 0.79 1.7E-05 39.0 10.2 79 80-159 153-236 (280)
277 PF10602 RPN7: 26S proteasome 94.1 1.2 2.7E-05 35.3 10.8 61 362-422 38-100 (177)
278 PF07035 Mic1: Colon cancer-as 94.0 2.3 5E-05 33.1 15.5 33 66-98 15-47 (167)
279 COG2976 Uncharacterized protei 93.8 2.8 6E-05 33.2 13.3 54 439-494 135-188 (207)
280 COG0457 NrfG FOG: TPR repeat [ 93.7 3.6 7.8E-05 34.4 28.4 117 59-176 37-156 (291)
281 PF10602 RPN7: 26S proteasome 93.7 1.8 3.9E-05 34.4 11.1 64 46-109 37-102 (177)
282 PF13431 TPR_17: Tetratricopep 93.7 0.11 2.3E-06 27.8 2.9 31 34-65 3-33 (34)
283 PF13176 TPR_7: Tetratricopept 93.7 0.18 4E-06 27.3 3.9 23 48-70 2-24 (36)
284 COG4649 Uncharacterized protei 93.5 2.7 5.9E-05 32.5 14.5 122 57-178 70-195 (221)
285 PF09205 DUF1955: Domain of un 93.5 2.2 4.8E-05 31.2 15.3 61 189-250 90-150 (161)
286 PF13431 TPR_17: Tetratricopep 92.9 0.19 4.1E-06 26.8 3.2 30 245-275 4-33 (34)
287 KOG1920 IkappaB kinase complex 92.8 13 0.00029 38.4 27.3 105 333-457 947-1053(1265)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 92.7 1 2.2E-05 30.7 6.9 49 410-458 22-70 (103)
289 PF13170 DUF4003: Protein of u 92.6 6.7 0.00014 34.3 19.8 127 273-401 80-223 (297)
290 PF02259 FAT: FAT domain; Int 92.4 8.1 0.00018 35.0 22.5 181 16-213 4-212 (352)
291 PF13170 DUF4003: Protein of u 92.4 7 0.00015 34.1 20.4 132 237-370 79-227 (297)
292 KOG2396 HAT (Half-A-TPR) repea 92.2 9.6 0.00021 35.2 38.7 66 8-74 103-169 (568)
293 PF02284 COX5A: Cytochrome c o 92.1 0.98 2.1E-05 31.2 6.3 47 413-459 28-74 (108)
294 PF02284 COX5A: Cytochrome c o 92.0 2.9 6.4E-05 29.0 8.7 62 13-74 11-74 (108)
295 PF07035 Mic1: Colon cancer-as 91.9 4.9 0.00011 31.3 15.3 135 346-494 15-149 (167)
296 PF07719 TPR_2: Tetratricopept 91.8 0.6 1.3E-05 24.6 4.4 28 467-494 3-30 (34)
297 PF09613 HrpB1_HrpK: Bacterial 91.7 4.9 0.00011 30.9 13.4 16 161-176 55-70 (160)
298 PF09613 HrpB1_HrpK: Bacterial 91.6 5 0.00011 30.8 12.9 53 20-74 20-73 (160)
299 KOG2066 Vacuolar assembly/sort 91.5 15 0.00033 36.1 25.9 102 52-162 363-467 (846)
300 PF00515 TPR_1: Tetratricopept 91.3 0.74 1.6E-05 24.3 4.4 28 467-494 3-30 (34)
301 KOG4234 TPR repeat-containing 91.3 2.5 5.4E-05 33.6 8.6 95 367-466 102-202 (271)
302 KOG0890 Protein kinase of the 91.1 31 0.00068 38.9 25.8 323 14-354 1387-1731(2382)
303 COG1747 Uncharacterized N-term 91.0 13 0.00029 34.5 22.6 180 42-229 63-248 (711)
304 PF00515 TPR_1: Tetratricopept 90.5 0.87 1.9E-05 24.0 4.2 26 83-108 4-29 (34)
305 KOG4570 Uncharacterized conser 90.3 3.3 7.2E-05 35.5 9.1 50 95-144 115-164 (418)
306 KOG4570 Uncharacterized conser 90.0 5.6 0.00012 34.2 10.1 103 355-459 59-164 (418)
307 PF07719 TPR_2: Tetratricopept 90.0 1 2.2E-05 23.7 4.2 24 120-143 6-29 (34)
308 PF13374 TPR_10: Tetratricopep 89.8 0.94 2E-05 25.3 4.3 28 466-493 3-30 (42)
309 PF11207 DUF2989: Protein of u 89.7 4.5 9.8E-05 32.4 9.0 75 60-135 121-198 (203)
310 KOG1550 Extracellular protein 89.5 22 0.00047 34.6 25.2 114 26-146 228-359 (552)
311 KOG0276 Vesicle coat complex C 89.4 13 0.00028 35.3 12.7 152 20-211 596-747 (794)
312 KOG4648 Uncharacterized conser 89.4 3.1 6.6E-05 36.1 8.3 91 54-146 106-196 (536)
313 PRK15180 Vi polysaccharide bio 89.3 18 0.00038 33.3 14.2 126 227-355 296-421 (831)
314 PF13174 TPR_6: Tetratricopept 89.1 0.93 2E-05 23.6 3.7 25 470-494 5-29 (33)
315 PF04097 Nic96: Nup93/Nic96; 89.1 25 0.00054 34.8 22.9 43 50-93 116-158 (613)
316 KOG4648 Uncharacterized conser 89.0 1.6 3.5E-05 37.7 6.5 95 366-465 103-198 (536)
317 COG3947 Response regulator con 89.0 8.6 0.00019 32.7 10.4 58 84-142 283-340 (361)
318 PF13374 TPR_10: Tetratricopep 88.8 1.2 2.6E-05 24.8 4.2 26 397-422 4-29 (42)
319 PF06552 TOM20_plant: Plant sp 88.8 3.6 7.8E-05 32.2 7.6 14 374-387 42-55 (186)
320 COG4455 ImpE Protein of avirul 88.5 4.3 9.4E-05 32.8 8.1 77 12-89 3-81 (273)
321 PF06552 TOM20_plant: Plant sp 88.4 6.9 0.00015 30.7 8.9 108 26-144 7-136 (186)
322 COG2976 Uncharacterized protei 88.4 11 0.00025 30.0 14.6 85 90-179 99-188 (207)
323 PF11207 DUF2989: Protein of u 88.4 9.9 0.00021 30.6 10.0 79 90-170 117-198 (203)
324 KOG2471 TPR repeat-containing 88.3 21 0.00046 33.0 13.4 107 370-478 250-382 (696)
325 PF04097 Nic96: Nup93/Nic96; 88.3 28 0.00061 34.4 22.9 45 117-162 113-157 (613)
326 KOG4234 TPR repeat-containing 88.3 5.5 0.00012 31.8 8.4 89 195-284 105-197 (271)
327 PF13181 TPR_8: Tetratricopept 88.1 1.7 3.7E-05 22.8 4.3 28 467-494 3-30 (34)
328 KOG1550 Extracellular protein 88.0 27 0.00059 34.0 27.0 181 131-320 228-427 (552)
329 PF13174 TPR_6: Tetratricopept 87.9 1.1 2.4E-05 23.3 3.4 24 121-144 6-29 (33)
330 TIGR02561 HrpB1_HrpK type III 87.8 10 0.00022 28.7 11.0 51 371-425 21-74 (153)
331 KOG0890 Protein kinase of the 87.5 57 0.0012 37.1 31.5 61 431-494 1671-1731(2382)
332 PF10345 Cohesin_load: Cohesin 87.1 33 0.00072 34.0 39.1 192 301-493 372-605 (608)
333 PF02259 FAT: FAT domain; Int 87.1 23 0.00049 32.0 21.3 192 51-248 4-212 (352)
334 PRK11619 lytic murein transgly 87.0 34 0.00074 34.0 39.7 48 404-454 416-463 (644)
335 PF07721 TPR_4: Tetratricopept 87.0 1.3 2.8E-05 21.8 3.0 20 15-34 6-25 (26)
336 TIGR03504 FimV_Cterm FimV C-te 86.9 1.5 3.3E-05 25.0 3.6 26 470-495 4-29 (44)
337 PF10345 Cohesin_load: Cohesin 86.8 35 0.00075 33.8 39.7 429 28-458 39-605 (608)
338 TIGR03504 FimV_Cterm FimV C-te 86.7 2.1 4.6E-05 24.5 4.1 25 120-144 4-28 (44)
339 TIGR02561 HrpB1_HrpK type III 86.7 12 0.00026 28.4 12.3 16 93-108 23-38 (153)
340 PF13762 MNE1: Mitochondrial s 86.6 9.3 0.0002 28.9 8.5 96 35-130 27-130 (145)
341 PRK09687 putative lyase; Provi 86.4 21 0.00046 31.0 27.7 233 218-475 35-277 (280)
342 KOG1464 COP9 signalosome, subu 85.6 21 0.00045 30.1 15.8 152 94-247 41-218 (440)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 85.2 10 0.00022 26.2 9.1 63 25-88 22-84 (103)
344 PF07163 Pex26: Pex26 protein; 85.0 15 0.00032 31.3 9.6 87 192-278 90-181 (309)
345 KOG2396 HAT (Half-A-TPR) repea 84.5 35 0.00076 31.8 38.3 98 392-493 456-558 (568)
346 PF07163 Pex26: Pex26 protein; 84.3 18 0.00039 30.8 9.9 88 226-313 89-181 (309)
347 PF00637 Clathrin: Region in C 84.2 0.56 1.2E-05 35.8 1.4 54 51-104 13-66 (143)
348 PF00637 Clathrin: Region in C 84.0 0.71 1.5E-05 35.2 1.9 53 297-349 14-66 (143)
349 PF07575 Nucleopor_Nup85: Nup8 83.8 46 0.001 32.6 22.2 27 45-72 149-175 (566)
350 KOG1464 COP9 signalosome, subu 83.3 27 0.00058 29.5 17.6 203 179-383 20-254 (440)
351 KOG4077 Cytochrome c oxidase, 82.9 8.6 0.00019 28.0 6.5 47 413-459 67-113 (149)
352 KOG2063 Vacuolar assembly/sort 82.8 60 0.0013 33.3 18.5 26 258-283 687-712 (877)
353 PF13181 TPR_8: Tetratricopept 82.8 3.6 7.8E-05 21.5 3.9 25 13-37 4-28 (34)
354 COG4455 ImpE Protein of avirul 82.8 11 0.00025 30.6 7.9 75 48-123 4-80 (273)
355 PRK09687 putative lyase; Provi 82.3 33 0.00071 29.8 28.5 235 42-301 34-278 (280)
356 KOG0276 Vesicle coat complex C 81.1 30 0.00065 33.1 11.0 133 12-177 616-748 (794)
357 KOG4507 Uncharacterized conser 80.4 30 0.00064 33.0 10.7 112 186-299 608-719 (886)
358 COG2909 MalT ATP-dependent tra 80.3 70 0.0015 32.4 29.7 226 195-420 425-684 (894)
359 PF10579 Rapsyn_N: Rapsyn N-te 79.6 6.2 0.00014 25.9 4.6 48 442-489 18-67 (80)
360 COG0790 FOG: TPR repeat, SEL1 79.0 44 0.00095 29.3 20.6 150 267-425 53-221 (292)
361 COG2909 MalT ATP-dependent tra 78.9 78 0.0017 32.1 32.4 229 227-455 422-684 (894)
362 PF09986 DUF2225: Uncharacteri 78.9 30 0.00065 28.6 9.6 24 471-494 171-194 (214)
363 KOG0403 Neoplastic transformat 78.2 56 0.0012 30.0 18.2 24 188-211 348-371 (645)
364 KOG4077 Cytochrome c oxidase, 77.8 11 0.00024 27.4 5.7 47 448-494 67-113 (149)
365 PF10579 Rapsyn_N: Rapsyn N-te 77.4 9.8 0.00021 25.0 5.0 46 372-417 18-65 (80)
366 PF08424 NRDE-2: NRDE-2, neces 77.1 54 0.0012 29.3 16.2 99 7-107 16-129 (321)
367 KOG3364 Membrane protein invol 77.1 28 0.0006 26.0 8.7 66 392-458 29-99 (149)
368 smart00028 TPR Tetratricopepti 76.3 6.5 0.00014 19.5 3.7 26 468-493 4-29 (34)
369 PF09670 Cas_Cas02710: CRISPR- 76.1 45 0.00097 30.6 10.8 58 16-74 137-198 (379)
370 COG3947 Response regulator con 76.0 51 0.0011 28.4 15.4 58 399-457 283-340 (361)
371 cd00280 TRFH Telomeric Repeat 74.9 26 0.00056 27.7 7.5 20 89-108 120-139 (200)
372 KOG4507 Uncharacterized conser 73.7 24 0.00052 33.5 8.3 153 181-335 567-720 (886)
373 KOG2471 TPR repeat-containing 73.6 80 0.0017 29.6 15.9 60 4-63 11-70 (696)
374 cd00280 TRFH Telomeric Repeat 72.8 46 0.00099 26.4 9.3 49 96-144 85-140 (200)
375 COG1747 Uncharacterized N-term 72.8 86 0.0019 29.6 24.5 164 219-389 65-234 (711)
376 KOG1308 Hsp70-interacting prot 72.3 8.2 0.00018 33.7 4.8 117 336-457 125-242 (377)
377 PRK11619 lytic murein transgly 71.2 1.2E+02 0.0025 30.4 36.6 55 226-281 318-372 (644)
378 PF13929 mRNA_stabil: mRNA sta 70.5 71 0.0015 27.6 15.8 116 270-385 143-263 (292)
379 PF14853 Fis1_TPR_C: Fis1 C-te 70.4 18 0.0004 21.7 4.7 28 437-466 8-35 (53)
380 PF14689 SPOB_a: Sensor_kinase 70.2 13 0.00027 23.3 4.2 24 49-72 27-50 (62)
381 PF08424 NRDE-2: NRDE-2, neces 70.1 81 0.0018 28.2 17.0 138 322-461 16-185 (321)
382 KOG1586 Protein required for f 69.7 65 0.0014 26.9 18.3 26 226-251 160-185 (288)
383 PF14689 SPOB_a: Sensor_kinase 69.5 15 0.00033 22.9 4.5 23 470-492 28-50 (62)
384 PF09454 Vps23_core: Vps23 cor 69.4 12 0.00026 23.7 3.9 49 8-57 6-54 (65)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 67.7 48 0.001 24.6 7.6 21 434-454 103-123 (126)
386 PF09477 Type_III_YscG: Bacter 66.9 43 0.00093 23.8 8.1 14 61-74 22-35 (116)
387 COG0735 Fur Fe2+/Zn2+ uptake r 66.4 52 0.0011 25.2 7.7 47 70-117 11-57 (145)
388 PF07575 Nucleopor_Nup85: Nup8 66.0 1.4E+02 0.003 29.4 20.9 27 10-37 149-175 (566)
389 PF14853 Fis1_TPR_C: Fis1 C-te 66.0 21 0.00045 21.5 4.3 28 468-495 4-31 (53)
390 TIGR02508 type_III_yscG type I 65.4 44 0.00096 23.4 8.3 52 53-110 47-98 (115)
391 COG0735 Fur Fe2+/Zn2+ uptake r 65.2 52 0.0011 25.1 7.5 59 420-479 11-69 (145)
392 PF12862 Apc5: Anaphase-promot 64.9 33 0.00072 23.7 6.0 22 472-493 48-69 (94)
393 PF12926 MOZART2: Mitotic-spin 64.8 40 0.00088 22.7 8.3 42 31-72 29-70 (88)
394 TIGR02508 type_III_yscG type I 64.4 46 0.001 23.3 7.9 52 368-425 47-98 (115)
395 COG5159 RPN6 26S proteasome re 63.8 96 0.0021 26.7 14.9 49 190-238 8-63 (421)
396 COG5108 RPO41 Mitochondrial DN 63.7 59 0.0013 31.7 8.7 73 15-90 33-113 (1117)
397 smart00386 HAT HAT (Half-A-TPR 63.6 18 0.00038 18.3 3.6 26 25-51 2-27 (33)
398 PF11663 Toxin_YhaV: Toxin wit 63.4 2 4.3E-05 31.5 -0.4 27 476-502 106-132 (140)
399 PF11846 DUF3366: Domain of un 63.2 38 0.00083 27.4 7.0 59 49-109 112-173 (193)
400 PF11848 DUF3368: Domain of un 63.2 28 0.00061 20.3 4.8 33 440-472 12-44 (48)
401 PRK10941 hypothetical protein; 62.6 81 0.0018 27.2 8.9 57 121-178 187-243 (269)
402 PF12862 Apc5: Anaphase-promot 62.6 48 0.0011 22.9 6.8 20 53-72 49-68 (94)
403 PF02184 HAT: HAT (Half-A-TPR) 62.5 20 0.00043 18.8 3.2 25 445-471 2-26 (32)
404 PRK15180 Vi polysaccharide bio 60.8 1.5E+02 0.0032 27.8 31.4 128 17-147 296-423 (831)
405 PF09477 Type_III_YscG: Bacter 60.7 58 0.0013 23.2 7.9 78 375-459 21-98 (116)
406 PF00244 14-3-3: 14-3-3 protei 60.7 1E+02 0.0022 26.0 9.9 59 50-108 6-65 (236)
407 KOG1308 Hsp70-interacting prot 59.4 17 0.00037 31.9 4.3 85 58-145 127-212 (377)
408 KOG0128 RNA-binding protein SA 59.3 2.1E+02 0.0045 29.1 33.9 100 42-144 110-219 (881)
409 PF04910 Tcf25: Transcriptiona 59.1 1.4E+02 0.0031 27.2 18.9 58 261-318 109-167 (360)
410 PF09670 Cas_Cas02710: CRISPR- 58.9 1.5E+02 0.0032 27.3 11.2 55 334-389 140-198 (379)
411 KOG4642 Chaperone-dependent E3 58.8 1.1E+02 0.0024 25.7 10.9 85 20-108 20-106 (284)
412 PF11663 Toxin_YhaV: Toxin wit 58.8 12 0.00026 27.7 2.8 26 61-88 111-136 (140)
413 KOG0376 Serine-threonine phosp 58.2 35 0.00076 31.6 6.2 109 13-125 7-115 (476)
414 COG5191 Uncharacterized conser 58.2 36 0.00078 29.5 5.9 66 43-109 105-171 (435)
415 PF13929 mRNA_stabil: mRNA sta 57.8 1.3E+02 0.0028 26.2 22.9 61 254-314 201-262 (292)
416 PRK10564 maltose regulon perip 57.7 29 0.00064 30.0 5.4 43 181-223 252-295 (303)
417 PF04910 Tcf25: Transcriptiona 57.5 1.5E+02 0.0033 27.0 21.4 119 19-142 19-166 (360)
418 PRK09857 putative transposase; 57.1 86 0.0019 27.5 8.3 29 469-497 244-272 (292)
419 PF11846 DUF3366: Domain of un 57.0 74 0.0016 25.7 7.6 35 112-146 141-175 (193)
420 KOG2034 Vacuolar sorting prote 57.0 2.4E+02 0.0051 29.0 22.8 50 86-141 364-415 (911)
421 cd08819 CARD_MDA5_2 Caspase ac 56.6 60 0.0013 22.0 6.5 14 304-317 50-63 (88)
422 PF11817 Foie-gras_1: Foie gra 56.3 82 0.0018 26.8 8.0 61 117-177 180-245 (247)
423 PF11848 DUF3368: Domain of un 56.2 39 0.00085 19.8 4.9 27 93-119 15-41 (48)
424 KOG0687 26S proteasome regulat 55.7 1.5E+02 0.0032 26.3 15.8 97 256-354 105-210 (393)
425 PF04762 IKI3: IKI3 family; I 55.4 2.8E+02 0.0061 29.4 12.9 134 7-144 692-843 (928)
426 PF10366 Vps39_1: Vacuolar sor 55.0 76 0.0017 22.7 7.2 26 83-108 42-67 (108)
427 PRK10941 hypothetical protein; 54.7 1.4E+02 0.0031 25.8 10.5 78 48-126 184-262 (269)
428 KOG0403 Neoplastic transformat 54.1 1.9E+02 0.004 27.0 27.2 63 433-496 512-574 (645)
429 KOG4642 Chaperone-dependent E3 53.1 1.4E+02 0.003 25.2 11.3 80 199-281 24-104 (284)
430 PF05944 Phage_term_smal: Phag 52.2 97 0.0021 23.2 6.7 27 49-75 52-78 (132)
431 COG0790 FOG: TPR repeat, SEL1 52.2 1.6E+02 0.0035 25.7 23.5 152 231-391 52-222 (292)
432 PF13762 MNE1: Mitochondrial s 51.4 1.1E+02 0.0023 23.4 10.0 81 83-163 42-128 (145)
433 PHA02875 ankyrin repeat protei 51.0 2.1E+02 0.0046 26.7 13.0 206 231-466 10-231 (413)
434 cd08819 CARD_MDA5_2 Caspase ac 51.0 76 0.0017 21.6 6.9 65 240-310 22-86 (88)
435 KOG2063 Vacuolar assembly/sort 50.5 3.1E+02 0.0068 28.5 25.3 116 187-302 506-638 (877)
436 PF14561 TPR_20: Tetratricopep 50.2 81 0.0018 21.6 8.3 32 43-74 20-51 (90)
437 KOG2659 LisH motif-containing 50.2 1.5E+02 0.0032 24.7 8.8 21 402-422 71-91 (228)
438 KOG0991 Replication factor C, 50.0 1.5E+02 0.0033 24.8 13.0 91 300-393 169-271 (333)
439 PF09868 DUF2095: Uncharacteri 49.4 82 0.0018 22.6 5.5 25 51-75 67-91 (128)
440 PF09986 DUF2225: Uncharacteri 49.2 1.5E+02 0.0033 24.5 10.7 24 436-459 171-194 (214)
441 PF11817 Foie-gras_1: Foie gra 49.1 1.1E+02 0.0024 26.0 7.7 62 151-212 179-245 (247)
442 KOG4567 GTPase-activating prot 48.7 1.5E+02 0.0033 26.0 8.0 43 311-353 264-306 (370)
443 PRK10564 maltose regulon perip 48.7 51 0.0011 28.6 5.4 31 48-78 260-290 (303)
444 KOG1586 Protein required for f 48.6 1.6E+02 0.0035 24.7 19.9 26 192-217 161-186 (288)
445 PRK09462 fur ferric uptake reg 48.4 1.2E+02 0.0027 23.2 7.6 35 235-269 32-66 (148)
446 PF14669 Asp_Glu_race_2: Putat 47.1 1.5E+02 0.0033 23.9 15.9 54 226-279 138-205 (233)
447 COG5108 RPO41 Mitochondrial DN 46.7 2.1E+02 0.0045 28.3 9.3 72 50-124 33-112 (1117)
448 KOG0991 Replication factor C, 46.6 1.8E+02 0.0038 24.5 13.1 136 225-370 135-282 (333)
449 KOG2659 LisH motif-containing 46.5 1.7E+02 0.0037 24.3 9.4 99 42-142 23-130 (228)
450 KOG0686 COP9 signalosome, subu 46.1 2.4E+02 0.0053 25.9 14.4 60 13-72 153-214 (466)
451 PRK13800 putative oxidoreducta 45.3 4E+02 0.0087 28.3 27.4 248 217-493 632-880 (897)
452 PF09454 Vps23_core: Vps23 cor 45.2 72 0.0016 20.3 4.4 49 43-92 6-54 (65)
453 KOG0545 Aryl-hydrocarbon recep 44.8 1.9E+02 0.0042 24.4 10.1 95 52-147 185-296 (329)
454 KOG4521 Nuclear pore complex, 44.5 4.3E+02 0.0094 28.4 13.6 25 399-423 1374-1398(1480)
455 KOG2422 Uncharacterized conser 44.2 3.1E+02 0.0067 26.6 16.1 134 186-319 285-448 (665)
456 KOG1839 Uncharacterized protei 43.6 3.9E+02 0.0084 29.0 11.4 27 217-243 970-996 (1236)
457 KOG0376 Serine-threonine phosp 43.5 65 0.0014 30.0 5.6 90 157-249 11-101 (476)
458 KOG0551 Hsp90 co-chaperone CNS 43.2 1.7E+02 0.0036 26.1 7.5 94 362-457 83-180 (390)
459 KOG2297 Predicted translation 43.0 2.3E+02 0.005 24.9 21.6 71 265-345 265-341 (412)
460 KOG4279 Serine/threonine prote 42.9 3.7E+02 0.008 27.2 10.4 25 329-353 205-229 (1226)
461 PF10366 Vps39_1: Vacuolar sor 42.4 1.3E+02 0.0027 21.6 7.6 27 432-458 41-67 (108)
462 COG5187 RPN7 26S proteasome re 42.3 2.3E+02 0.005 24.6 12.7 26 326-351 116-141 (412)
463 KOG3677 RNA polymerase I-assoc 42.1 2.8E+02 0.0061 25.6 10.0 59 48-107 238-299 (525)
464 KOG3364 Membrane protein invol 41.8 1.5E+02 0.0033 22.3 9.8 68 217-284 29-100 (149)
465 PRK11639 zinc uptake transcrip 41.5 1.8E+02 0.0038 23.0 7.9 37 233-269 38-74 (169)
466 KOG2908 26S proteasome regulat 41.4 2.6E+02 0.0057 25.0 9.5 53 301-353 86-143 (380)
467 PRK11639 zinc uptake transcrip 41.4 1.8E+02 0.0038 23.0 7.6 62 386-448 17-78 (169)
468 PRK13342 recombination factor 41.3 3.1E+02 0.0066 25.7 19.0 21 269-289 244-264 (413)
469 PRK12798 chemotaxis protein; R 41.2 3E+02 0.0064 25.6 21.8 238 171-408 98-343 (421)
470 PF00244 14-3-3: 14-3-3 protei 40.3 2.3E+02 0.005 24.0 9.1 60 14-73 5-65 (236)
471 cd07153 Fur_like Ferric uptake 40.1 1E+02 0.0022 22.2 5.4 48 401-448 6-53 (116)
472 KOG2062 26S proteasome regulat 40.0 4.1E+02 0.0089 26.9 32.4 51 439-490 510-562 (929)
473 PF02847 MA3: MA3 domain; Int 40.0 1.4E+02 0.003 21.4 7.7 60 14-75 6-67 (113)
474 PRK09462 fur ferric uptake reg 39.8 1.7E+02 0.0037 22.4 7.2 38 409-446 31-68 (148)
475 KOG4567 GTPase-activating prot 38.9 2.5E+02 0.0054 24.7 7.8 71 240-315 263-343 (370)
476 PRK13184 pknD serine/threonine 38.4 5.1E+02 0.011 27.5 27.7 330 158-501 483-876 (932)
477 PF04762 IKI3: IKI3 family; I 37.9 5.3E+02 0.011 27.5 17.3 22 49-70 698-719 (928)
478 KOG0686 COP9 signalosome, subu 37.8 3.3E+02 0.0072 25.1 14.1 62 117-178 152-215 (466)
479 PF01475 FUR: Ferric uptake re 37.8 98 0.0021 22.5 5.1 45 435-479 12-56 (120)
480 PF04190 DUF410: Protein of un 37.8 2.7E+02 0.0058 24.0 17.8 26 253-278 88-113 (260)
481 PRK13342 recombination factor 37.4 3.5E+02 0.0076 25.3 18.7 21 199-219 244-264 (413)
482 PF03745 DUF309: Domain of unk 37.2 1.1E+02 0.0023 19.3 5.9 15 58-72 12-26 (62)
483 PF05944 Phage_term_smal: Phag 36.9 1.8E+02 0.0039 21.8 9.0 30 398-427 51-80 (132)
484 PF14561 TPR_20: Tetratricopep 36.5 1.4E+02 0.0031 20.5 9.4 32 114-145 21-52 (90)
485 cd07153 Fur_like Ferric uptake 36.4 1.2E+02 0.0026 21.8 5.4 34 94-127 14-47 (116)
486 COG4003 Uncharacterized protei 36.3 1.3E+02 0.0028 20.0 5.1 25 51-75 37-61 (98)
487 PF15297 CKAP2_C: Cytoskeleton 36.1 3.3E+02 0.0071 24.6 9.0 63 412-476 120-186 (353)
488 KOG0545 Aryl-hydrocarbon recep 36.1 2.7E+02 0.0059 23.6 12.6 57 192-249 237-293 (329)
489 PF11768 DUF3312: Protein of u 36.1 4.1E+02 0.0089 25.7 10.5 61 329-389 412-473 (545)
490 KOG0292 Vesicle coat complex C 35.9 2.7E+02 0.0058 28.7 8.6 55 44-107 671-725 (1202)
491 PF10255 Paf67: RNA polymerase 35.8 3.7E+02 0.0079 25.1 12.7 58 85-142 127-191 (404)
492 PF04190 DUF410: Protein of un 34.9 3E+02 0.0064 23.7 19.3 25 149-173 89-113 (260)
493 PF10963 DUF2765: Protein of u 34.4 1.3E+02 0.0029 20.2 4.6 33 5-37 11-43 (83)
494 KOG0687 26S proteasome regulat 33.8 3.5E+02 0.0075 24.2 12.7 135 40-178 65-209 (393)
495 KOG2422 Uncharacterized conser 33.5 4.7E+02 0.01 25.6 16.6 90 404-493 351-447 (665)
496 PF08311 Mad3_BUB1_I: Mad3/BUB 33.3 2E+02 0.0044 21.3 9.1 46 446-491 79-125 (126)
497 cd08790 DED_DEDD Death Effecto 32.3 92 0.002 21.6 3.6 59 442-502 36-94 (97)
498 PF13646 HEAT_2: HEAT repeats; 32.3 1.5E+02 0.0033 19.6 8.3 63 42-109 11-73 (88)
499 cd08780 Death_TRADD Death Doma 32.2 1.7E+02 0.0036 20.0 5.1 54 433-488 35-88 (90)
500 smart00777 Mad3_BUB1_I Mad3/BU 31.8 2.2E+02 0.0047 21.2 8.3 20 469-488 103-122 (125)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-70 Score=533.25 Aligned_cols=493 Identities=18% Similarity=0.229 Sum_probs=390.8
Q ss_pred CCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH
Q 048258 3 FLGI-SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY 81 (504)
Q Consensus 3 ~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 81 (504)
+.|+ +++..+++.++..|.+.|.+++|..+|+.|. .|+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..
T Consensus 398 ~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~ 473 (1060)
T PLN03218 398 KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK 473 (1060)
T ss_pred hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3443 4555556666666666666666666666665 3777888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHh
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLS 161 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (504)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+..|+..+|+.++.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888887788888888888888
Q ss_pred cCCChHHHHHHHHHHhh--CCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 162 NNSMASEAAAILRKMGD--RGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
+.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 88888888888888865 5677888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
.++|+.|.+.+..||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 048258 320 GFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFN 399 (504)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 399 (504)
|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyn 793 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHc----c-------------------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 400 ALIQSFCR----M-------------------NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 400 ~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
.++..|.+ + +..+.|..+|++|.+.|+.||..+|+.++.+++..+..+.+..+++.|
T Consensus 794 sLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 794 CITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 87755331 1 123567788888888888888888888887777777777777777777
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCC
Q 048258 457 EQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISFKSF 501 (504)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 501 (504)
...+..|+..+|..+++++.+. .++|..++++|.+.|+.|+..
T Consensus 874 ~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 874 GISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7776777788888888877332 367889999999988888763
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9e-70 Score=528.44 Aligned_cols=492 Identities=15% Similarity=0.215 Sum_probs=468.2
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhH
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQC-KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTY 83 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
+..++...|..++..+++.|++++|+++|+.|.+.++ +++..+++.++..|.+.|.+++|..+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3456677899999999999999999999999999885 57788888999999999999999999999974 899999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.+..++..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh--cCCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 164 SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK--RGVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 5789999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCC
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGF 321 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (504)
+|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----c-------------------CChhHHHHHHHHHHh
Q 048258 402 IQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----S-------------------GRFDEAKQTFLSMEQ 458 (504)
Q Consensus 402 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~ 458 (504)
+.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876542 1 124679999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048258 459 NGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
.|+.||..+|..++.+++..+..+.+..+++.|...+..|+.
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 999999999999999888999999999999888777766654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-67 Score=521.21 Aligned_cols=469 Identities=17% Similarity=0.222 Sum_probs=295.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
|+.||..+|++++++|.+.+++..+.+++..+.+.|+.|+..+|+.++.+|++.|+++.|.++|++|. .||..+||
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhH
Confidence 34444444433333333333333333333333333334444444555555566666666666666664 24556666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++.+.|+.+.|.+++..+.+.+..++..+|+.++.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..++..++.+|++.|+++.|.++++
T Consensus 338 ~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 338 SWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 66666666666642 45666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.+.+.+..++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. +..||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 666666666666666666666666666666666666643 3556666666666666666666666666654 35666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQS 404 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (504)
..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.+ .||..+|+.++.+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~ 563 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG 563 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666654 3566666666666
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 405 FCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME-QNGCNPDSYTSNLILETLVQQGRFEE 483 (504)
Q Consensus 405 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~ 483 (504)
|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.+|.+.|++++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 66666666666666666666666666666666666666666666666666666 45666666666666666666666666
Q ss_pred HHHHHHHH
Q 048258 484 AHDIVKTS 491 (504)
Q Consensus 484 a~~~~~~~ 491 (504)
|.+++++|
T Consensus 644 A~~~~~~m 651 (857)
T PLN03077 644 AYNFINKM 651 (857)
T ss_pred HHHHHHHC
Confidence 66666665
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-67 Score=521.75 Aligned_cols=481 Identities=19% Similarity=0.246 Sum_probs=430.8
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 3 FLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
+.|..++..++++++..|.+.|+++.|..+|+.|. +||..+|+.++.+|++.|++++|+++|++|...|+.||..+
T Consensus 114 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 45677888888999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
|+.++++|+..+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|+++.. ++..+||.++.+|++
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~ 265 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFE 265 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999854 477899999999999
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHH
Q 048258 163 NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (504)
.|++++|+++|++|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 266 ~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK 322 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (504)
|+.|. .+|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.
T Consensus 346 f~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 346 FSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 99885 46888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 323 PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 9999999999999999999999999988854 4666777777777777777777777777765 3667766666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCC------------------------------CCCcccHHHHHHHHHhcCChhHHHHH
Q 048258 403 QSFCRMNKIEKAEKAFFSMLTLGL------------------------------RPDNFSYSALIKALIKSGRFDEAKQT 452 (504)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (504)
.+|++.|+++.+.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544444444433 46777899999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCC
Q 048258 453 FLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK-ERGISFKS 500 (504)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 500 (504)
|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 9999999999999999999999999999999999999999 67888874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-65 Score=493.18 Aligned_cols=477 Identities=15% Similarity=0.196 Sum_probs=454.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQ-CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
..++..+|+.++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34456689999999999999999999999998764 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+..++..+|+.++.++...|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 47999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. ++|..+|+.++.+|.+.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 4688999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.|.+.++.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|+.|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864 68
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA-DRISPDIYTFNALIQ 403 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 403 (504)
..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFE 482 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 482 (504)
+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999998765 46899999999999999999999999999999764 55 5679999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 048258 483 EAHDIVKTSKERGISFK 499 (504)
Q Consensus 483 ~a~~~~~~~~~~~~~~~ 499 (504)
+|.++++.|.++|+...
T Consensus 546 ~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 546 EAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHHHHHHcCCccC
Confidence 99999999999997543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-63 Score=479.24 Aligned_cols=479 Identities=16% Similarity=0.236 Sum_probs=443.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
++.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999997 47999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
.++.+|++.|++++|.++|++|.+.|+.|+..++..++.++.+.|+.+.+.+++..+.+.+..++..+++.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
++++|.++|++|.. +|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..+|..++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999974 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (504)
.+.+.+..+|..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVE-WGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQ 403 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (504)
..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 689999999999999999999999999999876 46899999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHH---HHHH--
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRP-DNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLIL---ETLV-- 476 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~---~~~~-- 476 (504)
+|...|+++.|..+++++.+. .| +..+|..++..|++.|++++|.++++.|.+.|+...+ .+|..+. +.+.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~ 580 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccC
Confidence 999999999999999999865 45 4679999999999999999999999999999975432 2221110 0000
Q ss_pred ------hcCCHHHHHHHHHHHHHcCCCCCC
Q 048258 477 ------QQGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 477 ------~~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
...-++...++..+|.+.|+.|+.
T Consensus 581 d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 581 DRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 011245667788888889988874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.5e-33 Score=284.60 Aligned_cols=463 Identities=13% Similarity=0.072 Sum_probs=281.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.++..+.+.|+++.|..+++.+.... ++++.++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 513 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG 513 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC
Confidence 34444455555555555555554432 3445555555555666666666666666555443 233444555555555566
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++....+. +...+..++..+...|++++|..+++
T Consensus 514 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666655543 224445555555566666666666666665554443 33445555566666666666666666
Q ss_pred HHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 048258 175 KMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN 254 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (504)
.+.... +.+...+..+..++...|++++|+..++.+.+.. +.+...+..++..+...|++++|...++++.+..+. +
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-N 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 665432 2345566666666666666666666666666543 334555666666666666666666666666655433 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 255 VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 5566666666666666666666666666554 2345556666666666777777777776666553 333555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKA 414 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 414 (504)
+.+.|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHH
Confidence 667777777777777666653 4456666667777777777777777777776653 4456666777777777777 667
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 415 EKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
..+++++.+.. +.+...+..+..++...|++++|..+++++.+.+ +.+..++..++.++.+.|++++|.+++++|+
T Consensus 823 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 823 LEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777776642 2234455666677777777777777777777654 2366677777777777777777777777765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.4e-32 Score=277.28 Aligned_cols=475 Identities=12% Similarity=0.052 Sum_probs=325.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG------------ 75 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------ 75 (504)
.++..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++.+.+..
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 345666777777777777777777777776554 3445555555556666666666666665554432
Q ss_pred ---------------------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 048258 76 ---------------------YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKA 134 (504)
Q Consensus 76 ---------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (504)
.+++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 12344455555555556666666666666655542 22334455555556666666666
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 135 FELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
.+.++++....|. +..++..+...+.+.|+.++|...++++...+. .+...+..++..+...|++++|..+++.+.+.
T Consensus 519 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 6666666555443 445555566666666666666666666655432 24455566666677777777777777776654
Q ss_pred CCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048258 215 GVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFN 294 (504)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (504)
. +.+...+..++.++...|++++|...++.+.+..+. +...+..+..++.+.|++++|...++++.+.. +.+..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3 445667777777777777777777777777765543 55666677777777777777777777776653 22566777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 048258 295 TLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG 374 (504)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (504)
.+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+.... |+..++..+..++...|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 77777777777777877777777654 3456667777777888888888888888887753 44466777788888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 375 DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+.. +++...+..++..+...|+ .+|+..++
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 8888888888887753 5567788888888888888888888888888764 4456778888888888888 77888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 455 SMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
++.... +.+..++..++.++...|++++|.++++++.+.+.
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888752 33556777888889999999999999999998763
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=7.3e-25 Score=223.91 Aligned_cols=476 Identities=14% Similarity=0.053 Sum_probs=333.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFT-YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
....+.+.+.|++++|++.|+.+.+.+ +|+... ...........|++++|++.++++.+.. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence 445567888999999999999988765 444322 1111122234588999999999998874 4467778888888888
Q ss_pred cCChhhHHHHHHHHHHcCCC--------------------------------CChhhH---------------------H
Q 048258 93 AKRVAEVFRVLEIMKERNVC--------------------------------PNEATV---------------------R 119 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~---------------------~ 119 (504)
.|+.++|++.++++...... |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 99999999998887543210 110000 0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhH----------
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTF---------- 188 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---------- 188 (504)
.....+...|++++|...|++.+...|. +...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 1134456779999999999999888765 56778888899999999999999999987653321 11111
Q ss_pred --HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 048258 189 --DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMV----- 261 (504)
Q Consensus 189 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 261 (504)
......+.+.|++++|+..++++.... +.+...+..+...+...|++++|++.|+++++..+. +...+..+
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 122446678899999999999998874 446677888889999999999999999998876544 33332222
Q ss_pred -------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 262 -------------------------------------IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 262 -------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
...+...|++++|++.|++..+..+. +...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 23344678888888888888776433 5666777888888888
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW------------------------------ 354 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------ 354 (504)
++++|...++++.+.... +...+..+...+...++.++|+..++.+...
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999998888888765322 3333222222233344444444433322100
Q ss_pred ---------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 355 ---------GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 355 ---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
..+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.++.+.+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 124455566778888889999999999999998863 4467788889999999999999999999887642
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 048258 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC--NP---DSYTSNLILETLVQQGRFEEAHDIVKTSKE-RGISF 498 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~ 498 (504)
+.+...+..+..++...|++++|.++++++..... +| +...+..++..+...|++++|.+.++++.. .|+.|
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 22345566778888899999999999999886421 11 224566678888899999999999999864 34443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.1e-24 Score=220.52 Aligned_cols=477 Identities=11% Similarity=0.011 Sum_probs=341.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhH----------------HHHHHHHHhcCCHHHHHHHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTY----------------NILIHGICRIGVVDEALRLVKQM 71 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~ 71 (504)
.|+..+..++..+.+.|+.++|.+.++++.+.. +.+.... ..+...+...|++++|++.|+.+
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 467778889999999999999999999999875 4444432 23344678899999999999999
Q ss_pred HhCCCCCcHHh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcc-
Q 048258 72 EGLGYAPNVYT-YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQ- 149 (504)
Q Consensus 72 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 149 (504)
.+.+ +|+... ...........|+.++|++.++++.+.. +.+......+...+...|+.++|++.++++....+...
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 8764 444321 1111222234589999999999999874 33566788889999999999999999998765321100
Q ss_pred ------------------hhHH----------------------------------HHHHHHHhcCCChHHHHHHHHHHh
Q 048258 150 ------------------KLVC----------------------------------NTLLYRLSNNSMASEAAAILRKMG 177 (504)
Q Consensus 150 ------------------~~~~----------------------------------~~l~~~~~~~~~~~~a~~~~~~~~ 177 (504)
...+ ......+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 011344567899999999999988
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc-HH------------HHHHHHHHHHhcCCcHHHHHHHH
Q 048258 178 DRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR-FS------------TYLLLMEALYKAGRDVEGDRYLN 244 (504)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~------------~~~~l~~~~~~~~~~~~a~~~~~ 244 (504)
.... .+...+..+..++.+.|++++|+..|++..+...... .. ........+.+.|++++|...|+
T Consensus 297 ~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7632 2677888899999999999999999999887642221 11 11233556778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH----------------------------
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTL---------------------------- 296 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------------------- 296 (504)
++.+..+. +...+..+..++...|++++|++.|++..+.... +...+..+
T Consensus 376 ~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 376 QARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 99988755 6777888899999999999999999998876422 23333222
Q ss_pred --------------HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 048258 297 --------------ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362 (504)
Q Consensus 297 --------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (504)
...+...|++++|.+.+++..+..+ -+...+..+...|.+.|++++|...++++.+.. +.+...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 2234456888888888888877643 256667778888888888999988888887653 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------------------CCCCCHHhHHHHHH
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQAD---------------------------------------RISPDIYTFNALIQ 403 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~ 403 (504)
+..+...+...++.++|...++.+... ..+.+...+..+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~ 611 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHH
Confidence 333333334444444444444332110 12344556677788
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFE 482 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 482 (504)
.+...|++++|...|+++++.. +.+...+..++..+...|++++|.+.++.+.+. .| +..+...++.++...|+++
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHH
Confidence 8889999999999999999863 335677888889999999999999999988764 34 4556777888889999999
Q ss_pred HHHHHHHHHHHcC
Q 048258 483 EAHDIVKTSKERG 495 (504)
Q Consensus 483 ~a~~~~~~~~~~~ 495 (504)
+|.++++++....
T Consensus 689 eA~~~~~~al~~~ 701 (1157)
T PRK11447 689 AAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhhhC
Confidence 9999999988753
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-24 Score=188.91 Aligned_cols=448 Identities=12% Similarity=0.053 Sum_probs=359.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..+..-..+.|++..|.+.-...-+.+ +.+......+-..+.+..+.+....--....+.. +.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 345556667788888888776665554 4444444555556666667776655555544442 34567899999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
|++++|+..++.+.+... -....|..+..++...|+.+.|.+.|.+.++..|. .......+...+...|+..+|...|
T Consensus 130 g~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999998742 25678999999999999999999999999988664 2233334555566789999999999
Q ss_pred HHHhhCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 174 RKMGDRGYLPE-SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 174 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
.+..+. .|. ...|+.+...+..+|+...|++-|++..+.. +.-...|..+...|...+.++.|...|.++....+.
T Consensus 208 lkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 888765 333 3468888889999999999999999998863 223578999999999999999999999999987655
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
...++..+...|-..|.+|.|+..+++..+..+. -...|+.+..++-..|++.+|...|........ .-....+.|.
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg 361 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG 361 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 6778888888899999999999999999887432 467899999999999999999999999987642 3466788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKI 411 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 411 (504)
..|...|.++.|..+|....+.. +--....+.|...|-++|++++|+..+++.+. +.|+ ...|+.+...|-..|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999998852 22345788999999999999999999999987 4676 45899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhc
Q 048258 412 EKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLILETLVQQ 478 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 478 (504)
+.|.+.+.+++.. .|. ....+.|...|-.+|++.+|++-+++.+. ++||. ..+..++.++.-.
T Consensus 439 ~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 439 SAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHH
Confidence 9999999999985 555 56788999999999999999999999998 46764 4566666655433
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-23 Score=182.45 Aligned_cols=407 Identities=12% Similarity=0.083 Sum_probs=339.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
-..+.+..+.+.....-....+.. +.-.++|..+...+-..|++++|+.+++.+.+.. +.....|..+..++...|+.
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCC
Confidence 344555556666555544444443 5567899999999999999999999999999874 34678999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEA-TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+.|.+.|.+..+.+ |+.. ....+...+-..|+.++|...|.+.++..|. -..+|..|...+..+|+...|+..|++
T Consensus 167 ~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~e 243 (966)
T KOG4626|consen 167 ELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEE 243 (966)
T ss_pred cccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHH
Confidence 99999999999873 4444 4455666667789999999999999988764 567889999999999999999999999
Q ss_pred HhhCCCCCC-hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC
Q 048258 176 MGDRGYLPE-SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN 254 (504)
Q Consensus 176 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (504)
.... .|+ ...|-.+...|...+.+++|...|.+..... +....++..+...|..+|..+.|+..|++.++..+. -
T Consensus 244 Avkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F 319 (966)
T KOG4626|consen 244 AVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-F 319 (966)
T ss_pred hhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-c
Confidence 9875 444 4578889999999999999999999988763 445677888899999999999999999999987655 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 255 VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
+..|+.+..++-..|+..+|...+.+....... -..+.+.|...|...|.++.|..+|....+.. +--...++.|...
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASI 397 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHH
Confidence 788999999999999999999999999887433 56788999999999999999999999988753 2234578889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPN-TITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIE 412 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 412 (504)
|-++|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|.+.+.+++.. .|. ...++.|...|-..|+..
T Consensus 398 ~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcH
Confidence 99999999999999999985 555 458999999999999999999999999985 454 568999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC-cccHHHHHHHH
Q 048258 413 KAEKAFFSMLTLGLRPD-NFSYSALIKAL 440 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 440 (504)
+|++-|++.++. +|| +..|..++.++
T Consensus 474 ~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 474 EAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 999999999984 677 45666666553
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.3e-20 Score=184.39 Aligned_cols=230 Identities=10% Similarity=0.047 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
..|..+..++.. ++.++|+..+.+..... |+......+...+...|++++|...++.+... +|+...+..+..++
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 334444444443 55666776666655542 34333333344446788888888888877554 33444455666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 415 (504)
.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888888764 223333334444455669999999999998875 567778888889999999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
..+++..+.. +.+...+..+..++...|++++|+..+++..+.. +-+...+..++.++...|++++|+..++++.+..
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999863 3345667788888999999999999999998852 3366788899999999999999999999998754
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=3.1e-21 Score=185.47 Aligned_cols=429 Identities=11% Similarity=0.032 Sum_probs=292.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+.+.|+++.|+..|++..+. .|++..|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 446677788888999999999888866 5677788888888888899999999888888764 3456778888888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
.|++++|+.-|......+...+. ....++..... ..+...........+. +...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhh
Confidence 89998888888766554321121 11222221111 1223333333333322 1111221211 1111111111111
Q ss_pred HHHHhhCCCCCC-hhhHHHHHHH---HHccCChhhHHHHHHHHHhcC-C-CccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 173 LRKMGDRGYLPE-SSTFDYTVTC---LVTGLDLNETCGILDTFIKRG-V-KPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 173 ~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
+....+. .+. ...+..+... ....+++++|.+.++...+.+ . +.....+..+...+...|++++|...++++
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 1111111111 123467889999999988764 2 334556788888888999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (504)
+...+. ....|..+...+...|++++|+..|++..+... .+..++..+...+...|++++|...|++..+... .+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHH
Confidence 887654 566788888888899999999999998887643 3677888888899999999999999999887643 3566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------hHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY------TFNA 400 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~ 400 (504)
.+..+..++.+.|++++|+..|++..+. .+.+...++.+...+...|++++|+..|++..+.....+.. .++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 7777888888999999999999998875 34467788889999999999999999999988753111111 1222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
....+...|++++|.+++++..+.. |+ ...+..++..+...|++++|+..|++..+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2233445689999999999988753 44 446788889999999999999999998764
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7.7e-21 Score=182.79 Aligned_cols=431 Identities=12% Similarity=0.004 Sum_probs=303.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677788899999999999998876 5788888889999999999999999999998874 2355688888999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 048258 128 CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
.|++++|...|..+....+..+... ..++..... ..+........... .++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 9999999988877665543322221 112211111 12222222222221 112222222222 2111111111111
Q ss_pred HHHHHhcCCCcc-HHHHHHHHHHH---HhcCCcHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 208 LDTFIKRGVKPR-FSTYLLLMEAL---YKAGRDVEGDRYLNHVFKDRL--VSNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 208 ~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
+....+. .+. ...+..+...+ ...+++++|.+.|+.++..+. +.....+..+..++...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 11111111111 234689999999999987642 224567888888899999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 048258 282 RDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI 361 (504)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (504)
.+..+. +...|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|+..|++..+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 887432 46678888889999999999999999998764 3467888899999999999999999999999874 44677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc------HHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS------YSA 435 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~ 435 (504)
.+..+..++.+.|++++|+..+++..+.. +.+...++.+...+...|++++|...|++.++.....+... ++.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 78889999999999999999999998752 44577899999999999999999999999998532111111 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
....+...|++++|.+++++..... +.+...+..++.++.+.|++++|.++++++.+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1222334699999999999998753 2345578889999999999999999999987653
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=5.5e-22 Score=181.52 Aligned_cols=298 Identities=12% Similarity=0.094 Sum_probs=158.2
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN---VNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 272 (504)
...|++++|+..++++.+.+ +.+..++..++..+...|++++|..+++.+......++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444432 22333444455555555555555555555444321111 123445555555556666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 273 RATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD----KFTFNSMIDCLCRAHRFEDALDCL 348 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 348 (504)
+|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666665555432 22444555555555566666666666655554432221 112334445555666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 048258 349 SEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428 (504)
Q Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 428 (504)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6666542 22344555566666666666666666666665421111334556666666666666666666666654 34
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC
Q 048258 429 DNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ---QGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..++..+++++.++++.|++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4445555666666666666666666666653 4555555555555443 34666666666666665554443
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.3e-20 Score=178.64 Aligned_cols=332 Identities=13% Similarity=0.035 Sum_probs=267.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..++..+.+.|+++.|..+++...... +.+...+..++.+....|+++.|+..++++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 346778889999999999999998776 4456666667777788999999999999998874 44677888888999999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+....|.+.. .+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998863 335667888889999999999999999988877765443 33333 3477889999999999
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH----HHHHHHHHHhC
Q 048258 174 RKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE----GDRYLNHVFKD 249 (504)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 249 (504)
+.+......++......+...+...|++++|+..++.+.... +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998776433444455566778889999999999999998874 5567788889999999999886 78999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH-HHH
Q 048258 250 RLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK-FTF 328 (504)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 328 (504)
.+. +...+..+...+...|++++|+..+++.....+. +...+..+...+.+.|++++|...++.+.+.+ |+. ..+
T Consensus 280 ~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 NSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 765 7788889999999999999999999998887533 56677788889999999999999999988764 333 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
..+..++...|++++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445667889999999999999988763
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.5e-21 Score=178.62 Aligned_cols=298 Identities=12% Similarity=0.037 Sum_probs=148.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHccCChhh
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE---SSTFDYTVTCLVTGLDLNE 203 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 203 (504)
..|++++|...|+++.+..|. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 334444444444444433322 223333344444444444444444444433211110 1223334444444444444
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 204 TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN----VNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
|...++.+.+.. +.+..++..++..+...|++++|.+.++.+.+.++.+. ...+..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444444331 22334444445555555555555555555444332211 1123344455556666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 280 EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
++.+... .+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+. .|+
T Consensus 205 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 281 (389)
T PRK11788 205 KALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPG 281 (389)
T ss_pred HHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 6655431 1334555555666666666666666666655432222344555666666666666666666666654 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR---MNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 444556666666666666666666666554 4565566655555443 345666666666666655555543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1e-19 Score=178.19 Aligned_cols=419 Identities=10% Similarity=0.006 Sum_probs=232.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.-.+....-.|+.++|+++|....... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334445555556666665555555422 3344445555555555566666666666555442 22344445555555555
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..|. +...+..+...+...+..++|++.+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 66666666665555542 12333 555555555555556666555555555544 3333333444455555555555555
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHH-----HhcCCc---HHHHHHHHH
Q 048258 174 RKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEAL-----YKAGRD---VEGDRYLNH 245 (504)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~a~~~~~~ 245 (504)
+.... .|+.... . ........+... ...+++ ++|++.++.
T Consensus 174 ~~~~~---~p~~~~~---------------------------l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 174 DDANL---TPAEKRD---------------------------L--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HhCCC---CHHHHHH---------------------------H--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 44432 1110000 0 000011111111 111122 556666666
Q ss_pred HHhCC-CCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhcCCchHHHHHHHHHHHH
Q 048258 246 VFKDR-LVSNVN-SY----NMVIDCFCKVNMMDRATEICREMRDRDIA-PNLVTFNTLISGHCKDAEVHKTRELLVMLLE 318 (504)
Q Consensus 246 ~~~~~-~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (504)
+.+.. ..|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 66431 111111 11 11123345667788888888887766432 221 222245677777888888888877765
Q ss_pred CCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHH
Q 048258 319 CGFKP---DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-----------PPN---TITYNILIRSLCAIGDVARSLR 381 (504)
Q Consensus 319 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~ 381 (504)
..... .......+..++...|++++|...++.+..... .|+ ...+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43211 123445555567778888888888887776421 122 1234556677778888888888
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 382 LFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
.++++.... +.+...+..++..+...|++++|++.++++.+. .|+ ...+...+..+...|++++|..+++++++.
T Consensus 381 ~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~- 456 (765)
T PRK10049 381 RARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR- 456 (765)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 888887753 445667788888888888888888888888875 455 445556666777888888888888888874
Q ss_pred CCCChhhHHHHHHHH
Q 048258 461 CNPDSYTSNLILETL 475 (504)
Q Consensus 461 ~~~~~~~~~~l~~~~ 475 (504)
.|+......+-+.+
T Consensus 457 -~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 457 -EPQDPGVQRLARAR 470 (765)
T ss_pred -CCCCHHHHHHHHHH
Confidence 56655544444433
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=6.1e-20 Score=175.80 Aligned_cols=361 Identities=11% Similarity=0.016 Sum_probs=288.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
.+.++.+|+.---.|....++. -..+......++..+.+.|+++.|+.+++...... +-+...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 3567788888777776665432 11233345566778889999999999999998874 33455666666777889999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKM 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (504)
++|...++++.+.. +.+...+..+...+...|++++|...+++.....|. +...+..+...+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999874 235667888899999999999999999999988665 6678888899999999999999999988
Q ss_pred hhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHH
Q 048258 177 GDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVN 256 (504)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (504)
...... +...+..+ ..+...|++++|...++.+......++......++..+...|++++|...++.+....+. +..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 765333 22333333 347889999999999999887753344455566678889999999999999999987655 778
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 257 SYNMVIDCFCKVNMMDR----ATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
.+..+...+...|++++ |+..|+......+ .+...+..+...+...|++++|...++...+... .+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 88889999999999986 8999999988753 3677888999999999999999999999988653 3566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNT-ITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
.++.+.|++++|+..++.+.... |+. ..+..+..++...|+.++|...|+++.+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999998863 343 34445677889999999999999999876
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=2.6e-19 Score=175.26 Aligned_cols=392 Identities=12% Similarity=0.015 Sum_probs=234.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+...|++++|+..++++.+.. +.+.. +..+.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la 123 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALA 123 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHH
Confidence 445568899999999999999999999998775 6678888889999999999999999999998874 44666 88888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcch----hHHHHHHHHHhcC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQK----LVCNTLLYRLSNN 163 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 163 (504)
.++...|+.++|+..++++.+... .+...+..+..++...+..+.|++.++.+.. .|.... ......+......
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998743 3555667788888889999999999987665 221000 0111122211111
Q ss_pred -----CCh---HHHHHHHHHHhhC-CCCCChhh-HH----HHHHHHHccCChhhHHHHHHHHHhcCCC-ccHHHHHHHHH
Q 048258 164 -----SMA---SEAAAILRKMGDR-GYLPESST-FD----YTVTCLVTGLDLNETCGILDTFIKRGVK-PRFSTYLLLME 228 (504)
Q Consensus 164 -----~~~---~~a~~~~~~~~~~-~~~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 228 (504)
+++ ++|++.++.+... ...|+... +. ..+..+...|++++|+..|+.+.+.+.+ |+ .....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHH
Confidence 112 4445555554432 11111110 10 0022233344444555555444443311 11 11111233
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 229 ALYKAGRDVEGDRYLNHVFKDRLVS---NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
.+...|++++|...|+.+.+..+.. .......+..++...|++++|..+++.+....+ +....+..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P-~~~~~~~~---------- 349 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP-PFLRLYGS---------- 349 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC-ceEeecCC----------
Confidence 4444444444444444444332211 012223333334444444444444444443311 00000000
Q ss_pred hHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPD---KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 382 (504)
....|+ ...+..+...+...|+.++|+..++++.... +.+...+..+...+...|++++|++.
T Consensus 350 -------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 350 -------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred -------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 000122 1234455666777888888888888877753 44666777777888888888888888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSY 433 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 433 (504)
++++.+.. +.+...+...+..+...|++++|..+++++++. .|+....
T Consensus 416 l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 416 LKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred HHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 88887753 333556666666777788888888888888874 4554433
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.1e-20 Score=167.92 Aligned_cols=445 Identities=12% Similarity=0.078 Sum_probs=282.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK--PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
-|+.+.+.|...+...|++..+..+.+.+...... .-...|-.+.++|...|++++|...|.+..+..-..-...+..
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46667777777777777777777777777654211 1233466677777777888888777777776531111334455
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----ChHHHHHHHHHHHhcCCCcchhHHHHHHHHHh
Q 048258 86 LIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL----DPHKAFELLIRFMEREPLTQKLVCNTLLYRLS 161 (504)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (504)
+.+.|.+.|+.+.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+.....+. +...|-.+...+-
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHH
Confidence 6777777777788777777777663 234445555666665554 445666666666655433 5566666665554
Q ss_pred cCCChHHHHHHHHHHh----hCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc---CCC------ccHHHHHHHHH
Q 048258 162 NNSMASEAAAILRKMG----DRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR---GVK------PRFSTYLLLME 228 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~ 228 (504)
..+-+.. +..|.... ..+..+.+...|.+.......|+++.|.+.|...... ... +...+-..+..
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 4443333 55555432 3344466677777777777778888887777776654 112 22234555666
Q ss_pred HHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHH
Q 048258 229 ALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHK 308 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (504)
.+-..++.+.|.+.|..+.+..|. -+..|-.++......++..+|...++.....+ ..++..+..+...+.+...+..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 666777777777877777776543 34444444433334566777777777776653 2355666666667777777777
Q ss_pred HHHHHHHHHHC-CCCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 048258 309 TRELLVMLLEC-GFKPDKFTFNSMIDCLCR------------AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD 375 (504)
Q Consensus 309 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (504)
|.+-|+.+.+. ...+|..+.-.|.+.|.+ .+..++|+++|.+.++.. +.|...-|.+..+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 77766665432 223466666666665432 234567777777777764 4466667777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 376 VARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG-LRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
+.+|..+|.++.+.. .....+|..+.++|..+|++..|.++|+...+.- ...+..+...|..++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 888888888877753 2245567777778888888888888887766542 23345666777777778888888877777
Q ss_pred HHHhc
Q 048258 455 SMEQN 459 (504)
Q Consensus 455 ~~~~~ 459 (504)
.....
T Consensus 741 ~a~~~ 745 (1018)
T KOG2002|consen 741 KARHL 745 (1018)
T ss_pred HHHHh
Confidence 66654
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.1e-18 Score=171.09 Aligned_cols=469 Identities=11% Similarity=-0.003 Sum_probs=333.9
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 8 PSTRLYNAV-IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR-IGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 8 ~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
|++.+.... .+.|.+.|+++.|+.++.++.+.+ +.+......+..+|.. .++ +.+..++.. ..+.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHH
Confidence 344444444 899999999999999999999887 5566667778788887 466 888887553 22357888999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC-CChhhHH------------------------------HHHHHHHhcCChHHH
Q 048258 86 LIDGFCNAKRVAEVFRVLEIMKERNVC-PNEATVR------------------------------SLVHGVFRCLDPHKA 134 (504)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~~a 134 (504)
+.+.|.+.|+.++|.++++++...-.. |...++. .++..+.+.++++.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999887654211 2222221 123445555666555
Q ss_pred HHHHHH-----------------------------HHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC--CCCC
Q 048258 135 FELLIR-----------------------------FMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR--GYLP 183 (504)
Q Consensus 135 ~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~ 183 (504)
.++..- +....+ .+.....-+.......|+.++|.++|+..... ...+
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 444210 000001 01111222223345678899999999887662 1223
Q ss_pred ChhhHHHHHHHHHccCCh---hhHHHH----------------------HHHHHhc-C-CCc--cHHHHHHHHHHHHhcC
Q 048258 184 ESSTFDYTVTCLVTGLDL---NETCGI----------------------LDTFIKR-G-VKP--RFSTYLLLMEALYKAG 234 (504)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~---~~a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~ 234 (504)
+......++..|.+.+.. ..+..+ ++..... + .++ +...+..+..++.. +
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~ 490 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T 490 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C
Confidence 344445677777776552 222222 2222211 1 134 66778888888877 8
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLV 314 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (504)
+..+|...+.......+ +......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999998888877653 3333334455557899999999999998665 3444556677788899999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048258 315 MLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD 394 (504)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 394 (504)
...+... .+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++..+.. +.+
T Consensus 567 qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~ 642 (987)
T PRK09782 567 QAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNN 642 (987)
T ss_pred HHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 9988642 23333334444455669999999999999986 4578889999999999999999999999999874 445
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHH
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLILE 473 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 473 (504)
...++.+..++...|++++|+..++++.+.. +-+...+..+..++...|++++|...+++..+. .|+. .+......
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~ 719 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPE 719 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhH
Confidence 6788888899999999999999999999863 334677889999999999999999999999985 5644 56677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 048258 474 TLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 474 ~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
...+..+++.|.+-+++....+
T Consensus 720 ~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 720 QNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888877644
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-19 Score=166.78 Aligned_cols=445 Identities=9% Similarity=0.041 Sum_probs=272.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA--PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
|+.+.+.|...|.-.|++..+.++.+.+...... .-...|..+.++|-..|++++|...|.+..+....--...+..+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 4444455555555555555555555555443200 11223455555555566666666665555544211112233445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC----ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS----MASEAAAILRKMGDRGYLPESSTFDYTVTCLVT 197 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (504)
...+.+.|+.+.+...|+.+....|. +..+...+...|...+ ..+.|..++.+....- ..|...|-.+...+..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 55556666666666666665555443 3334444444444432 2344444444444432 1244455444444443
Q ss_pred cCChhhHHHHHHHHH----hcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC---CCCCCH------HHHHHHHHH
Q 048258 198 GLDLNETCGILDTFI----KRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD---RLVSNV------NSYNMVIDC 264 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~ 264 (504)
..-+.. +..|..+. ..+..+.+...+.++..+...|.++.|...|...... ...++. .+-..+..+
T Consensus 427 ~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 TDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred cChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 333322 54444333 2344455666777777777777777777777666543 111111 123334455
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDA 344 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (504)
.-..++.+.|.+.|+.+....+ .-...|..+.......+...+|...+....... ..++..+..+...+.....+..|
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 5556677777777777766521 122334444333334566777777777776543 33566666677778888888888
Q ss_pred HHHHHHHHHCC-CCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCH
Q 048258 345 LDCLSEMVEWG-VPPNTITYNILIRSLCA------------IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKI 411 (504)
Q Consensus 345 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (504)
.+-|..+.+.- ..+|+.+...|.+.|.. .+..++|+++|.+++... +.|...-|.+..+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCc
Confidence 88777665432 23566666667765543 235678999999998874 55778888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC-NPDSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
.+|..+|.+..+.. .-...+|-.+..+|..+|++..|+++|+.....-. .-+..+...|++++.+.|.+.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999874 33567888999999999999999999999886533 34678899999999999999999999988
Q ss_pred HHHcC
Q 048258 491 SKERG 495 (504)
Q Consensus 491 ~~~~~ 495 (504)
+....
T Consensus 742 a~~~~ 746 (1018)
T KOG2002|consen 742 ARHLA 746 (1018)
T ss_pred HHHhC
Confidence 87754
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=4.8e-18 Score=163.13 Aligned_cols=440 Identities=10% Similarity=0.028 Sum_probs=219.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPD-RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+-...+.|+++.|+..|+++.+.. +.+ +..+ .++..+...|+.++|+..+++..... +........+...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 334556666666666666666553 222 1223 55556666666666666666665211 1122223333445556666
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|+++|+++.+... .++..+..++..+...++.++|++.++++....+. ...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6666666666666532 23445555566666666666666666666655443 22223333333334444446666666
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHH--HHHHHHHHhcC---------C---cHHHHH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTY--LLLMEALYKAG---------R---DVEGDR 241 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~---------~---~~~a~~ 241 (504)
+.+... .+...+..+..++.+.|-...|.++.++-... +.+..... ...+.-..+.+ + .+.|+.
T Consensus 195 ll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 665531 14445555666666666666666555442221 11111111 00011111111 1 122333
Q ss_pred HHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 242 YLNHVFKDR-LVSN-----VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 242 ~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
-++.+...- ..|. .....-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333333211 1111 1111223445555666666666666666555443344555666666666666666666666
Q ss_pred HHHCCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCh--h-hHHHHHHHHHhcCCH
Q 048258 316 LLECGF-----KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-----------PPNT--I-TYNILIRSLCAIGDV 376 (504)
Q Consensus 316 ~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~--~-~~~~l~~~~~~~g~~ 376 (504)
+..... .++......|.-++...+++++|..+++.+.+... .|+. . .+..++..+.-.|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 544321 12222334555566666666666666666655211 0111 1 123344455556666
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
.+|++.++++.... +-|......+...+...|.+.+|++.++.+... .|+ ..+....+.++...|++++|..+.+.
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66666666665542 445556666666666666666666666554443 333 33344555555566666666666666
Q ss_pred HHhcCCCCChhhHH
Q 048258 456 MEQNGCNPDSYTSN 469 (504)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (504)
+.+. .|+.....
T Consensus 510 l~~~--~Pe~~~~~ 521 (822)
T PRK14574 510 VISR--SPEDIPSQ 521 (822)
T ss_pred HHhh--CCCchhHH
Confidence 6653 44444333
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=9.3e-18 Score=161.19 Aligned_cols=431 Identities=11% Similarity=0.042 Sum_probs=324.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcH--HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNV--YTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
-...++|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... ..........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 34578999999999999999874 443 344 7888888999999999999999832 12233344445678889999
Q ss_pred hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 131 PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
+++|+++|+++.+..|.. ...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999998874 666677888999999999999999999876 45555555555555556777679999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHH------HHHHHHHH---H--hcC---CHHHHHH
Q 048258 211 FIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNS------YNMVIDCF---C--KVN---MMDRATE 276 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~---~~~~a~~ 276 (504)
+.+.. +.+...+..+..++.+.|-...|.+...+-...- .+.... ....++.- . ... -.+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 99985 5578888999999999999998887766543211 111110 01111100 0 112 2456667
Q ss_pred HHHHHHhC-CCCCCh-hhH----HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 277 ICREMRDR-DIAPNL-VTF----NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 277 ~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
-++.+... +..|.. ..| .-.+-++...+++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 77776653 122322 222 233457788999999999999999888766677888999999999999999999999
Q ss_pred HHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HhHHHHHHHHHccCCH
Q 048258 351 MVEWG-----VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRI-----------SPD--I-YTFNALIQSFCRMNKI 411 (504)
Q Consensus 351 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~~~~g~~ 411 (504)
+.... .+++......|.-++...+++++|..+++++.+... .|+ - ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 97643 123444457899999999999999999999987311 122 2 2445567778899999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+... .| +..+....+.++...|++++|..+...
T Consensus 433 ~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999998864 557788889999999999999999999887764 45 566777888999999999999999988
Q ss_pred HHHcC
Q 048258 491 SKERG 495 (504)
Q Consensus 491 ~~~~~ 495 (504)
+.+..
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 87653
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=8.7e-19 Score=147.99 Aligned_cols=461 Identities=12% Similarity=0.094 Sum_probs=323.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCC----cHHhHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYN-ILIHGICRIGVVDEALRLVKQMEGLGYAP----NVYTYT 84 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~ 84 (504)
-.++..+...|.....+.+|+..|+-+.+...-|+..... .+...+.+...+.+|+++|+-....-... .....+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3445567788888889999999999999876667665543 35667888899999999998776542111 133455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------------cchhH
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL------------TQKLV 152 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~ 152 (504)
.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+++..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 6666678999999999999999887 578777777777888899999999999998864322 12222
Q ss_pred HHHHH-----HHHhcCCC--hHHHHHHHHHHhhCCCCCChhh-------------HH--------HHHHHHHccCChhhH
Q 048258 153 CNTLL-----YRLSNNSM--ASEAAAILRKMGDRGYLPESST-------------FD--------YTVTCLVTGLDLNET 204 (504)
Q Consensus 153 ~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~-------------~~--------~l~~~~~~~~~~~~a 204 (504)
.+..+ .-+-+.+. .++++-.-.++...-+.|+... +. .-...+.+.|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 22221 11111111 1222222222222222233110 00 112357788999999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHh--cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYK--AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
+++++-..+...+.-...-+.+...+.- -.++..|.++.+..+..+-. +......-.+.....|++++|.+.|++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999988876544444444444333333 34577777777766644322 33333332333445789999999999998
Q ss_pred hCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 048258 283 DRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT 362 (504)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (504)
..+..-....| .+.-.+...|+.++|++.|-++... +..+..++-.+.+.|....+..+|++++.+.... ++.|+..
T Consensus 518 ~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred cCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 76322111222 2233467789999999999877543 1237778888899999999999999999998876 6889999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALI- 441 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 441 (504)
..-|...|-+.|+-..|.+.+-+--.- ++.+..+...|...|....-++++..+|++..- +.|+..-|..++..|.
T Consensus 595 lskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 999999999999999999887665543 567888988899889999999999999998876 5899999988776655
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048258 442 KSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 480 (504)
+.|++++|.++++....+ ++.|...+..|++.+...|.
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 689999999999999876 67788888888888877663
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=2.3e-15 Score=133.20 Aligned_cols=461 Identities=11% Similarity=0.046 Sum_probs=353.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE 98 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (504)
+.....+.+.|+-++.++.+.- +.+...|. ++.+...|+.|..++++..+. ++.+..+|......--+.|+.+.
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHH
Confidence 3444566667888888877653 44555444 455667889999999998875 57788888887777778898888
Q ss_pred HHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--chhHHHHHHHHHhcCCChHHHHHH
Q 048258 99 VFRVLEIMK----ERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT--QKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 99 a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
..+++.+-. ..|+..+...|..=...+-..|..-.+..+...++..+... ...+|+.-...|.+.+.++-|..+
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 888876553 45777888888888888888888888888888888776543 345888888889999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
|...++- +.-+...|......--..|..++...++++.... .+.....+...+..+-..|+...|..++..+.+..+.
T Consensus 539 ya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 539 YAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 9888764 2224556666666666678889999999988886 3445566777778888889999999999999988766
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
+...|-..+.....+.+++.|..+|.+.... .|+...|.--+..-.-.++.++|.+++++..+. ++.-...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHh
Confidence 8888888888888999999999999888765 456677766666666778899999999888875 333456777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIE 412 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 412 (504)
+.+-+.++.+.|...|..-.+. .+..+..|-.+...-.+.|.+-.|..++++....+ +.+...|...|+.-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 8888889999998888877765 45566678888888888889999999999888765 557778888888888999999
Q ss_pred HHHHHHHHHHhC----C-------------------------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 048258 413 KAEKAFFSMLTL----G-------------------------LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463 (504)
Q Consensus 413 ~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 463 (504)
.|..+..++++. | ...|+.....+...+....++++|++.|.+.+..+ +.
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d 849 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PD 849 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cc
Confidence 888877666542 1 12344555566666667778888888888888753 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
...+|..+...+.+.|.-++-.++++.....
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5667888888888888888888888877764
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=5.8e-15 Score=130.65 Aligned_cols=443 Identities=12% Similarity=0.027 Sum_probs=291.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCcHHhHHHHHHHHHhc
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQM----EGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
-+|.+..-|+.|..++....+. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|..=...|-..
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 4566667778888888777654 3667777777666666778777777766653 3446667777777666667777
Q ss_pred CChhhHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNE--ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
|..-.+..+.......|+.-.. .+|..-...|.+.+.++-|..+|...++..|. ....|......--..|..++...
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHH
Confidence 7777777777777666654322 36666667777777777777777777766554 55566666666666677777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 048258 172 ILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (504)
+|++....- +-....|......+-..|+...|..++..+.+.. +.+...+...+........++.|..+|.+....
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 777776542 1133344455555566677777777777777664 335666777777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHH
Q 048258 252 VSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSM 331 (504)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (504)
.++..+|..-+...--.++.++|++++++..+. ++.-...|-.+.+.+.+.++++.|.+.|..-.+. .+.....|-.+
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 345555655555555567777777777666654 2222345556666666677777777666654433 23344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------
Q 048258 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD---------------------- 389 (504)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------- 389 (504)
...-.+.|.+-.|..+++...-.+ +.+...|...++.-.+.|+.+.|..+..++.+.
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 555556667777777777766654 336666777777777777777776666555432
Q ss_pred -------CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 048258 390 -------RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN 462 (504)
Q Consensus 390 -------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 462 (504)
....|+.....+...+....++++|.+.|.+.++.+ +.+..+|..+...+.+.|.-+.-.+++...... .
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--E 881 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--E 881 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--C
Confidence 023355566677777888889999999999999874 334678888889999999988889999988874 4
Q ss_pred CC-hhhHHHHH
Q 048258 463 PD-SYTSNLIL 472 (504)
Q Consensus 463 ~~-~~~~~~l~ 472 (504)
|. ...|..+-
T Consensus 882 P~hG~~W~avS 892 (913)
T KOG0495|consen 882 PTHGELWQAVS 892 (913)
T ss_pred CCCCcHHHHHh
Confidence 53 33454443
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.8e-15 Score=124.96 Aligned_cols=471 Identities=13% Similarity=0.061 Sum_probs=337.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...|-.....-..++++..|.++|++++.-+ ..+...|...+.+-.++.+...|..++++....-...| ..|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44566667777778889999999999998776 66788888888888999999999999999887632222 24444454
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHH
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (504)
.--..|++..|.++|++-.+. .|+...|.+.+..-.+.+.++.|..+|+++.--. |++..|-.....--++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHH
Confidence 555679999999999998876 7899999999999999999999999999988764 567777777777788999999
Q ss_pred HHHHHHHHhhCCCC--CChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCcHHHHH----
Q 048258 169 AAAILRKMGDRGYL--PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR-FSTYLLLMEALYKAGRDVEGDR---- 241 (504)
Q Consensus 169 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~---- 241 (504)
+..+|....+.-.. -+...+......-..+..++.|.-+|+-.++.-.+.. ...|..+...--+-|+......
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999887653110 1122334444444456778888888888887632222 3344444444444555433322
Q ss_pred ----HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHH--------HHhcCCchH
Q 048258 242 ----YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNL--VTFNTLIS--------GHCKDAEVH 307 (504)
Q Consensus 242 ----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~ 307 (504)
-|+..++.++. |-.+|-..+..-...|+.+...++|+..... ++|-. ..|...|- .-....+.+
T Consensus 306 KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 24555555544 7778888888888889999999999988865 34321 12222221 112467888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 308 KTRELLVMLLECGFKPDKFTFNSMIDCL----CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLF 383 (504)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 383 (504)
.+.+++...++. ++....||..+--.| .++.+...|.+++...+. ..|...+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999888874 444555665544333 467888999999988875 4678888999999999999999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 048258 384 QKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG-LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN 462 (504)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 462 (504)
++.++-+ +-+..+|......-...|+.+.|..+|.-+++.. +......|...|+.-...|.+++|..+++++++. .
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t 537 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--T 537 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--c
Confidence 9999874 4467788888777788899999999999888742 1112345666677667889999999999999875 4
Q ss_pred CChhhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 048258 463 PDSYTSNLILETLV-----QQG-----------RFEEAHDIVKTSKE 493 (504)
Q Consensus 463 ~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 493 (504)
+...+|...+..-. +.+ ....|+++|+++..
T Consensus 538 ~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 538 QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 45556666554333 234 56778888887754
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.3e-15 Score=128.05 Aligned_cols=343 Identities=14% Similarity=0.168 Sum_probs=227.6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048258 113 PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (504)
-++.++..+|.++++.-..+.|.+++++...........+||.+|.+-.-... .+++.+|....+.||..|||.++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 36677888888888888888888888888877777788888888765443322 67778888888888888888888
Q ss_pred HHHHccCChhh----HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH-HHHHHHHHHhC----CC----CCCHHHHH
Q 048258 193 TCLVTGLDLNE----TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE-GDRYLNHVFKD----RL----VSNVNSYN 259 (504)
Q Consensus 193 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~ 259 (504)
.+..+.|+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++..+... .. +.+...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 88888887765 45677788888888888888888888887777644 34444444321 11 12445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRD----IAPN---LVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
..+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+..+.|+....+.....|+.|.-.-+.|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 67777778888888877766554431 2222 2335566667777788888888888887776777888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CH--------H-----HHHHHH-------HHHHhCCC
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-DV--------A-----RSLRLF-------QKMQADRI 391 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~-------~~~~~~~~ 391 (504)
++....+.++-.-++|.++...|..-+......++..+++.. +. . -|..++ .++.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 888888888888888888877664333333333333333322 11 0 011111 122222
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHH---HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 048258 392 SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG-LRPDNFSYS---ALIKALIKSGRFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~ 461 (504)
.......+..+-.+.+.|+.++|.+++.-+.+.+ --|-....+ -+++...+.++...|..+++-|...+.
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3344455666666778888888888888776543 122233333 555666677778888888888876543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.84 E-value=4.1e-15 Score=136.54 Aligned_cols=482 Identities=13% Similarity=0.074 Sum_probs=333.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
|...........+...|+.++|..++.++.+.. +.+...|..|...|-+.|+.+++...+-...... +-|...|..+.
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 334445555566677799999999999999887 7789999999999999999999998877776654 45778999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHH----HHHHHHhcC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCN----TLLYRLSNN 163 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 163 (504)
....+.|.+++|.-.|.++.+.++ ++....-.-...|-+.|+...|...|.++....|+.+..-+. ..+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998853 455555666778889999999999999999988754433333 345667778
Q ss_pred CChHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcC---------------------------
Q 048258 164 SMASEAAAILRKMGDR-GYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRG--------------------------- 215 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 215 (504)
++.+.|.+.++..... +-..+...++.++..+.+...++.+...+.......
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999999887663 233466778889999999999999988887776621
Q ss_pred CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 048258 216 VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR--LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
..++..+ ..++-++......+....+........ +.-+...|..+..++...|.+++|+.+|..+......-+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1222223 233334444444444444444444444 4445677888999999999999999999999887555567789
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCChhhHHH
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE--------WGVPPNTITYNI 365 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 365 (504)
..+..+|...|..+.|.+.|+......+ -+...--.|...+.+.|++++|.+.+..+.. .+..|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 9999999999999999999999987632 2445566677788899999999999998652 234455555566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----------------------CCCCHHhHHHHHHHHHccCCHHHHHHHHHHH--
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADR----------------------ISPDIYTFNALIQSFCRMNKIEKAEKAFFSM-- 421 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-- 421 (504)
....+...|+.++-+.+-..|.... .+-........+.+-.+.++.....+-...-
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 6677788888777554444433210 1111122222333333333322222211111
Q ss_pred ----HhCCCCCCc--ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCh---hhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 422 ----LTLGLRPDN--FSYSALIKALIKSGRFDEAKQTFLSMEQNGC--NPDS---YTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 422 ----~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
...|+..+. ..+.-++.++++.+++++|..++..+..... .++. ..-...+.+.+..+++..|..+++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111222221 2344566778888889999988888876432 1222 1223445667778888888888888
Q ss_pred HHHc
Q 048258 491 SKER 494 (504)
Q Consensus 491 ~~~~ 494 (504)
+...
T Consensus 692 ~i~~ 695 (895)
T KOG2076|consen 692 VITQ 695 (895)
T ss_pred HHHH
Confidence 7754
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.3e-14 Score=123.71 Aligned_cols=445 Identities=9% Similarity=0.036 Sum_probs=336.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRS 120 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ 120 (504)
..+...|....+.-..++++..|..+|++..... ..+...|.-.+.+-.+...+..|..++++.... -|-+ ..|.-
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyK 146 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHH
Confidence 3445555555555566788899999999999876 457778888888888999999999999999876 2333 35555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD 200 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (504)
.+..--..|+...|.++|++..+.. |+...|++.+..-.+.+..+.|..++++..- +.|++.+|-.....-.+.|+
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 6666667899999999999999874 5788999999999999999999999999876 36899999999999999999
Q ss_pred hhhHHHHHHHHHhc-CC-CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 048258 201 LNETCGILDTFIKR-GV-KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN-VNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 201 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
...+..+|+...+. |- ......+...+..-.++..++.|.-+|+-++..-+... ...|..+...--+-|+.....+.
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 99999999988875 21 11223344444555567778899999998887755422 44565555555556665444332
Q ss_pred --------HHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH-HHHHHH--------HHHHhcCC
Q 048258 278 --------CREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF-TFNSMI--------DCLCRAHR 340 (504)
Q Consensus 278 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~--------~~~~~~~~ 340 (504)
++.+.+.+ +.|..+|--.+..-...|+.+...++|++.+..-++.+.. .|...| -.-....+
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444443 3477888888888888999999999999998763322221 121111 11135789
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTITYNILIRS----LCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
.+.+.++++..++. +|....||.-+--. ..++.++..|.+++-.++. ..|...+|...|..-.+.+.++.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999985 55566666554443 4567899999999988875 58999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 417 AFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC-NPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+|++.++.+ +-+-.+|......-...|+.+.|..+|+-+++... .-....|...+..-...|.++.|+.+++++++..
T Consensus 459 LYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 459 LYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999975 34567788888777889999999999999997421 1134456666666678899999999999999875
Q ss_pred CCC
Q 048258 496 ISF 498 (504)
Q Consensus 496 ~~~ 498 (504)
-..
T Consensus 538 ~h~ 540 (677)
T KOG1915|consen 538 QHV 540 (677)
T ss_pred ccc
Confidence 433
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.5e-14 Score=121.70 Aligned_cols=427 Identities=12% Similarity=0.118 Sum_probs=302.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhH---HHHHHHHHHcCCCCChhhHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEV---FRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+=|.|+.. ..+|..+.+.-+|+.|.+.|++.+...-..|++..+-.+.-+-. ++.|-.|...| +.+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 34555544 45688888888999998888877777777776665543332221 23344444433 2233333
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhh
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNE 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (504)
+.|+..+ ++-+. .| .+..++..+|.++++--..+.|.+++++........+..+||.+|.+..-..+
T Consensus 191 ---K~G~vAd---L~~E~---~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--- 257 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFET---LP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG--- 257 (625)
T ss_pred ---ccccHHH---HHHhh---cC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc---
Confidence 2343332 22221 22 26678999999999999999999999999988888899999999977554333
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHH
Q 048258 204 TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD----RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR-ATEIC 278 (504)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 278 (504)
.+++.+|....+.||..|++.++.+..+.|+++.|. +++.+|.+.|+.|...+|..++..+.+.++..+ +..++
T Consensus 258 -K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 258 -KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred -HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 788999999999999999999999999999887754 566777888999999999999999999888754 55555
Q ss_pred HHHHhC----CC----CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC----CCcc---HHHHHHHHHHHHhcCCHHH
Q 048258 279 REMRDR----DI----APNLVTFNTLISGHCKDAEVHKTRELLVMLLECG----FKPD---KFTFNSMIDCLCRAHRFED 343 (504)
Q Consensus 279 ~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~ 343 (504)
.++... .+ +.|...|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 12 2245667888889999999999988887665321 2222 2235566677788888999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC-CH--------H--
Q 048258 344 ALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN-KI--------E-- 412 (504)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-- 412 (504)
-...++.|.-.-..|+..+...++++..-.|.++-.-++|.++...|...+...-..++...++.. +. .
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 999999998777788999999999999999999999999999888765555555555555555443 11 0
Q ss_pred ---HHHHHH-------HHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCChhhHHHHHHHHHhc
Q 048258 413 ---KAEKAF-------FSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC----NPDSYTSNLILETLVQQ 478 (504)
Q Consensus 413 ---~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 478 (504)
-|..++ .++... .......+.++-.+.+.|+.++|.+++..+..++- .|.......+...-.+.
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 011111 122222 23445667777788999999999999999965432 23333455667777788
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 048258 479 GRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 479 g~~~~a~~~~~~~~~~~~ 496 (504)
+....|...++-|...+.
T Consensus 575 ~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCHHHHHHHHHHHHHcCc
Confidence 899999999999876553
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=4.5e-14 Score=129.87 Aligned_cols=342 Identities=15% Similarity=0.127 Sum_probs=256.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+.+...|.+|...|-..|+.+++...+-.+...+ +.|...|..+.....+.|++++|.-.|.+..+.. +++....---
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 4566789999999999999999999888777665 6678999999999999999999999999999885 4565555556
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhh----HHHHHHHHHhcCChHHHHHHHHHHHhcC-CCcchhHHHHHHHHHh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEAT----VRSLVHGVFRCLDPHKAFELLIRFMERE-PLTQKLVCNTLLYRLS 161 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 161 (504)
...|-+.|+...|..-|.++.+...+.|..- ....++.+...++-+.|.+.++.....+ ...+...++.++..+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 6778899999999999999998754323332 3334566777888899999999887732 2335567888899999
Q ss_pred cCCChHHHHHHHHHHhhCCCCCChh----------------------hHH----HHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 162 NNSMASEAAAILRKMGDRGYLPESS----------------------TFD----YTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~----------------------~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
+...++.+.............+|.. .+. .+.-++...+..+....+........
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 9999999998888776622222211 111 22233444445555555555555555
Q ss_pred C--CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 048258 216 V--KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 216 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
. ..+...+..+..++...|++.+|+.++..+.......+...|-.+..+|...|..++|.+.|+......+ .+...-
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~R 486 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDAR 486 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-Cchhhh
Confidence 3 3356778999999999999999999999999887777888999999999999999999999999987742 255666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHH--------HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLL--------ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
-.|...+.+.|+.++|.++++.+. ..+..|+..........+.+.|+.++=+.+-..|
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 677788899999999999998854 2334455555556666677777776644444333
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.4e-14 Score=123.88 Aligned_cols=385 Identities=14% Similarity=0.106 Sum_probs=196.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVF 126 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 126 (504)
....+-|.++|++++|++.|.+..+. .|| +..|.....+|...|+++++++......+. .|+. ..+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 33455667778888888888888776 566 667777777788888888888877777765 3333 24555556666
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH---------Hh--hCCCCCChhhHHHHHHHH
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK---------MG--DRGYLPESSTFDYTVTCL 195 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~--~~~~~~~~~~~~~l~~~~ 195 (504)
..|++++|+.-..- .++...+.......-+.+++++ +. ...+.|+.....+....+
T Consensus 195 ~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 67777766532211 1112222111111112222211 11 111234433333333222
Q ss_pred Hcc----------------------------CChhhHHHHHHHHHhcC-CCc--c---------HHHHHHHHHHHHhcCC
Q 048258 196 VTG----------------------------LDLNETCGILDTFIKRG-VKP--R---------FSTYLLLMEALYKAGR 235 (504)
Q Consensus 196 ~~~----------------------------~~~~~a~~~~~~~~~~~-~~~--~---------~~~~~~l~~~~~~~~~ 235 (504)
... ..+..+.+.+.+-.... ..+ + ..++......+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 110 01111222111111000 000 0 1122222223344556
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 236 DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
...+.+-|+.++...+. +...|-.+...|....+.++-...|....+.++. ++.+|..-.+...-.+++++|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665544 2222555555566666666666666666655433 455555555555555666666666666
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 048258 316 LLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD- 394 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 394 (504)
.+...+ .+...|-.+.-+..+.+++++++..|++.++. +|..+..|+.....+...++++.|.+.|+...+. .|+
T Consensus 420 ai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~ 495 (606)
T KOG0547|consen 420 AISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPRE 495 (606)
T ss_pred HhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccc
Confidence 655421 13334444444444566666666666666654 4445556666666666666666666666666553 222
Q ss_pred ------HH--hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 395 ------IY--TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 395 ------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.. +.-.++. +.-.+++..|.++++++++.. +.....|..|...-.+.|+.++|+++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 1111111 123356666666666666542 11234556666666666666666666666554
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=6e-15 Score=125.10 Aligned_cols=399 Identities=13% Similarity=0.125 Sum_probs=245.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCcchh----HHHHHHHHHhc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATV-RSLVHGVFRCLDPHKAFELLIRFMEREPLTQKL----VCNTLLYRLSN 162 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 162 (504)
+-|.......+|+..|+-+.+...-|+.-.+ ..+...+.+..++.+|++.|+..+..-|..+.. ..+.+...+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 3344445566666666666665544554332 234455666666777777776666655544333 23333345566
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCC------------ccHHHHHHHH---
Q 048258 163 NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVK------------PRFSTYLLLM--- 227 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~--- 227 (504)
.|.++.|+..|+...+. .|+..+-..++-++...|+-+...+.|.+++..... |+....+..+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 67777777777666553 456555555555666666666666666666653211 1111111111
Q ss_pred --HHHHhcCC--cHHHHHHHHHHHhCCCCCCHH---------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 228 --EALYKAGR--DVEGDRYLNHVFKDRLVSNVN---------------------SYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 228 --~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
...-+.++ .++++-.--+++.--+.|+-. .--.-.--+.+.|+++.|+++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 11111111 111111111111111111100 00011234566777777777666654
Q ss_pred hCCCCC------------------------------------ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH
Q 048258 283 DRDIAP------------------------------------NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF 326 (504)
Q Consensus 283 ~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (504)
+.+-+. +......-.......|++++|.+.|.+.......-...
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 432111 11111111112234688999999999988763322222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
.|+ +.-.+-..|+.++|++.|-++... ...+..+...+...|....+...|++++.+.... ++.|+..+.-|...|-
T Consensus 527 lfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYD 603 (840)
T ss_pred HHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhh
Confidence 233 233466789999999999887654 2347778888889999999999999999888765 5667889999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH-HHHhcCCHHHHH
Q 048258 407 RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE-TLVQQGRFEEAH 485 (504)
Q Consensus 407 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~ 485 (504)
+.|+-..|.+.+-+--+. ++.+..+...|..-|....-+++++..|++..- +.|+..-|..++. ++.+.|+++.|.
T Consensus 604 qegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred cccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999887655543 566788888888888888889999999999876 6899999987765 556789999999
Q ss_pred HHHHHHHHc
Q 048258 486 DIVKTSKER 494 (504)
Q Consensus 486 ~~~~~~~~~ 494 (504)
++++...++
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999988765
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.2e-14 Score=119.31 Aligned_cols=396 Identities=12% Similarity=0.036 Sum_probs=265.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD-RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGF 90 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 90 (504)
+-....-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+|+++++.-....+. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 445667788999999999999999987 577 888999999999999999999998888876 444 44566666777
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-cC-CC-cchhHHHHHHHHHhc-----
Q 048258 91 CNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-RE-PL-TQKLVCNTLLYRLSN----- 162 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~-~~~~~~~~l~~~~~~----- 162 (504)
-..|++.+|+.=.....-.+.-.|..+- .++.-..+. .|....++-.. .+ |. |......+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIE-PMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 7788888776433222211111121111 111111111 11111111111 11 11 111111111111110
Q ss_pred --------------------CC---ChHHHHHHHHHHhhC-CCCCC-----------hhhHHHHHHHHHccCChhhHHHH
Q 048258 163 --------------------NS---MASEAAAILRKMGDR-GYLPE-----------SSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 163 --------------------~~---~~~~a~~~~~~~~~~-~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
.+ .+..|.+.+.+-... -..++ ..++......+.-.|+.-.+.+-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 11 222333332221110 01111 11222222334456889999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048258 208 LDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIA 287 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (504)
++..+.....+ ...|..+...|....+.++....|..+.+.++. ++.+|..-.+...-.+++++|..=|++..+..+.
T Consensus 349 ~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 349 FDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred HHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 99999875333 333888888999999999999999999998876 7888888888888889999999999999887533
Q ss_pred CChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChhh
Q 048258 288 PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP-----PNTIT 362 (504)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 362 (504)
+...|-.+.-+..+.+.++++...|+..++. ++..+.+|+.....+...++++.|.+.|+..++.... .+...
T Consensus 427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 6667777777778899999999999999876 5667899999999999999999999999999875211 11111
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 363 --YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 363 --~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
.-.++. +.-.+++..|..++++..+.+ +-....+..|...-...|+.++|+++|++...
T Consensus 505 lV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 505 LVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111221 113489999999999999863 23455899999999999999999999998875
No 39
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1e-13 Score=113.96 Aligned_cols=457 Identities=12% Similarity=0.072 Sum_probs=286.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
++-+....++..|+.+++.....+-.-...+-..+..++...|++++|+..+..+.+.. .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677889999999999887654422222333445667788999999999999988765 56777777777777788999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKM 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (504)
.+|..+-....+ ++.....++....+.|+-++-....+.+.+.. .---++.......-.+++|++++...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888776542 44455566677777888777776666654421 22233444555556789999999998
Q ss_pred hhCCCCCChhhHHH-HHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH
Q 048258 177 GDRGYLPESSTFDY-TVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 177 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (504)
+..+ |+-...+. +.-+|.+..-++-+.++++-..+. ++.++...+..+....+.=.-..|..-...+.......
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 7652 33334443 344667777778888888877765 34444555555555554433334444444444332111
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHH
Q 048258 256 NSYNMVIDCFCKV-----NMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNS 330 (504)
Q Consensus 256 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (504)
...+.-.++. .+-+.|++++-.+... .| ..-..++--|.+++++.+|..+...+... .|-......
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKg 323 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKG 323 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHH
Confidence 1122223333 3557778777666554 22 23344555688889999988877765322 222222222
Q ss_pred HHHHH-----HhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 048258 331 MIDCL-----CRAHRFEDALDCLSEMVEWGVPPNTI-TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQS 404 (504)
Q Consensus 331 l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 404 (504)
+..+- ....+..-|...|+-.-..+..-|+. --.++..++.-..++++.+-.+..+..--...|... -.+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHH
Confidence 22221 12223455666666554444333332 233455555566678888888887776533333333 346788
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHH
Q 048258 405 FCRMNKIEKAEKAFFSMLTLGLRPDNFSY-SALIKALIKSGRFDEAKQTFLSMEQNGCNPDS-YTSNLILETLVQQGRFE 482 (504)
Q Consensus 405 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 482 (504)
++..|.+.+|+++|-++....++ |..+| ..+.++|.+.+.++-|+.++-++.. +.+. .....+..-|.+.+.+-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999998776654333 44555 4566788889999888877655432 2222 34455667888889988
Q ss_pred HHHHHHHHHHHcCCCCCCCCC
Q 048258 483 EAHDIVKTSKERGISFKSFPG 503 (504)
Q Consensus 483 ~a~~~~~~~~~~~~~~~~~~~ 503 (504)
-|.+.|..+...+..|+.|.|
T Consensus 479 yaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 479 YAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred HHHHhhhHHHccCCCccccCC
Confidence 888899988888888888865
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1.9e-14 Score=130.18 Aligned_cols=287 Identities=13% Similarity=0.083 Sum_probs=191.0
Q ss_pred cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 198 GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
.|+++.|.+.+....+..-. ....+.....+..+.|+++.|.+++.++.+..+.............+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46666666666554443211 12223333444467777777777777776654332222222335566777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 278 CREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK-------FTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++++.
T Consensus 176 l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7777766533 5666777777777777777777777777766543222 1222333333344556666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc
Q 048258 351 MVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN 430 (504)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 430 (504)
+.+. .+.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..++..+.. +-|.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 6543 3457778888888888999999999999888874 4555322 2333445688888998888888762 2334
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888889999999999999998874 688888888889999999999999988887653
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.4e-14 Score=131.95 Aligned_cols=293 Identities=13% Similarity=0.033 Sum_probs=199.0
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (504)
...|+++.|.+.+.+..+.. +.+...+.....+....|+++.|.+++.++.+..+.+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34677777777777666543 11234445556777777888888888888776554433334444567777888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHH
Q 048258 276 EICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC---LCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~ 352 (504)
..++.+.+..+. +...+..+...+...|+++.+.+.+..+.+.+..+.......-..+ ....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888888877533 5667778888888888888888888888877543222221111111 122233333344554444
Q ss_pred HCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHh---HHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 048258 353 EWGV---PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYT---FNALIQSFCRMNKIEKAEKAFFSMLTLGL 426 (504)
Q Consensus 353 ~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 426 (504)
+... +.+...+..+...+...|+.++|.+.+++..+.. |+... ...........++.+.+.+.+++..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 4321 2377788888889999999999999999998863 34331 111122233457888889998888875
Q ss_pred CCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 427 RPDN---FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 427 ~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.|+. ....++...+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++....
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4544 4556889999999999999999995443335788888889999999999999999999987543
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.8e-13 Score=113.07 Aligned_cols=365 Identities=14% Similarity=0.055 Sum_probs=249.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH--H
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF--D 189 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 189 (504)
..|...+-.....+.+.|....|...|.......|- .-..|..|.... .+.+ ....+.. +...+...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~li---t~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELI---TDIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhh---chHH----HHHHHHh-cCcccchHHHHH
Confidence 345555555555666778888888888877765432 222333332211 1111 1111111 111122211 1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCK 267 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 267 (504)
.+..++-...+.++++.-.+...+.|++.+...-+..+.+.....++++|+..|+.+.+..|- -|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 233455566678888888888888888877777777788888889999999999999887643 2566666655 333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 268 VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDC 347 (504)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (504)
..+ ..+.++.+-...-.+--+.|...+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|++.
T Consensus 310 ~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 322 22222222221111224467777888888888999999999998887532 456777788889999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048258 348 LSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLR 427 (504)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 427 (504)
++.+++.. |.|...|-.+.++|.-.+-..-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|.+.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99998874 5588899999999999999999999999998863 5577899999999999999999999999998876 4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 428 PDNFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNPD--SYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.+...+..+...+-+.++.++|.+.+++.++. |...+ ..+..-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 45677888999999999999999988887652 22222 22334456667778888888776665543
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=3.7e-17 Score=141.44 Aligned_cols=262 Identities=20% Similarity=0.209 Sum_probs=110.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDR-LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD 303 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (504)
.+...+.+.|++++|.+++....... ++.+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55777888888888888886554443 3446666666777777888999999999998877543 55667777776 688
Q ss_pred CchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG-VPPNTITYNILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~ 382 (504)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999888776554 2466777788888889999999999999877532 345777888888999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN 462 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 462 (504)
++++.+.. +.|....+.++..+...|+.+++.+++....+.. +.|+..+..+..++...|++++|..++++..... +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99998863 3357788889999999999999888888887753 4566778889999999999999999999988752 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 463 PDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 463 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|+.+...++.++...|+.++|.++..++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4788888999999999999999998887654
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=5.9e-17 Score=140.22 Aligned_cols=260 Identities=17% Similarity=0.092 Sum_probs=86.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQ-CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.+...+.+.|+++.|+++++...... .+.++..|..+.......++++.|++.++++...+. -++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 55788888888888888886544333 244555566666666777888888888888887652 356667777766 678
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP-LTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
+++++|.++++...+.. +++..+..++..+...++++++.++++.+..... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766552 4556666777777888888888888887665332 23555666677777777777777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
+++..+.... +......++..+...|+.+++.++++...+.. +.++..+..+..++...|+.++|..++++..+..+.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 7777665221 45556666666777777777666666665553 334445556666666666666666666666665433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
|+.....+..++...|+.++|.++..+.
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccc
Confidence 6666666666666666666666666554
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.4e-12 Score=108.87 Aligned_cols=423 Identities=10% Similarity=0.039 Sum_probs=284.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHH---------------HhcCCHHHHHHHH----HHHHh--
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGI---------------CRIGVVDEALRLV----KQMEG-- 73 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~g~~~~a~~~~----~~~~~-- 73 (504)
.+.+.+..+..++.|.-.++..... -..|..+..-+ .+.+.+..-...| ..+..
T Consensus 83 ~laks~fd~kEf~Raa~fL~~~~s~-----k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~~ 157 (559)
T KOG1155|consen 83 LLAKSYFDCKEFERAAFFLQNCKSK-----KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESKH 157 (559)
T ss_pred hhHhhhhhhHHHHHHHHHHHhcchH-----HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHHH
Confidence 5778899999999998888876631 11121111111 1111222111111 22222
Q ss_pred CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHH
Q 048258 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVC 153 (504)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (504)
.+...|...+-...-.+.+.|..+.|++.|......- +..-..|..|..... + .+....+....+.......
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~----~e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---D----IEILSILVVGLPSDMHWMK 229 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---h----HHHHHHHHhcCcccchHHH
Confidence 2234454444444444557788899999988887651 223334444433322 2 2222223222222111111
Q ss_pred H-HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCC--CccHHHHHHHHHHH
Q 048258 154 N-TLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGV--KPRFSTYLLLMEAL 230 (504)
Q Consensus 154 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 230 (504)
. -+..++....+.+++.+-.......|+.-+...-+....+.....|+++|+.+|+++.+... -.|..+|..++..-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1 23355666668888888888888888876666667777788889999999999999998731 12566777666543
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHH
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTR 310 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (504)
....+..- +-+.+...+ +--+.+...+.+.|+-.++.++|..+|+...+.++. ....|+.+.+-|....+...|.
T Consensus 310 ~~~skLs~---LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 NDKSKLSY---LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hhhHHHHH---HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 32222111 111111111 223456667788888899999999999999988644 6678999999999999999999
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR 390 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (504)
+-++...+.. +.|-..|-.+.++|.-.+-+.-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|.+....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999875 4488899999999999999999999999999873 6688999999999999999999999999999876
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 391 ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL----GLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
..+...+..|...|-+.++..+|...|++.++. |...+ .....-|..-+.+.+++++|.........
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 336688999999999999999999999887762 22111 12222344556677888887776655544
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=7.5e-14 Score=127.16 Aligned_cols=291 Identities=10% Similarity=0.005 Sum_probs=192.2
Q ss_pred hcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 161 SNNSMASEAAAILRKMGDRGYLPESS-TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
...|+++.|.+.+.+..+. .|+.. .+-....+....|+.+.+.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467777777777666554 23322 23344556666778888888877776543222223344457777788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---hcCCchHHHHHHHHH
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFN-TLISGH---CKDAEVHKTRELLVM 315 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 315 (504)
...++.+.+..|. ++.++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888888877755 6677778888888888888888888888877643 222221 111111 222222323334444
Q ss_pred HHHCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 316 LLECGF---KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT---YNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 316 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+.+... +.++..+..+...+...|+.++|..++++..+.. |+... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 433321 1367788888888999999999999999998863 33321 112222223457788888888888775
Q ss_pred CCCCCH--HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 390 RISPDI--YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 390 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 3344 566788888999999999999999533333478888888999999999999999999988653
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.3e-13 Score=124.75 Aligned_cols=254 Identities=12% Similarity=0.050 Sum_probs=137.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHH
Q 048258 126 FRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETC 205 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (504)
.+.|+++.|.+.+.++.+..+.............+...|+++.|.+.++++.+.... +......+...|.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444333221111112233444444455555544444443211 3334444444555555555555
Q ss_pred HHHHHHHhcCCCccH-------HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 206 GILDTFIKRGVKPRF-------STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEIC 278 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (504)
+++..+.+.+..++. .++..++.......+.+...++++.+.+.- +.++.....+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555544322111 122223333333333444444444443332 236666677777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048258 279 REMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP 358 (504)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (504)
++..+. +|+... .++.+....++.+++.+..+...+.. +-|+..+..+...|.+.+++++|.+.|+...+. .|
T Consensus 287 ~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P 359 (398)
T PRK10747 287 LDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP 359 (398)
T ss_pred HHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 777664 333321 12233344577777777777776653 235566667777777777777777777777764 56
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 359 NTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
+...+..+...+.+.|+.++|.+++++...
T Consensus 360 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777777777777777777777777654
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-12 Score=113.57 Aligned_cols=439 Identities=12% Similarity=0.032 Sum_probs=206.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+..-+..+.+-+..+.++..|.-+-+++......|+.. -.+.+++.-.|++.+|..+...-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34556777788888899999999999888765444444 44677788888999998887765433 457778888888
Q ss_pred HHHhcCChhhHHHHHHHHHHc--C-----------CCCChhh-----------HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 89 GFCNAKRVAEVFRVLEIMKER--N-----------VCPNEAT-----------VRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~--~-----------~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
++.+..++++|..++...... . +.+|..- +-.-...|....+.++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 888999999999988822110 0 1111110 011123344556677777777776654
Q ss_pred CCCcchhHHHHHHHHHhc-----------------CCChHHHHHHHHHHhh-C----------------CCCCChhhHHH
Q 048258 145 EPLTQKLVCNTLLYRLSN-----------------NSMASEAAAILRKMGD-R----------------GYLPESSTFDY 190 (504)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~-----------------~~~~~~a~~~~~~~~~-~----------------~~~~~~~~~~~ 190 (504)
... .-..+..++....- .+...+-++.+-++.. . +..-+......
T Consensus 171 D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 171 DAK-CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred chh-hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 322 11122222211111 0111111111111100 0 00111122222
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048258 191 TVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (504)
-..-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+-.++.+..|. .+.+|-++.-.|...|.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcC
Confidence 2233334444455555444444442 333333333333444444444444444444443332 34444444444444455
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 271 MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
..+|.+.|.+....+.. -...|-.+.+.|.-.+..++|...+....+.- +-....+--+.--|.+.+..+.|.+.|.+
T Consensus 328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 55555555444333211 12344444444555555555554444443321 00111111122224444455555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 048258 351 MVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD----R-ISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 424 (504)
.... .|.|+..++-+.......+.+.+|..+|+..... + -.+ -..+++.|..+|.+.+.+++|+..+++.+..
T Consensus 406 A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4443 2334444444444444444555555555444321 0 000 1123444455555555555555555555443
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 425 GLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 425 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
. +.+..++.++.-.|...|+++.|++.|.+.+.
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 2 33444444555555555555555555555444
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.9e-13 Score=108.61 Aligned_cols=220 Identities=12% Similarity=0.112 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCh
Q 048258 58 IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE------ATVRSLVHGVFRCLDP 131 (504)
Q Consensus 58 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 131 (504)
+.+.++|+++|-+|.+.. +.+..+..+|.+.|-+.|+.+.|+.+.+.+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 457778888888887753 334556667777777778888888888877765 332 1334455556666666
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHccCChhhHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPES----STFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
+.|+.+|..+.+.+. ........|+..|-...+|++|+++-+++...+..+.. ..|-.+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 666666666555322 13344445555566666666666555555544332221 1222233333334444444444
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 208 LDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+.+..+.+ +..+.+-..+.+.....|+++.|.+.++.+.+.++.--..+...+..+|...|+.++....+..+.+
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444432 2223333334444444444444444444444444333333444444444444444444444444443
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.5e-14 Score=124.77 Aligned_cols=284 Identities=12% Similarity=-0.009 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcCChhhHHHH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APNVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
+.++|+..|+..... +..+.++...+..+|...+++++|..+|+.+.+... --+..+|...+--+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 445555666553332 233344555555666666666666666666554420 113344444443221 1 111111
Q ss_pred HH-HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 048258 103 LE-IMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181 (504)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (504)
+. .+... -+..+.+|..+..+|.-+++.+.|++.|++..+.+|. ...+|+.+.+-+....++|.|...|+..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al---- 482 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL---- 482 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh----
Confidence 11 11111 1224445555555555555555555555555554433 33444444444444445555555555444
Q ss_pred CCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048258 182 LPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMV 261 (504)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 261 (504)
... +-+..+|..+...|.+.++++.|.-.|+++++.++. +......+
T Consensus 483 -------------------------------~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~ 529 (638)
T KOG1126|consen 483 -------------------------------GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHI 529 (638)
T ss_pred -------------------------------cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhh
Confidence 321 122334445555555555555555555555555443 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 262 IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
...+.+.|+.|+|+.++++....+.+ |+..--..+..+...+++++|+..++++.+. ++-+...+..+...|-+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 55555555555566555555554433 3333333344444555555666555555554 122344455555555555666
Q ss_pred HHHHHHHHHHHHC
Q 048258 342 EDALDCLSEMVEW 354 (504)
Q Consensus 342 ~~a~~~~~~~~~~ 354 (504)
+.|+.-|.-+.+.
T Consensus 608 ~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 608 DLALLHFSWALDL 620 (638)
T ss_pred hHHHHhhHHHhcC
Confidence 6665555555554
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=6.9e-13 Score=107.75 Aligned_cols=289 Identities=11% Similarity=0.109 Sum_probs=179.8
Q ss_pred CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 048258 199 LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSN---VNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 275 (504)
++.++|.+.|-+|.+.. +.+..+...+...+.+.|..+.|+++.+.+.+...-+. ......+.+-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34444444444444432 22334445555555555666666665555554321111 123344566677777788888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 276 EICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK----FTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
.+|..+.+.+.. -......++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888777765422 3456667777787888888888887777766544332 24555555666677788888888888
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 352 VEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
.+.+ +..+..-..+.+.....|+++.|++.++.+.+.+..--..+...|..+|...|+.++...++.++.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 7764 335555566777788888888888888888877544445677778888888888888888888887753 3333
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ---QGRFEEAHDIVKTSKER 494 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 494 (504)
.-..+...-....-.+.|...+.+-+.+ +|+...+..++..-.. .|...+-...+..|...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3344444333333455566555555543 6788777777765543 34566666667766644
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=6.5e-11 Score=105.38 Aligned_cols=472 Identities=11% Similarity=0.083 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVD-QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+.+|...+..+.++|+....+.+|++.+.. .+......|...+......|-++.++.++++..+. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666777777777777777777776643 22334556666676666677777777777777654 2333455556
Q ss_pred HHHhcCChhhHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 048258 89 GFCNAKRVAEVFRVLEIMKERN------VCPNEATVRSLVHGVFRCLDP---HKAFELLIRFMEREPLTQKLVCNTLLYR 159 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (504)
.++..+++++|.+.+....... .+.+...|..+.....+.-+. -...++++.....-+..-...|.+|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6666667666666666554321 112222333333333322111 1122223333322222233344555555
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH---------------------------------------------
Q 048258 160 LSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTC--------------------------------------------- 194 (504)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------------- 194 (504)
|.+.|.++.|.++|++....- .+..-|..+...
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 555555555555544433220 011111111111
Q ss_pred ---------------------HHccCChhhHHHHHHHHHhcCCCc------cHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 195 ---------------------LVTGLDLNETCGILDTFIKRGVKP------RFSTYLLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 195 ---------------------~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
-...|+..+.+..+.++.+. +.| -...+..+...|-..|+.+.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 11223444455555555443 111 12345666677777777777777777776
Q ss_pred hCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------------ChhhHHHHHHHHhcCCchH
Q 048258 248 KDRLVSN---VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-----------------NLVTFNTLISGHCKDAEVH 307 (504)
Q Consensus 248 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~ 307 (504)
+.....- ..+|......-.+..+++.|+++.+....-.-.| +...|...++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 6543321 2345555555566667777777666554321110 2223444444444556667
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh---cCCHHHHHHHH
Q 048258 308 KTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-TYNILIRSLCA---IGDVARSLRLF 383 (504)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~ 383 (504)
....+|+++....+. ++...-.....+-.+.-++++.+++++-+..-..|+.. .|+..+.-+.+ ...++.|..+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777777777655432 22222222222334445666666666555442233332 44544444332 22567777777
Q ss_pred HHHHhCCCCCCHHhHHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 384 QKMQADRISPDIYTFNALI--QSFCRMNKIEKAEKAFFSMLTLGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
++..+ +.+|...-+-.|+ ..--+.|-...|..+++++... +++. ...|+..|.-....=-+...+.+|+++++.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 77776 4455433222222 1122446666666666665443 2222 233444444333322234445555555553
Q ss_pred CCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 460 GCNPDSYTSN---LILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 460 ~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
-|+...-. .....-++.|..+.|+.++....+
T Consensus 652 --Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 --LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred --CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 34333222 223334455666666666655444
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.3e-12 Score=111.75 Aligned_cols=425 Identities=12% Similarity=0.042 Sum_probs=294.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC------
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL--GY------ 76 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~------ 76 (504)
|+.-|+..--.+++.+.-.|+++.|..+...-.-. ..|..+.......+.+..+|++|..++...... .+
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 34455555556889999899999998887665322 467777778888889999999999998832110 00
Q ss_pred -----CCcHHh----HHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------------
Q 048258 77 -----APNVYT----YTIL-------IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR------------- 127 (504)
Q Consensus 77 -----~~~~~~----~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 127 (504)
.+|..- -+.- ...|....+.++|...|.+....++. ....+..++....-
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 111110 0011 12234445677777777776654321 11222222211110
Q ss_pred ----cCC-hHHHHHHHHHHHhc----------------CCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChh
Q 048258 128 ----CLD-PHKAFELLIRFMER----------------EPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESS 186 (504)
Q Consensus 128 ----~~~-~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 186 (504)
.+. .+....+|+..... +...+......-...+...+++.+..++++.+.+.. ++...
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~ 279 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLP 279 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcc
Confidence 111 11112222211000 111233344445566778899999999999988763 34666
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 187 TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
.+..-|.++...|+..+-..+=.++.+. .|..+.+|..++--|...|+..+|.++|.+....++. -...|-.+...|.
T Consensus 280 ~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa 357 (611)
T KOG1173|consen 280 CLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFA 357 (611)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhh
Confidence 6666777899999988888887788776 3667788999999999999999999999998876544 4567888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 048258 267 KVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALD 346 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (504)
-.|..|+|+..+....+.= +-..--+--+.--|.+.++...|.+.|....... +.|+..++-+.-.....+.+.+|..
T Consensus 358 ~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALK 435 (611)
T ss_pred hcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHH
Confidence 9999999999987776541 1111122334445788999999999999988763 4588888888888888999999999
Q ss_pred HHHHHHHC----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 048258 347 CLSEMVEW----G--VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 347 ~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 420 (504)
+|+..... + ...-..+++.|..+|.+.+.+++|+..+++..... +.+..++.++.-.|...|+++.|.+.|.+
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99987731 0 01133468899999999999999999999999873 66888999999999999999999999999
Q ss_pred HHhCCCCCCcccHHHHHHHH
Q 048258 421 MLTLGLRPDNFSYSALIKAL 440 (504)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~ 440 (504)
.+- +.|+..+...++..+
T Consensus 515 aL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 515 ALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHh--cCCccHHHHHHHHHH
Confidence 987 478876666666533
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.9e-14 Score=126.15 Aligned_cols=288 Identities=10% Similarity=0.028 Sum_probs=226.1
Q ss_pred CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 048258 199 LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNMMDRATE 276 (504)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 276 (504)
-+..+|+..|..+..+ +..+..+...+..+|...+++++|.++|+.+.+..+. .+...|...+..+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885544 4455688899999999999999999999999876542 366777777654422 23344
Q ss_pred HHH-HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 277 ICR-EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 277 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
++. .+.+. -+-.+.+|..+..+|.-+++++.|++.|++..+.+. -...+|+.+..-+.....++.|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 443 33333 244779999999999999999999999999988642 267788888888888999999999999998763
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 048258 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSA 435 (504)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 435 (504)
. -+..+|..+...|.+.++++.|+-.|+++.+.+ +-+......+...+.+.|+.++|+++++++.... +.|+..--.
T Consensus 486 ~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 P-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred c-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2 245567778889999999999999999999865 4456677778888899999999999999999864 334444445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGIS 497 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 497 (504)
-+..+...+++++|...++++.+. ++.+..++..+++.|.+.|+.+.|..-|.-+.+....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 667788899999999999999985 3335667888899999999999999999888876543
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.5e-12 Score=107.81 Aligned_cols=292 Identities=11% Similarity=0.091 Sum_probs=143.8
Q ss_pred CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHH
Q 048258 163 NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (504)
.|++..|++...+-.+.+-. ....|.....+.-..||.+.+-.++.+..+....++........+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56666666666555444322 12233333444455556666666655555543334444455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK 322 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (504)
..++.+..+. ++.......++|.+.|++.....++..+.+.+.-.+...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5555555544 45555555555555555555555555555554432221100
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 323 PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
....++..+++-....+..+.-...|+..... .+.++..-..++.-+...|+.++|.++..+..+.+..|+. ..+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~- 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL- 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-
Confidence 00123333333333333333334444444332 2334444445555555556666666655555555444431 111
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 048258 403 QSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFE 482 (504)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 482 (504)
-.+.+-++...-.+..++..+.- +-++..+.+|...|.+.+.+.+|...|+...+. .|+..++..+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 12334455555555544444331 222344555555566666666666666655542 455556666666666666666
Q ss_pred HHHHHHHHHH
Q 048258 483 EAHDIVKTSK 492 (504)
Q Consensus 483 ~a~~~~~~~~ 492 (504)
+|.+..++..
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.6e-12 Score=107.76 Aligned_cols=287 Identities=12% Similarity=0.037 Sum_probs=188.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHH
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCG 206 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (504)
..|++.+|++...+..+.+.. ....|..-..+....|+.+.+-.++.+..+....++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999997776654 4556666778888899999999999999887555666677778888999999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 048258 207 ILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVN-------SYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
-+.++.+.+ +-.+.+.....++|.+.|++.....+...+.+.+.-.+.. +|+.+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999886 4567888889999999999999999999999988664443 34444444444444444444444
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 280 EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+ ...++ .+.+-++...-++..+...+. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 44332 222444445555555566666666666666555544333 11111 234455555555555544443 2334
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455555666666666666666666655543 45666666666666666666666666555543
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=1.4e-10 Score=103.57 Aligned_cols=473 Identities=13% Similarity=0.090 Sum_probs=311.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+|-...+-.-+--+...+++...+++.+.+.+.. +-...+.....-.+...|+-++|..........+ ..+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHH
Confidence 3333333333444556889999999999998753 5456666655556677899999999999888765 3477789988
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
.-.+-...++++|++.|..+...+ +.|...+..+.-.-++.++++.....-..+.+..+. ....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence 877778899999999999999875 346678888887778889999888888888777554 556788888888899999
Q ss_pred HHHHHHHHHHhhCC-CCCChhhHHHHH------HHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 167 SEAAAILRKMGDRG-YLPESSTFDYTV------TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 167 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
..|..+++...+.. ..|+...+.... ....+.|..+.|.+.+...... +......-..-...+.+.++.++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999887654 345666554433 3445678888888777665443 112223334445677889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHhc-CCchHHHHHHHHHHH
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT-EICREMRDRDIAPNLVTFNTLISGHCK-DAEVHKTRELLVMLL 317 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 317 (504)
..++..++...+. +...|..+..++.+..+.-+++ .+|....+.- |.......+--.... ..-.+....++....
T Consensus 239 ~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9999999987544 4444555555554333444444 6666665541 111111111111112 222344455666667
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCChhhH--HHHHHHHHhcCCHHHHHH
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV----EWG----------VPPNTITY--NILIRSLCAIGDVARSLR 381 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~ 381 (504)
+.|+++ ++..+.+.|-.-...+-..++...+. ..| -+|.+..| ..++..+-..|+++.|..
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777653 33334333322221111111111111 111 14555544 456778889999999999
Q ss_pred HHHHHHhCCCCCCHH-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 382 LFQKMQADRISPDIY-TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
+++.+..+ .|+.. .|..=.+.+...|++++|..++++..+.+ .+|...-..-+.-..+.++.++|.++.......|
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99999986 56644 66666788999999999999999999875 4554443355566678999999999999998776
Q ss_pred CCC--C---h-hhHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 048258 461 CNP--D---S-YTSNL--ILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 461 ~~~--~---~-~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
... + . -.|.. -+.+|.++|++-.|.+-+....+
T Consensus 470 ~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 470 FGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 411 1 1 12222 24678888888777766655443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.62 E-value=8.7e-10 Score=98.44 Aligned_cols=319 Identities=12% Similarity=0.132 Sum_probs=211.0
Q ss_pred CCChHHHHHHHHHHhhCCCCCC------hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhc
Q 048258 163 NSMASEAAAILRKMGDRGYLPE------SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR---FSTYLLLMEALYKA 233 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 233 (504)
.|+..+....|.+.... +.|. ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|...+..-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 34455555556555432 2222 23577788889999999999999999988654332 45666667777788
Q ss_pred CCcHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 048258 234 GRDVEGDRYLNHVFKDRLV-----------------SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTL 296 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (504)
.+++.|..+.+.+....-. .+...|...+..--..|-++....+++.+.+..+. ++...-..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 8899999988877643211 12344555666666778899999999999887654 33332222
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDK-FTFNSMIDCLCR---AHRFEDALDCLSEMVEWGVPPNTIT--YNILIRSL 370 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 370 (504)
...+-...-++++.++|++-+..-..|+. ..|+..+.-+.+ ....+.|..+|++..+ +.+|...- |-.....-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 23344455678888888876655434444 356666555443 3468999999999999 56655432 22222333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH---HHHHHhcCC
Q 048258 371 CAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSAL---IKALIKSGR 445 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~ 445 (504)
.+.|-...|+++++++... +++. ..+||..|.-....--+.....+|+++++. -|+...-... ...=.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 4568889999999998764 4443 347888777665555567778899999885 5665543332 334467899
Q ss_pred hhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 446 FDEAKQTFLSMEQNGCNP--DSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 446 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
++.|+.++....+. ..| +...|...-..-.+.|+-+-..+++
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999888765 344 5566777777778888854444443
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.60 E-value=6.1e-12 Score=115.77 Aligned_cols=466 Identities=13% Similarity=0.057 Sum_probs=245.8
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 3 FLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
..|+.||..+|.++|.-|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+. .|-+.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 4699999999999999999999999998 8888887776777788888888887777776664 567778
Q ss_pred HHHHHHHHHhcCChhh---HHHHHHHHHH----cCCC-CChhhH-------------HHHHHHHHhcCChHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAE---VFRVLEIMKE----RNVC-PNEATV-------------RSLVHGVFRCLDPHKAFELLIRF 141 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~-~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~ 141 (504)
|..|..+|.+.|+... ..+.++.+.. .|+. |....+ ...+....-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888888887544 2222222221 1211 111110 01122222233334444333322
Q ss_pred HhcCCCcchhHHHHHHHHHhcCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccH
Q 048258 142 MEREPLTQKLVCNTLLYRLSNNS-MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRF 220 (504)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (504)
........... .++-+.... .+++-..+.+...+ .|++.++..++.+....|+.+.|..++..|.+.|++.+.
T Consensus 166 Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 21111100011 122221111 12222222222222 356666666666666666666666666666666665555
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH------------------------HHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR------------------------ATE 276 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------a~~ 276 (504)
.-|-.++-. .++..-+..+..-+...|+.|+..++...+..+..+|.... |.+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 544444433 44555555555555555666665555554444444322111 111
Q ss_pred HHH------------HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCC-
Q 048258 277 ICR------------EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG---FKPDKFTFNSMIDCLCRAHR- 340 (504)
Q Consensus 277 ~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~- 340 (504)
.++ +..-.|+.....+|....... .+|.-+....+...+...- ...++..|..++.-|.+.-+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 111112221222333222221 2455555555555554211 11233444444444432111
Q ss_pred ---------------------HHHHHHHHHHHHHCCCCCCh----------------------------hhHHHHHHHHH
Q 048258 341 ---------------------FEDALDCLSEMVEWGVPPNT----------------------------ITYNILIRSLC 371 (504)
Q Consensus 341 ---------------------~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~ 371 (504)
.....+..... .||. ..-+.++..++
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 01111111111 1111 01122333343
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChhHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL--GLRPDNFSYSALIKALIKSGRFDEA 449 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 449 (504)
..-+..++...-+..... . =...|..|+.-+......+.|..+.++.... .+..|...+..+.+.+.+.+....+
T Consensus 471 se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 333444444333333221 1 1256788888888888899999888887643 2344556678888889999999999
Q ss_pred HHHHHHHHhcCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048258 450 KQTFLSMEQNGC-NP-DSYTSNLILETLVQQGRFEEAHDIVKTSKERGISF 498 (504)
Q Consensus 450 ~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 498 (504)
..+++++.+.-. .| ...++..++......|+.+.-.++.+-+...|+.-
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999998876321 22 23455667777778899988888888888777654
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=8.2e-10 Score=100.76 Aligned_cols=378 Identities=14% Similarity=0.050 Sum_probs=222.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh-hhHH
Q 048258 111 VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPES-STFD 189 (504)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 189 (504)
+.-+...|..+.-+...+|+++.+-+.|++.+..... ....|+.+...+...|....|..++++.......|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445566666666666777777777777666543222 3455666666666666666676666665443322322 2222
Q ss_pred HHHHHHHc-cCChhhHHHHHHHHHhc--CC--CccHHHHHHHHHHHHhc-----------CCcHHHHHHHHHHHhCCCCC
Q 048258 190 YTVTCLVT-GLDLNETCGILDTFIKR--GV--KPRFSTYLLLMEALYKA-----------GRDVEGDRYLNHVFKDRLVS 253 (504)
Q Consensus 190 ~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 253 (504)
.....|.+ .+..++++++-.++.+. +. ...+..+..+.-+|... ....++.+.++...+.++.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22333332 35556666655555542 11 11223333333333321 1133455556666555543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC-CCCc---------
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLEC-GFKP--------- 323 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------- 323 (504)
|+.+...+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 333333334445556667777777776666644456666666666666667777777666655432 1100
Q ss_pred ---------cHHHHHHHHHHHH-----------------------hcCCHHHHHHHHHHHH--------HCC--------
Q 048258 324 ---------DKFTFNSMIDCLC-----------------------RAHRFEDALDCLSEMV--------EWG-------- 355 (504)
Q Consensus 324 ---------~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~-------- 355 (504)
...|...++..+- ...+..++......+. ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011111111110 0011111111111110 001
Q ss_pred -CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 048258 356 -VP--PN------TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL 426 (504)
Q Consensus 356 -~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 426 (504)
.. |+ ...|......+.+.+..++|...+.+.... .+.....|......+...|.+.+|.+.|......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l-- 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL-- 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--
Confidence 11 11 113445566777888888898888888765 3456667777778888999999999999998885
Q ss_pred CCC-cccHHHHHHHHHhcCChhHHHH--HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 427 RPD-NFSYSALIKALIKSGRFDEAKQ--TFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 427 ~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.|+ ..+..++..++.+.|+..-|.. ++..+.+.+ +.+...|..++..+.+.|+.++|.+.|..+.+.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 555 5678899999999999888877 999999864 457889999999999999999999999998875
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=7.1e-11 Score=97.56 Aligned_cols=415 Identities=13% Similarity=0.134 Sum_probs=210.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.++...+...|++++|..+|..+.+.. .++...+..|.-.+.-.|.+.+|..+-+...+ ++..-..++..-.+.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHh
Confidence 346677889999999999999988765 56777777777777778999999988776543 333334445555577
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHH-HHHHHhcCCChHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNT-LLYRLSNNSMASEAAAI 172 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~ 172 (504)
++-++...+.+.+... ..--.++.......-.+.+|.++|.+++..++.. ...|. +.-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey--~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY--IALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh--hhhHHHHHHHHHhcchhhhHHHH
Confidence 7777776666666532 2333445555556667889999999988875542 22332 33456677777777777
Q ss_pred HHHHhhCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----CCcHHHHHHHHHH
Q 048258 173 LRKMGDRGYLPESS-TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA-----GRDVEGDRYLNHV 246 (504)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~ 246 (504)
++-.+.. .||+. ..+..+....+.-+-..|..-.+.+...+-.. .-.+.-+++. ..-+.|++++--+
T Consensus 208 l~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 208 LKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 7766654 23333 23333322222222222233233333222110 0011111111 2234445444443
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-----hcCCchHHHHHHHHHHHHCCC
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH-----CKDAEVHKTRELLVMLLECGF 321 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~ 321 (504)
.+.- +..--.++-.|.+.++..+|..+.+++..- .|-......++.+- .......-|...|...-+.+.
T Consensus 281 ~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 281 MKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred HhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 3321 122223444566666666666666554321 22222222222211 111223344444444333332
Q ss_pred CccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 048258 322 KPDKF-TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNA 400 (504)
Q Consensus 322 ~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (504)
.-|.. --..+.+++.-..++++.+..++.+...-...|...+ .+..+++..|++.+|+++|-++....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 22211 1122333333444566666666665554222233333 355566666666666666665554433333333344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS-YSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
|.++|.+.+.++.|++++-++-. +.+..+ ...+...|.+.+++=-|.+.|..+..
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 45556666666666665433321 111222 22333445555555555555555544
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=5.3e-10 Score=99.91 Aligned_cols=433 Identities=14% Similarity=0.083 Sum_probs=286.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.|..++.. ...+++...+++.+.+.+. .+....+.....-.+...|+-++|..........++ -+...|..+.-.+.
T Consensus 10 lF~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 34444444 4678999999999998874 344455555555556778999999999888887644 36678888888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHH
Q 048258 127 RCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETC 205 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 205 (504)
...++++|.+.|......++. +...+.-+...-.+.++++.....-..+.+. .| ....|..++.++.-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998876 6677776666666777777776666666553 23 4456777888888899999999
Q ss_pred HHHHHHHhcCC-CccHHHHHHH------HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 206 GILDTFIKRGV-KPRFSTYLLL------MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEIC 278 (504)
Q Consensus 206 ~~~~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (504)
.+++...+... .|+...+... .......|..++|.+.+......-.. ....-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999888752 4555544332 23445677778887766655433211 2223334556788999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHH-HHhcCCchHHHH-HHHHHHHHCCCCccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 279 REMRDRDIAPNLVTFNTLIS-GHCKDAEVHKTR-ELLVMLLECGFKPDKFTFNS-MIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
..+... .||...|..... ++.+-.+..++. .+|....+.- |....-.. =++......-.+..-.++..+.+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 999987 456665555444 443333333333 5666554431 11111111 1111112223445556677777887
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHhH--HHHHHHHHccCCHHHHHHHHH
Q 048258 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQ----ADR----------ISPDIYTF--NALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~ 419 (504)
+++- +..+...|-.-...+-..++...+. ..| -+|+...| -.++..+-..|+++.|..+++
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7643 3333333322211111111111111 111 14555444 456677889999999999999
Q ss_pred HHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 420 SMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 420 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
.++.+ .|+ ...|..-.+.+...|++++|..++++..+.. .||..+-..-+.-..++++.++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99986 565 3445555678899999999999999999864 56777777888888999999999999998888764
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=4.8e-13 Score=108.82 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
-+.+..+|.+.|.+.+|.+.++...+. .|-+.||..|-++|.+..+++.|+.++.+-.+. .+-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999998876 677888999999999999999999999998876 33455566778889999
Q ss_pred cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHH
Q 048258 128 CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
.++.++|.++|+.+.+..+. ++.....+...|.-.++++-|+.+|+++++.|+. ++..|..+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999988665 5666666777788899999999999999999887 888999999999999999999999
Q ss_pred HHHHHhcCCCcc--HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 208 LDTFIKRGVKPR--FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 208 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
|++....--.|+ .++|..+.......|++..|.+.|+..+..+.. +...++.+.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 998887644443 467888888888899999999999998887655 6778888888888999999999999887765
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.9e-09 Score=95.45 Aligned_cols=222 Identities=12% Similarity=0.150 Sum_probs=141.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC- 91 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 91 (504)
.-+=+..+...|++++|.+...++...+ +.+...+..-+-++.+.++|++|+.+.+.-... ..+...+ +=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~ 89 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCE 89 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHH
Confidence 3355677888999999999999999876 667788888888999999999999665543321 1111111 234554
Q ss_pred -hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-chhHHHHHHHHHhcCCChHHH
Q 048258 92 -NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 92 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 169 (504)
+.+..++|+..++-.. ..+..+...-...+.+.|++++|+.+|+.+.+.+... +...-..++.+-. ...+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 7899999999998322 1244466667788899999999999999997764431 2222112221110 0011
Q ss_pred HHHHHHHhhCCCCCChhhHHHH---HHHHHccCChhhHHHHHHHHHhcC-------CCc--c-----HHHHHHHHHHHHh
Q 048258 170 AAILRKMGDRGYLPESSTFDYT---VTCLVTGLDLNETCGILDTFIKRG-------VKP--R-----FSTYLLLMEALYK 232 (504)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~--~-----~~~~~~l~~~~~~ 232 (504)
++.+. ....| ..+|..+ .-.++..|++.+|+++++.....+ -.. + ...-..+...+..
T Consensus 162 -~~~q~---v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 -QLLQS---VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred -HHHHh---ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11222 22222 3344433 445667899999999998883321 000 1 1133456677788
Q ss_pred cCCcHHHHHHHHHHHhCCCC
Q 048258 233 AGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~ 252 (504)
.|+..+|..+|..+++..+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC
Confidence 89999999999888877644
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.8e-09 Score=90.16 Aligned_cols=306 Identities=9% Similarity=0.010 Sum_probs=219.2
Q ss_pred CCCChhhHHHHHHHHHc--cCChhhHHHHHHHHHhc-CCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHH
Q 048258 181 YLPESSTFDYTVTCLVT--GLDLNETCGILDTFIKR-GVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNS 257 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (504)
..|...+....+.+++. .++...+..++-.+... -++.+......+..++...|+..+|...|++..-.++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 34444455555554433 45555555555444443 35667788889999999999999999999998876544 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (504)
.....-.+.+.|+.+....+...+.... ..+...|-.-........++..|+.+-++.++.+. .+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 4444555667888888888888776552 11333344444445567788899988888887642 244445444566788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHH-ccCCHHHHH
Q 048258 338 AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI-QSFC-RMNKIEKAE 415 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~ 415 (504)
.+++++|.-.|+..+... +-+...|..|+.+|...|.+.+|..+-...... ++.+..+...+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 899999999999988763 457889999999999999999998877776654 344555655552 3332 333458899
Q ss_pred HHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 416 KAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 416 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+++++..+. .|+ ....+.+...|...|..+.++.++++.+. ..||......|+..+...+.+++|.+.|..+++.
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 998888874 565 34456677788899999999999999887 4789999999999999999999999999988876
Q ss_pred C
Q 048258 495 G 495 (504)
Q Consensus 495 ~ 495 (504)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 5
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=2.5e-09 Score=98.04 Aligned_cols=293 Identities=11% Similarity=0.084 Sum_probs=171.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA-- 93 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 93 (504)
....+...|++++|++.++.-.+. +.............+.+.|+.++|..+|..+...+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 445678889999999998775543 24445566777788889999999999999998885 33444455555544222
Q ss_pred ---CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 94 ---KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH-KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 94 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
...+....+|+++...- |.......+.-.+....++. .+...+...+..|.+ .+|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24667777888877652 44333333332222222222 233344444444432 4566666666655555444
Q ss_pred HHHHHHHhhC----C----------CCCCh--hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 048258 170 AAILRKMGDR----G----------YLPES--STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA 233 (504)
Q Consensus 170 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (504)
.+++...... + -.|+. .++..+...|...|++++|++.++..+++. +..+..|..-++.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555444321 1 11222 233455566667777777777777777653 22356666667777777
Q ss_pred CCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHhcCCc
Q 048258 234 GRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVT--------FNTLISGHCKDAE 305 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~ 305 (504)
|++.+|.+.++.+...+.. |...-+..+..+.+.|+.++|.+++......+..|-... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777666544 555555666667777777777777776665543221111 1223445666666
Q ss_pred hHHHHHHHHHHH
Q 048258 306 VHKTRELLVMLL 317 (504)
Q Consensus 306 ~~~a~~~~~~~~ 317 (504)
+..|+..|..+.
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=3.8e-11 Score=113.86 Aligned_cols=269 Identities=10% Similarity=0.019 Sum_probs=187.2
Q ss_pred CCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 048258 42 KPDRFTYNILIHGICR-----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN---------AKRVAEVFRVLEIMK 107 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 107 (504)
+.+...|...+++-.. .+.+++|+.+|++..+.. +.+...|..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666655322 234679999999998874 3345566666555442 244789999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhh
Q 048258 108 ERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESST 187 (504)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (504)
+.+. .+...+..+...+...|++++|...|++..+..|. +...+..+...+...|++++|...+++..+.... +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8753 36677888888888999999999999999988776 5567777888899999999999999998876433 2223
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048258 188 FDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK 267 (504)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (504)
+...+..+...|++++|+..+++......+.++..+..+..++...|+.++|...+.++....+. +....+.+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 33344456668899999999998877643335556777888888999999999999887665433 45556666667777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC
Q 048258 268 VNMMDRATEICREMRDRD-IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG 320 (504)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 320 (504)
.| +.|...++.+.+.. ..+....+ .-..+.-.|+.+.+..+ .++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766542 12222222 33334555666666655 7776653
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=6.8e-10 Score=101.24 Aligned_cols=431 Identities=14% Similarity=0.072 Sum_probs=276.9
Q ss_pred HHHhcCCHHHHHHHHH----HhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 19 ALVKSNSIDLAYLKFQ----QMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.++-..+.+++....- ++....+..+...|..+.-++...|+++.+.+.|++....- --....|..+...|...|
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG 371 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc
Confidence 3344455555554332 22223345688888888888889999999999999877542 235567888888888888
Q ss_pred ChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHH-hcCChHHHHHHHHHHHhcC----CCcchhHHHHHHHHHhcC-----
Q 048258 95 RVAEVFRVLEIMKERNVCPN-EATVRSLVHGVF-RCLDPHKAFELLIRFMERE----PLTQKLVCNTLLYRLSNN----- 163 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~----- 163 (504)
.-..|..+++.-......|+ ...+......|. +.+..++++.+..++.... .......+..+.-+|...
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 88888888887765532243 334444444444 4466777777766666521 112233343343333321
Q ss_pred ------CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 164 ------SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 164 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
....++++.+++..+.+.. |+.....+.--|+..++++.|.+..++..+.+...+...+..++-.+...+++.
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 1235677777777665433 444444455567778889999999999888866778888888888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------C-------CCCC
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR---------------------D-------IAPN 289 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~ 289 (504)
+|+.+.+..+..-.. |......-+..-...++.++++.....+... | ..-.
T Consensus 531 ~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 531 EALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 999988888765322 2222222222333356666666555444321 0 0001
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHCCC--Ccc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 048258 290 LVTFNTLISGHCKDAEVHKTRELLVMLLECGF--KPD------KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI 361 (504)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (504)
..++..+.......+....-... +..... .|+ ...|......+.+.+..++|...+.+..+. .+....
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~ 685 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSAS 685 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHH
Confidence 11111111111100000000000 111001 122 123445566677888899999888888776 355777
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCcccHHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEK--AFFSMLTLGLRPDNFSYSALIK 438 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~ 438 (504)
.|......+...|..++|.+.|...... .|+ +....++..++...|+..-|.. ++..+.+.+ +.+...|..+..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~ 762 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGE 762 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 8888888889999999999999998875 454 5588899999999998877777 999999976 457889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 048258 439 ALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~ 459 (504)
.+-+.|+.++|.+.|....+.
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHccchHHHHHHHHHHHhh
Confidence 999999999999999998864
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=2.3e-11 Score=103.20 Aligned_cols=202 Identities=9% Similarity=-0.029 Sum_probs=137.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.+. .+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 345566667777777777777777777776653 33456666777777777777777777777776532 3445666667
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL-TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL 201 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (504)
..+...|++++|.+.+++....... .....+..+...+...|++++|.+.+.+....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 7777777777777777777654321 23345555667777778888888888777664322 445666777777788888
Q ss_pred hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 202 NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
++|...+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877766 344556666677777788888888877766654
No 70
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.7e-10 Score=106.62 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=176.1
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 048258 31 LKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-+..+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667778899999999999999999999999998 9999988887888889999999888888877766
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHH----HHhc----CCC-cchhHH-------------HHHHHHHhcCCChHH
Q 048258 111 VCPNEATVRSLVHGVFRCLDPHKAFELLIR----FMER----EPL-TQKLVC-------------NTLLYRLSNNSMASE 168 (504)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~----~~~-~~~~~~-------------~~l~~~~~~~~~~~~ 168 (504)
.|.+.+|..|..+|...||... ++..++ +... |.. +....+ ...+......|.++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5788899999999999999765 333222 2211 111 001111 112233344555666
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 169 AAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
+++++..+...... .++..+++-+... .....++........-.|++.++..++.+-...|+.+.|..++..|.+
T Consensus 158 llkll~~~Pvsa~~---~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN---APFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCccccc---chHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66666555432211 1111123333322 222333333333322258889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 249 DRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
.|++.+..-|-.++-. .++...+..+++-|.+.|+.|+..|+...+..+.++|
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9988777766666544 7888888999999999999999999887776666644
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-08 Score=85.53 Aligned_cols=295 Identities=11% Similarity=0.016 Sum_probs=217.2
Q ss_pred HhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH
Q 048258 160 LSNNSMASEAAAILRKMGDRG-YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE 238 (504)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 238 (504)
.+-.++...+...+-.+.... ++-|++....+..++...|+.++|+..|++....+ +-...........+...|+.+.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555555555544443332 44577788899999999999999999999887753 2234445555566778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHH
Q 048258 239 GDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLE 318 (504)
Q Consensus 239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (504)
...+...++..... ....|-.-+.......+++.|+.+-++..+.+.. +...+-.-...+...+++++|.-.|.....
T Consensus 285 ~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 88888777754322 3334444445555678899999999888776433 445555556678889999999999988876
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-H
Q 048258 319 CGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILI-RSLC-AIGDVARSLRLFQKMQADRISPD-I 395 (504)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~ 395 (504)
.. +.+..+|.-|+.+|...|.+.+|...-+...+. ++.+..+...+. ..+. ...--++|.++++..... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 53 347889999999999999999999888877765 455677776663 3332 233457899999888774 565 3
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
...+.+...+...|..+++..++++.... .||....+.|.+.+...+.+++|...|..++.. .|..
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 47778888899999999999999998874 788888899999999999999999999999874 4543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=1e-10 Score=111.02 Aligned_cols=250 Identities=13% Similarity=0.039 Sum_probs=172.6
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK---------VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
..++|...++++.+..+. +...|..+..++.. .+++++|...+++..+.++. +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 357888889988887655 55666666554442 24478999999998887543 67778888888888999
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK 385 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 385 (504)
+++|...+++..+.+ +.+...+..+..++...|++++|+..++++.+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999988875 335667778888889999999999999999886422 333333445556668899999999998
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCC
Q 048258 386 MQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN-FSYSALIKALIKSGRFDEAKQTFLSMEQNG-CNP 463 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 463 (504)
+.+...+.+...+..+..++...|++++|...+.++... .|+. ...+.+...|...| ++|...++.+.+.. -.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 876532224445677778888899999999999887654 3443 33445555666666 47777777766431 122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
....+ ....+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222 33344455666666655 7776654
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=1.4e-11 Score=100.41 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=117.9
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKV 268 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (504)
+.+.++|.+.|-+.+|.+.++..++. .|-+.+|..+..+|.+..++..|+.++.+.++.-+. ++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 34555555556666665555555543 344455555555555555555555555555544322 333333444555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 269 NMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCL 348 (504)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (504)
++.++|.++++...+.. +.+......+...|.-.++++-|...|.++.+.|.. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555555443 224444444444555555555555555555555543 5555555555555555555555555
Q ss_pred HHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 349 SEMVEWGVPPNT--ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 349 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
++....--.|+. ..|..+.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555543222222 234445555555555555555555554442 22344555555555555555555555555544
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=7.4e-11 Score=100.03 Aligned_cols=198 Identities=16% Similarity=0.163 Sum_probs=113.3
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554432 1234445555555566666666666666655542 224445555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 048258 372 AIGDVARSLRLFQKMQADRI-SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
..|++++|.+.++++..... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654321 1123345555666667777777777777766642 223445666666677777777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 451 QTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
..+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777776654 233445555566666677777777777666554
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.6e-09 Score=99.26 Aligned_cols=290 Identities=18% Similarity=0.212 Sum_probs=157.4
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 048258 194 CLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKV----- 268 (504)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 268 (504)
.+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.++. +..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 334455555555555443332 2333344455555566666666666666666655543 444444444443211
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch-HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 269 NMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV-HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDC 347 (504)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (504)
.+.+...++++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|.......-...+
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23555566666665442 2222222222222221222 2333344445555543 2344444444444444444444
Q ss_pred HHHHHHC--------------CCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCC
Q 048258 348 LSEMVEW--------------GVPPNTI--TYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNK 410 (504)
Q Consensus 348 ~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 410 (504)
+...... .-+|+.. ++..+...|...|++++|++++++.+++ .|+ +..|..-.+.+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 4443321 0123332 3355566677788888888888887776 444 5577777777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh------hH--HHHHHHHHhcCCHH
Q 048258 411 IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY------TS--NLILETLVQQGRFE 482 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~ 482 (504)
+.+|.+.++.+.... .-|...-+..+..+.+.|++++|.+++......+..|-.. .| ...+.+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 888888888777754 2344445556666777888888888887777655434221 12 33467777888888
Q ss_pred HHHHHHHHHHH
Q 048258 483 EAHDIVKTSKE 493 (504)
Q Consensus 483 ~a~~~~~~~~~ 493 (504)
.|.+.+....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88777766654
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.2e-08 Score=87.17 Aligned_cols=421 Identities=10% Similarity=0.084 Sum_probs=246.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
-+=++.+..+|++++|.+...++...+ +.|...+..=+-++.+.+++++|+.+.+.-... ..+..-+..-+-+..+.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 334667788899999999999999876 445566666666788999999999666554321 11111112334455688
Q ss_pred CChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHH
Q 048258 129 LDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGI 207 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 207 (504)
+..++|+..++-.... +..+...-...+.+.+++++|+++|+.+.+.+..- +...-..++..-.. ..+. +
T Consensus 93 nk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-L 163 (652)
T ss_pred ccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-H
Confidence 9999999988832221 33355555677889999999999999997764331 11111222211111 1111 1
Q ss_pred HHHHHhcCCCc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCH
Q 048258 208 LDTFIKRGVKP--RFSTYLLLMEALYKAGRDVEGDRYLNHVFKD-------RLVSNVN-------SYNMVIDCFCKVNMM 271 (504)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~~~~ 271 (504)
+......| +...+......+...|++.+|+++++...+. +-..+.. .-..+.-.+...|+-
T Consensus 164 ---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 164 ---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred ---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12222222 3455666677788999999999999988321 1110111 122344566788999
Q ss_pred HHHHHHHHHHHhCCCCCChhh----HHHHHHHHhcCCchHH--------------HHHHHHHH-----------------
Q 048258 272 DRATEICREMRDRDIAPNLVT----FNTLISGHCKDAEVHK--------------TRELLVML----------------- 316 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~--------------a~~~~~~~----------------- 316 (504)
++|..++......... |... -|.++. +....++.. +..+...+
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887533 3211 122211 111111000 00000000
Q ss_pred ------------HHC-CCCccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 317 ------------LEC-GFKPDKFTFNSMIDCLC--RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLR 381 (504)
Q Consensus 317 ------------~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 381 (504)
... +..| ...+..++..+. +...+..+..++...-+........+.-..+......|+++.|.+
T Consensus 319 ~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 000 0111 223333433322 222466777777777665333234455666777788999999999
Q ss_pred HHH--------HHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCcc----cHHHHHHHHHhcCChh
Q 048258 382 LFQ--------KMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL--GLRPDNF----SYSALIKALIKSGRFD 447 (504)
Q Consensus 382 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~ 447 (504)
++. .+.+.+.. +.+..++...+.+.++.+.|..++.+.+.. .-.+... ++.-++..-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 998 44444333 345556666777777777777777666542 0012222 2333334445679999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 448 EAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 448 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
+|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999863 66888888888888875 466776665543
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=3.1e-09 Score=86.01 Aligned_cols=363 Identities=14% Similarity=0.108 Sum_probs=231.9
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 048258 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (504)
|.-.|+.-...-+++++..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|-+.++++... .|..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHH
Confidence 4445666666668888989999999999999998887774 447888899999999999999999999999876 4554
Q ss_pred HhHHH-HHHHHHhcCChhhHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHH
Q 048258 81 YTYTI-LIDGFCNAKRVAEVFRVLEIMKERNVCPNE--ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLL 157 (504)
Q Consensus 81 ~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (504)
.-|.. -.+.+-+.+.+..|+.+...|... ++. .+...-.....+.+|+..+..++++....+ +..+.+...
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 44432 245566889999999999888753 121 122222233446788888888888765432 444555555
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHH----HHHHHHHhc
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYL----LLMEALYKA 233 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 233 (504)
....+.|++++|.+-|+...+-+--.....|+..+ +..+.++++.|++...+++++|++..+..-. ..+++- ..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-sv 229 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SV 229 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cc
Confidence 56678999999999999987754433455565554 4456789999999999999988653322110 000000 00
Q ss_pred CCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCchHHHHHH
Q 048258 234 GRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD-IAPNLVTFNTLISGHCKDAEVHKTREL 312 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (504)
|+. ... ..++ -+..+|.-...+.+.++++.|.+.+-+|..+. ...|+.|...+.-. -..+++....+-
T Consensus 230 gNt---~~l----h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~K 298 (459)
T KOG4340|consen 230 GNT---LVL----HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEK 298 (459)
T ss_pred cch---HHH----HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHH
Confidence 000 000 0000 12344555556678899999999888886553 34466776655422 223455556666
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 048258 313 LVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPNTITYNILIRSLC-AIGDVARSLRLFQKMQ 387 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 387 (504)
+.-+.+..+ -...||..++-.|++..-++-|-+++.+-..... -.+...|+ ++.++. ..-..++|.+-+..+.
T Consensus 299 LqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 299 LQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 666666544 3467888888889999888888888765432211 11233333 333333 3345666666555543
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=4e-09 Score=85.34 Aligned_cols=391 Identities=13% Similarity=0.059 Sum_probs=200.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+++..+.+..+++.|++++..-.+++. .+...+..+..+|....++..|-..|+++-...|.....-+. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHHhc
Confidence 333334444445555555444444421 133344444444555555555555555444433321111110 122334455
Q ss_pred ChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESS--TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 242 (504)
.+..|+++...|.+. |+.. ....-.......+|+..+..++++.... .+..+.....-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 555666665555442 1111 1111112233456666666666655432 2455555566666777888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------------Ch---------------hhHH
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-------------NL---------------VTFN 294 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~ 294 (504)
|+...+.+--.....|+..+. ..+.++++.|+++..++.++|++. |. ..+|
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 877776554435556665443 345677888888887777665421 11 1123
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 295 TLISGHCKDAEVHKTRELLVMLLE-CGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
.-...+.+.++.+.|.+.+-.|.. .....|++|...+.-. ...+++....+-++-+...+. -...||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 333345678888888888887752 2334577777665422 234556666666666666543 3456888888899998
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCh---
Q 048258 374 GDVARSLRLFQKMQADRI-SPDIYTFNALIQSFC-RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL--IKSGRF--- 446 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~--- 446 (504)
.-++.|-+++.+-..... -.+...|+.| .++. -.-..++|.+-+..+...- ....-...+..- ...++-
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHH
Confidence 888888887765332211 1233334333 3333 3445666666555443310 000000111111 111111
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 447 DEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 447 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
..+++-+++..+. =..+...-.+.+.+..++..+++.|..-.+-
T Consensus 400 R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 400 RKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1222222222221 1123334456677788899999998876654
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=1.3e-09 Score=98.65 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=112.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhc-----C--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC-----C-CCC-H
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKR-----G--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR-----L-VSN-V 255 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-~ 255 (504)
.+...|...+++.+|..+|+++... | .+--..++..|..+|.+.|++.+|..+++.+.+-- . .+. .
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3556667777777777777766543 1 11123456666777777777777776665554310 0 001 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
..++.+...+...+++++|..+++...+. +.......-..-..+++.|...|
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i----------------------------~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKI----------------------------YLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHH----------------------------HHhhccccchHHHHHHHHHHHHH
Confidence 12333344444445555555554432221 11000000001234666777777
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHhHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEW----GVP---PNTITYNILIRSLCAIGDVARSLRLFQKMQAD----RI-SPD-IYTFNALI 402 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~ 402 (504)
...|++++|.+++++++.. +.. -....++.+...|.+.+++++|.++|.+.... |. .|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 7777777777777766542 111 11234566777777777777777777664321 11 222 34777778
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 048258 403 QSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 403 ~~~~~~g~~~~a~~~~~~~~ 422 (504)
..|...|+++.|.++.+...
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 88888888888887776665
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.8e-09 Score=84.16 Aligned_cols=199 Identities=10% Similarity=-0.007 Sum_probs=135.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
+...|.-.|...|++..|..-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+++.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455666777777777777777777664 3355567777777777777777777777777653 235556677777777
Q ss_pred hcCChHHHHHHHHHHHhcCCC-cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHH
Q 048258 127 RCLDPHKAFELLIRFMEREPL-TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETC 205 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (504)
..|++++|.+.|++.+....- ....+|..+..+..+.|+.+.|...|++.++.... ...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 777777777777776654221 23456666777777777777777777777665322 3455666777777788888888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 206 GILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
..++.....+. ++..++...++.--..|+...+-++=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88887777764 77777777777777778877776665555544
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=4.2e-12 Score=76.56 Aligned_cols=49 Identities=53% Similarity=1.018 Sum_probs=28.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
||..+||.++++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-08 Score=89.69 Aligned_cols=413 Identities=13% Similarity=0.122 Sum_probs=212.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAKR 95 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 95 (504)
..+.+..|+++.|+..|-...... ++|-..|..-..+|...|++++|++=-.+..+. .|+ +..|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999998887 668888999999999999999998877777665 455 5679999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH---HHHHHHHhcCCC----cchhHHHHHHHHHhcC-----
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAF---ELLIRFMEREPL----TQKLVCNTLLYRLSNN----- 163 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~----~~~~~~~~l~~~~~~~----- 163 (504)
+++|+..|.+-++.. +.+...+..+..++.......+.+ .++..+.. .|. .....|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~-~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN-LPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc-ChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999988873 234455666666651110000000 00000000 000 0111122222111110
Q ss_pred -----CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc-CChh----hHHHHHHHHHh-cCCCccHHHHHHHHHHHHh
Q 048258 164 -----SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG-LDLN----ETCGILDTFIK-RGVKPRFSTYLLLMEALYK 232 (504)
Q Consensus 164 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 232 (504)
.+...+.-.+...... .+...-...... .... .......+..+ ...+.-..-...++.+..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~-------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDEL-------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cccccHHHHHHHHHHhcCccc-------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 0011111111000000 000000000000 0000 00000000000 0001112335567778888
Q ss_pred cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-------HHHHHhcCCc
Q 048258 233 AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT-------LISGHCKDAE 305 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~ 305 (504)
..++..+.+.+....... .+..-++....+|...|.+.++........+.|-. ...-|+. +..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 888889999888888766 36667777778888888888888777776665432 2222222 3335556677
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT-ITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
.+.++..|.+.......|+.. .+....+++........-.+ |.. .-...-...+.+.|++..|+..|.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 788888887765543333221 11222233333332222211 111 011111344445555555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 385 KMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
++++.. +.|...|..-.-+|.+.|.+..|+.--+..++. .|+ ...|..=..++....++++|.+.|++.++
T Consensus 383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555543 334455555555555555555555555555543 222 22233333333334455555555555555
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=4.2e-09 Score=82.16 Aligned_cols=196 Identities=15% Similarity=0.046 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
...|.-.|.+.|++..|.+-+++..+.+. .+..++..+...|-+.|+.+.|.+.|++.+...|. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 34444455555666666666666555531 13335555555555556666666555555555444 44455555555555
Q ss_pred CCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 163 NSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 163 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
.|++++|...|++......-| -..+|..+.-+..+.|+.+.|.+.+++.++.. +....+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 555555555555554432211 22344444444555555555555555544442 2223334444444444455544444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
.++.....+. ++..+.-..|+.--+.|+-+.+-++=.++.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444333 344444444444444444444444444433
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=7.8e-09 Score=89.79 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHhhhCC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 24 NSIDLAYLKFQQMSVDQ-CKP--DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
+..+.++..+.++.... ..| ....|..+...+...|++++|+..|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 111 13345566666677777777777777776654 335667777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCC
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (504)
..|++..+.+. .+..++..+..++...|++++|.+.+++.....|.... ...........++.++|.+.|.+.....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY--RALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 77777766532 23445666666666777777777777777766554221 1111122334556677777775543221
Q ss_pred CCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc---CC---CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC
Q 048258 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR---GV---KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (504)
.|+. +.. .......|+...+ +.++.+.+. .. +.....|..+...+.+.|++++|...|+++....+
T Consensus 196 -~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 -DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1221 111 1122223444332 233333221 00 11223555566666666666666666666665543
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=2.5e-09 Score=96.76 Aligned_cols=235 Identities=14% Similarity=0.049 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHhc-----CC--C
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKER-----N-VCPNEAT-VRSLVHGVFRCLDPHKAFELLIRFMER-----EP--L 147 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 147 (504)
+...+...|...|+++.|..+++...+. | ..|...+ ...+...|...+++++|..+|+++... |. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444566666666666666666665543 1 1122222 223555666666666666666665542 11 1
Q ss_pred cchhHHHHHHHHHhcCCChHHHHHHHHHHhhC-----C-CCCCh-hhHHHHHHHHHccCChhhHHHHHHHHHhcC---CC
Q 048258 148 TQKLVCNTLLYRLSNNSMASEAAAILRKMGDR-----G-YLPES-STFDYTVTCLVTGLDLNETCGILDTFIKRG---VK 217 (504)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~ 217 (504)
.-..+++.|...|.+.|++++|...+++..+. + ..|.. ..++.+...+...+++++|..+++...+.- +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22345666666677777777766666554321 1 11222 234556667777788888888777554420 11
Q ss_pred c----cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 048258 218 P----RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR----L---VSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-- 284 (504)
Q Consensus 218 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 284 (504)
+ -..++..+...|...|++.+|.+.++.++... . .-....++.+...|.+.+++.+|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 12345555555555555555555555554321 0 111223444555555555555555555433211
Q ss_pred --CC--CCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 048258 285 --DI--APNLVTFNTLISGHCKDAEVHKTRELLVML 316 (504)
Q Consensus 285 --~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (504)
|+ +....+|..|...|.+.|+++.|.++.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 11 111234444444444444444444444433
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=9e-12 Score=75.11 Aligned_cols=50 Identities=38% Similarity=0.730 Sum_probs=48.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR 57 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (504)
||..+||++|.+|++.|++++|.++|++|.+.|++||..+|+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=7.5e-09 Score=89.87 Aligned_cols=197 Identities=16% Similarity=0.066 Sum_probs=144.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|..+...+.+.|+++.|...|++..+.. +.+...|+.+...+...|++++|+..|++..+.. +.+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4557788888999999999999999999886 6678999999999999999999999999999874 3356788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|.+.|+...+.+ |+..............+++++|.+.+.+....... +...+ .+. ....|+..++
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~-~~~~~-~~~--~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK-EQWGW-NIV--EFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc-cccHH-HHH--HHHccCCCHH
Confidence 999999999999999999874 44332222222344578899999999776544322 22222 222 2234444433
Q ss_pred HHHHHHHh---hCCCC---CChhhHHHHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 170 AAILRKMG---DRGYL---PESSTFDYTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 170 ~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
+.+..+. +.... .....|..+...+...|++++|+..|++....+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 21111 123578889999999999999999999999875
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8e-07 Score=84.26 Aligned_cols=144 Identities=14% Similarity=0.227 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQ 403 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (504)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+++..+.+..-.|... ..|+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3456667777777777777776655443 266678888888888888888888887777664444443 46777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 483 (504)
+|++.++..+.++++ ..||......+.+-|...|.++.|.-+|.... .|..+...+...|+++.
T Consensus 1175 AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHH
Confidence 788888877766653 25677777777777888887777776665433 35666677777777777
Q ss_pred HHHHHHHH
Q 048258 484 AHDIVKTS 491 (504)
Q Consensus 484 a~~~~~~~ 491 (504)
|.+..+++
T Consensus 1239 AVD~aRKA 1246 (1666)
T KOG0985|consen 1239 AVDAARKA 1246 (1666)
T ss_pred HHHHhhhc
Confidence 76655443
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=2.5e-07 Score=76.80 Aligned_cols=317 Identities=11% Similarity=0.027 Sum_probs=193.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-HHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT-VRSLV 122 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~ 122 (504)
++.--.-+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+...|+.=+++..+. +||-.. -..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44444556677777888888888888877642 112223333345567778888888888877765 566442 22334
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
..+.+.|.++.|..-|+.+++..+... ...++..-+..+.+ .......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~---------------~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNG---------------LVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcc---------------hhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchh
Confidence 566788888888888888887765421 11111111111110 111233445556667777
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
.+++.+..+++.. +-|...+..-..+|...|++..|+.-++.+.+.... +...+..+...+...|+.+.++...++..
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7777777777753 456666777777777777777777777666655433 45555556666677777777777777766
Q ss_pred hCCCCCChhhH----HH---H------HHHHhcCCchHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCHHHHHH
Q 048258 283 DRDIAPNLVTF----NT---L------ISGHCKDAEVHKTRELLVMLLECGFKPDKF---TFNSMIDCLCRAHRFEDALD 346 (504)
Q Consensus 283 ~~~~~~~~~~~----~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~ 346 (504)
+.+ ||...+ .. + +......++|.++.+..+...+........ .+..+-.++...+++.+|++
T Consensus 251 Kld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 552 332211 11 1 112334566777777777776654332222 33444556667778888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 347 CLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
...+..+.. +.|..++.--..+|.-...++.|+.-|+.+.+.
T Consensus 329 qC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888887752 334777777777888777888888888888775
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6.1e-07 Score=83.21 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 445 RFDEAKQTFLSMEQNGCNPD----SYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+....++-...|.....-|| ..+|..++..+....+|+.|-+.++.|..+-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 44555555556665433332 3467788899999999999999999988763
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=2.5e-07 Score=83.81 Aligned_cols=93 Identities=10% Similarity=-0.048 Sum_probs=55.5
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHH
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-SN--VNSYNMVIDCFC 266 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~ 266 (504)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.....+. ++ ...|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44455566666666666666666653 334455666666666777777777776666654322 11 123445566666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 048258 267 KVNMMDRATEICREMRD 283 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~ 283 (504)
..|++++|..++++...
T Consensus 198 ~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 198 ERGDYEAALAIYDTHIA 214 (355)
T ss_pred HCCCHHHHHHHHHHHhc
Confidence 77777777777776643
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.8e-07 Score=84.65 Aligned_cols=199 Identities=16% Similarity=0.033 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQC-KPDR-FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..|..+...+...|+.+.+...+....+... .++. .........+...|++++|...+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455566677777888887777777655431 1222 222223344567889999999999887763 334444442 22
Q ss_pred HHH----hcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 89 GFC----NAKRVAEVFRVLEIMKERNVCPN-EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 89 ~~~----~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
.+. ..+....+.+.++.. ....|+ ......+...+...|++++|.+.+++..+..|. +...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 222 234445555555441 111223 334445666778888999999999888887765 456677778888888
Q ss_pred CChHHHHHHHHHHhhCCCC-CCh--hhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 164 SMASEAAAILRKMGDRGYL-PES--STFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
|++++|...+++....... |+. ..+..+...+...|++++|...++.....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 8888888888887654321 222 23445667777788888888888776543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.7e-07 Score=82.59 Aligned_cols=406 Identities=12% Similarity=0.056 Sum_probs=243.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDP 131 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 131 (504)
.+.+..|+++.|+..|.+..... ++|...|..-..+|+..|++++|++=-.+..+. .|+. ..|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45567899999999999999886 558888999999999999999998877776665 3443 4788889999999999
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHH-HHHHHHhhCCCCCChhhHHHHH-----HHHHccCChhhHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAA-AILRKMGDRGYLPESSTFDYTV-----TCLVTGLDLNETC 205 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~ 205 (504)
++|+..|.+-++..+. +...++-+..++. .+.+. +.|. ++..+..+. ..+.....+...+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 9999999998888766 6666666666651 11111 1110 111111111 1111111111111
Q ss_pred HHHHHHHhc-CCCc-cHHHHHHHHHHHHhcCCcHHHHHH-HHHH-HhCCCCC----------------------CHHHHH
Q 048258 206 GILDTFIKR-GVKP-RFSTYLLLMEALYKAGRDVEGDRY-LNHV-FKDRLVS----------------------NVNSYN 259 (504)
Q Consensus 206 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~-~~~~~~~----------------------~~~~~~ 259 (504)
+.++.-... +... ++. ++.+.......+.-... -..+ ...+..| -..-..
T Consensus 153 ~~~~~~p~~l~~~l~d~r----~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPR----LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHhhcCcHhhhcccccHH----HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 111100000 0000 111 11111100000000000 0000 0000000 011234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHH-------H
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSM-------I 332 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~ 332 (504)
.+.++..+..+++.|++-+....+.. .+..-++....+|...|.+..+...-+...+.|.. ...-|+.+ .
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 56666667778888888887777664 25555666677778888777777766666555432 22223333 3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHccCCH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI-YTFNALIQSFCRMNKI 411 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 411 (504)
.+|.+.++++.++..|++.......|+. ..+....+++....+...-. .|.. .-...-...+.+.|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 3455567778888888876654333221 12223344444444443332 2322 1222235667889999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..|...|.+++... +-|...|....-+|.+.|.+..|+.-.+...+.. ++....|..-+.++....+|+.|.+.|+..
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 4567889999999999999999999999988862 334567777788888889999999999998
Q ss_pred HHcC
Q 048258 492 KERG 495 (504)
Q Consensus 492 ~~~~ 495 (504)
++.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 8865
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.22 E-value=5.3e-07 Score=85.33 Aligned_cols=465 Identities=10% Similarity=-0.004 Sum_probs=279.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
+..|.+. +...|+..|-+..+.+ +.-...|..|...|+..-+..+|.+.|+...+.+ ..+...+......|++..++
T Consensus 466 a~~~~rK-~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMRK-NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhhh-hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 3344433 3777788777777665 3345678999999998889999999999999886 45788899999999999999
Q ss_pred hhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+.|..+.-..-+... ..-...|....-.|...++...|..-|+......|. +...|..+..+|.+.|++..|+++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 999998444333211 011122334555677889999999999999988776 788999999999999999999999988
Q ss_pred HhhCCCCCChhhHHHH--HHHHHccCChhhHHHHHHHHHhc------CCCccHHHHHHHHHHHHhcCCcHHH-------H
Q 048258 176 MGDRGYLPESSTFDYT--VTCLVTGLDLNETCGILDTFIKR------GVKPRFSTYLLLMEALYKAGRDVEG-------D 240 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a-------~ 240 (504)
.... +|+ .+|... ...-+..|.+.+++..+..+... +...-..++......+...|-...+ +
T Consensus 622 As~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 622 ASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred hHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 7654 333 233322 23445679999999988877653 1122233444444444433433333 3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHH-HHHHhCCC--------------------CCChhhH
Q 048258 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD------RATEIC-REMRDRDI--------------------APNLVTF 293 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~~~~~~~--------------------~~~~~~~ 293 (504)
+.|.-........+...|-.+-.++.-.-..+ ....++ .+....+. ..+..+|
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 33333333322223333322222211100000 001111 11111111 1123344
Q ss_pred HHHHHHHhc-------CC-chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 048258 294 NTLISGHCK-------DA-EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNI 365 (504)
Q Consensus 294 ~~l~~~~~~-------~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (504)
..++..|.+ .+ +...|...+....+... .+..+|+.|.- ....|.+.-|...|-+-.... +.+..+|..
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~N 855 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLN 855 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheec
Confidence 444433332 12 22356666666655421 24555555543 355677777777777666542 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHH
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT----LGLRPDNFSYSALIKALI 441 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 441 (504)
+...+.+..+++-|...|....... +.+...|..........|+.-++..+|..-.+ .|--|...-|-.....-.
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 8888888899999999998888753 34555666665556677888888888766222 222333333333333344
Q ss_pred hcCChhHHHHHHHHHHh---------cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 442 KSGRFDEAKQTFLSMEQ---------NGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
..|+.++-+...+++.. .+.+.+...|...+..+.+.+.+.+|.+...++.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55665554443333321 1234455677777777778888888877777654
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=9.3e-07 Score=90.82 Aligned_cols=336 Identities=14% Similarity=0.080 Sum_probs=212.5
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCC------Ccc--HHHHHHHHHHH
Q 048258 159 RLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGV------KPR--FSTYLLLMEAL 230 (504)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 230 (504)
.....|+.+.+...+..+.......+..........+...|+++++...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777766653221111223333444556678999999999887755311 111 12233344566
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHh
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNV----NSYNMVIDCFCKVNMMDRATEICREMRDRDI-----APNLVTFNTLISGHC 301 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 301 (504)
...|++++|...++.........+. ...+.+...+...|++++|...+.+...... .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988764222222 2345566677789999999999988764311 111234455667788
Q ss_pred cCCchHHHHHHHHHHHH----CCCC--c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--ChhhHHHHHHHH
Q 048258 302 KDAEVHKTRELLVMLLE----CGFK--P-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG--VPP--NTITYNILIRSL 370 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 370 (504)
..|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998887653 2211 1 22334455566777899999999998876531 111 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHH--hH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc----cHHHHHHHH
Q 048258 371 CAIGDVARSLRLFQKMQADR--ISPDIY--TF--NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF----SYSALIKAL 440 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~ 440 (504)
...|++++|...+.++.... ...... .. ...+..+...|+.+.|..++........ .... .+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHH
Confidence 88999999999998875421 111110 10 1122344568899999998877554211 1111 134566778
Q ss_pred HhcCChhHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 441 IKSGRFDEAKQTFLSMEQN----GCNPD-SYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999988753 22222 2356677888999999999999999988753
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.13 E-value=8.8e-07 Score=90.97 Aligned_cols=376 Identities=10% Similarity=-0.045 Sum_probs=215.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+...|++..|...+...... ..-..............|++..+..+++.+.......+..........+..
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 344455566667776666544443211 000011112223345567777777777665321111122222333444556
Q ss_pred cCChhhHHHHHHHHHHcCC------CCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcch----hHHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNV------CPNE--ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQK----LVCNTLLYRL 160 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 160 (504)
.|+++++...++.....-- .+.. .....+...+...|++++|...+++.....+..+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 7888888888887754310 0111 12222334556788999999988887764222221 2345556667
Q ss_pred hcCCChHHHHHHHHHHhhCCCC---C--ChhhHHHHHHHHHccCChhhHHHHHHHHHhc----CCC--c-cHHHHHHHHH
Q 048258 161 SNNSMASEAAAILRKMGDRGYL---P--ESSTFDYTVTCLVTGLDLNETCGILDTFIKR----GVK--P-RFSTYLLLME 228 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~ 228 (504)
...|++++|...+.+....... + .......+...+...|++++|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 7889999998888877542111 1 1234455566778889999998888776653 211 1 1233445566
Q ss_pred HHHhcCCcHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH-----HHHHH
Q 048258 229 ALYKAGRDVEGDRYLNHVFKDR----LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-NLVTF-----NTLIS 298 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~ 298 (504)
.+...|++++|...+....... .......+..+...+...|+++.|...+.......... ....+ ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6777899999988887765431 11123344445667778899999988887775421100 11111 11123
Q ss_pred HHhcCCchHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHH
Q 048258 299 GHCKDAEVHKTRELLVMLLECGFKPD---KFTFNSMIDCLCRAHRFEDALDCLSEMVEW----GVPP-NTITYNILIRSL 370 (504)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 370 (504)
.+...|+.+.|...+........... ...+..+..++...|++++|...+++.... +... ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34557888888888766543211111 111345566677888888988888877642 2221 123556667778
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 048258 371 CAIGDVARSLRLFQKMQADR 390 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~ 390 (504)
...|+.++|...+.+..+..
T Consensus 742 ~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 88899999998888887653
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=1.1e-08 Score=87.27 Aligned_cols=251 Identities=11% Similarity=0.069 Sum_probs=151.6
Q ss_pred HHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048258 193 TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (504)
+-+.-.|++..++.-.+ ........+......+.+++...|++..++. .+... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34445667776665554 2222222234455666777777787664432 23222 2555666655555554445555
Q ss_pred HHHHHHHHHHhCCCC-CChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 273 RATEICREMRDRDIA-PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
.++.-+++....... .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 565555544433322 22222333334566778888888777542 35666777788888888999999888888
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048258 352 VEWGVPPNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLR 427 (504)
Q Consensus 352 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 427 (504)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8753 23 334444444432 33688889999887665 46777888888888888899999998888887654 3
Q ss_pred CCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhc
Q 048258 428 PDNFSYSALIKALIKSGRF-DEAKQTFLSMEQN 459 (504)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 459 (504)
-++.++..++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3466666777777777777 5677777777764
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.12 E-value=1.3e-06 Score=82.73 Aligned_cols=180 Identities=8% Similarity=-0.033 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
.|+..+.+.++..-. +...|+.+.-. ...|++.-+.--|-+-.... +....+|..+.-.+.+..+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 455555555543322 44555554433 44455555555444433332 2245566666666777777888888887776
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV----EWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD---- 389 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 389 (504)
... +.+...|..........|+.-++..+|..-- ..|-.++..-|-.........|+.++-+...+++...
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 553 2244444444444445566666666665411 1222334444444444444455544433333322211
Q ss_pred -----CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 390 -----RISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 390 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
+.+.+...|.......-+.+.+..|.++..+.
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 22333445555555555555555555554443
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.12 E-value=4.6e-06 Score=73.85 Aligned_cols=432 Identities=9% Similarity=0.057 Sum_probs=249.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
.+-|..+|+.+++-+..+ ..++++.+++++...- +-.+..|..-+..-...++++....+|.+.... ..+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 456888999999988877 9999999999999664 567888999999999999999999999999876 456777887
Q ss_pred HHHHHHhc-CCh----hhHHHHHHHHHHc-CCCCCh-hhHHHHHHH---------HHhcCChHHHHHHHHHHHhcCCCcc
Q 048258 86 LIDGFCNA-KRV----AEVFRVLEIMKER-NVCPNE-ATVRSLVHG---------VFRCLDPHKAFELLIRFMEREPLTQ 149 (504)
Q Consensus 86 l~~~~~~~-g~~----~~a~~~~~~~~~~-~~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (504)
.++-..+. |+. +...+.|+-.... |+.+-. ..|+..+.. +....+.+...++|++++......-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 77643322 332 2334455555443 443322 345554433 2334456667778888776543322
Q ss_pred hhHHHHHH------HH-------HhcCCChHHHHHHHHHHhh--CCCC------CChhh---------HHHHHHHHHccC
Q 048258 150 KLVCNTLL------YR-------LSNNSMASEAAAILRKMGD--RGYL------PESST---------FDYTVTCLVTGL 199 (504)
Q Consensus 150 ~~~~~~l~------~~-------~~~~~~~~~a~~~~~~~~~--~~~~------~~~~~---------~~~l~~~~~~~~ 199 (504)
...|+... .. --+...+..|.++++++.. +|.. |...| |..+|.-= +.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 33333221 11 1123445667777666632 2211 11111 22222111 111
Q ss_pred Chh---------hHHHHHHHHHhc-CCCccHHHHHHH-------HHHHHhcCC-------cHHHHHHHHHHHhCCCCCCH
Q 048258 200 DLN---------ETCGILDTFIKR-GVKPRFSTYLLL-------MEALYKAGR-------DVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 200 ~~~---------~a~~~~~~~~~~-~~~~~~~~~~~l-------~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 255 (504)
-+. ...=.+++.... +..|+. |... .+.+...|+ .+++..+++.....-...+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~pei--Wy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEI--WYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 100 111112222211 222322 2111 112223333 34455555555544333333
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCc-cHHHHHHH
Q 048258 256 NSYNMVIDCFCKVN---MMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKP-DKFTFNSM 331 (504)
Q Consensus 256 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 331 (504)
..|..+...--..- ..+...+.++++......--.-+|...+..-.+..-+..|..+|.++.+.+..+ ++.+.+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 34443333221111 255566666666554322223466777777777777888888888888776655 66677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccC
Q 048258 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMN 409 (504)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 409 (504)
+.-++ .++..-|.++|+--.+. ...++.--...+..+...++-..+..+|++....+++|+ ..+|..++.--+.-|
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 77554 46778888888876664 334555556677777788888888888888887755554 458888888778888
Q ss_pred CHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCCh
Q 048258 410 KIEKAEKAFFSMLTLG---LRPDNFSYSALIKALIKSGRF 446 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 446 (504)
++..+.++-+++...- ..+....-..+++.|.-.+.+
T Consensus 487 dL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred cHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 8888888877665431 122222334455555555443
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=2.9e-06 Score=70.71 Aligned_cols=316 Identities=9% Similarity=0.067 Sum_probs=223.5
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHH
Q 048258 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS---LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCN 154 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (504)
.++.-..-+...+...|++..|+.-|....+- |+..|.+ -...|...|+...|+.-+.++++..|... ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~-~ARi 110 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM-AARI 110 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-HHHH
Confidence 45555666778888889999999999988865 3344444 45578889999999999999988765421 1112
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 048258 155 TLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAG 234 (504)
Q Consensus 155 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (504)
.-...+.+.|.+++|..-|+..+... |+..+ ..++.+-+..+. ........+..+...|
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~------e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQ------EHWVLVQQLKSASGSG 169 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCC
Confidence 22345778999999999999988763 22211 111111111111 1122334455667789
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLV 314 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (504)
+...|++....+++..+. +...+..-..+|...|.+..|+.=++...+..- .+..++.-+...+...|+.+.++....
T Consensus 170 D~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999999987755 888999999999999999999988887766532 356677777888889999999999999
Q ss_pred HHHHCCCCccHHHH----HHH---H------HHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHH
Q 048258 315 MLLECGFKPDKFTF----NSM---I------DCLCRAHRFEDALDCLSEMVEWGVPPNT---ITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 315 ~~~~~~~~~~~~~~----~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 378 (504)
+..+. .||.... -.+ . ......++|-+++...+...+....... ..+..+-.++...|++.+
T Consensus 248 ECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 88876 3554322 111 1 1234567788888888887776432122 234556667778899999
Q ss_pred HHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 379 SLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
|++...++... .|+ +.++..-..+|.-...++.|+.-|+.+.+.+
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 99999999875 454 7788888888998899999999999998753
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.10 E-value=6e-06 Score=73.19 Aligned_cols=427 Identities=10% Similarity=0.057 Sum_probs=234.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+-|..+|+.||+-+..+ ..+++++.++++... ++.....|..-|+.-....+++...++|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 77999999999987666 999999999999865 45577889999999999999999999999998763 355566655
Q ss_pred HHHHHhc-CChHH----HHHHHHHHHhc-CCCc-chhHHHHHHHH---------HhcCCChHHHHHHHHHHhhCCCCCCh
Q 048258 122 VHGVFRC-LDPHK----AFELLIRFMER-EPLT-QKLVCNTLLYR---------LSNNSMASEAAAILRKMGDRGYLPES 185 (504)
Q Consensus 122 ~~~~~~~-~~~~~----a~~~~~~~~~~-~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 185 (504)
+..-.+. |+... ..+.|+-.+.. +.++ .-..|+..+.. +..+.+.+...++++++....+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 5543332 33322 22333333322 2111 22334444332 22233445556666666543222111
Q ss_pred hhHHH------HHHHH-------HccCChhhHHHHHHHHHhc--CCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 186 STFDY------TVTCL-------VTGLDLNETCGILDTFIKR--GVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 186 ~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
..|+. -+... -+...+..|.++++++... |......+ .-..|-.++..++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv-------- 237 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQV-------- 237 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHH--------
Confidence 11111 11000 0111222233333332221 11100000 0000111111000
Q ss_pred CCCCHHHHHHHHHHHHhcC------C--HHHHHHHHHHHH-hCCCCCChhhH-----HHHHHHHhcCCc-------hHHH
Q 048258 251 LVSNVNSYNMVIDCFCKVN------M--MDRATEICREMR-DRDIAPNLVTF-----NTLISGHCKDAE-------VHKT 309 (504)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~------~--~~~a~~~~~~~~-~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a 309 (504)
..|-.+|..--.++ . -....-.+++.. -.+..|+..-. ....+.+...|+ .+++
T Consensus 238 -----~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 238 -----ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred -----HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 00111111100000 0 001111111111 11122211100 001112333333 4556
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRA---HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKM 386 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (504)
..+++.....-..-+..+|..+..---.. ...+.....++++...-...-..+|..++..-.+...++.|..+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666665432222333443333221111 235666777777765433333446888888888888999999999999
Q ss_pred HhCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-
Q 048258 387 QADRISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD- 464 (504)
Q Consensus 387 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 464 (504)
.+.+..+ ++.+.++++.-|| .++.+.|.++|+--++. +..++.--...++-+...|+-..|+.+|++....+++||
T Consensus 393 R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 9887666 6678888888766 67889999999876664 222334446778888889999999999999998866664
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 465 -SYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 465 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
..+|..++.--..-|+...+.++-+++...
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 468999999888899999999888877653
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=1.3e-08 Score=86.99 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=81.8
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----cC
Q 048258 228 EALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC----KD 303 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 303 (504)
..+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ +..+...+..++. ..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCc
Confidence 3444456666665544322 244555556666777777777777777766542 2233333333322 23
Q ss_pred CchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHH
Q 048258 304 AEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV-ARSLRL 382 (504)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~ 382 (504)
+.+.+|..+|+++... ..+++.+.+.+..++...|++++|..++.+....+ +.++.+...++.+....|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3566677777665543 34566666666666666777777777766666543 33555555566666666655 455566
Q ss_pred HHHHHh
Q 048258 383 FQKMQA 388 (504)
Q Consensus 383 ~~~~~~ 388 (504)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 666554
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.8e-08 Score=85.78 Aligned_cols=255 Identities=14% Similarity=0.069 Sum_probs=180.4
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
...-+.+.|+..+|.-.|+..++.+|. +...|..|.......++-..|+..+++..+.++. +....-.|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 345566788888888888888888766 7788888888888888888888888888877543 66777777778888888
Q ss_pred hHHHHHHHHHHHHCCCCc--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCChhhHHHHHHHHHhcCCH
Q 048258 306 VHKTRELLVMLLECGFKP--------DKFTFNSMIDCLCRAHRFEDALDCLSEMV-EWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
-..|...++.-+...++- +...-.. +.+.....+....++|-++. ..+..+|+.....|...|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 888888888776543210 0000000 11111222334445554444 344447788888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
++|++.|+.++... +.|..+||-|...++...+.++|+..|+++++. +|+ +...-.|.-.|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998863 445669999999999999999999999999984 676 44555677788999999999988876
Q ss_pred HHhc---C------CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 456 MEQN---G------CNPDSYTSNLILETLVQQGRFEEAHDI 487 (504)
Q Consensus 456 ~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 487 (504)
++.. + ..++..+|..|-.++...++.+-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6531 1 112345777777777777777644443
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=3.8e-08 Score=87.32 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=125.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChh
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVA 97 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 97 (504)
.-+.+.|+..+|.-.|+..++.+ |-+..+|..|......+++-..|+..+++..+.. +.|......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44567777777777777777665 5577777777777777777777777777777764 335666666666677777777
Q ss_pred hHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CcchhHHHHHHHHHhcCCChHH
Q 048258 98 EVFRVLEIMKERNVCP--------NEATVRSLVHGVFRCLDPHKAFELLIRFMEREP-LTQKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 168 (504)
+|.+.++.-....++- +...-.. ..+.....+....++|-++....+ ..+..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 7777776665432110 0000000 000111112223333433333332 2455555555555666666666
Q ss_pred HHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 169 AAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR-FSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 169 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
|.+.|+..+.. .| |...||.+...++...+.++|+..|.++++. .|. +.+...+.-+|...|.+++|...|-.+
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 66666665543 22 3445566666666666666666666666554 232 344455555566666666666555544
Q ss_pred H
Q 048258 247 F 247 (504)
Q Consensus 247 ~ 247 (504)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.5e-05 Score=76.02 Aligned_cols=322 Identities=12% Similarity=0.126 Sum_probs=160.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (504)
.|+...+..+.++...+-+.+.+++++++.-.. +..+...-|.|+-...+. +..+..+..+++-.-+. ..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hh
Confidence 456666666777777777777777777765321 122233334444333332 33444444444433211 12
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD 200 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (504)
+.......+-+++|+++|++.-. +....+.++. .-+..+.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 33444555666666666665422 2233333332 2344455554444332 34556666666666666
Q ss_pred hhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 201 LNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICRE 280 (504)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (504)
..+|++-|-+ ..|+..|..+++...+.|.+++-.+++..+.+....|... ..++-+|++.++..+..+++.
T Consensus 1120 v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 6666655432 2245566666666666666666666665555544333322 345556666666555444331
Q ss_pred HHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 048258 281 MRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT 360 (504)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (504)
-|+......+.+-|...+.++.|.-+|.. ...|..+...+...|++..|.+.-++. .+.
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 23555555555556666666665555542 233555555555556655555443332 134
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
.+|-.+-.+|...+.+.-| +|...++-....-...++..|...|-+++...+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 4555555555444433222 2222222223333444555555555555555554443
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=7.6e-06 Score=76.25 Aligned_cols=393 Identities=14% Similarity=0.059 Sum_probs=180.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCc-HHhHHHHHHH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG---------YAPN-VYTYTILIDG 89 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~-~~~~~~l~~~ 89 (504)
|...|+.+.|.+-.+.++ +..+|..+.+.|.+..+.+-|.-.+-.|.... -.++ ...-.++ .
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv--L 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV--L 809 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH--H
Confidence 445566666666655554 34556666666666655555544444332210 0111 1111111 1
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
....|..++|+.+|.+-++. ..|=..|-..|.+++|+++-+.--.. .-..+|......+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 23456666666666665543 12233444556666666554432111 1123344444444445556666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 170 AAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+++|++.... -...+..+. .+......+.+. ..|...|.-....+-..|+.+.|+.+|..+..
T Consensus 878 leyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 878 LEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 6666554221 111111110 001111111111 12334444455555556666666666654432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHH
Q 048258 250 RLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
|..+.+..+-.|+.++|-.+-++- | |......+.+.|-..|++.+|...|.+... |.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 344555555566666666655442 1 445566667777777777777776665432 11
Q ss_pred HHHHHH-------------H--hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------H
Q 048258 330 SMIDCL-------------C--RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQK--------M 386 (504)
Q Consensus 330 ~l~~~~-------------~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~ 386 (504)
..|+.| . ...+.-.|-++|++.- . .....+..|-+.|.+.+|+++--+ +
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 112211 1 1112222333333321 0 112233345566666655543221 1
Q ss_pred HhCCC--CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCC
Q 048258 387 QADRI--SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME-QNGCNP 463 (504)
Q Consensus 387 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~ 463 (504)
+..++ ..|+...+--...++...++++|..++-...+ |...+..|.. .+..-..++-+.|. .+.-.|
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN-RNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc-CCCchhHHHHHhcCcCcCCCc
Confidence 11112 23455566666666777777777777655544 2222333322 23333334444443 111122
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 464 DS----YTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 464 ~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
+. .++..++..|.++|.|..|-+-|.+
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 22 3455667777777777766555443
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=5.5e-07 Score=88.20 Aligned_cols=243 Identities=9% Similarity=0.070 Sum_probs=183.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC---hhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAPN---LVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
-|++.....|. +...|-..|......++.++|.++.++.... +++-. ...|.++++.-..-|.-+...++|+++.
T Consensus 1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34445555444 6677888889999999999999999888754 22111 2356666666666778888899999988
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD--- 394 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 394 (504)
+. .-....|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|..++.++.+. -|.
T Consensus 1525 qy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eH 1599 (1710)
T KOG1070|consen 1525 QY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEH 1599 (1710)
T ss_pred Hh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhh
Confidence 75 223567888999999999999999999999986 3457778999999999999999999999999875 333
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh--hHHHHH
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY--TSNLIL 472 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~ 472 (504)
.....-.+..-.+.|+.+.+..+|+..+... +.....|+.+++.-.++|+.+.++.+|++....++.|... .|..++
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 3345555666678999999999999988763 3456789999999999999999999999999988777432 455556
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 048258 473 ETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~ 491 (504)
..--..|+-+.++.+=.++
T Consensus 1679 eyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHhcCchhhHHHHHHHH
Confidence 5555567665544443333
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=4.8e-06 Score=76.61 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR 340 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 340 (504)
.+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34445556677777777777766532 23345666677777777777777765431 23445666777777
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
|+.|.++-.+... .......|..-..-+-+.|++.+|.+++-
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 7777766655432 22233344444444455566555555543
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.93 E-value=5.4e-05 Score=71.57 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 048258 364 NILIRSLCAIGDVA---RSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL 440 (504)
Q Consensus 364 ~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (504)
+.++..+.+.++.. +|+-+++...... +.|..+--.+++.|+-.|-+..|.++|..+.-..+..|..-|- +...+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 45566666666644 3444444444431 3334444566777777777777777777766554544433221 22334
Q ss_pred HhcCChhHHHHHHHHHH
Q 048258 441 IKSGRFDEAKQTFLSME 457 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~ 457 (504)
...|++..+...+....
T Consensus 518 ~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHL 534 (932)
T ss_pred HhcccchhHHHHHHHHH
Confidence 44556665555555444
No 110
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=3.5e-06 Score=73.20 Aligned_cols=213 Identities=6% Similarity=-0.064 Sum_probs=138.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
+..+-..+...+..++|+...+++++.+ +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.-...+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4445555666778899999999988775 556667776666666667 5789999999888775 446667776665666
Q ss_pred hcCCh--hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC---CC-
Q 048258 92 NAKRV--AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN---SM- 165 (504)
Q Consensus 92 ~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~- 165 (504)
+.|+. ++++..++.+.+.+. -+..+|.....++...|+++++++.++++++.++. +..+|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 66653 677888888887753 46778888888888888899999999998887765 556666555444433 22
Q ss_pred ---hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc----CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 048258 166 ---ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG----LDLNETCGILDTFIKRGVKPRFSTYLLLMEALY 231 (504)
Q Consensus 166 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (504)
.++.++...++...... +...|+.+...+... +...++.+.+....+.+ +.+...+..++..++
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 23455555555544322 555666555555542 23344555555554432 234444555555554
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=2.3e-06 Score=78.54 Aligned_cols=221 Identities=17% Similarity=0.199 Sum_probs=178.8
Q ss_pred CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 216 VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
.+|--..-..+...+.+.|-..+|..++++.. .|...+.+|...|+..+|..+..+..++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444556677788889999999999888654 4677888999999999999999888874 678889999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 048258 296 LISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD 375 (504)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (504)
+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 988888888888898888765432 11122222345789999999999887763 4467789889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 376 VARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
++.|.+.|...... .|+ ...||.+-.+|.+.++-.+|...+.++.+.+ .-+...|...+-...+.|.+++|++.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999998875 454 5699999999999999999999999999887 5567778888888899999999999999
Q ss_pred HHHh
Q 048258 455 SMEQ 458 (504)
Q Consensus 455 ~~~~ 458 (504)
++..
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 8874
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=4e-05 Score=70.84 Aligned_cols=292 Identities=12% Similarity=0.021 Sum_probs=133.3
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
.+.....++.+|+.+++.+.++.. ...-|..+...|+..|+++.|.++|.+. ..+...+..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344455556666666665554422 2233445555666666666666665432 22344455666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
+|.++-.... ++......|-.-..-+-..|++.+|.++|-.+.. |+ ..+..|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 6655544432 2333344444444455555666655555533221 11 23445555555555555554432
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD-------- 389 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------- 389 (504)
.. .-..|...+..-+...|+...|..-|-+..+ |...+..|-..+-|++|.++-+.--..
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 11 1122333444445555666666555544322 233344444444444444332211000
Q ss_pred ------CCCC------CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 390 ------RISP------DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 390 ------~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
|-.. .......-+...+..+.++-|.++-+-..+.. .| .....+...+-..|++++|-+.+-+.+
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~--~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MG--EVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cc--cchhHHhhhhhhccchhhhhHhhHHHh
Confidence 0000 00011122233344444555555444333321 11 222334444556777888877777776
Q ss_pred hcCCCCChhhHHH-----HHHHHHhcC-CHHHHHHHH
Q 048258 458 QNGCNPDSYTSNL-----ILETLVQQG-RFEEAHDIV 488 (504)
Q Consensus 458 ~~~~~~~~~~~~~-----l~~~~~~~g-~~~~a~~~~ 488 (504)
+.+ .-..+|.. .-.-+.+.| +.++|..+|
T Consensus 1023 kln--tynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1023 KLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred hcc--cccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 542 11222321 222344555 567776665
No 113
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=5.1e-06 Score=72.20 Aligned_cols=211 Identities=11% Similarity=0.006 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
.+-..+...++.++|+.+.+++.+.. +-+..+|+.-..++...| .+++++..++++.+.+. -+..+|......+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 33344455677888888888888764 334556666666666666 56888888888887643 2445566555555556
Q ss_pred CCh--HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc---CCh--
Q 048258 129 LDP--HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG---LDL-- 201 (504)
Q Consensus 129 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~-- 201 (504)
|+. ++++..++++++..+. +..+|+....++...|.++++++.+.++.+.+.. +...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 653 5667777777776664 6667777777777777788888888887776544 455555554444332 111
Q ss_pred --hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc----CCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 202 --NETCGILDTFIKRGVKPRFSTYLLLMEALYKA----GRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 202 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
++.++...+++... +-+...+..+...+... +...+|.+.+..+.+..+. +......++..|+
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 23444444444432 23344444444444331 2223344444444433222 3444444444444
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=5e-07 Score=76.30 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=98.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc-HHhHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR---FTYNILIHGICRIGVVDEALRLVKQMEGLGYA-PN-VYTYT 84 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~ 84 (504)
+..+......+...|+++.|...|+++.+.. +.++ .++..+..++...|++++|+..++++.+.... +. ..++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3345555566666666666666666665543 2222 34455556666666666666666666554211 01 01233
Q ss_pred HHHHHHHhc--------CChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHH
Q 048258 85 ILIDGFCNA--------KRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNT 155 (504)
Q Consensus 85 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
.+..++... |++++|.+.|+.+.... |+. .....+..... .... . ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 333333332 45566666666665542 222 11111110000 0000 0 001123
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhCCC-CC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 156 LLYRLSNNSMASEAAAILRKMGDRGY-LP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
+...+.+.|++.+|...+........ .| ....+..+..++...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667888888888888888776532 12 3457778888888888888888888877664
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.87 E-value=9.1e-05 Score=70.09 Aligned_cols=455 Identities=14% Similarity=0.148 Sum_probs=248.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHG--ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
-....+++..|.+...++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+. .|..|...+-.+|...++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhh
Confidence 345678899999999998876 35543 3334444 4688999999999988877653 3888888888899999999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh---------H
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA---------S 167 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~ 167 (504)
++|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+.-|...-..|+.+--.+...... .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999999877 5677888888889999888876655555555544443434444332222221111 2
Q ss_pred HHHHHHHHHhhCC-CCCChhhHHHHHHHHHccCChhhHHHHHHH-HHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 048258 168 EAAAILRKMGDRG-YLPESSTFDYTVTCLVTGLDLNETCGILDT-FIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNH 245 (504)
Q Consensus 168 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (504)
-|.+.++.+.+.+ ..-+..-.......+...|++++|++++.. ..+.-.+-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3455555655543 222233333344455667889999988843 33332333444445666777788888888888888
Q ss_pred HHhCCCCCCHHHH----HHHHH-H--------HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---hcCCchHHH
Q 048258 246 VFKDRLVSNVNSY----NMVID-C--------FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH---CKDAEVHKT 309 (504)
Q Consensus 246 ~~~~~~~~~~~~~----~~l~~-~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a 309 (504)
++..+.. |-..| ..++. . +...+..+...+...+..... ....|-+-+.+. ..-|+.+++
T Consensus 252 Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 252 LLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred HHHhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHH
Confidence 8877644 21111 11111 1 111122333333333322221 112222223322 234666665
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCC-----HH
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-------TYNILIRSLCAIGD-----VA 377 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~ 377 (504)
...|-+ +.|-.| .+..=+..|...=..++-..++....... ++.. .+...+..-...|. .+
T Consensus 328 ~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 328 LSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 444322 222122 12222222332223333334443333221 1111 12222222223332 22
Q ss_pred HHHHHHHHHH---hC------CCCCCHH---------hHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCcccHHHH
Q 048258 378 RSLRLFQKMQ---AD------RISPDIY---------TFNALIQSFCRMNKIE---KAEKAFFSMLTLGLRPDNFSYSAL 436 (504)
Q Consensus 378 ~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l 436 (504)
.-..++++.. +. ++-|+.. +.+.|++.|.+.++.. +|+.+++.-.... +.|..+--.+
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlL 479 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLL 479 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHH
Confidence 2333332221 11 1223322 2366778888888765 4445555554432 2334444578
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 437 IKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
+..|.-.|-+..|.++|+.+--+.+.-|..-+. +..-+...|++..+...++...
T Consensus 480 iriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 480 IRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred HHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHH
Confidence 889999999999999999987665554443322 3344455667777666665544
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=5.7e-06 Score=81.46 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=173.8
Q ss_pred CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 048258 217 KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR-LVS---NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVT 292 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (504)
|.+...|...|......++.+.|.++.++++..- +.- -...|.++++.-...|.-+...++|++..+.. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 5566778888889999999999999999988642 111 23467777777777888899999999988763 13456
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHH
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP-PNTITYNILIRSLC 371 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 371 (504)
|..|...|.+.+..++|.++++.|.+. +......|..++..+.++++-+.|..++.++.+.-.+ -......-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888899999999999999999999875 2357788999999999999999999999999876211 13334555666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCh
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN--FSYSALIKALIKSGRF 446 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 446 (504)
+.|+.+.+..+|+...... +.....|+..++.-.++|+.+.++.+|++++..++.|-. ..|...+.-=-..|+-
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 8999999999999998763 446779999999999999999999999999998776542 2344444333334443
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.81 E-value=1.5e-06 Score=73.44 Aligned_cols=186 Identities=10% Similarity=0.051 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hH
Q 048258 289 NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK-P-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI---TY 363 (504)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 363 (504)
....+..+...+...|+++.|...++.+...... | ....+..+..++...|++++|+..++++.+.... +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 4455666667777788888888888877665321 1 1235566667777788888888888887765321 222 34
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHH
Q 048258 364 NILIRSLCAI--------GDVARSLRLFQKMQADRISPDI-YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYS 434 (504)
Q Consensus 364 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 434 (504)
..+..++... |++++|.+.++++... .|+. ..+..+..... .... .. ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence 4445555443 5677777777777664 2332 22222111100 0000 00 0112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 435 ALIKALIKSGRFDEAKQTFLSMEQNGC--NPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
.+...+.+.|++++|...++++.+... +.....+..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456678899999999999999987521 1234678889999999999999999988887653
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=2.6e-06 Score=68.43 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
..+-..+...|+-+....+....... .+.|......++....+.|++..|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 44445555556655555555553322 1335555555666666677777777777766664 255666777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 374 GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
|+.+.|..-|.+..+.. .-+....+.+...+.-.|+++.|..++......+ .-|...-..+.-+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777766666642 2344456666666666677777777766666543 224555556666666667777776665
Q ss_pred HHHH
Q 048258 454 LSME 457 (504)
Q Consensus 454 ~~~~ 457 (504)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 4443
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.8e-05 Score=63.74 Aligned_cols=250 Identities=13% Similarity=0.067 Sum_probs=118.5
Q ss_pred CCCCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 048258 1 ISFLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (504)
|...+..|+...|+ ++-+.=.|++..++..-+..... +.++..-..+-++|...|++..... +++... .|..
T Consensus 1 m~~~~~g~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~l 72 (299)
T KOG3081|consen 1 MSSMEAGPEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPL 72 (299)
T ss_pred CCccccCcchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChH
Confidence 44555556555554 35566667777777766655443 2344444555666777776644332 222221 2222
Q ss_pred HhHHHHHHHHHhcCChhhH-HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEV-FRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYR 159 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (504)
.....+......-++.++. .++.+.+.......+......-...|.+.|++++|++...... +..+...-...
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHH
Confidence 2222222222222332222 2344444443332232223333445666677777766655421 11222222233
Q ss_pred HhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 048258 160 LSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR 235 (504)
Q Consensus 160 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (504)
+.+..+.+-|.+.+++|.+. .+..|.+.+..++.+ .++..+|.-+|+++.+. .+|+..+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 45555666666666666553 144455545444433 23455555555555543 24455555555555555555
Q ss_pred cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 236 DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
+++|..+++.++..... ++.+...++.+-...|
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 55555555555544433 3444444443333333
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=3.7e-06 Score=77.25 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLC 336 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (504)
.-..+...+...|-...|+.+|+++. .|..++.+|+..|+..+|..+..+..+. +|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677888888888888888764 4566778888889999999888887774 678888888888877
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 337 RAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
...-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888766442 11222222334789999999999887763 4456688888888889999999999
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 417 AFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 417 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.|...+.. .|+ ...|+.+-.+|.+.|+-.+|...+.++.+.+ ..+..+|..........|.+++|.+.+.++...
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999885 555 6789999999999999999999999999876 556777888888888999999999999998754
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=6.3e-06 Score=80.09 Aligned_cols=234 Identities=13% Similarity=0.010 Sum_probs=115.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...|..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID-------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh--------------
Confidence 345567777777777777777777777665542 22233333333345555555544443 2221
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
......++.-+..++..+... .-+...+..+..+|-+.|+.++|.++++++++..+. +..+.|.+...|... +.+
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 111122222222222222222 113345556666666666666666666666666543 555666666666666 666
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHH-----HHccCChhhHHHHHHHHHhc-CCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 168 EAAAILRKMGDRGYLPESSTFDYTVTC-----LVTGLDLNETCGILDTFIKR-GVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
+|.+++.+....-+ +..-|+.+... .....+.+.-.++.+.+... +..--..++..+-..|....+++++..
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 66666655543210 00011111100 00112222333333333332 222223444555566667777888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
+++.+++..+. |.....-++.+|.
T Consensus 245 iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCc-chhhHHHHHHHHH
Confidence 88888877655 5566666666665
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=1.5e-08 Score=54.51 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=20.2
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQM 36 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 36 (504)
|++||..+|+++|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666655
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.4e-08 Score=54.68 Aligned_cols=32 Identities=50% Similarity=0.972 Sum_probs=15.7
Q ss_pred CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048258 75 GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIM 106 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 106 (504)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=3.6e-06 Score=67.96 Aligned_cols=155 Identities=12% Similarity=0.138 Sum_probs=112.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
+..|...|+++.+......+.. |. ..+...++.++++..++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3467888888876544432221 10 01223667788888888877764 55788899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHH-HccCC--HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSF-CRMNK--IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
++|...+++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988864 44666777777764 56676 589999999999864 335677788888889999999999999
Q ss_pred HHHHhcCCCCChhh
Q 048258 454 LSMEQNGCNPDSYT 467 (504)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (504)
+++.+.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 9998763 454443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.7e-05 Score=63.97 Aligned_cols=248 Identities=12% Similarity=0.100 Sum_probs=139.1
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048258 194 CLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR 273 (504)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (504)
-+.-.|++..++.......... .+...-..+.++|...|.+.....- +... ..+.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHH
Confidence 3344455555555444433321 3344444455666666655433221 1111 12233333333333333444443
Q ss_pred HH-HHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 274 AT-EICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 274 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (504)
-+ ++.+.+.......+......-...|+..+++++|.+...... +......=+..+.+..+++-|...+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334444444333333333344456777888888877776521 23333333445667777888888888887
Q ss_pred HCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 048258 353 EWGVPPNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428 (504)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 428 (504)
+.. +..+.+.|..++.+ .+.+..|.-+|+++.+. .+|+..+.+....++...|++++|..+++.+.... ..
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 642 55566666666654 34577788888888764 47777788888888888888888888888887764 33
Q ss_pred CcccHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 048258 429 DNFSYSALIKALIKSGRFDE-AKQTFLSMEQ 458 (504)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 458 (504)
++.+...++.+-...|...+ ..+.+.++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 45666555555555565433 3445555554
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=2.2e-06 Score=68.91 Aligned_cols=166 Identities=13% Similarity=-0.042 Sum_probs=130.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
|... ..+-..+...|+-+....+........ +.|......++....+.|++..|...+.+..... ++|...++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 556667777888888888777765432 4466667778888889999999999999988764 568889999999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhh
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNE 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (504)
+|.+.|+++.|..-|.+..+..+. +....+.+...+.-.|+.+.|..++......+.. +...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 999999999999999998887665 5567777888888899999999999888765433 67777888888889999999
Q ss_pred HHHHHHHHHhc
Q 048258 204 TCGILDTFIKR 214 (504)
Q Consensus 204 a~~~~~~~~~~ 214 (504)
|..+...-...
T Consensus 221 A~~i~~~e~~~ 231 (257)
T COG5010 221 AEDIAVQELLS 231 (257)
T ss_pred HHhhccccccc
Confidence 99887765543
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=9.7e-06 Score=78.83 Aligned_cols=221 Identities=11% Similarity=0.010 Sum_probs=150.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRS 120 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (504)
+.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++.+++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 456778999999999999999999999987766 344 33444444466677776666555 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD 200 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (504)
......++.-..-++..+... + .+..++..+..+|.+.|+.+++.++++++++.. .-|....+.+...+... +
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~-~-~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLY-G-ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhh-h-hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222222332222222223222 1 244577788999999999999999999999886 33788999999999999 9
Q ss_pred hhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC-------------------CCCCHHHHHHH
Q 048258 201 LNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR-------------------LVSNVNSYNMV 261 (504)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l 261 (504)
+++|.+++.+.... +....++..+.+++..+.... ...-..++..+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 99999999988765 333334444444444444332 22234455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 048258 262 IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC 301 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (504)
-..|...+++++++.+++.+.+.... |.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 67788888999999999999988644 6666777777665
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=2.4e-06 Score=65.15 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+++.... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555555666666666666655542 3344555555555666666666666666666542 2344555555555666
Q ss_pred cCChhHHHHHHHHHHh
Q 048258 443 SGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~ 458 (504)
.|++++|+..|+....
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666655
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=1.4e-06 Score=70.34 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=120.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
-+..|...|+++.+....+.+.. |. ..+...++.++++..++...+.+ +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34678889999887655533321 11 01223677788888888888765 6688899999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGV-FRCLD--PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
+++|...|++..+... .+...+..+..++ ...|+ .++|.+++++..+..|. +..++..+...+...|++++|...
T Consensus 89 ~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998753 3667777777764 67777 59999999999999887 677888888899999999999999
Q ss_pred HHHHhhCCCCCChhhH
Q 048258 173 LRKMGDRGYLPESSTF 188 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~ 188 (504)
++++.+.. .|+..-.
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99998764 3344333
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=1.8e-05 Score=76.15 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=157.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048258 114 NEATVRSLVHGVFRCLDPHKAFE-LLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (504)
++.....+=.+...-|..++|-+ ++.+.. .++....+.....+++.-....... ...+...+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 33344444445555666666643 333221 1333333333333333333333322 334678888888
Q ss_pred HHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048258 193 TCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (504)
......|.+++|..+++.+.+.. +.+......++..+.+.+++++|...+++.+...+. +......+..++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchH
Confidence 99999999999999999998863 445667888888999999999999999999988766 7788888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 273 RATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (504)
+|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+....|+.++. +...-...++++.
T Consensus 172 ~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 9999999998743 2357888888888999999999999999887653 234455554432 3344455566554
Q ss_pred HCC----CCCChhhHHHHHHHHHhc
Q 048258 353 EWG----VPPNTITYNILIRSLCAI 373 (504)
Q Consensus 353 ~~~----~~~~~~~~~~l~~~~~~~ 373 (504)
-.+ .+....+....+..+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhhc
Confidence 332 233334455555555543
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.64 E-value=1.4e-06 Score=66.42 Aligned_cols=111 Identities=10% Similarity=-0.100 Sum_probs=73.4
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 048258 31 LKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
.+|++..+. .|+ .+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555543 232 24445666677777777777777777664 4466677777777777777777777777777654
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 111 VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+.+...+..+..++...|++++|...|+......|.
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 235566777777777777777777777777766554
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=3.2e-05 Score=74.50 Aligned_cols=235 Identities=13% Similarity=0.158 Sum_probs=164.5
Q ss_pred cHHhHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHH
Q 048258 79 NVYTYTILIDGFCNAKRVAEVF-RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLL 157 (504)
Q Consensus 79 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (504)
++.....+=.+.+..|+.++|- +++.+.. .++....+.....+++.-...+....+. +...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRRYPH-TELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHhccc-cHHHHHHHH
Confidence 4444444445556667766663 3444433 2233333333444444444444444444 578888899
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCc
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRD 236 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (504)
....+.|..++|+.+++...+. .| +......+...+.+.+++++|+..+++..... +.+......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999886 44 45567888899999999999999999999875 55778889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHH
Q 048258 237 VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVML 316 (504)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (504)
++|..+|+++...++. +..++..+..++...|+.++|...|+...+.. .+....|+..+ ++...-...++++
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHc
Confidence 9999999999985543 68889999999999999999999999988763 23445555444 3344455556655
Q ss_pred HHC----CCCccHHHHHHHHHHHHh
Q 048258 317 LEC----GFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 317 ~~~----~~~~~~~~~~~l~~~~~~ 337 (504)
.-. |.+....+...++..+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhh
Confidence 432 233333445555555543
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=4.7e-05 Score=60.97 Aligned_cols=189 Identities=12% Similarity=0.146 Sum_probs=132.6
Q ss_pred hcCCHHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 267 KVNMMDRATEICREMRDR---D-IAPNLV-TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
...+.++..+++.++... | ..++.. .+..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345788888888887653 3 333433 34455556677888888998888887653 33333333223335567889
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
++|+++++.+.+.+ +.|..++-.=+...-..|+..+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988875 556677766666666778877888888887776 5678889999999999999999999999988
Q ss_pred HhCCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHhc
Q 048258 422 LTLGLRPDNFSYSALIKALIKSG---RFDEAKQTFLSMEQN 459 (504)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 459 (504)
+-.. +.++..+..+...+.-.| +..-+.+.|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8752 234445566666655444 466788888888874
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=0.00021 Score=57.43 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 048258 223 YLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302 (504)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (504)
+..++-+....|+.+.|..+++++...-+. +..+-..-.-.+-..|++++|+++++.+.+.+ +.|..++..-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 445555666667777777777766654322 33333333333445677777777777777665 2355566655555556
Q ss_pred CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHH
Q 048258 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG---DVARS 379 (504)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a 379 (504)
.|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.++..+..+...+.-.| +.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666666666665554 34577777777777777777777777777776542 334444444554443333 45566
Q ss_pred HHHHHHHHhC
Q 048258 380 LRLFQKMQAD 389 (504)
Q Consensus 380 ~~~~~~~~~~ 389 (504)
.++|.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 6677666654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=0.00029 Score=62.32 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=47.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHccCChhhH
Q 048258 126 FRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE-SSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 204 (504)
...|++++|+..++.+....|. +...+......+.+.++..+|.+.++++... .|+ ......+..++.+.|+..+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555555555554444332 3344444444444455555555555544443 222 22223334444444444444
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
+.+++...... +.|+..|..+.++|...|+..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchH
Confidence 44444444332 334444444444444444433
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=9e-06 Score=61.78 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444444555555555555555554432 2244445555555555555555555555555432 2233444444555555
Q ss_pred cCChhHHHHHHHHHHh
Q 048258 443 SGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~ 458 (504)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=7.8e-06 Score=62.13 Aligned_cols=101 Identities=15% Similarity=0.064 Sum_probs=59.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33444555555666666666666666665543 3355556666666666666666666666665543 234455555566
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC
Q 048258 124 GVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
++...|++++|.+.++...+..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhcc
Confidence 66666666666666666666544
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=1.8e-05 Score=60.68 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=61.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD---RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTIL 86 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l 86 (504)
.|..++..+ ..++...+...++.+.+.+ +.+ ....-.+...+...|++++|...|+++......|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 2566666666666665543 222 12223344555566666666666666665431121 1123334
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIR 140 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (504)
...+...|++++|+..++..... ...+..+.....++.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555566666666666543222 12333444455555555666666555544
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00029 Score=62.26 Aligned_cols=202 Identities=14% Similarity=0.032 Sum_probs=132.2
Q ss_pred CCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 048258 24 NSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFR 101 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (504)
.+..++...-++++..+ -+|+...+...+.+......-..+-.++.+..+. .-...-|..-+. +...|++++|++
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHH
Confidence 44566666666666442 1456666666666554433333333333333331 112333544443 446788888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 048258 102 VLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181 (504)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (504)
.++.+... .+-|++.+......+...++.++|.+.++++....|.. ....-.+..++.+.|++.+|..+++......
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 88887765 23455666667778888888888888888888887764 5666677888888888888888888877653
Q ss_pred CCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 182 LPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+-++..|..+..+|...|+..++.....+ .+...|+++.|...+....+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 33777888888888888887776655433 445567777777777666654
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=2.7e-05 Score=59.71 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHH
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPD---IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD--NFSYSALI 437 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 437 (504)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344433 3566666666666666542 222 12233344556667777777777777776541221 12233455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 438 KALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..+...|++++|+..++..... ......+...+.++.+.|++++|+..|+.+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666777777777777553322 223445566677777777777777777654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=4.3e-05 Score=67.91 Aligned_cols=129 Identities=14% Similarity=0.086 Sum_probs=102.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
......++..+...++++.|+.+|+++.+.. |+ ....+++.+...++..+|.+++.+..+.. +.+...+......
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344566677777889999999999998763 54 34457777777888889999988888763 3466677777788
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
+.+.++++.|+++.++.....|. +-.+|..|..+|...|+++.|+..++.+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 88999999999999999888765 6678888999999999999999998887643
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=4.4e-05 Score=67.86 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN 409 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 409 (504)
.++..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+...+..-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555542 22 23334444444555555555555555431 223334444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
+++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555553 232 3345555555555555555555554443
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=5.4e-06 Score=45.47 Aligned_cols=33 Identities=52% Similarity=0.898 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPN 79 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 79 (504)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555544
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=6.4e-05 Score=53.03 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+..+...+...|+++.|+..++.+.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445556666666666666666665543 3334555556666666666666666666665543 2333455555556666
Q ss_pred cCChhhHHHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKE 108 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~ 108 (504)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.0092 Score=55.59 Aligned_cols=206 Identities=11% Similarity=0.011 Sum_probs=128.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--------cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGL-GYAP--------NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC 112 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 112 (504)
.|.+..|..+...-...-.++.|...|-+...- |++. +...-.+=+ -+--|++++|.++|-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhhhhhhccchhh--
Confidence 688999998888777777777887777665432 2111 000111111 123588999999998887663
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 048258 113 PNEATVRSLVHGVFRCLDPHKAFELLIRFMER-EPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYT 191 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 191 (504)
..+..+.+.||+-...++++.--.. ....-...|+.+...+.....+++|.++|..-.. ....
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 2355666778877666665431111 0111235778888888888888888888876542 1234
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM 271 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (504)
+.++.+..++++-..+... ++.+....-.+..++.+.|.-++|.+.|-+... + ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHHH
Confidence 5666666666655444433 345566777788888888888888876644321 1 2344567777888
Q ss_pred HHHHHHHHHH
Q 048258 272 DRATEICREM 281 (504)
Q Consensus 272 ~~a~~~~~~~ 281 (504)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8888776554
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=8e-06 Score=44.77 Aligned_cols=33 Identities=42% Similarity=0.734 Sum_probs=16.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 464 (504)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=7.4e-06 Score=44.50 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=8.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+.++.+|++.|+++.|.++|+.|.
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333333333333333333333
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=1e-05 Score=55.25 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHhhhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCK-PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFR 101 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (504)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ +.+......+.+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666666666554311 1333344455666666666666666655 2221 1122333344555556666666666
Q ss_pred HHHH
Q 048258 102 VLEI 105 (504)
Q Consensus 102 ~~~~ 105 (504)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.05 E-value=0.00012 Score=65.51 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHH
Q 048258 250 RLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD--IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFT 327 (504)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (504)
+...+......+++.+....+.+.+..++....... ...-..|..++++.|.+.|..+.+..++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334466666677777777777888888887776652 222345566888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
++.++..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766666666666656555554
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.04 E-value=0.0003 Score=52.85 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGV 125 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (504)
...-.+..-+...|++++|..+|+.+...+ +-+..-|..|.-++-..|++++|+..|......++ .|+..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 333444555667788888888888777664 33566667777777777888888888887777653 4666777777778
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 048258 126 FRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~ 145 (504)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 88888888888887776653
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00023 Score=52.60 Aligned_cols=98 Identities=11% Similarity=-0.075 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHhHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQC--KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA--PNVYTYTILI 87 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 87 (504)
++......+.+.|+++.|...|+.+.+... +.....+..+..++.+.|+++.|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555666666666666666666654421 011234445556666666666666666666543211 1133455555
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5556666666666666666555
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=0.00013 Score=65.31 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=103.7
Q ss_pred cCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048258 214 RGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR--LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLV 291 (504)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (504)
.+.+.+......++..+....+.+.+..++.+..... ...-..+..++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4456677778888888888888899999888887652 22234455699999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRA 338 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (504)
+++.+|+.+.+.|++..|.++...|...+...++.++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999988777666777777666666665
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.04 E-value=9e-06 Score=44.16 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKP 43 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (504)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999877
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=0.00013 Score=62.88 Aligned_cols=130 Identities=13% Similarity=0.126 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA-IGDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
+|..+++...+.+..+.|..+|.++.+.+ ..+...|......... .++.+.|..+|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666677777777666432 2233344444433223 44555577777666654 344555666666666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPDN---FSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
...|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777666654 22221 25666666666666666666666666653
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.00016 Score=62.17 Aligned_cols=133 Identities=9% Similarity=0.021 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR-IGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|......-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467888888888888888888888887553 3344445444444233 56677788888888765 45677788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNE---ATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.-+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 88888888888888888765 22222 3677777777778888888888777776543
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00022 Score=63.78 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
.-...+...|+++.|+..|+++.+.+ +.+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 34567778899999999999988776 5677888888888899999999999999988875 446778888888888899
Q ss_pred ChhhHHHHHHHHHHcC
Q 048258 95 RVAEVFRVLEIMKERN 110 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~ 110 (504)
++++|+..|++..+.+
T Consensus 85 ~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 85 EYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999888763
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=0.00016 Score=50.90 Aligned_cols=95 Identities=19% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++....... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 4456666777888888888888877653 33445666777777777888888888887776532 244566667777777
Q ss_pred cCChHHHHHHHHHHHhc
Q 048258 128 CLDPHKAFELLIRFMER 144 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~ 144 (504)
.|+++.|...+......
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 77777777777766554
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.01 E-value=0.0027 Score=53.28 Aligned_cols=178 Identities=9% Similarity=0.008 Sum_probs=89.7
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPR--FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK 267 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (504)
.....+...|++++|.+.|+.+......+. ......++.++.+.+++++|...+++..+..|......+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344445566777777777777766532111 122355667777778888888888777776554333333333333221
Q ss_pred --cC---------------C---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHH
Q 048258 268 --VN---------------M---MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFT 327 (504)
Q Consensus 268 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (504)
.+ + ..+|+..|+.+.+. |-.+.-..+|...+..+... .- ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~---la-~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR---LA-KY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH---HH-HH
Confidence 00 1 12233333333332 22222233343333332211 00 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMVEW--GVPPNTITYNILIRSLCAIGDVARSLRLFQKM 386 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (504)
-..+...|.+.|.+..|+.-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 113444566677777777777776653 11222334556666677777777766665544
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.00 E-value=0.00023 Score=52.60 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYA--PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC--PNEATVRSLV 122 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 122 (504)
++-.++..+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|++++|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666777788888888888888765311 11345666777788888888888888887765321 1244566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.++.+.|+.++|.+.++++....|.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777788888888888887777654
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.0017 Score=56.33 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS-----NVN-SYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.+..++..+.+.|++++|.++|+++....... +.. .+-..+-++...|++..|.+.++.....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444555555555555555555554432211 111 1222233444556666666666665544
No 161
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=0.00012 Score=50.68 Aligned_cols=74 Identities=16% Similarity=0.290 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQC-KPDRFTYNILIHGICRIG--------VVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3444444555555555555555555 455555555555444321 1223444444444444455555555444
Q ss_pred HHH
Q 048258 88 DGF 90 (504)
Q Consensus 88 ~~~ 90 (504)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 162
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.004 Score=52.25 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
.+...|.+.|.+..|..-++.+++.-+. ........+..+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3444555555565566555555544221 12334445556666666666666555444
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=1.1e-05 Score=54.99 Aligned_cols=81 Identities=20% Similarity=0.318 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 408 MNKIEKAEKAFFSMLTLGLR-PDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHD 486 (504)
Q Consensus 408 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 486 (504)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ ...+ +.+......++.++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777765321 1334445567777777777777777777 3221 1223444455777777777777777
Q ss_pred HHHH
Q 048258 487 IVKT 490 (504)
Q Consensus 487 ~~~~ 490 (504)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.94 E-value=0.00047 Score=51.86 Aligned_cols=95 Identities=8% Similarity=-0.065 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
.....+...+...|++++|..+|+.+...++. +..-|..+..++-..|++++|+..|......++ .|+..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34444455555555555555555555554433 444455555555555555555555555555442 2445555555555
Q ss_pred hcCCchHHHHHHHHHHH
Q 048258 301 CKDAEVHKTRELLVMLL 317 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~ 317 (504)
...|+.+.|.+.|+..+
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555444
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.012 Score=51.31 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=53.2
Q ss_pred HhcCCchHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048258 300 HCKDAEVHKTRELLVMLLECG---FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
..+.|++..|.+.|.+.+... ..++...|.....+..+.|+.++|+.-.+...+.+. .-...|..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766432 344555566666666677777777777777665420 0111333334455566777
Q ss_pred HHHHHHHHHHHhC
Q 048258 377 ARSLRLFQKMQAD 389 (504)
Q Consensus 377 ~~a~~~~~~~~~~ 389 (504)
++|.+-++...+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00019 Score=59.29 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=58.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 048258 55 ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKA 134 (504)
Q Consensus 55 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (504)
+.+.++|.+|+..|.+..+.. +.|++.|..-..+|++.|.++.|++-.+.....+. .-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence 455667777777777776663 34555566666667777777777777766665521 1233666677777777777777
Q ss_pred HHHHHHHHhcCCC
Q 048258 135 FELLIRFMEREPL 147 (504)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (504)
.+.|++.++..|.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 7777776666554
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.90 E-value=0.00079 Score=53.44 Aligned_cols=114 Identities=15% Similarity=0.032 Sum_probs=59.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+... .+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3445555555555666666666665554321111 23455555555566666666666665555421 13334444445
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 124 GVFRCLD--------------PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 124 ~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
++...|+ +++|.+.+++.....|.. +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN----YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh----HHHHHHHHHhcC
Confidence 5555444 467777887777765432 444444444433
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.89 E-value=0.006 Score=46.82 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=91.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhH
Q 048258 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR---ISPDIYTF 398 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 398 (504)
.|+...--.|..+..+.|+..+|...|++...--+..|....-.+.++....+++..|...++++-+.. -.|| ..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 466666667777788888888888888887765555677777777777777888888888888776652 1223 34
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 399 NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 399 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
..+.+.+...|++.+|+..|+..... -|+...-......+.+.|+.+++..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45667777788888888888887774 45555545555666777777766655554443
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0013 Score=61.69 Aligned_cols=135 Identities=10% Similarity=-0.032 Sum_probs=73.8
Q ss_pred CCCHHhHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc--------CChhhHHHHHHHHHH
Q 048258 42 KPDRFTYNILIHGICR--IG---VVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA--------KRVAEVFRVLEIMKE 108 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 108 (504)
+.+..+|...+++... .+ +...|+.+|++..+.. +-+...|..+..++... .+...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5566666666665432 22 2556777777776653 22233444433333211 112233333333333
Q ss_pred c-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 109 R-NVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 109 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
. ....++..+..+.......|++++|...+++.....+ +...|..+...+...|+.++|.+.+++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 1223445555555555566777777777777777664 3456666777777777777777777776554
No 170
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.88 E-value=0.021 Score=52.54 Aligned_cols=410 Identities=10% Similarity=0.023 Sum_probs=225.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR-FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
..|..++.---...+.+.+..++..+... -|.. ..|......-.+.|..+.+.++|++..+ |++.+...|...+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 34555665555555667777777777754 3443 3455666666778899999999999886 466677778777766
Q ss_pred HH-hcCChhhHHHHHHHHHHc-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHH---hcC
Q 048258 90 FC-NAKRVAEVFRVLEIMKER-NVC-PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRL---SNN 163 (504)
Q Consensus 90 ~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~ 163 (504)
+. ..|+.+.....|+.+... |.. .....|...+..-..++++.....+++++++... ..++.....| ...
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHHhc
Confidence 55 447788888888888765 321 3455677788877888899999999999887522 2222222111 111
Q ss_pred ------CChHHHHHHHHHHhhC----CCCCChhhHHHHHHHHHc-cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 048258 164 ------SMASEAAAILRKMGDR----GYLPESSTFDYTVTCLVT-GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYK 232 (504)
Q Consensus 164 ------~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (504)
...+++.++-.....+ ...+....+...+.-... .+.++++...+...... --..+-.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~-----------~~~~~~~ 267 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI-----------HEKVYQK 267 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH-----------HHHHHHh
Confidence 1122222222211110 000011111111111000 11111111111111110 0011112
Q ss_pred cCCcHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc
Q 048258 233 AGRDVEGDRYLNHVFKDR-------LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE 305 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (504)
.....+....++...+.. ..++...|...+......|+.+.+.-+|+...-.- ..-...|-..+......|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCc
Confidence 222223333333333221 12245678888888889999999999998876431 1122344444444455588
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHH---H
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-TYNILIRSLCAIGDVARSL---R 381 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~---~ 381 (504)
.+.+..++.+..+...+..+.+--.-....-..|++..|..+++.+...- |+.. .-..-+....+.|+.+.+. .
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 88888888777665444333322222223445789999999999998863 4433 3333445556778888777 3
Q ss_pred HHHHHHhCCCCCCHHhHHHHHH-----HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 048258 382 LFQKMQADRISPDIYTFNALIQ-----SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSG 444 (504)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (504)
++...... .-+......+.- .+.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 425 l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 425 LYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 33333322 112222222221 233457889999999999886 3566677777777776655
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.002 Score=55.88 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----Chh-hHHHHHHHHhcCCchHHHHHHHHHHHHCC--CCc--cH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-----NLV-TFNTLISGHCKDAEVHKTRELLVMLLECG--FKP--DK 325 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~ 325 (504)
.++..+...+.+.|++++|.++|+++....... +.. .+...+-++...||...|.+.++...... +.. ..
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345567778889999999999999887653221 111 22233445667789999999999887542 222 23
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Q 048258 326 FTFNSMIDCLCRA--HRFEDALDCLSEMVE 353 (504)
Q Consensus 326 ~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 353 (504)
.....|+.++-.. ..+..++.-|+.+.+
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 4555666665432 335555555555543
No 172
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.85 E-value=0.018 Score=50.90 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=44.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+.|..+|-.+++-+..+|.+++.+++++++...- +--+.+|..-+++-...+++.....+|.+.... ..+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHhHHHHH
Confidence 4455556666666666666666666666665321 223345555555555556666666666666554 2344455554
Q ss_pred HH
Q 048258 87 ID 88 (504)
Q Consensus 87 ~~ 88 (504)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 44
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.85 E-value=0.00054 Score=61.32 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIE 412 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 412 (504)
..+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|+..++++.... +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34555666777777777666653 3355566666666666677777776666666642 234455666666666666666
Q ss_pred HHHHHHHHHHhC
Q 048258 413 KAEKAFFSMLTL 424 (504)
Q Consensus 413 ~a~~~~~~~~~~ 424 (504)
+|...|+++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666666663
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.017 Score=50.46 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
.....+.+..++..|+..+..+.+.. +.+...|.--+..+...|++++|.-=.++-.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 34445556667777777777777664 4445555555556666666666665554443
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0027 Score=48.66 Aligned_cols=157 Identities=14% Similarity=-0.003 Sum_probs=108.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+..+..+.=|++....-..+-... .|++..--.|..++.+.|++.+|...|++...--+.-|......+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 334444444555544433333322 567777777888899999999999999998875566688888888888888899
Q ss_pred hhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
+..|...++.+-+.+. ..++.....+.+.+...|.+.+|...|+....-.|.+....+.. ..+.+.|+.+++..-+.
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~--e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA--EMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH--HHHHHhcchhHHHHHHH
Confidence 9999999998877641 11333455677888889999999999999888777665554432 23456676666554444
Q ss_pred HH
Q 048258 175 KM 176 (504)
Q Consensus 175 ~~ 176 (504)
.+
T Consensus 218 ~v 219 (251)
T COG4700 218 AV 219 (251)
T ss_pred HH
Confidence 33
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.83 E-value=7.4e-05 Score=48.54 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 21 VKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
.+.|++++|+..|+.+.+.. |.+...+..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777664 446667777777777777777777777777765
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.82 E-value=0.02 Score=50.63 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=74.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHh------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH-
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFT------YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC- 91 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 91 (504)
.+.+++++.+|.++|.++.+.. ..++.. -+.++++|.. .+.+.....+....+. .| ...|..+..++.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3567788888888888887653 223222 2456666654 3455555555555443 22 234555554433
Q ss_pred -hcCChhhHHHHHHHHHHc--CCCC---ChhhH---------HHHHHHHHhcCChHHHHHHHHHHHhcC----CCcchhH
Q 048258 92 -NAKRVAEVFRVLEIMKER--NVCP---NEATV---------RSLVHGVFRCLDPHKAFELLIRFMERE----PLTQKLV 152 (504)
Q Consensus 92 -~~g~~~~a~~~~~~~~~~--~~~~---~~~~~---------~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 152 (504)
+.+.+.+|.+.+..-.+. +..+ |.... ...+.+++..|++.+++.++.++...- ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 667888888887776654 2211 11111 122445566677777776666655432 2245555
Q ss_pred HHHHHHHH
Q 048258 153 CNTLLYRL 160 (504)
Q Consensus 153 ~~~l~~~~ 160 (504)
|+.++-.+
T Consensus 170 yd~~vlml 177 (549)
T PF07079_consen 170 YDRAVLML 177 (549)
T ss_pred HHHHHHHH
Confidence 55544333
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.00097 Score=52.74 Aligned_cols=81 Identities=11% Similarity=0.074 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 325 KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP--NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
...+..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3344555555666677777777777766542221 12356666667777777777777777766542 22233444444
Q ss_pred HHHH
Q 048258 403 QSFC 406 (504)
Q Consensus 403 ~~~~ 406 (504)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.80 E-value=0.022 Score=50.42 Aligned_cols=378 Identities=14% Similarity=0.140 Sum_probs=178.7
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCC------------cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCChhh
Q 048258 56 CRIGVVDEALRLVKQMEGL--GYAP------------NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV----CPNEAT 117 (504)
Q Consensus 56 ~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 117 (504)
-+.+.++.|++.+...... +..| |-..-+..++++...|++.++..+++++..+=+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4667788888877776654 2221 111224455666778888888887777765432 256667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT 197 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (504)
|+.++-.+.+ ..|-++.+.....--.-|..++..|.+.=. .++.-.-..+.|....+..++....-
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 7765555443 233333332111111122223333322111 11110111223444444444433322
Q ss_pred c--CChhhHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcCCcHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCC
Q 048258 198 G--LDLNETCGILDTFIKRGVKPRFST-YLLLMEALYKAGRDVEGDRYLNHVFKDRLV----SNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 198 ~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 270 (504)
. ....--.++++.....-+.|+... ...+...+.. +.+++..+.+.+....+. .-..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 223333444444444444454433 2223333332 445555554444433211 123456777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhH-------HHHHHHHh-cCC---chHHHHHHHHHHHHCCCCccHH-HHHHHH---HHH
Q 048258 271 MDRATEICREMRDRDIAPNLVTF-------NTLISGHC-KDA---EVHKTRELLVMLLECGFKPDKF-TFNSMI---DCL 335 (504)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~ 335 (504)
...|...+.-+...++ +...- ..+-+..+ ... +...-+.+|+.....++ |.. .-..++ .-+
T Consensus 314 T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 314 TEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHL 389 (549)
T ss_pred HHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHH
Confidence 8888877777665432 22111 11222222 111 12233344444444322 221 112222 223
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHH
Q 048258 336 CRAHR-FEDALDCLSEMVEWGVPPNTITYNILI----RSLCA---IGDVARSLRLFQKMQADRISPDI----YTFNALIQ 403 (504)
Q Consensus 336 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 403 (504)
-+.|. -++|+.+++.+.+.. +-|...-|.+. ..|.. ...+.+-..+-+-+.+.|++|-. ..-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 44454 677888887777642 22333322222 12211 12233333333444455655532 23333333
Q ss_pred H--HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 404 S--FCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 404 ~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
+ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++..+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3 3456777777666555555 4677777777777777777777777777654
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.78 E-value=0.011 Score=48.33 Aligned_cols=169 Identities=16% Similarity=0.097 Sum_probs=83.8
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK 267 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (504)
.....+...|++.+|++.|+.+.... .+--......++.++.+.|+++.|...++.+++..|......+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34445556677777777777776652 1223455666777777777777777777777766544333323322222221
Q ss_pred cCC-------------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 268 VNM-------------MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 268 ~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
... ..+|... +..++.-|-.+.-..+|...+..+... =...--.+...
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 111 1222222 333344444444445554444444321 01111224555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPNTI----TYNILIRSLCAIGDVARS 379 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a 379 (504)
|.+.|.+..|..-++.+++. -|++. ....++.++.+.|..+.+
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777777777777764 22222 345566666676666543
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0013 Score=54.91 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC---CHHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMN---KIEKAEKA 417 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 417 (504)
.+....-++.-...+ +-|...|..|...|...|+...|..-|.+..+.. .++...+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444444444432 4466677777777777777777777777766652 344555555555543322 34566677
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 418 FFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
|++++... +-|......|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777642 223444555556667777777777777777764
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.77 E-value=0.0011 Score=52.52 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhh-hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCChhhHHHH
Q 048258 26 IDLAYLKFQQMS-VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAP--NVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 26 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
+..+...+..+. ..+.......|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444454543 22212234556666777777788888888888876553222 234677777777788888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-------hcCChHHHHHHH
Q 048258 103 LEIMKERNVCPNEATVRSLVHGVF-------RCLDPHKAFELL 138 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~ 138 (504)
++...... +.....+..+...+. ..|+++.|...+
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 88877653 223344555555555 667766444333
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00089 Score=46.58 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHHhHHHHHHHHHhcC--------ChhhHHHHHHHHHHcCCCCChhhHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLGY-APNVYTYTILIDGFCNAK--------RVAEVFRVLEIMKERNVCPNEATVR 119 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-+++.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999887542 3456778888998888999999998
Q ss_pred HHHHHHHh
Q 048258 120 SLVHGVFR 127 (504)
Q Consensus 120 ~l~~~~~~ 127 (504)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0023 Score=59.99 Aligned_cols=145 Identities=14% Similarity=0.065 Sum_probs=87.3
Q ss_pred CCCccHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 048258 320 GFKPDKFTFNSMIDCLCR--A---HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG--------DVARSLRLFQKM 386 (504)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~ 386 (504)
..+.+...|..++.+... . ++...|..+|++..+.. +.....|..+..++.... +...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345567777777776432 2 23667888888888763 223344554444443221 122333333333
Q ss_pred HhC-CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 387 QAD-RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 387 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
... ....+...+..+.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 12334456666655566678888888888888875 45666777777788888888888888888776 35655
Q ss_pred hhHH
Q 048258 466 YTSN 469 (504)
Q Consensus 466 ~~~~ 469 (504)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5544
No 185
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4e-05 Score=40.49 Aligned_cols=28 Identities=43% Similarity=0.795 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00016 Score=46.36 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=30.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
...+.+.|++++|+..|+++.+.. +-+...+..+..++...|++++|+..|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555554 334555555555555555555555555555443
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=5e-05 Score=40.09 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQ 40 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 40 (504)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.042 Score=51.47 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=116.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHH----------HHHhcCCHHHHHHHHHHHHhCCC
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIH----------GICRIGVVDEALRLVKQMEGLGY 76 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~a~~~~~~~~~~~~ 76 (504)
.|.+..|..+.......-.++.|...|-+.... +.......|-. .-+--|.+++|.++|-.+.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 588899999998888888999999888766542 22221111111 11224889999999988876531
Q ss_pred CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhH
Q 048258 77 APNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN----EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLV 152 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
.|..+.+.|++-...++++.- |...| ...++.+...+.....|++|.+.|..--..
T Consensus 766 ---------Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 345556667776666555431 11112 235667777777777777777776553211
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYK 232 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (504)
...+.++.+...+++-+.+-+.+.+ +....-.+..++.+.|.-++|.+.+-+. + .| ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHH
Confidence 1234444444445444444443332 4555666777777777777776665332 1 11 123445556
Q ss_pred cCCcHHHHHHHHH
Q 048258 233 AGRDVEGDRYLNH 245 (504)
Q Consensus 233 ~~~~~~a~~~~~~ 245 (504)
.+++.+|.++.+.
T Consensus 891 LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 891 LNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665443
No 189
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0035 Score=49.75 Aligned_cols=81 Identities=10% Similarity=-0.003 Sum_probs=36.8
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKP--RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
..+...+...|++++|...+++..+....+ ....+..++..+.+.|++++|...+.++.+..+. +...+..+..++.
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 117 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 333444444455555555554444332111 1234455555555555555555555555544332 3344444444444
Q ss_pred hcCC
Q 048258 267 KVNM 270 (504)
Q Consensus 267 ~~~~ 270 (504)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4444
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00068 Score=56.18 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=55.5
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARS 379 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 379 (504)
+.+.+++.+|+..|...++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 445566666666666666653 2355555566666666666666666666666542 22334566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHhH
Q 048258 380 LRLFQKMQADRISPDIYTF 398 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (504)
++.|++.++. .|+-.+|
T Consensus 169 ~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHhhhcc--CCCcHHH
Confidence 6666666653 4544433
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.66 E-value=0.0019 Score=46.88 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---c-ccHHHHHH
Q 048258 365 ILIRSLCAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD---N-FSYSALIK 438 (504)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~-~~~~~l~~ 438 (504)
.+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|..++++.... .|+ . .....+.-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 345566777888888888888887765544 335666777778888888888888877764 243 1 12222334
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 048258 439 ALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~ 458 (504)
++...|+.++|+..+-....
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56677888888887766553
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.0002 Score=46.61 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEG 73 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 73 (504)
+.+|..+...+...|+++.|+..|++..+.+ +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555556666666666666666655554 344555555555555555 45666665555544
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00035 Score=44.81 Aligned_cols=59 Identities=29% Similarity=0.364 Sum_probs=37.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+...+...|++++|...|+++++.. +-+...+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445666777777777777777653 2255566666777777777777777777766543
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.62 E-value=0.037 Score=48.07 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCChHH
Q 048258 58 IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC--NAKRVAEVFRVLEIMKERNVCPNEA--TVRSLVHGVFRCLDPHK 133 (504)
Q Consensus 58 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 133 (504)
.|+-..|.++-.+..+. +..|......|+.+-. -.|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 46666676666655432 2334444555554433 357777777777777742 2221 12333333345677777
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 134 AFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
|..+-++.-..-+. -...+...+...+..|+++.|+++.+.-+.
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 77776666655444 445666677777777777777777766544
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.62 E-value=0.019 Score=46.95 Aligned_cols=47 Identities=15% Similarity=0.029 Sum_probs=21.6
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcH
Q 048258 191 TVTCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
+...|.+.|.+..|..-++.+++.- .+........++.++.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 3445555566666665555555541 1111233444455555555544
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0049 Score=51.55 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=54.9
Q ss_pred CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCcchhHH
Q 048258 77 APNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL---DPHKAFELLIRFMEREPLTQKLVC 153 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 153 (504)
+-|...|-.|..+|.+.|+++.|...|....+.. .+++..+..+..++.... ...++.++|++++..++. +..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3455566666666666666666666666665542 234444444444443322 234555666666555444 44444
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 154 NTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
..+...+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 45555566666666666666666554
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.026 Score=46.13 Aligned_cols=138 Identities=17% Similarity=0.231 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHH-----H
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNA-----L 401 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 401 (504)
+.+.++.++.-.+.+.-....+++.++...+.++.....+++.-.+.||.+.|...|++..+..-..+...++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45566777777888888888888888876677788888888888888998888888887765433334333333 3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 402 IQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 402 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
...|.-++++..|...+.+....+ ..|+...|.-.-+..-.|+...|++.++.+.+. .|...+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 344556678888888888887764 334444555555556678888899988888875 444433
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.60 E-value=0.002 Score=55.83 Aligned_cols=282 Identities=12% Similarity=-0.025 Sum_probs=149.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CcHHhHHHHHH
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQME----GLGYA-PNVYTYTILID 88 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~ 88 (504)
.-+++.|+.+..+.+|+.+++-| .-| ...|..|..+|.-.+++++|+++...=. ..|-+ -...+-..|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45678888888888888888766 323 3346667777777778888877644311 00100 01223333444
Q ss_pred HHHhcCChhhHHHHHHHHH----HcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 89 GFCNAKRVAEVFRVLEIMK----ERNV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
.+--.|.+++|+-...+-. +.|- ......+..+...|...|+.-... +|. +...++.=+ .
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pe-e~g~f~~ev-----~ 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APE-EKGAFNAEV-----T 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chh-hcccccHHH-----H
Confidence 4445566666665433322 1111 012223444444554443321000 000 000000000 0
Q ss_pred CChHHHHHHHHH-------HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh----cCCC-ccHHHHHHHHHHHH
Q 048258 164 SMASEAAAILRK-------MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK----RGVK-PRFSTYLLLMEALY 231 (504)
Q Consensus 164 ~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~ 231 (504)
..++.|.++|.+ +.+++ .....|..+...|.-.|+++.|+...+.-+. .|-+ .....+..+..++.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~--aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRL--AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH--hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 011222233322 21111 1234566666677777888888877664332 2211 12356777888888
Q ss_pred hcCCcHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHh
Q 048258 232 KAGRDVEGDRYLNHVFKD----RL-VSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-----DIAPNLVTFNTLISGHC 301 (504)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~ 301 (504)
-.|+++.|.+.|+..... +- .........+.+.|.-..++++|+.++.+-... +..-....+.++..+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888999998888765532 21 123344556777777777888888877543221 11224567778888888
Q ss_pred cCCchHHHHHHHHHHH
Q 048258 302 KDAEVHKTRELLVMLL 317 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~ 317 (504)
..|..++|+...+.-.
T Consensus 327 alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHL 342 (639)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 8888888887766544
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0074 Score=43.81 Aligned_cols=90 Identities=18% Similarity=0.054 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHHHH
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPD--RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN----VYTYTILIDG 89 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 89 (504)
...++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44555556666666666666665553322 2334445555666666666666666655431 22 1111112223
Q ss_pred HHhcCChhhHHHHHHHHH
Q 048258 90 FCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~ 107 (504)
+...|+.++|+..+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 445566666666554443
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.0012 Score=52.18 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=73.8
Q ss_pred HHHHHHhhhCCCCCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-----------
Q 048258 30 YLKFQQMSVDQCKPDRFTYNILIHGICR-----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA----------- 93 (504)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 93 (504)
...|+..... ..+..+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445555322 5688888888988875 477888888899999999999999999999886431
Q ss_pred -----CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 94 -----KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 94 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677788888888888888888777777665543
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00031 Score=45.59 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 57 RIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666665543 235555556666666666666666666666654
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00077 Score=43.82 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=35.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKE 108 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 108 (504)
..+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555556666666666666666665553 334555555555555555 46666666655554
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.002 Score=51.07 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=75.4
Q ss_pred CCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhc----------------CCHHHH
Q 048258 6 ISPSTRLYNAVIDALVKS-----NSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRI----------------GVVDEA 64 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a 64 (504)
-..+-.+|..+++.+.+. |..+=....+..|.+-|+..|..+|+.|+..+=+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 455677888888888654 67777888889999999999999999999987652 234789
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 65 LRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
++++++|...|+-||..++..+++.+.+.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 9999999999999999999999999976653
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.0022 Score=55.54 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHh
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMV----EWGVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQA----DR-ISPDIYT 397 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~ 397 (504)
|..|.+.|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .| -.....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444444556666655544322 11211 1122455556666666666666665554422 11 1112233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 398 FNALIQSFCRMNKIEKAEKAFFSMLTL----G-LRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 398 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
.-+|...|.-..++.+|+.++.+-+.. + .--....+.+|..++...|..++|..+.+...
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444555555555555565555443210 0 01123344555555555555555555554443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.46 E-value=0.0027 Score=53.67 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=35.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--chhHHHHHHHHHhcCCC
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNE----ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT--QKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 165 (504)
+.|++++|+..|+.+.+.. |+. ..+..+...|...|++++|...|+.+....|.. ....+..+...+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 3344444444444444431 221 233444444444444444444444444433321 12222233334444445
Q ss_pred hHHHHHHHHHHhh
Q 048258 166 ASEAAAILRKMGD 178 (504)
Q Consensus 166 ~~~a~~~~~~~~~ 178 (504)
.++|..+|+.+..
T Consensus 233 ~~~A~~~~~~vi~ 245 (263)
T PRK10803 233 TAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0049 Score=52.15 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChhhHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPN----VYTYTILIDGFCNAKRVAEVFRVLEIMKERNV--CPNEATVRS 120 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ 120 (504)
.|...+..+.+.|++++|+..|+.+.+.. |+ ..++..+..+|...|++++|...|+.+.+.-. +.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666666542 22 23455566666666666666666666665411 112233444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+..++...|+.++|.+.|+++.+..|.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455566666677777776666666554
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.35 E-value=0.03 Score=51.91 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH----------
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF---------- 326 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 326 (504)
+...+...+.+...+.-|.++|..|-+. ..+++.....++|++|..+-+...+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3334444444455555555666555332 23445555566666666655554432 12211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 327 -TFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 327 -~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
-|...-++|.+.|+-.+|..+++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223455666777777777776654
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.33 E-value=0.0016 Score=42.85 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=35.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
..+.+.++++.|.++++.+...+ |.++..+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44566666666666666666654 445555666666666666666666666666655
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.047 Score=41.62 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC 301 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (504)
........+...|++++|..+|..+.-.++. +..-+..|..++-..+++++|+..|......+. -|+..+-....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHH
Confidence 3455566667778888888888777766544 566666777777777888888887776655443 25555566667777
Q ss_pred cCCchHHHHHHHHHHHH
Q 048258 302 KDAEVHKTRELLVMLLE 318 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~ 318 (504)
..|+.+.|...|.....
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77888888887777766
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.089 Score=43.18 Aligned_cols=132 Identities=8% Similarity=-0.003 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHH-----HH
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCN-----TL 156 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 156 (504)
..+.++..+.-.|++.-...++.+..+.+.+.++.....+.+.-.+.||.+.|...|+++.+.....+...++ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666677788888888888877666677777888888888888888888888776543322322222 23
Q ss_pred HHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 157 LYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
...+.-.+++.+|...+.++...... +....|.-.-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455566777777777776654322 3333344344444556677777777777665
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=97.20 E-value=0.013 Score=44.58 Aligned_cols=90 Identities=13% Similarity=-0.088 Sum_probs=59.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH 132 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (504)
.-+...|++++|..+|.-+...+ .-|..-|..|..++-..+++++|+..|......+. -|+........++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33456677777777777776654 23555566666666667777777777776665542 35555666667777777777
Q ss_pred HHHHHHHHHHhc
Q 048258 133 KAFELLIRFMER 144 (504)
Q Consensus 133 ~a~~~~~~~~~~ 144 (504)
.|...|+.+...
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 777777777664
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.14 E-value=0.17 Score=44.94 Aligned_cols=186 Identities=17% Similarity=0.083 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHh---cCCHH
Q 048258 272 DRATEICREMRDRDIAP---NLVTFNTLISGHCKDAEVHKTRELLVMLLECG---FKPDKFTFNSMIDCLCR---AHRFE 342 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~ 342 (504)
++..+.+..+...=..| +..+...++-.|....+++...++.+.+.... +.-...+-.....++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34444445554431122 33344455556888899999999999887651 11223333344556666 88999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-H-
Q 048258 343 DALDCLSEMVEWGVPPNTITYNILIRSLCA---------IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNK-I- 411 (504)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~- 411 (504)
+|+.++..+......+++.+|..+...|-. ....++|+..|.+.-+. .|+...=-.++..+...|. +
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 999999986665567788888888877632 12356677777766554 3554322222222233332 2
Q ss_pred --HHHHHHH---HH-HHhCCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 412 --EKAEKAF---FS-MLTLGLRPDNF---SYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 412 --~~a~~~~---~~-~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
.+..++- .. +.+.|...... .+.+++.++.-.|++++|.+..++|...
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2233332 11 11233222222 2346677777788888888888888765
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0044 Score=40.74 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=36.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..|.+.++++.|+++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566667777777777766654 335556666666666667777777777766665
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.08 E-value=0.25 Score=45.85 Aligned_cols=410 Identities=11% Similarity=0.015 Sum_probs=222.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY-TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
.+...|..++.---.....+.+..++..+... -|... -|......=.+.|..+.+.++|++.... ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 44455666665444444556777777777754 34433 3333444345678899999999998864 45555666666
Q ss_pred HHHHH-hcCChHHHHHHHHHHHhcCC--CcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc-
Q 048258 122 VHGVF-RCLDPHKAFELLIRFMEREP--LTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT- 197 (504)
Q Consensus 122 ~~~~~-~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 197 (504)
+..+. ..|+.+.....|+.....-. -.....|...+..-..++++.....+++++++.. ...++.....|.+
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 55444 45788888888888776422 1245678888888888889999999999988742 2222222222211
Q ss_pred --c------CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH-HHHHHHHhCCCCCCHHHHHHH-------
Q 048258 198 --G------LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD-RYLNHVFKDRLVSNVNSYNMV------- 261 (504)
Q Consensus 198 --~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l------- 261 (504)
. ...+++.++-...... ......+...+-. ...+.+-..... -....+.+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~~-l~~~~~~l~~~~~~~ 261 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSKS-LTEEKTILKRIVSIH 261 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccch-hhHHHHHHHHHHHHH
Confidence 1 1122222222211110 0000000111100 001111100000 00011111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CC----CChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 048258 262 IDCFCKVNMMDRATEICREMRDRD---IA----PNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDC 334 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (504)
-..+...-........|+.-.... ++ ++..+|..-+..-...|+.+.+.-+++++.--= ..=...|-..+.-
T Consensus 262 ~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~ 340 (577)
T KOG1258|consen 262 EKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARW 340 (577)
T ss_pred HHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHH
Confidence 112222223333333444433331 22 245677888888888999999999998875310 1112334444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCCHHH
Q 048258 335 LCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY-TFNALIQSFCRMNKIEK 413 (504)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 413 (504)
....|+.+-|..++....+...+..+.+--.-....-..|++..|..+++.+.+.- |+.. .-..-+..-.+.|..+.
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~ 418 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLED 418 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhh
Confidence 55569999888888877765444333332222233345789999999999998863 4433 22233444567788888
Q ss_pred HH---HHHHHHHhCCCCCCcccHHHHHHH-----HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 414 AE---KAFFSMLTLGLRPDNFSYSALIKA-----LIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 414 a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
+. .++....+. .-+..+...+.-- +.-.++.+.|..++.++.+. ++++-..|..+++.....+
T Consensus 419 ~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 419 ANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 77 333333332 2232333333222 33467889999999999986 4566667777776665544
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.03 E-value=0.007 Score=46.52 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=52.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEATV 118 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 118 (504)
..+...++..+...|++++|+.+.+.+.... +.|...|..+|.+|...|+...|.+.|+.+.+ .|+.|++.+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3456677778888899999999999988775 55788889999999999999999998887753 4788877654
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.97 E-value=0.01 Score=45.55 Aligned_cols=124 Identities=12% Similarity=0.078 Sum_probs=77.7
Q ss_pred hhhHHHHH---HHHHhcCCHHHHHHHHHHhhhC--C-CCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCcHHh
Q 048258 10 TRLYNAVI---DALVKSNSIDLAYLKFQQMSVD--Q-CKPDRFTYNILIHGICRIGVV-DEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 10 ~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~ 82 (504)
...|..++ ......++.+.+...++++... | +-++... ..| ......++... ..+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-----------~~W~~~~r~~l~~~~-------~~~ 64 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-----------EEWVEPERERLRELY-------LDA 64 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-----------STTHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-----------cHHHHHHHHHHHHHH-------HHH
Confidence 34455553 3345678899999988888765 2 1122111 111 11222222222 235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcchhH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-----REPLTQKLV 152 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 152 (504)
...++..+...|++++|...++.+.... +.+...+..++.++...|+...|.+.|+++.. .|..|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 6667788889999999999999999885 35778999999999999999999999988764 255555443
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.89 E-value=0.26 Score=43.08 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=109.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC-CCccHH--HHHHHHHHHH---hcCC
Q 048258 267 KVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG-FKPDKF--TFNSMIDCLC---RAHR 340 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~ 340 (504)
+.|..+.|..+-+..-..-.. -...+...+...+..|+|+.|+++.+.-.... +.++.. .-..|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 445555555555444433211 23445555555555555555555555443221 112211 1111221111 1234
Q ss_pred HHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 048258 341 FEDALDCLSEMVEWGVPPNTIT-YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 419 (504)
...|...-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+ .+..-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCC--cHHHHHH
Confidence 55555555555543 344332 223345667777777777777777765 344333322 22345554 2222222
Q ss_pred HHHhC-CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 048258 420 SMLTL-GLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQ-GRFEEAHDIVKTSKERG 495 (504)
Q Consensus 420 ~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 495 (504)
+..+. .++|| .+....+..+....|++..|..--+.... ..|....|-.+.+.-... |+-.+++.++.+..+.-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 22211 13343 44455566666777777777776666655 366677776666655444 77777777777776653
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.47 Score=45.94 Aligned_cols=151 Identities=19% Similarity=0.180 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD--RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
....-+..+.+...++.|+.+-..-. ..++ ..........+.+.|++++|...|-+.... +.|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 45566778888888888888755432 1222 122333445556789999998887776643 2322 24555
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
|....+..+....++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 66666777777788888887764 44455677888888888777666554433 1110 11123344555555555555
Q ss_pred HHHHHH
Q 048258 170 AAILRK 175 (504)
Q Consensus 170 ~~~~~~ 175 (504)
.-+-.+
T Consensus 483 ~~LA~k 488 (933)
T KOG2114|consen 483 ELLATK 488 (933)
T ss_pred HHHHHH
Confidence 544433
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.84 E-value=0.21 Score=41.23 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=48.0
Q ss_pred HHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 193 TCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.+++++|....++..+..+......|...|.+++
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 33455677777777777776552 233456677777778888888888888887777665544455555555554
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.80 E-value=0.34 Score=43.07 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=18.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 359 NTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+.-.+..++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3334455556666666666666666666654
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.77 E-value=0.0026 Score=42.51 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCC---C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN--GCNP---D-SYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+++.+..+|...|++++|+..+++..+. ...+ + ..++..++.++...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666666666666532 0111 1 33566667777777777777777776654
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.028 Score=49.14 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY-TSNLILETL 475 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 475 (504)
+++.+..++.+.+++..|++.-++.++.+ ++|...+-.-..+|...|+++.|+..|+++.+. .|+.. +-..++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 45566667777777777777777777664 445555555667777777777777777777773 55433 333444433
Q ss_pred HhcCCH-HHHHHHHHHHHHc
Q 048258 476 VQQGRF-EEAHDIVKTSKER 494 (504)
Q Consensus 476 ~~~g~~-~~a~~~~~~~~~~ 494 (504)
.+..++ +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 333333 3346666666543
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.74 E-value=0.0047 Score=41.30 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=11.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
++..+..++...|++++|++++++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444444444443
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.71 E-value=0.043 Score=40.34 Aligned_cols=51 Identities=8% Similarity=0.203 Sum_probs=29.6
Q ss_pred CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 048258 76 YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER-NVCPNEATVRSLVHGVF 126 (504)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 126 (504)
..|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+....
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666666543 44444555555555443
No 225
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.26 Score=40.09 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.|..-..+|...+++++|...+.+..+- ...| ..+-.... .+++|.-+.+++.+.+ --...+......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnn-rslfhAAK------ayEqaamLake~~kls--Evvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-RSLFHAAK------AYEQAAMLAKELSKLS--EVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-ccHHHHHH------HHHHHHHHHHHHHHhH--HHHHHHHHHHHHHH
Confidence 3444555666666777777666665532 1212 22222222 2344444555544321 11123344445566
Q ss_pred hcCChHHHHHHHHHH
Q 048258 127 RCLDPHKAFELLIRF 141 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~ 141 (504)
.+|.++.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666555555443
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.67 E-value=0.58 Score=43.96 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC---------CHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS---------NVN 256 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~ 256 (504)
++...+...+.+...+..|-++|..+-+ ...+++.+...+++.+|..+.+...+.-... ...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 3344444444444555555555554432 1234445555566666655544433221100 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
-|...-.+|.+.|+-.+|..+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222334566667777777777776543
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.43 Score=41.92 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
+..+.-+...|+...|.++-.+.. -|+...|-.-+.+++..++|++-.++... +-.+.-|...+.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444444455555444444332 24444555555555555555544443211 11234455555555555
Q ss_pred CChhHHHHHHHH
Q 048258 444 GRFDEAKQTFLS 455 (504)
Q Consensus 444 g~~~~a~~~~~~ 455 (504)
|...+|..++.+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555554444
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.57 E-value=0.09 Score=39.13 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQC--KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..+-.-.....+.|+++.|++.|+.+..... +-...+...++.+|.+.++++.|+..+++..+.....-...|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3344556677788999999999998887631 23455667788888899999999999998888753322345666666
Q ss_pred HHHhc
Q 048258 89 GFCNA 93 (504)
Q Consensus 89 ~~~~~ 93 (504)
+++..
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 65543
No 229
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.54 E-value=0.49 Score=41.58 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+|..+...-...|+.+-|..+++. .|+..-- +..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 456666777777777777776543 4444322 3344556666666 44555554 3343 3555544
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=96.53 E-value=0.57 Score=42.55 Aligned_cols=85 Identities=12% Similarity=-0.007 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 048258 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN-EATVRSLVHGVFRCLDPHKAFELLI 139 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 139 (504)
..+|.++.++..+.+ +.|+.+...+..+..-.++++.+...|++....+ || ..++........-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666665 4466666666666666666777777777776653 33 3345555555566677777777777
Q ss_pred HHHhcCCCc
Q 048258 140 RFMEREPLT 148 (504)
Q Consensus 140 ~~~~~~~~~ 148 (504)
+..+..|..
T Consensus 397 ~alrLsP~~ 405 (458)
T PRK11906 397 KSLQLEPRR 405 (458)
T ss_pred HHhccCchh
Confidence 766665543
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.072 Score=46.76 Aligned_cols=92 Identities=11% Similarity=-0.036 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC-----CC---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQ-----CK---------PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
...+.+.|++..|...|+++...- .+ .-..+++.+..++.+.+.+..|++..+..+..+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 346788899999999988865420 01 112234444555556666666666666666554 445555
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
...=.+++...|+++.|...|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555556666666666666666666654
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.43 E-value=0.076 Score=39.07 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=69.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhh---------------hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMS---------------VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
|..++.++|.++++.|+.+....+.+..= .....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56788999999999999999999987652 112458899999999999999999999999999876
Q ss_pred C-CCCCcHHhHHHHHHHHHh
Q 048258 74 L-GYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 74 ~-~~~~~~~~~~~l~~~~~~ 92 (504)
. +++.+..+|..|++-...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 5 566678889998876543
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.51 Score=39.85 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=60.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
......|+..+|...|.......+. +...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777777766555 244445566677777777777777776654321111111112223333333333
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
+...+-...-.. +.|...-..+...+...|+.+.|.+.+-.++
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333332221 2244444445555555555555554444433
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.43 Score=38.93 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.|..-..+|-...+++.|...+.+..+.. ..+...|+. .+.++.|.-+.+++.+. +.-+..|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34444555555666666666655555321 222222221 23456666666666654 223445677778888
Q ss_pred hcCChhhHHHHHHHHHH
Q 048258 92 NAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~ 108 (504)
..|..+.|-..+++.-+
T Consensus 103 E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK 119 (308)
T ss_pred HhCCcchHHHHHHHHHH
Confidence 88988888888887754
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.36 Score=45.25 Aligned_cols=178 Identities=17% Similarity=0.097 Sum_probs=110.1
Q ss_pred HHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH------hHHHHHHHHHh----cCChhhH
Q 048258 30 YLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY------TYTILIDGFCN----AKRVAEV 99 (504)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a 99 (504)
.-+|..+...= || .+..++....-.|+-+.+++++.+..+.+--..+. .|...+..++. ....+.|
T Consensus 177 ~G~f~L~lSlL-Pp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLL-PP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhC-CH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 44555555321 33 45667777777888888888888876643111111 23333333332 3467888
Q ss_pred HHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhcC---CCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 100 FRVLEIMKERNVCPNEATVRS-LVHGVFRCLDPHKAFELLIRFMERE---PLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
.++++.+.++ .|+...|.. -.+.+...|++++|.+.|++..... +......+-.+...+.-..++++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888876 566655433 3456677889999999998765422 222334455566778888899999999998
Q ss_pred HhhCCCCCChhhHHHHH-HHHHccCCh-------hhHHHHHHHHHhc
Q 048258 176 MGDRGYLPESSTFDYTV-TCLVTGLDL-------NETCGILDTFIKR 214 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~~ 214 (504)
+.+.+-- +..+|.-+. .++...++. ++|.+++.++...
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 8875322 333333333 334456666 7888888876643
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.35 E-value=0.084 Score=47.52 Aligned_cols=66 Identities=8% Similarity=-0.131 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR---FTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
.++..|+.+..+|.+.|++++|+..|++..+.+ +.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666553 2222 23556666666666666666666666653
No 237
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.1 Score=43.13 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
.+--+.-+...|+..+|.++-.+.. -||-..|-.=+.+++..+++++-+++-+... .+.-|...+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3344444455555555555554443 2444455444555555555555444422211 13345555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 443 SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
.|+.++|.+++.+.... . ....+|.+.|++.+|.+..
T Consensus 757 ~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 55555555555443221 0 3344555555555554443
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.34 E-value=0.39 Score=45.07 Aligned_cols=164 Identities=11% Similarity=0.016 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhCC-CCCCh-----hhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHH
Q 048258 152 VCNTLLYRLSNNSMASEAAAILRKMGDRG-YLPES-----STFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFS 221 (504)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 221 (504)
....++....-.|+-+.+++.+....+.+ +.... -.|...+..++. ..+.+.+.++++.+.+.- |.+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~l 268 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSAL 268 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHH
Confidence 34456666666777777777776654422 22111 123333333322 345677777777777762 33333
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDR---LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLIS 298 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (504)
-...-.+.+...|+.++|++.++...... .......+--++-++.-.++|++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 44445566777788888888887655321 12233344456666777788888888888887753 223334443333
Q ss_pred -HHhcCCch-------HHHHHHHHHHH
Q 048258 299 -GHCKDAEV-------HKTRELLVMLL 317 (504)
Q Consensus 299 -~~~~~~~~-------~~a~~~~~~~~ 317 (504)
++...++. ++|.+++.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 23345555 77777777664
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.33 E-value=0.056 Score=48.62 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=66.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc
Q 048258 357 PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI----YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS 432 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 432 (504)
+.+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 445667888888999999999999999998875 4553 358888888999999999999999888752 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhcCC
Q 048258 433 YSALIK--ALIKSGRFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 433 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~ 461 (504)
|..+.. .+....+..+..++++.+...|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 01112233456666666666653
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.32 E-value=0.75 Score=41.26 Aligned_cols=131 Identities=15% Similarity=0.226 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHH
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADR-ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSY-SALI 437 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 437 (504)
..+|...+..-.+...++.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777788888999999999999988 6788889999998665 78899999999876664 4565554 5677
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 438 KALIKSGRFDEAKQTFLSMEQNGCNPD--SYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.-+...++-+.|..+|+..+.+ +..+ ..+|..++.--..-|+...+..+-+++...
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 8888999999999999987764 3444 568999999888999999999888888764
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.28 E-value=0.26 Score=45.47 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=62.8
Q ss_pred HhcCCHHHHHHHHH--HHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 048258 56 CRIGVVDEALRLVK--QMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK 133 (504)
Q Consensus 56 ~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (504)
.-.++++.+.++.+ ++... ......+.+++.+.+.|..+.|+++-..-.. -.....+.|+.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~---i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPN---IPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhccc---CChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 34566666555554 11110 1133455666666666666666665433221 2334456666666
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh
Q 048258 134 AFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK 213 (504)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (504)
|.++.++. .+...|..|.....++|+++-|++.|.+..+ +..++-.|...|+.+...++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66554322 2445666666666666666666666665542 34445555556665555555555544
Q ss_pred cC
Q 048258 214 RG 215 (504)
Q Consensus 214 ~~ 215 (504)
.|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.58 Score=39.53 Aligned_cols=145 Identities=16% Similarity=0.104 Sum_probs=79.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV 306 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (504)
.......|++.+|...|.......+. +...-..++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34455667777777777777766554 44555667777777777777777777765542221222222233444444444
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC
Q 048258 307 HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPNTITYNILIRSLCAIG 374 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 374 (504)
.+...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. ..|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444444332 22555555566666677777777766666554311 123334445555554444
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.20 E-value=0.019 Score=33.01 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNI 50 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 50 (504)
+|..+.+.|.+.|++++|+++|+++.+.. +.|+..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 44455555555666666666665555553 334444443
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.18 E-value=0.31 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 434 SALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+..+..+...|+-++-.+++..+... -.+++.....+..+|.+.|+..++.++++++=++|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444455555555555544432 13444455555555555555555555555554444
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.24 Score=41.25 Aligned_cols=90 Identities=20% Similarity=0.192 Sum_probs=54.6
Q ss_pred HHccCChhhHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 048258 195 LVTGLDLNETCGILDTFIKRGV--KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 270 (504)
+.+.|++..|...|...++... .-....+..|..+++..|++++|..+|..+.+.-+. .-+..+-.+..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3445556777766666666531 223455666677777777777777777666654432 123455556666666777
Q ss_pred HHHHHHHHHHHHhC
Q 048258 271 MDRATEICREMRDR 284 (504)
Q Consensus 271 ~~~a~~~~~~~~~~ 284 (504)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766655
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.24 Score=42.33 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=106.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCh
Q 048258 55 ICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER---NVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 55 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
....|+..+|-..++++.+. ++.|..++.-.=.+|...|+...-...++++... +++....+...+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44567788887888888765 4667777777777888888888888888887654 2222233444555666778888
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC---CChhhHHHHHHHHHccCChhhHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYL---PESSTFDYTVTCLVTGLDLNETCGIL 208 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 208 (504)
++|.+.-++..+.++. +.....+..+.+-.+|++.++.+...+-...--. .-.+-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888888777654 5666667777788888888888877665432111 12233444455666778889999888
Q ss_pred HHHH
Q 048258 209 DTFI 212 (504)
Q Consensus 209 ~~~~ 212 (504)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7544
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.16 Score=42.31 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-ChhhHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGY--APNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC-P-NEATVRSLV 122 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 122 (504)
.|+.-+.. .+.|++..|...|....+... .-....+..|..++...|++++|..+|..+.+.-.. | -+..+.-+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35544433 344556666666666655421 011223444556666666666666666666554111 1 123444555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.+..+.|+.++|...|+++.+..|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 5555666666666666666665544
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.04 E-value=0.3 Score=36.42 Aligned_cols=80 Identities=14% Similarity=0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC 266 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 266 (504)
..-.....+.|++++|.+.|+.+...- .+-...+...++.++.+.+++++|...+++.++..|......|...+.+++
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 333445556777777777777777662 123456677788888888888888888888888776544455555555544
Q ss_pred hc
Q 048258 267 KV 268 (504)
Q Consensus 267 ~~ 268 (504)
..
T Consensus 94 ~~ 95 (142)
T PF13512_consen 94 YY 95 (142)
T ss_pred HH
Confidence 43
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.01 E-value=0.17 Score=36.61 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=64.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcC
Q 048258 368 RSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDN---FSYSALIKALIKSG 444 (504)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 444 (504)
.+.+..|+.+.|++.|.+.... .+.....||.-..++.-.|+.++|++-+++.++..-..+. ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888887765 3456778888888888888888888888888774211121 12333344566778
Q ss_pred ChhHHHHHHHHHHhcCC
Q 048258 445 RFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~ 461 (504)
+-+.|+.-|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888888877763
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.87 E-value=1.1 Score=38.96 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFE---DALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+++.+.+.+|...- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45667777787776644 556666666543 23234555566777777888999999999998762 22334455444
Q ss_pred HHH---HccCCHHHHHHHHHHHHhCCCCCCcc-cHHH-HHH---HHHhcCC------hhHHHHHHHHHHh-cCCCCChhh
Q 048258 403 QSF---CRMNKIEKAEKAFFSMLTLGLRPDNF-SYSA-LIK---ALIKSGR------FDEAKQTFLSMEQ-NGCNPDSYT 467 (504)
Q Consensus 403 ~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~g~------~~~a~~~~~~~~~-~~~~~~~~~ 467 (504)
..+ .. .....|...+..++...+.|... .... ++. ...+.++ .+...+++..... .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 33456666666666544455443 1111 111 1122222 3333344443322 122223332
Q ss_pred ---HHHH----HHHHHhcCCHHHHHHHHHHHH
Q 048258 468 ---SNLI----LETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 468 ---~~~l----~~~~~~~g~~~~a~~~~~~~~ 492 (504)
...+ +..+.+.++|++|.++++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222 345677899999999998665
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=2.1 Score=41.81 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHH
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 416 (504)
++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+..+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~ 757 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYE 757 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHH
Confidence 334444444555555544444322 44455555555555554443333
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.71 E-value=0.6 Score=40.53 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=125.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH----HHhCC-CCCcHHhHHHHHHHHHh
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQ----MEGLG-YAPNVYTYTILIDGFCN 92 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 92 (504)
+....+.+.|+..|.+....- ...-..++..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778889998888776431 011233456677788888888776543222 11110 00112345555566655
Q ss_pred cCChhhHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcchhHHHHHHHHHhcC
Q 048258 93 AKRVAEVFRVLEIMKER-NVCP---NEATVRSLVHGVFRCLDPHKAFELLIRFMER-----EPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 163 (504)
..++.+++.+-..-... |..| -......+..++...+.++++++.|+....- ++.....++-.+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 56666666665554432 1111 1123445667777788888888888877653 2223445677777788888
Q ss_pred CChHHHHHHHHHHhh----CCCCCChh------hHHHHHHHHHccCChhhHHHHHHHHHhc----CCCc-cHHHHHHHHH
Q 048258 164 SMASEAAAILRKMGD----RGYLPESS------TFDYTVTCLVTGLDLNETCGILDTFIKR----GVKP-RFSTYLLLME 228 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~----~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 228 (504)
.+.++|.-+..+..+ -++. |.. ....+.-++...|.+.+|.+..++..+. |-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 888877766555432 1111 111 1222334455566666666665554432 3222 2233445556
Q ss_pred HHHhcCCcHHHHHHHHHHH
Q 048258 229 ALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~ 247 (504)
.|...|+.+.|..-|+++.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 6666677666666665554
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.63 E-value=0.7 Score=35.09 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..++..+.+.+.+.....+++.+.+.+ +.++...+.++..|++.+ .+...+.++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555566666666666665554 345555666666665442 2233333331 0 1122223344455555
Q ss_pred CChhhHHHHHHHH
Q 048258 94 KRVAEVFRVLEIM 106 (504)
Q Consensus 94 g~~~~a~~~~~~~ 106 (504)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.61 E-value=0.04 Score=31.66 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
++..+...|.+.|++++|+++|+++.+.. +-|...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 44555666666666666666666666553 234444433
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.56 E-value=0.27 Score=35.63 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHccCC
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY---TFNALIQSFCRMNK 410 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 410 (504)
+.+..|+.+.|++.|.+.+.. .+.....||.-..++.-.|+.++|++-+++..+..-.-+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567889999999999998876 35577889999999999999999999999888752222222 33333445677889
Q ss_pred HHHHHHHHHHHHhCC
Q 048258 411 IEKAEKAFFSMLTLG 425 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~ 425 (504)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998888876
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.56 E-value=0.41 Score=44.23 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=64.2
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
..+.++..+.+.|-.+.|+.+...- . .-.....+.|+.+.|.++.++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3455555555566666655544321 1 1122334556666655543332 24456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQ 451 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (504)
..|+++-|++.|++... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665442 3444445555666666555555555543 13344444445555555555
Q ss_pred HHH
Q 048258 452 TFL 454 (504)
Q Consensus 452 ~~~ 454 (504)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.53 E-value=0.2 Score=42.39 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=60.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEATV 118 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 118 (504)
-..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45667778888888888888888888888775 55777888888888888888888888877765 4677777766
Q ss_pred HHHHHH
Q 048258 119 RSLVHG 124 (504)
Q Consensus 119 ~~l~~~ 124 (504)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 665555
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.45 Score=40.78 Aligned_cols=154 Identities=8% Similarity=0.023 Sum_probs=111.0
Q ss_pred hcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCCH
Q 048258 301 CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY----NILIRSLCAIGDV 376 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 376 (504)
...|+..+|-..++++.+. .+.|...+...-.+|...|+.+.-...++++... ..++...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467788888888888775 4567777887788899999999988888888754 23344333 3444556688999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 377 ARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL---GLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
++|++.-++..+.+ +.|...-.++...+...|++.++.++..+-... +.-.-...|-...-.++..+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999988865 556777778888888899999999986554331 11111334555555677789999999999
Q ss_pred HHHH
Q 048258 454 LSME 457 (504)
Q Consensus 454 ~~~~ 457 (504)
++-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7655
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.85 Score=35.11 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=32.9
Q ss_pred HHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+...|.+++.....+.+...+.+.....-..|.-+-.+.|++..|...|.++...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 3445666666665655555554445555556666666667777777776666553
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=95.48 E-value=1.4 Score=40.16 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 420 (504)
.+|.+.-+...+.+ +.|+.....+..+....++++.|...|++.... .|| ...|........-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555543 335555555555555555566666666666554 233 33444444444555666666666666
Q ss_pred HHh
Q 048258 421 MLT 423 (504)
Q Consensus 421 ~~~ 423 (504)
..+
T Consensus 398 alr 400 (458)
T PRK11906 398 SLQ 400 (458)
T ss_pred Hhc
Confidence 555
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.39 E-value=0.25 Score=41.11 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc----------------CChhhHHH
Q 048258 43 PDRFTYNILIHGICR-----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA----------------KRVAEVFR 101 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~ 101 (504)
.|-.+|...+..+.. .+.++-....+..|.+-|+..|..+|+.|+..+=+- .+-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344445444444432 234444555555566666666666666665543211 23345677
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 048258 102 VLEIMKERNVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
++++|...|+-||..+-..++.++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 777777777777777777777777666543
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=2.8 Score=40.47 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
+.+--+.-+...|+..+|.++-.+.. -||...|-.=+.+++..+++++-+++-+... ++.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44455556677888888887777664 4688888888899999999888766544432 3555777888999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 407 RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 407 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
+.|+.++|.+++.+... +.-...+|.+.|++.+|.++.-+-
T Consensus 756 ~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 99999999998755432 115678899999999998875443
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.38 E-value=1.4 Score=36.98 Aligned_cols=221 Identities=18% Similarity=0.131 Sum_probs=97.2
Q ss_pred CCcHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCchHHHHH
Q 048258 234 GRDVEGDRYLNHVFKDRLVS-NVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAPNLVTFNTLISGHCKDAEVHKTRE 311 (504)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 311 (504)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444332221 2344445555555556666666555555431 112233444444445555555555555
Q ss_pred HHHHHHHCCCCccHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 312 LLVMLLECGFKPDKFTFNSMID-CLCRAHRFEDALDCLSEMVEWGV--PPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 555555432222 111111111 45555556666655555543211 01122222233334445555555555555554
Q ss_pred CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 389 DRISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 389 ~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.. .. ....+..+...+...++++.+...+...... .|+ ...+......+...+..+.+...+.+...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 31 11 2344444555555555555555555555543 222 22222333333344445555555555544
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.30 E-value=0.92 Score=34.43 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.++ ++..+.+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 3567777777788899999999988876 4677788899988887643 344444432 1 233444556667777
Q ss_pred cCChHHHHHHHHHH
Q 048258 128 CLDPHKAFELLIRF 141 (504)
Q Consensus 128 ~~~~~~a~~~~~~~ 141 (504)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 77776666666554
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.30 E-value=1.4 Score=36.56 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 265 FCKVNMMDRATEICREMRDRDI--APNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
-.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.++++.|....++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455566666666665554421 112233334444555566666666666555544
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=3.1 Score=40.40 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=69.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKP---DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
++.+.+.+.+++|...-+..... .| ....+...+..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56778889999998887765543 33 3556778888888999999999988888853 666777777766666
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
++... ++.-+.......++.+|..++..+..
T Consensus 437 ~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 65443 33333333333455667777666665
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.13 E-value=2.6 Score=38.70 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY-TFNALI 402 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 402 (504)
..-..+..++.+.|+.++|++.++++.+.... ........|+.++...+.+.++..++.+..+...+.+.. .|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33345666677889999999999999875322 233466788899999999999999998876543333332 555544
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.11 E-value=0.3 Score=40.73 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCcHHhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------CChHHHH
Q 048258 77 APNVYTYTILIDGFCN-----AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC----------------LDPHKAF 135 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 135 (504)
+.|-.+|...+..+.. .+.++=....+..|.+-|+..|..+|..|+..+-+. .+-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566666655543 245555666677777778888888888777664331 2334578
Q ss_pred HHHHHHHhcCCCcchhHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 048258 136 ELLIRFMEREPLTQKLVCNTLLYRLSNNSMA-SEAAAILRKM 176 (504)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 176 (504)
.++++|...|.-|+..+-..++.++.+.+.. .+..+.+-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888888887764 3334444444
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.07 E-value=4.7 Score=41.31 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
....++.++...|..+.|.++-+..
T Consensus 1186 E~~~Ll~~l~~~g~~eqa~~Lq~~f 1210 (1265)
T KOG1920|consen 1186 ELKRLLEVLVTFGMDEQARALQKAF 1210 (1265)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4456777777777777776654443
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.82 E-value=2.4 Score=36.75 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=10.4
Q ss_pred HHhcCChhHHHHHHHHH
Q 048258 440 LIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~ 456 (504)
+.+.+++++|.++|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44566666666666644
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.75 E-value=3.4 Score=38.04 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-chhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 116 ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
.+-..+..++.+.|+.++|.+.++++.+..|.. ...+...|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344456666667788888888888877665442 344666777778888888888887777644
No 272
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.60 E-value=1.7 Score=37.92 Aligned_cols=55 Identities=11% Similarity=-0.022 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRD-----IAPNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
+..++...+.++++++.|+...... .......+..+...|.+..|+++|.-...+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 4445555555555555555443321 111223445555555555555555544433
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.50 E-value=2.1 Score=34.51 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
.+|.-+...+...|+.++|..+|+......
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456666666777777777777776666543
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.37 E-value=2.2 Score=34.34 Aligned_cols=183 Identities=18% Similarity=0.087 Sum_probs=97.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 048258 264 CFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFED 343 (504)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (504)
.|-..|-+.-|..=|.+.....+. -+..||.+.--+...|+++.|.+.|+...+.++.-+-...|.=+. +.-.|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence 355566666666666666554322 346677777777778888888888888777654433333333332 334577777
Q ss_pred HHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 048258 344 ALDCLSEMVEWGVPPNTI--TYNILIRSLCAIGDVARSLRL-FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 344 a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 420 (504)
|.+-+...-+.+ +.|+. .|-.+.. ..-++.+|..- .++..+ .|..-|...+-.|. .|++. ...++++
T Consensus 152 Aq~d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS-~e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKIS-EETLMER 221 (297)
T ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-Hhhcc-HHHHHHH
Confidence 777777666653 22322 2222221 22355555443 333333 24344433333222 12221 1222333
Q ss_pred HHhCCCCCC-------cccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 421 MLTLGLRPD-------NFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 421 ~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..- -..+ ..+|-.+..-+...|+.++|..+|+-.+..
T Consensus 222 ~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 222 LKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3321 1111 345666777777888888888888877764
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.18 E-value=0.14 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
++..++..|.+.|++++|.+++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888553
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.15 E-value=0.79 Score=38.97 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcchhHHH
Q 048258 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-----REPLTQKLVCN 154 (504)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 154 (504)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.. .++.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4578888999999999999999999999875 34778999999999999999999999998876 36666666666
Q ss_pred HHHHH
Q 048258 155 TLLYR 159 (504)
Q Consensus 155 ~l~~~ 159 (504)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.12 E-value=1.2 Score=35.29 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPD--IYTFNALIQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 422 (504)
.+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544322222 1233444444455555555555544443
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.98 E-value=2.3 Score=33.06 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhh
Q 048258 66 RLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE 98 (504)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (504)
+++..+.+.+++|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444445555555555555655555555433
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=2.8 Score=33.24 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.....|.+++|...++.....+. .......-++++...|+.++|+.-|+...+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444444444444444333211 1222333344444444445554444444444
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.71 E-value=3.6 Score=34.38 Aligned_cols=117 Identities=21% Similarity=0.098 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHH
Q 048258 59 GVVDEALRLVKQMEGLGYA-PNVYTYTILIDGFCNAKRVAEVFRVLEIMKER-NVCPNEATVRSLVHGVFRCLDPHKAFE 136 (504)
Q Consensus 59 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (504)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555555443211 02344555555556666666666666655532 112233444445555555555666666
Q ss_pred HHHHHHhcCCCcchhHHHHHHH-HHhcCCChHHHHHHHHHH
Q 048258 137 LLIRFMEREPLTQKLVCNTLLY-RLSNNSMASEAAAILRKM 176 (504)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~ 176 (504)
.+.......+.. ......... .+...|+++.+...+.+.
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666555543332 111111111 445555555555555555
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.70 E-value=1.8 Score=34.36 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..+..+...|.+.|+.+.|++.|.++......+. ...+..+|+.....+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4466677777777777777777777766533322 334556667777777777777776666543
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.68 E-value=0.11 Score=27.81 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=18.3
Q ss_pred HHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048258 34 QQMSVDQCKPDRFTYNILIHGICRIGVVDEAL 65 (504)
Q Consensus 34 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 65 (504)
++.++.+ |.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 456666666666666666666664
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.66 E-value=0.18 Score=27.31 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048258 48 YNILIHGICRIGVVDEALRLVKQ 70 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~ 70 (504)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=2.7 Score=32.49 Aligned_cols=122 Identities=8% Similarity=0.009 Sum_probs=51.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-H--HHHHHHHHhcCChH
Q 048258 57 RIGVVDEALRLVKQMEGLGYAPNVY-TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT-V--RSLVHGVFRCLDPH 132 (504)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~--~~l~~~~~~~~~~~ 132 (504)
+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|...- . ..-...+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544321111 111112223344555555555555544322222210 0 00111233445555
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 133 KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
......+.+...+.+.....-..|..+-.+.|++..|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555554444443333333444444455555555555555555544
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.46 E-value=2.2 Score=31.22 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=24.7
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
...+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33344444444444444444444432 23444444444555555555555544444444443
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.93 E-value=0.19 Score=26.82 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=16.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048258 245 HVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (504)
+.++..|. +..+|+.+...+...|++++|+
T Consensus 4 kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 33444433 5566666666666666666554
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.83 E-value=13 Score=38.37 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=58.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHccCC
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY--TFNALIQSFCRMNK 410 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 410 (504)
..+.+...+++|.-.|+..-+. .-.+.+|..+|+|.+|..+..++... .+.. +-..|+..+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHccc
Confidence 3334455555555555544221 22455666667777776666655431 1211 22456666677777
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 411 IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 411 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
+-+|-++..+.... | ...+..|++...+++|..+.....
T Consensus 1015 h~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1015 HYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred chhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77777776665541 1 234455666677777777665544
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.67 E-value=1 Score=30.71 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
+.=++.+-++.+....+.|++....+.+.+|.+.+++..|+++++-...
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555556666666667777777777777777777777777776653
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.55 E-value=6.7 Score=34.25 Aligned_cols=127 Identities=9% Similarity=0.222 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhc--CC----chHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCC---
Q 048258 273 RATEICREMRDRDIAPNLVTFNTLISGHCK--DA----EVHKTRELLVMLLECGF---KPDKFTFNSMIDCLCRAHR--- 340 (504)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--- 340 (504)
+.+.+++.+.+.|+.-+..++-+....... .. ....+..+|+.|.+..+ .++-.++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555566666555444444332222211 11 23455556666655432 1223333333322 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 341 -FEDALDCLSEMVEWGVPPNT--ITYNILIRSLCAIGD--VARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 341 -~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.+.+..+|+.+.+.|+..+. ...+.++..+....+ ..++.++++.+.+.++++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23444555555554443222 222222222211111 23455555555555555555544443
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.44 E-value=8.1 Score=34.96 Aligned_cols=181 Identities=15% Similarity=0.079 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCcHHhHHHHHHHHH
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY----APNVYTYTILIDGFC 91 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~ 91 (504)
..++.-+.|+|+...+........ .++...+..+... ..++++++....+.+...-. ......|......+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356778889999966665555533 3455555555544 78999988888887754310 001122222222222
Q ss_pred hc---CChhhHHHHHHHH--------------HHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh--cCCCcch
Q 048258 92 NA---KRVAEVFRVLEIM--------------KER--NVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME--REPLTQK 150 (504)
Q Consensus 92 ~~---g~~~~a~~~~~~~--------------~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 150 (504)
+. .+++++.++.... ..+ +..++..++..++.. -.-+.. ..+....
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~-------------R~~~l~~~~~~~~~~ 146 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSL-------------RRLVLSLILLPEELA 146 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHH-------------HHHHHhcccchhHHH
Confidence 22 2333333333111 000 112222222222211 111111 1123345
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHccCChhhHHHHHHHHHh
Q 048258 151 LVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP---ESSTFDYTVTCLVTGLDLNETCGILDTFIK 213 (504)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (504)
.+|..++..+.+.|.++.|...+..+...+..+ .+.....-++..-..|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577778888888888888888888877643222 334455556667777888888888877776
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.40 E-value=7 Score=34.13 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHhcCCc--
Q 048258 237 VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK--V----NMMDRATEICREMRDRDI---APNLVTFNTLISGHCKDAE-- 305 (504)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 305 (504)
.+...+++.+.+.+...+..+|-+....... . ....++..+|+.|++..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445567777777777666555443322222 1 235678899999988753 2344555555543 3333
Q ss_pred --hHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048258 306 --VHKTRELLVMLLECGFKPDK--FTFNSMIDCLCRAHR--FEDALDCLSEMVEWGVPPNTITYNILIRSL 370 (504)
Q Consensus 306 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (504)
.+.+..+|+.+.+.|+..+. .....++..+....+ ..++..+++.+.+.++++....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35667777888776765432 344444443332222 458889999999999988887776555443
No 292
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.20 E-value=9.6 Score=35.23 Aligned_cols=66 Identities=11% Similarity=-0.044 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHhC
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHG-ICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 74 (504)
.|+..|...+..+-+.+.+.+.-.+|.+|...+ +.++..|-.-... |-.+-+++.|..+|....+.
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 355556555555555555666666666655544 3333333332222 22223355555555555544
No 293
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.09 E-value=0.98 Score=31.16 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666666666666543
No 294
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.03 E-value=2.9 Score=28.96 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 13 YNAVIDALVKSNS--IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 13 ~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+..--..+....+ .-+..+-+..+...++-|.+.+..+.+++|.+.+++..|+++|+-++.+
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333344444333 2245555555555555666666666666666666666666666666543
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.90 E-value=4.9 Score=31.29 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=60.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 346 DCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
++++.+.+.+++|+...+..++..+.+.|.+..-..+ ...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444444555666666666666666666654433332 22333333333322221111 1222333333333321
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+ ...+..++..+...|++-+|.++.+..... +......++.+-.+.++..--..+++-+.+.
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 012445555666666666666666554221 1112233455555555555544455444443
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.85 E-value=0.6 Score=24.61 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.+..++.++...|++++|++.++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666654
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.70 E-value=4.9 Score=30.87 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=6.9
Q ss_pred hcCCChHHHHHHHHHH
Q 048258 161 SNNSMASEAAAILRKM 176 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~ 176 (504)
...|++.+|..+|+++
T Consensus 55 i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 55 IVRGDWDDALRLLREL 70 (160)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 3344444444444443
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.63 E-value=5 Score=30.83 Aligned_cols=53 Identities=21% Similarity=0.077 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRF-TYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
-.+.++.+++..+++-+.-.. |... .-..-...+...|+|.+|+.+|+++...
T Consensus 20 al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344556666666666555442 2222 2122223345566666666666666554
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=15 Score=36.06 Aligned_cols=102 Identities=17% Similarity=0.029 Sum_probs=67.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLGYAP---NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
+..+.+.+.+++|+.+.+..... .| -.......|..+...|++++|-...-.|... +..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 66777889999999988776543 33 3446777788888889999999998888754 455555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 129 LDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
++...... -+....+.....+|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 55433222 22223333566678777777766
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.34 E-value=0.74 Score=24.32 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+|..++.++...|++++|...++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555666666666666666665553
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.27 E-value=2.5 Score=33.56 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=67.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHH
Q 048258 367 IRSLCAIGDVARSLRLFQKMQADRISPD-----IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKAL 440 (504)
Q Consensus 367 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 440 (504)
..-+...|++++|..-|..+++. +++. ...|..-..++.+.+.++.|++--.+.++.+ |+ ...+..-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 34567889999999999999886 2332 2344444566778899999999888888854 32 22333345567
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChh
Q 048258 441 IKSGRFDEAKQTFLSMEQNGCNPDSY 466 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 466 (504)
-+...+++|+.-|+++.+. .|...
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--CcchH
Confidence 8888999999999999985 45443
No 302
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.06 E-value=31 Score=38.92 Aligned_cols=323 Identities=11% Similarity=0.024 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQC-KPDRFTYNILI-HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
..+.++-.+++.+.+|+..+++-..... +-....+-.++ ..|...+++|....+...-.. .|+ .+.- |....
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~q-il~~e 1460 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQQ-ILEHE 1460 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHHH-HHHHH
Confidence 3667788899999999999998421110 11223333444 488899999988887775222 222 2333 33456
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHH
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
..|++..|...|+.+.+.+. +....+..++......|.+....-..+.......+.....++.=+.+-.+.++++....
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 78999999999999998742 33556777777777778888777766665554333222223333344567777777666
Q ss_pred HHHHHhhCCCCCChhhHHHH--HHHHHcc--CChhhHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHhcCCcHH
Q 048258 172 ILRKMGDRGYLPESSTFDYT--VTCLVTG--LDLNETCGILDTFIKRGVKP---------RFSTYLLLMEALYKAGRDVE 238 (504)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 238 (504)
.+. .. +..+|... .....+. .|.-.-.+.++.+.+.-+.| -...|..++..+.-..-..
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~- 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN- 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH-
Confidence 655 11 23333222 2222222 22222222333222221111 0122333333222111100
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhC----CCC-CChhhHHHHHHHHhcCCchHHHHH
Q 048258 239 GDRYLNHVF-KDRLVSNVNSYNMVIDCFCKVNMMDRATEICRE-MRDR----DIA-PNLVTFNTLISGHCKDAEVHKTRE 311 (504)
Q Consensus 239 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 311 (504)
-.+...... ......+..-|..-+..-....+..+-+--+++ +... +.. --..+|....+.....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 011111110 000111111122222111111111111111111 1111 111 124567777788888999999988
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 312 LLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
.+-...+.+ -+..+-..++.....|+...|+.++++..+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 877776654 2344556677788899999999999988854
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.98 E-value=13 Score=34.49 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=105.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+.|.....+++..+..+..+.-...+..+|...| .+-..|..++++|... ..++-..+++++.+..+ +..+...-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 3455556667777777777777778888887764 4666777888888777 45777778888777654 34444433
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHhcCCChHHHHHHHHHHhhC-CCCCChhhHHHHHHHH
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPL-----TQKLVCNTLLYRLSNNSMASEAAAILRKMGDR-GYLPESSTFDYTVTCL 195 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 195 (504)
+..+...++...+...|.++..+-.+ .-..+|..+... -..+.+..+.+..++... |..--...+..+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33444447777777777776654322 112244444421 133455555555555432 2222233444445666
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEA 229 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (504)
....++.+|++++..+.+.. ..|..+-..++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 66777777777777777664 3344444444443
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.53 E-value=0.87 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
|..+..+|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=3.3 Score=35.45 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=28.2
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
++++++.++..-.+-|+-||..++..++..+.+.+++.+|.++...++..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44455555555555555566666666666666666666555555554443
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=5.6 Score=34.17 Aligned_cols=103 Identities=15% Similarity=0.285 Sum_probs=65.5
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 355 GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD---RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
|.+.+..+...++..-....+++.++..+-++... ...|+... ..+++. +..-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 33444555555555555566777777777666543 11122111 122332 33456678888877777888888888
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+++.+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.95 E-value=1 Score=23.65 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFME 143 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~ 143 (504)
.+...+...|++++|.+.|++...
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.85 E-value=0.94 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 466 YTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.++..++.+|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667788888888888888888888765
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.72 E-value=4.5 Score=32.41 Aligned_cols=75 Identities=19% Similarity=0.087 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChHHHH
Q 048258 60 VVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER---NVCPNEATVRSLVHGVFRCLDPHKAF 135 (504)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 135 (504)
.-+.|++.|-.+...+.--++.....|...|. ..+.++++.++-...+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45678888999988875556666666666554 67889999999888764 23678999999999999999999885
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.47 E-value=22 Score=34.64 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCcHHhHHHHHHHHHhc
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHG-----ICRIGVVDEALRLVKQMEG-------LGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 93 (504)
...|...++...+.| +......+... +....+.+.|+.+|+.+.. .| ++.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467788888877765 33333322222 3345678888888888766 44 233455566666653
Q ss_pred C-----ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhcCC
Q 048258 94 K-----RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR-CLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 94 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~ 146 (504)
. +.+.|..++....+.|. |+.......+..... ..+...|.++|......|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 2 45667777777777653 333332222221111 1345677777777666543
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=13 Score=35.30 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEV 99 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 99 (504)
..-.|+++.|..++..+.+ ..-+.+.+.+-++|..++|+++ .+|...- .....+.|+++.|
T Consensus 596 ~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA 656 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIA 656 (794)
T ss_pred HhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHH
Confidence 3446777777776655542 2335566667777777777654 2232221 1233566788877
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhC
Q 048258 100 FRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 179 (504)
.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.
T Consensus 657 ~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 657 FDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 77665543 556688888888888888888888876543 334555566666655444444444443
Q ss_pred CCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 048258 180 GYLPESSTFDYTVTCLVTGLDLNETCGILDTF 211 (504)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (504)
|.. |. ..-++...|+++++.+++..-
T Consensus 722 g~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 GKN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 322 22 233455677888877776544
No 312
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.38 E-value=3.1 Score=36.11 Aligned_cols=91 Identities=11% Similarity=-0.068 Sum_probs=36.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 048258 54 GICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK 133 (504)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (504)
-|.++|.+++|+..|....... +.|++++..-..+|.+..++..|..-.......+- .-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 3444455555555544444331 11444444444444444444444444443332210 011122333333333444444
Q ss_pred HHHHHHHHHhcCC
Q 048258 134 AFELLIRFMEREP 146 (504)
Q Consensus 134 a~~~~~~~~~~~~ 146 (504)
|.+-++.++...|
T Consensus 184 AKkD~E~vL~LEP 196 (536)
T KOG4648|consen 184 AKKDCETVLALEP 196 (536)
T ss_pred HHHhHHHHHhhCc
Confidence 4444444444433
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.27 E-value=18 Score=33.34 Aligned_cols=126 Identities=9% Similarity=0.073 Sum_probs=86.6
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV 306 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (504)
+.-....|+...|.+-+..+++..+. ++.........+...|+++.+...+...... +.....+...++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ-DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC-CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33444567777776655555544332 3334444445567889999999988776543 334567888899999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048258 307 HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWG 355 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (504)
+.|..+-+.|....+. ++.............|-++++...|++....+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999998876654 44444444434455677899999999887654
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.13 E-value=0.93 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 470 LILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 470 ~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.++.++.+.|++++|.+.++++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455555556666666666655543
No 315
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.08 E-value=25 Score=34.76 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA 93 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.+|-.|.+.|.+++|.++..+.... .......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566778888888888888555433 233445566677777654
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.04 E-value=1.6 Score=37.67 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=58.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSG 444 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (504)
-..-|.++|.+++|++.|.+.... .| +..++..-..+|.+..++..|..--..++..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 356677888888888888877764 34 77777777778888888887776666655432 111222333333333345
Q ss_pred ChhHHHHHHHHHHhcCCCCCh
Q 048258 445 RFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~~ 465 (504)
...+|.+-++..+. +.|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 66666666666665 35553
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.00 E-value=8.6 Score=32.75 Aligned_cols=58 Identities=12% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (504)
+...+.|..+|.+.+|.++.++..+.+ +.+...+..++..+...||--.+.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334455566666666666666666553 3455556666666666666555555555443
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.81 E-value=1.2 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=13.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 422 (504)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 319
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.76 E-value=3.6 Score=32.20 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHHH
Q 048258 374 GDVARSLRLFQKMQ 387 (504)
Q Consensus 374 g~~~~a~~~~~~~~ 387 (504)
....++.+++++..
T Consensus 42 k~g~es~~miedAi 55 (186)
T PF06552_consen 42 KQGPESKKMIEDAI 55 (186)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHH
Confidence 33344555555443
No 320
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.54 E-value=4.3 Score=32.82 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVYTYTILIDG 89 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 89 (504)
+.+..++.+.+.+...+|+...+.-++.. +.|...-..+++.++-.|+|++|..-++..-+.. ..+-...|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556778888888888888887777664 5566666778888888888888887777665542 22334556666654
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.44 E-value=6.9 Score=30.72 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHHH---HhcCCH-------HHHHHHHHHHHhCCCCCc-HHhHHHHHHHHHhcC
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHGI---CRIGVV-------DEALRLVKQMEGLGYAPN-VYTYTILIDGFCNAK 94 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~-------~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 94 (504)
|+.|++.++.....+ |.|...++.-..++ ++..+. ++|+.-|++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 566777776654444 55666554443333 333443 3444555555554 444 456777777776543
Q ss_pred C-----------hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 95 R-----------VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 95 ~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
. +++|...|++.... .|+..+|+.-+.... +|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 45556666666655 677777777666543 345555555443
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.41 E-value=11 Score=30.00 Aligned_cols=85 Identities=14% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATV-----RSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+...+++++|...++..... |....+ ..|.+.....|.+++|+..++.....+. .......-...+...|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 44555666666555555432 111222 2234445555666666655555433211 1111222234555566
Q ss_pred ChHHHHHHHHHHhhC
Q 048258 165 MASEAAAILRKMGDR 179 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~ 179 (504)
+-++|..-|.+.+..
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666665554
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.36 E-value=9.9 Score=30.56 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=61.0
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCcchhHHHHHHHHHhcCCCh
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMERE---PLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 166 (504)
+.+.|+ +.|.+.|-.+...+.--++.....+...| ...|.+++..++.+.++.. ...++..+.+|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455566 78888898888776555555555555555 4789999999999888753 356888999999999999999
Q ss_pred HHHH
Q 048258 167 SEAA 170 (504)
Q Consensus 167 ~~a~ 170 (504)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 324
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.34 E-value=21 Score=33.04 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CC--CC---CHHhHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCc----
Q 048258 370 LCAIGDVARSLRLFQKMQAD---RI--SP---DIYTFNALIQSFCRMNKIEKAEKAFFSMLT-------LGLRPDN---- 430 (504)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~---- 430 (504)
+...|++.+|.+++...--. |. .| +...||.|...+.+.|.+..+..+|.++.+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 34467777777776544211 21 11 122335666556666666666666665553 3544432
Q ss_pred -------ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 048258 431 -------FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQ 478 (504)
Q Consensus 431 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (504)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.+..+|...
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1232 233567788888888888888764 456778888888887653
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.30 E-value=28 Score=34.41 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN 162 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (504)
..-.++-.+.++|++++|.++........ ......+...+..|..
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYAS 157 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHh
Confidence 33455556667777777777663333221 1233344455555544
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.28 E-value=5.5 Score=31.76 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHccCChhhHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKP----RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (504)
+.+.|++++|..-|...+..-... ....|..-..++.+.+.++.|+.-..+.+..++. .......-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhh
Confidence 334455555555555544431111 1122333344445555555555555555444332 22222233344555555
Q ss_pred HHHHHHHHHHHHhC
Q 048258 271 MDRATEICREMRDR 284 (504)
Q Consensus 271 ~~~a~~~~~~~~~~ 284 (504)
++.|++=|+++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555554
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.08 E-value=1.7 Score=22.83 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
++..++..+...|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667778888888888888888887764
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.03 E-value=27 Score=33.98 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhcCCCcchhHH-HHHHHH-HhcCCChHHHHHHHHHHhh-------CCCCCChhhHHHHHHHHHccC--
Q 048258 131 PHKAFELLIRFMEREPLTQKLVC-NTLLYR-LSNNSMASEAAAILRKMGD-------RGYLPESSTFDYTVTCLVTGL-- 199 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 199 (504)
...|...++...+.+........ .....+ +....+.+.|..+|+.... .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776665433111111 111222 4456677788887777755 33 2334445555555532
Q ss_pred ---ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHh-cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 048258 200 ---DLNETCGILDTFIKRGVKPRFSTYLLLMEALYK-AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK----VNMM 271 (504)
Q Consensus 200 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 271 (504)
+...|..++.+....| .|+.......+..... ..+...|.++|..+.+.|. ...+-.+..+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCH
Confidence 4556777777777665 2333332222222222 1245667777777766652 2333333333321 2356
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCC
Q 048258 272 DRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECG 320 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 320 (504)
+.|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 67777777766665 2221112222223333 55555555555555544
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.91 E-value=1.1 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+..++.+.|++++|.+.|++++..
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 334444445555555555555444
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.80 E-value=10 Score=28.74 Aligned_cols=51 Identities=10% Similarity=0.201 Sum_probs=34.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 371 CAIGDVARSLRLFQKMQADRISPDI---YTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
...++.+++..++..+.-. .|+. .++... .+...|++++|..+|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 3467888888888887764 3432 233333 3567788888888888887753
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.54 E-value=57 Score=37.10 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 431 FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.+|-.........|.++.|...+-.+.+.+ -+.++...++-+...|+...|..+++.-.+.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456666666666777777776665555543 2334455566666777777777777776654
No 332
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.10 E-value=33 Score=33.96 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=93.7
Q ss_pred hcCCchHHHHHHHHHHHHCCC-Ccc-----HHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCChhhHH
Q 048258 301 CKDAEVHKTRELLVMLLECGF-KPD-----KFTFNSMIDC--LCRAHRFEDALDCLS--------EMVEWGVPPNTITYN 364 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 364 (504)
+-.+++..+...++.+....- .|+ ...+..++.+ +-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889889999888875311 111 2233333333 345699999999998 444444444444333
Q ss_pred HH--HHHHHh--cCCHHH--HHHHHHHHHhC-CCCC--CHHhHHHH-HHHHHccC--CHHHHHHHHHHHHhCC--CCCCc
Q 048258 365 IL--IRSLCA--IGDVAR--SLRLFQKMQAD-RISP--DIYTFNAL-IQSFCRMN--KIEKAEKAFFSMLTLG--LRPDN 430 (504)
Q Consensus 365 ~l--~~~~~~--~g~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~a~~~~~~~~~~~--~~~~~ 430 (504)
.+ +..+.. ..+..+ +.++++.+... .-.| +..++..+ +.++.... ...++...+.+..+.- -..+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 112222 222333 66777766542 1122 22233333 33332221 2235555444333211 11121
Q ss_pred ----ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC--ChhhHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 431 ----FSYSALIKALIKSGRFDEAKQTFLSMEQNGC-NP--DSYTSN-----LILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 431 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.+++.+...+. .|+..+..+.........- .| ....|. .+...+...|+.++|........+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 12333333333 6777776665554432111 22 333453 334457778999999998877654
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.10 E-value=23 Score=32.04 Aligned_cols=192 Identities=11% Similarity=0.017 Sum_probs=91.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC---CC-CChhhHHHHHHHHH
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN---VC-PNEATVRSLVHGVF 126 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~l~~~~~ 126 (504)
...+..+.|+|+...+........ .++...+.++... +.++++++...++.+...- +. .....+........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 356777889999966666665543 3455556655533 7889999888888776531 00 01112222222222
Q ss_pred hcCChHHHHHHHHHHHhcCCC-cc----hhHHHHHHHHHhcCCChHH---HHHHHHHHhh--CCCCCChhhHHHHHHHHH
Q 048258 127 RCLDPHKAFELLIRFMEREPL-TQ----KLVCNTLLYRLSNNSMASE---AAAILRKMGD--RGYLPESSTFDYTVTCLV 196 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 196 (504)
+...+.+..++.+-....... .. ...|..-+... .++++. .+.+=..+.. ........++..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 222222222222211111000 00 00111111110 111111 1111111111 111223456667777777
Q ss_pred ccCChhhHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 197 TGLDLNETCGILDTFIKRGVKP---RFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
+.|.++.|...+..+...+... .+.....-+......|+..+|...++....
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776643211 344555556666677777777777766665
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.04 E-value=34 Score=33.98 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
.+...|....|...+..+... .+......+.......|.++.++....
T Consensus 416 ~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 416 ELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 344556667777666666653 233334444444455666666655443
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.95 E-value=1.3 Score=21.77 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQ 34 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~ 34 (504)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.90 E-value=1.5 Score=25.03 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 470 LILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 470 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
.+..+|...|+.+.|+++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777766543
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.81 E-value=35 Score=33.85 Aligned_cols=429 Identities=11% Similarity=0.042 Sum_probs=206.8
Q ss_pred HHHHHHHHhhh-CCCCCCHH--hHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCcHH-----hHHHHHHHHHhcCChhh
Q 048258 28 LAYLKFQQMSV-DQCKPDRF--TYNILIHGIC-RIGVVDEALRLVKQMEGLGYAPNVY-----TYTILIDGFCNAKRVAE 98 (504)
Q Consensus 28 ~a~~~~~~~~~-~~~~~~~~--~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 98 (504)
.|++.++-+.+ ..++|..+ ++-.+...+. ...+++.|...+++....--.++-. ....+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555666653 33344333 3455566655 6788999999999875442222211 2334566666666555
Q ss_pred HHHHHHHHHHcC----CCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHhcC---CCcchhHHHHHHHH--HhcCCChHH
Q 048258 99 VFRVLEIMKERN----VCPNEATVRSL-VHGVFRCLDPHKAFELLIRFMERE---PLTQKLVCNTLLYR--LSNNSMASE 168 (504)
Q Consensus 99 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~--~~~~~~~~~ 168 (504)
|.+.+++..+.- ..+-...+..+ +..+...++...|.+.++.+.... ..+...++-.++.+ ..+.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888776541 11112233333 223333478998999888877643 22233333333333 234565666
Q ss_pred HHHHHHHHhhCC---------CCCChhhHHHHHHHH--HccCChhhHHHHHHHHHhc---C-CC----------------
Q 048258 169 AAAILRKMGDRG---------YLPESSTFDYTVTCL--VTGLDLNETCGILDTFIKR---G-VK---------------- 217 (504)
Q Consensus 169 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~---~-~~---------------- 217 (504)
+.+.++.+.... ..|...+|..++..+ ...|++..+.+.++.+.+. . -.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~ 277 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI 277 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence 766666653211 123445566665544 4567766666655544321 0 00
Q ss_pred ----------cc---------HHHHHHHH--HHHHhcCCcHHHHHHHHHHHhC--------CCCC--CH------HHHHH
Q 048258 218 ----------PR---------FSTYLLLM--EALYKAGRDVEGDRYLNHVFKD--------RLVS--NV------NSYNM 260 (504)
Q Consensus 218 ----------~~---------~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~--------~~~~--~~------~~~~~ 260 (504)
+. ...+..++ -.....+..+.+.+++++..+. ...+ +. ..|..
T Consensus 278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~ 357 (608)
T PF10345_consen 278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR 357 (608)
T ss_pred ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence 00 01111111 2223344444555555444321 1111 11 11211
Q ss_pred HHH---------HHHhcCCHHHHHHHHHHHHhCCC-CCC-------hhhHHHHHHHHhcCCchHHHHHHHH--------H
Q 048258 261 VID---------CFCKVNMMDRATEICREMRDRDI-APN-------LVTFNTLISGHCKDAEVHKTRELLV--------M 315 (504)
Q Consensus 261 l~~---------~~~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 315 (504)
.+. ..+-.+++..|...++.+.+... .|+ +..+....-.+...|+.+.|...|. .
T Consensus 358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~ 437 (608)
T PF10345_consen 358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA 437 (608)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence 111 22346889999999998876421 111 1222222233445799999999997 4
Q ss_pred HHHCCCCccHHHHHHH--HHHHHhcC--CHHH--HHHHHHHHHHC-CCCC--ChhhHHHH-HHHHHhcCC--HHHHHHHH
Q 048258 316 LLECGFKPDKFTFNSM--IDCLCRAH--RFED--ALDCLSEMVEW-GVPP--NTITYNIL-IRSLCAIGD--VARSLRLF 383 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g~--~~~a~~~~ 383 (504)
....+...+..++..+ +-.+...+ +..+ +..+++.+... .-.| +..++..+ +.++..... ..++...+
T Consensus 438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l 517 (608)
T PF10345_consen 438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL 517 (608)
T ss_pred hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 4455545455444432 11222222 2233 66666665432 1122 22233333 333322211 22444443
Q ss_pred HHHHhCC---CCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CC--CcccHHHH-----HHHHHhcCChhHH
Q 048258 384 QKMQADR---ISPD---IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RP--DNFSYSAL-----IKALIKSGRFDEA 449 (504)
Q Consensus 384 ~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l-----~~~~~~~g~~~~a 449 (504)
.+..+.- ...+ ..+++.+...+. .|+..+..+.........- .| ....|..+ ...+-..|+.++|
T Consensus 518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 3332210 1111 223333333333 6887776665544332111 12 23445333 3446678999999
Q ss_pred HHHHHHHHh
Q 048258 450 KQTFLSMEQ 458 (504)
Q Consensus 450 ~~~~~~~~~ 458 (504)
.....+...
T Consensus 597 ~~~~~~~~~ 605 (608)
T PF10345_consen 597 EEARQQLDR 605 (608)
T ss_pred HHHHHHHHH
Confidence 988877654
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.71 E-value=2.1 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+..+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 3556666666666666666666643
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.70 E-value=12 Score=28.38 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=7.7
Q ss_pred cCChhhHHHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKE 108 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~ 108 (504)
.++.+++..+++.|.-
T Consensus 23 ~~d~~D~e~lLdALrv 38 (153)
T TIGR02561 23 SADPYDAQAMLDALRV 38 (153)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3444555555554443
No 340
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.55 E-value=9.3 Score=28.91 Aligned_cols=96 Identities=8% Similarity=0.180 Sum_probs=65.6
Q ss_pred HhhhCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCcHHhHHHHHHHHHhcCC-hhhHHHHHHHH
Q 048258 35 QMSVDQCKPDR--FTYNILIHGICRIGVVDEALRLVKQMEGLGY-----APNVYTYTILIDGFCNAKR-VAEVFRVLEIM 106 (504)
Q Consensus 35 ~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~ 106 (504)
.|.+.+.+++. ...|.++......+++.-.+.+++.+..... ..+...|..++.+.++..- --.+..+|..+
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 34434434443 3357777777777888888877777643210 2356688899988866554 44567788888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCC
Q 048258 107 KERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
++.+.++++.-|..++.++.+...
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcCCC
Confidence 887788888889999988776533
No 341
>PRK09687 putative lyase; Provisional
Probab=86.39 E-value=21 Score=30.98 Aligned_cols=233 Identities=13% Similarity=0.030 Sum_probs=123.2
Q ss_pred ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChhhH
Q 048258 218 PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM----DRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
++..+....+.++...|.. ++......+... ++...-...+.++...|+. +++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3444444455555554432 222223333322 2444444555556666653 4566666655333 2344444
Q ss_pred HHHHHHHhcCCch-----HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 294 NTLISGHCKDAEV-----HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 294 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 4444444433221 122333333222 2355566666667777665 4566666666653 34445555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh
Q 048258 369 SLCAIG-DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFD 447 (504)
Q Consensus 369 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (504)
++...+ +...+...+..+.. .++..+-...+.++.+.|+ ..+...+-+..+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555543 23456666666664 3466666667777777777 45666655555532 2 234566777777774
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048258 448 EAKQTFLSMEQNGCNPDSYTSNLILETL 475 (504)
Q Consensus 448 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (504)
+|...+..+.+. .||..+-...+.++
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 678888877764 45666665555554
No 342
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.56 E-value=21 Score=30.12 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=73.4
Q ss_pred CChhhHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCcchhHHHHHHHHHhcCCC
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEA---TVRSLVHGVFRCLDPHKAFELLIRFMER-----EPLTQKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 165 (504)
.++++|+.-|++..+.......+ .+..++....+.+++++..+.|.+++.- -...+....|+++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666665542222222 3344566666666666666666655431 011123344555554444444
Q ss_pred hHHHHHHHH-------HHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCC----Ccc-------HHHHHHHH
Q 048258 166 ASEAAAILR-------KMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGV----KPR-------FSTYLLLM 227 (504)
Q Consensus 166 ~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~ 227 (504)
.+.-...++ ..... +.-..|-..+...|...+.+....++++++.+.-. ..| ...|..-+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 333333322 22211 11222334455666666666666666666554311 111 23445555
Q ss_pred HHHHhcCCcHHHHHHHHHHH
Q 048258 228 EALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~ 247 (504)
+.|....+-.....+|++.+
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 66666666555556666554
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.22 E-value=10 Score=26.17 Aligned_cols=63 Identities=8% Similarity=0.049 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
|.-++.+-++.+...+.-|++....+.+++|.+.+++..|+++|+-++.+- ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444556666666666666777777777777777777777777777666331 123335555543
No 344
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.97 E-value=15 Score=31.25 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFC----- 266 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 266 (504)
|.+++..++|.+++...-+..+.--+..+.....-|-.|.+.+.+....++-...+...-..+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 445555555555555544444332223334444445555566666655555555554433333333444444433
Q ss_pred hcCCHHHHHHHH
Q 048258 267 KVNMMDRATEIC 278 (504)
Q Consensus 267 ~~~~~~~a~~~~ 278 (504)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 246666666555
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.49 E-value=35 Score=31.83 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCHHhH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH---HHhcCChhHHHHHHHHHHh-cCCCCChh
Q 048258 392 SPDIYTF-NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA---LIKSGRFDEAKQTFLSMEQ-NGCNPDSY 466 (504)
Q Consensus 392 ~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-~~~~~~~~ 466 (504)
.|+..++ +.++..+...|-..+|...+..+.... +|+...|..++.. ...+| ...++++++.|.. .| .|+.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChH
Confidence 3444433 556666777777888888888877752 4455556655543 22233 6677778877764 34 5666
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|.....--...|..+.+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 776666665677777777666666554
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.33 E-value=18 Score=30.76 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=58.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc---
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK--- 302 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 302 (504)
=|+++...+++.++..+.-+..+..-+..+.+...-|-.|.+.+.+..+.++-..-....-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777788888888777666665544445666777777788888888888777776654322233446666655543
Q ss_pred --CCchHHHHHHH
Q 048258 303 --DAEVHKTRELL 313 (504)
Q Consensus 303 --~~~~~~a~~~~ 313 (504)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 67777777666
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.25 E-value=0.56 Score=35.79 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHH
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLE 104 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 104 (504)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555556666666666554434445556666666666655555555554
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.05 E-value=0.71 Score=35.21 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=23.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLS 349 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 349 (504)
+..+.+.+.+......++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444445444443333344444555555555544444444443
No 349
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=83.78 E-value=46 Score=32.63 Aligned_cols=27 Identities=15% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+..|+ .+..+.-.|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 66676 6777778899999999885544
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.28 E-value=27 Score=29.52 Aligned_cols=203 Identities=13% Similarity=0.090 Sum_probs=115.9
Q ss_pred CCCCCChhhHHHHHHHH-HccCChhhHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC---C-
Q 048258 179 RGYLPESSTFDYTVTCL-VTGLDLNETCGILDTFIKRGVK---PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD---R- 250 (504)
Q Consensus 179 ~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~- 250 (504)
.+..||+..-+..-.+- .+..+.++|+.-|++..+.... -...++..++....+.+++++..+.|.+++.- .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34556665544433221 2345778888888888775322 23345666778888888888888888877631 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCh----hhHHHHHHHHhcCCchHHHHHHHHHHHHCC---
Q 048258 251 -LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR--DIAPNL----VTFNTLISGHCKDAEVHKTRELLVMLLECG--- 320 (504)
Q Consensus 251 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 320 (504)
-.-+..+.|.++...+...+.+-..+.++.-.+. +.+ +. .|-..+...|...+.+.+..+++.++...-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 1224556777777766666666666666543321 011 21 233456667777777777777777765431
Q ss_pred -CCcc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH-----HhcCCHHHHHHHH
Q 048258 321 -FKPD-------KFTFNSMIDCLCRAHRFEDALDCLSEMVEW-GVPPNTITYNILIRSL-----CAIGDVARSLRLF 383 (504)
Q Consensus 321 -~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 383 (504)
..-| ...|..-+..|....+-.+...++++.... .--|.+.... +++-| .+.|++++|-.-|
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHH
Confidence 1111 235566666777777777777777766532 1223443332 33333 3456676665433
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.88 E-value=8.6 Score=27.95 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..+-++.+...++.|++......+.+|.+.+++..|.++++-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555566667777777777777777777777777777777654
No 352
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.80 E-value=60 Score=33.25 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
|....-.+.+.|+.++|+.++-....
T Consensus 687 ~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 687 YEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 33344445578888888888766654
No 353
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.77 E-value=3.6 Score=21.50 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
|..+...+...|+++.|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444555555555555554444
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.75 E-value=11 Score=30.55 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChhhHHHHHH
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV--CPNEATVRSLVH 123 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 123 (504)
.+..++.+.+.++..+++.+.+.-.+.. +.|...-..+++.++-.|++++|..-++-.-+... .+....|..+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445666777778888888777766553 44566666777778888888888877776665421 122334555544
No 355
>PRK09687 putative lyase; Provisional
Probab=82.27 E-value=33 Score=29.84 Aligned_cols=235 Identities=11% Similarity=0.017 Sum_probs=142.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh----hhHHHHHHHHHHcCCCCChhh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV----AEVFRVLEIMKERNVCPNEAT 117 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~ 117 (504)
.++.......+.++...|.. .+...+..+.+ .+|...-...+.++.+.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46777777777777777753 34444444544 34666666667777777763 4577777766443 356666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 048258 118 VRSLVHGVFRCLDP-----HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 118 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 192 (504)
-...+.++...+.. ..+.+.+...... .+..+-...+.++.+.+. .++...+-.+... ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 66666666555422 2333333333222 244455566667777765 4566666666652 3555555555
Q ss_pred HHHHccC-ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048258 193 TCLVTGL-DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM 271 (504)
Q Consensus 193 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (504)
.++...+ +...+...+..+.. .++..+-...+.++.+.++ ..+...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 6665543 24466666666664 4566777778888888877 56666666666543 2 234677788888885
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 048258 272 DRATEICREMRDRDIAPNLVTFNTLISGHC 301 (504)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (504)
+|...+..+... .||..+-...+.++.
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888765 336666666665554
No 356
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.12 E-value=30 Score=33.07 Aligned_cols=133 Identities=13% Similarity=-0.008 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
..+.++..+-++|-.+.|+++ .+|+..- .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 566777888888888888765 3444322 223356789999988776643 5667999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHH
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
..|++..|.+.|...... ..|+-.+...|+.+....+-....+.+.. |....++...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHH
Confidence 999999999999887643 35666677778877666666666555543 223345667899999998
Q ss_pred HHHHHh
Q 048258 172 ILRKMG 177 (504)
Q Consensus 172 ~~~~~~ 177 (504)
++.+-.
T Consensus 743 lLi~t~ 748 (794)
T KOG0276|consen 743 LLISTQ 748 (794)
T ss_pred HHHhcC
Confidence 887653
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.40 E-value=30 Score=32.97 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+|...-.+...|+...|...+.................++....+.|...+|..++.+.+... ...+-++..+.+++
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33343333444567777777777666554322233445566666777777777777777766554 33555666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (504)
....+.+.|++.|++..+.... +...-+.+...
T Consensus 687 l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHH
Confidence 7788888888888777766433 44444444433
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.33 E-value=70 Score=32.40 Aligned_cols=226 Identities=10% Similarity=0.038 Sum_probs=117.8
Q ss_pred HHccCChhhHHHHHHHHHhcCCCccHH-------HHHHH-HHHHHhcCCcHHHHHHHHHHHhCC----CCCCHHHHHHHH
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKPRFS-------TYLLL-MEALYKAGRDVEGDRYLNHVFKDR----LVSNVNSYNMVI 262 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 262 (504)
.....++.+|..++.+....-..|+.. .+..+ .......|+++.|.++.+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776642222111 12221 223445788888888877776542 233455667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHhcCCch--HHHHHHHHHHHHCC---CC---ccHHHHH
Q 048258 263 DCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLI-----SGHCKDAEV--HKTRELLVMLLECG---FK---PDKFTFN 329 (504)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~~ 329 (504)
.+..-.|++++|..+..+..+..-..+...+..+. ..+...|+. .+....+....... .+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999998887766542222333333222 234556632 22233333322211 01 1123344
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHhHHHHH
Q 048258 330 SMIDCLCRA-HRFEDALDCLSEMVEWGVPPNTIT--YNILIRSLCAIGDVARSLRLFQKMQADRISP----DIYTFNALI 402 (504)
Q Consensus 330 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 402 (504)
.++.++.+. +...++..-+.-.......|-... +..++......|++++|...+.++......+ +...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 112222222222222211222222 2367777888999999999998887643222 222222222
Q ss_pred H--HHHccCCHHHHHHHHHH
Q 048258 403 Q--SFCRMNKIEKAEKAFFS 420 (504)
Q Consensus 403 ~--~~~~~g~~~~a~~~~~~ 420 (504)
. .....|+...+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 2 23467888888777655
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.62 E-value=6.2 Score=25.93 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=32.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 442 KSGRFDEAKQTFLSMEQNGCNPD--SYTSNLILETLVQQGRFEEAHDIVK 489 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 489 (504)
..++.++|+..|+..+++-..+. ..++-.++.+++..|++.++.++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888888876533322 2355666778888888887776643
No 360
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=79.04 E-value=44 Score=29.27 Aligned_cols=150 Identities=11% Similarity=0.004 Sum_probs=79.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----c
Q 048258 267 KVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR----A 338 (504)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 338 (504)
..+++..+...+......+ +......+...|.. ..+...|...+....+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 4567777888877776643 22333334333332 3456677777776666543 2233334444443 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----
Q 048258 339 HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-------DVARSLRLFQKMQADRISPDIYTFNALIQSFCR---- 407 (504)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 407 (504)
.+..+|..+++.+.+.|..+...+...+...|..-. +...|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 367777777777777664432222333444433321 2235666666666654 33333334433322
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 048258 408 MNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 408 ~g~~~~a~~~~~~~~~~~ 425 (504)
..++.+|..+|...-+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 235666777776666655
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.92 E-value=78 Score=32.11 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=120.5
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHH
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVN-------SYNMVI-DCFCKVNMMDRATEICREMRDR----DIAPNLVTFN 294 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 294 (504)
+-......++.+|..+..++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 334456788999999888877554443221 233322 2334578899999888877654 1233455666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH-----HHHHhcCCH--HHHHHHHHHHHHCC---CC---CChh
Q 048258 295 TLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI-----DCLCRAHRF--EDALDCLSEMVEWG---VP---PNTI 361 (504)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~ 361 (504)
.+..+..-.|++++|..+.....+..-..+...+.... ..+...|+. ......+....... .+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77777888899999998887665432222333333222 235566743 23333333332210 01 1122
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc-H---H
Q 048258 362 TYNILIRSLCAI-GDVARSLRLFQKMQADRISPDIY--TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS-Y---S 434 (504)
Q Consensus 362 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~---~ 434 (504)
++..+..++.+. +...++..-+.--......|-.. .+..|+......|++++|...+.++......+.... | .
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 344455555441 11222222222222221122222 223567778899999999999988876433332111 1 1
Q ss_pred HHHHH--HHhcCChhHHHHHHHH
Q 048258 435 ALIKA--LIKSGRFDEAKQTFLS 455 (504)
Q Consensus 435 ~l~~~--~~~~g~~~~a~~~~~~ 455 (504)
..+.. ....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2356777777776655
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.86 E-value=30 Score=28.59 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 471 ILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 471 l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
++....+.|++++|.++|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 344444455555555555554443
No 363
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.16 E-value=56 Score=30.04 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=15.3
Q ss_pred HHHHHHHHHccCChhhHHHHHHHH
Q 048258 188 FDYTVTCLVTGLDLNETCGILDTF 211 (504)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~ 211 (504)
...+|+-|...|+..+..+.++.+
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 345666777777777766666643
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.84 E-value=11 Score=27.42 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 448 EAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 448 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+..+-++.+....+.|++.+...-++++.+.+++.-|.++++-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666777788889999999999999999999999999999988765
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.43 E-value=9.8 Score=25.05 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-C-HHhHHHHHHHHHccCCHHHHHHH
Q 048258 372 AIGDVARSLRLFQKMQADRISP-D-IYTFNALIQSFCRMNKIEKAEKA 417 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~ 417 (504)
...+.++|+..|+.+.+.-..+ + -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554432111 1 11344445555555555555444
No 366
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.15 E-value=54 Score=29.28 Aligned_cols=99 Identities=6% Similarity=-0.106 Sum_probs=63.7
Q ss_pred CCChhhHHHHHHHHHhcCC------------HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 7 SPSTRLYNAVIDALVKSNS------------IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+-|..+|..++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..+.+...+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456667666654433321 345567788877775 567777777888888888888888888888876
Q ss_pred CCCCcHHhHHHHHHHHHhc---CChhhHHHHHHHHH
Q 048258 75 GYAPNVYTYTILIDGFCNA---KRVAEVFRVLEIMK 107 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 107 (504)
. +-+...|...+...... -.++....+|.+..
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 3 33666777777655431 24556666655554
No 367
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.09 E-value=28 Score=25.96 Aligned_cols=66 Identities=8% Similarity=0.056 Sum_probs=32.8
Q ss_pred CCCHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 392 SPDIYTFNALIQSFCRMNK---IEKAEKAFFSMLTLGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.++..+--.+..++.+..+ ..+...+++++.+.. .|+ ....-.|.-++.+.+++++++++++.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444444555554443 344455555555421 222 22233444456666666666666666665
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.25 E-value=6.5 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 468 SNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 468 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+..++..+...|++++|...++...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555566666666666666665554
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.05 E-value=45 Score=30.62 Aligned_cols=58 Identities=14% Similarity=0.025 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--hHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRF--TYNILIHGI--CRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 74 (504)
.+..+...++|..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566788899999999888876 455444 344444444 3567788888888887654
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.04 E-value=51 Score=28.44 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 399 NALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 399 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
+.....|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--.|.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456667777777777777766653 3455556666777777777666666666553
No 371
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.87 E-value=26 Score=27.71 Aligned_cols=20 Identities=10% Similarity=-0.026 Sum_probs=10.1
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 048258 89 GFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~ 108 (504)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34455555555555555444
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.73 E-value=24 Score=33.52 Aligned_cols=153 Identities=10% Similarity=-0.041 Sum_probs=98.8
Q ss_pred CCCChhhHHHHHHHHHccC-ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHH
Q 048258 181 YLPESSTFDYTVTCLVTGL-DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYN 259 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 259 (504)
-.|+..+...++.-....- .-++.-..+..+.+....|--..++...-.+...|+...|...+..+....+...-....
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 3456666655554433221 122222333333443344444444444445566899999999998888665544445556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
.+.+...+.|....|-.++.+..... ...+-++..+..++....+++.|++.|....+... .++..-+.|...-
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHHH
Confidence 67777788888888988888777654 33567788888999999999999999999887643 2555555555443
No 373
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.64 E-value=80 Score=29.58 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=42.7
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHH
Q 048258 4 LGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE 63 (504)
Q Consensus 4 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 63 (504)
.|..-......+....-...+.++.-.+.++.+...|.......+|.-...|.+.|....
T Consensus 11 q~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 11 QAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred ccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh
Confidence 344444455555555566678899999999888888877677778888888888776543
No 374
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.84 E-value=46 Score=26.43 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHcCCCCCh--hhH-----HHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 96 VAEVFRVLEIMKERNVCPNE--ATV-----RSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+.|+.+++.+.+.-..|.. ... ...+..|.+.|.+++|.++++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 46788888888765333311 122 23456789999999999999999884
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.81 E-value=86 Score=29.59 Aligned_cols=164 Identities=9% Similarity=0.068 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048258 219 RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLIS 298 (504)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (504)
|......++..+...-+..-...+..+++.-+ .+...+..++++|... ..++-..+|+++.+..+. |...-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444555555555555555555555555433 1344555566666555 445555666665555432 2222233333
Q ss_pred HHhcCCchHHHHHHHHHHHHCCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh
Q 048258 299 GHCKDAEVHKTRELLVMLLECGFK-----PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW-GVPPNTITYNILIRSLCA 372 (504)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 372 (504)
.|-+ ++...+...|.++...-++ .-...|..+... -..+.+..+.+..++... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3332 5555555555555432111 001123322211 123444444444444432 222222334444445555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 048258 373 IGDVARSLRLFQKMQAD 389 (504)
Q Consensus 373 ~g~~~~a~~~~~~~~~~ 389 (504)
..++.+|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55666666666655554
No 376
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.32 E-value=8.2 Score=33.73 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=61.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHccCCHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY-TFNALIQSFCRMNKIEKA 414 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a 414 (504)
...|.++.|++.|...+..+ ++....|.--.+++.+.+.+..|++-+....+. .||.. -|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 44566777777777666653 344455555556666666777777666666653 33322 222222333455677777
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 415 EKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
...+....+.++.+.... .+=...-+.+..++-...+++..
T Consensus 202 a~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHH
Confidence 777776666554333222 22222333444444444444444
No 377
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.23 E-value=1.2e+02 Score=30.42 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=27.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
-++.....++++.+...+..+...... ...-..-+.+++...|+.++|...|+.+
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444555665555555554332211 2233334445555566666666666655
No 378
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=70.46 E-value=71 Score=27.64 Aligned_cols=116 Identities=9% Similarity=0.146 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhc-CC-chHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 048258 270 MMDRATEICREMRD-RDIAPNLVTFNTLISGHCK-DA-EVHKTRELLVMLL-ECGFKPDKFTFNSMIDCLCRAHRFEDAL 345 (504)
Q Consensus 270 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (504)
...+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+. ..+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455566553222 1233355555555554443 11 2222223333332 2234556666777777777777777777
Q ss_pred HHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 346 DCLSEMVEW-GVPPNTITYNILIRSLCAIGDVARSLRLFQK 385 (504)
Q Consensus 346 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 385 (504)
+++...... +...|...|..++......||..-...+..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766554 4455777777777777777776655555543
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.36 E-value=18 Score=21.72 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=14.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChh
Q 048258 437 IKALIKSGRFDEAKQTFLSMEQNGCNPDSY 466 (504)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 466 (504)
.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 3445556666666666666655 245443
No 380
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.25 E-value=13 Score=23.32 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
-.+|.++...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444555555544444443
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.10 E-value=81 Score=28.17 Aligned_cols=138 Identities=9% Similarity=0.052 Sum_probs=78.9
Q ss_pred CccHHHHHHHHHHHHhcC---C---------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 322 KPDKFTFNSMIDCLCRAH---R---------FEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~---~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+-|..+|-.++..--..- . .+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346777777776432221 1 345566777777663 345666677777777777777777778877775
Q ss_pred CCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHhC--CCCCCc--------cc-------HHHHHHHHHhcCChhHH
Q 048258 390 RISPDIYTFNALIQSFCR---MNKIEKAEKAFFSMLTL--GLRPDN--------FS-------YSALIKALIKSGRFDEA 449 (504)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~--~~~~~~--------~~-------~~~l~~~~~~~g~~~~a 449 (504)
. +-+...|...+..... .-.++....+|.+.++. +..-.. .+ +..+...+..+|-.+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 2 3356667666665443 22466777777666542 111111 11 11222223456777777
Q ss_pred HHHHHHHHhcCC
Q 048258 450 KQTFLSMEQNGC 461 (504)
Q Consensus 450 ~~~~~~~~~~~~ 461 (504)
..+++.+.+.++
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 777777766543
No 382
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.70 E-value=65 Score=26.86 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=13.8
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCC
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (504)
+...-...+++.+|+.+|+++.....
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334445556666666666655443
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.47 E-value=15 Score=22.94 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048258 470 LILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 470 ~l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
.++.+|...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555555443
No 384
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=69.43 E-value=12 Score=23.70 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR 57 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (504)
|....++-++...++..-.++++..+.++.+.| .-+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444455555555555555666666666655555 3455555555555544
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.70 E-value=48 Score=24.58 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 048258 434 SALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~ 454 (504)
......+...|++++|.++++
T Consensus 103 ~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 103 EEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 333333444444444444443
No 386
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.94 E-value=43 Score=23.77 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhC
Q 048258 61 VDEALRLVKQMEGL 74 (504)
Q Consensus 61 ~~~a~~~~~~~~~~ 74 (504)
.++|..+.+.+...
T Consensus 22 H~EA~tIa~wL~~~ 35 (116)
T PF09477_consen 22 HQEANTIADWLEQE 35 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 34444555544444
No 387
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.43 E-value=52 Score=25.15 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=21.5
Q ss_pred HHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 048258 70 QMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT 117 (504)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 117 (504)
.+.+.|.+++.. -..+++.+.+.++.-.|.++++.+.+.+...+..|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 334444443322 33344444444444555555555555544333333
No 388
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.04 E-value=1.4e+02 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
+.-|+ .+..+.-+|.++.|.+++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 56676 6788888999999999996544
No 389
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.01 E-value=21 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 468 SNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 468 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
...+.-++.+.|++++|+++.+.+++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4456778999999999999999999854
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.45 E-value=44 Score=23.38 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
..+...|+|++|..+.+.+. .||...|.+|.. .+.|-.+.+..-+.++...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34555666666666555542 456666655543 34455555555555555443
No 391
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.17 E-value=52 Score=25.14 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 420 SMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|....++.+...|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344445444432 22344555555555566666666665544444444444444444433
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.87 E-value=33 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048258 472 LETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 472 ~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+......|++++|.+.++++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555555555555543
No 393
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=64.82 E-value=40 Score=22.71 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=20.9
Q ss_pred HHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 31 LKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
++|+.....|+.-|+.+|..++..+.-+-.++...+++..|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555555555555555555554444444444444444443
No 394
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.44 E-value=46 Score=23.28 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 368 RSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
..+...|++++|..+.+.. ..||...|.+|.. .+.|-.+++..-+.++-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445556666666555444 2455555544432 24455555555555555544
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.80 E-value=96 Score=26.72 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHHHHHHccCChhhHHHHHHHHHhcCCCccHHH-------HHHHHHHHHhcCCcHH
Q 048258 190 YTVTCLVTGLDLNETCGILDTFIKRGVKPRFST-------YLLLMEALYKAGRDVE 238 (504)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~ 238 (504)
.+..-..+.+++++|+..+..+...|...+..+ ...+...|...|++..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 344556667777777777777777776655433 3334444444444433
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.72 E-value=59 Score=31.69 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVD------EALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+++++|...|++-.+.++++.....+ -+.-...+|..|+...+.|.++ .|.+++++..- .-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 78999999999999999999987542 2233556888888899999864 56666666553 3467777777
Q ss_pred HHHH
Q 048258 87 IDGF 90 (504)
Q Consensus 87 ~~~~ 90 (504)
+++-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6653
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.60 E-value=18 Score=18.28 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNIL 51 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l 51 (504)
+++.|..+|+++.+.. +.+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHH
Confidence 4455555555555432 2344444433
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.44 E-value=2 Score=31.54 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=15.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCCC
Q 048258 476 VQQGRFEEAHDIVKTSKERGISFKSFP 502 (504)
Q Consensus 476 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 502 (504)
...|.-.+|-.+|++|++.|-.||+|.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPddW~ 132 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDDWD 132 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCccHH
Confidence 344555566666666666666666554
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.23 E-value=38 Score=27.38 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 49 NILIHGICRIGVVDEAL---RLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
...+.......+.+... +..++..+. .|++..|..++.++...|+.++|.+..+++...
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~--~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRR--RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333444444333 444444443 688889999999999999999999999988875
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.15 E-value=28 Score=20.35 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=18.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 048258 440 LIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLIL 472 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 472 (504)
..+.|-.+++..++++|.+.|+..+...+..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344555556666666666666555555555443
No 401
>PRK10941 hypothetical protein; Provisional
Probab=62.65 E-value=81 Score=27.22 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=31.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
+-.+|.+.++++.|++..+.+....|. +..-+..-...|.+.|.+..|..-++...+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344555666666666666666665554 333344444455666666666665555543
No 402
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.59 E-value=48 Score=22.87 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=10.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048258 53 HGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~ 72 (504)
......|++++|++.+++..
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33445566666665555553
No 403
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=62.49 E-value=20 Score=18.82 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHH
Q 048258 445 RFDEAKQTFLSMEQNGCNPDSYTSNLI 471 (504)
Q Consensus 445 ~~~~a~~~~~~~~~~~~~~~~~~~~~l 471 (504)
.++.|..+|++.+.. .|+..+|...
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 355666666666652 4666555543
No 404
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.85 E-value=1.5e+02 Score=27.84 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
|.-....|+...|-+-........ +.++.........+...|+++.+.+.+...... +.....+...+++.....|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 444455677666644333333221 222222222223345567777777776665443 223444666677777777788
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+.|...-+-|....++ ++.+...........|-++++.-.++++....++
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8887777777765543 4444333333344556667777777777665554
No 405
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.73 E-value=58 Score=23.15 Aligned_cols=78 Identities=10% Similarity=0.016 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 375 DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
..++|..+.+.+...+. -...+-..-+..+.+.|++++|. ..-... ..||...|..| +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~~-~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQCH-CYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHTTS---GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---HhcccC-CCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 35566666665555431 11111112223345566666661 111211 23444444333 2345555555555555
Q ss_pred HHHhc
Q 048258 455 SMEQN 459 (504)
Q Consensus 455 ~~~~~ 459 (504)
++..+
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55544
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.69 E-value=1e+02 Score=26.01 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cCChhhHHHHHHHHHH
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN-AKRVAEVFRVLEIMKE 108 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 108 (504)
.++...-+.|+++++.+.+.++...+...+..--+.+..+|-. .|....+++++..+.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455566677777777777777777666666666666665532 2555556666655544
No 407
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.44 E-value=17 Score=31.90 Aligned_cols=85 Identities=18% Similarity=0.070 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHH
Q 048258 58 IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDPHKAFE 136 (504)
Q Consensus 58 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 136 (504)
.|.++.|++.|...+... ++....|..-.+++.+.++...|++=+....+.+ ||. ..|-.--.+....|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 344555555555555443 3333344444444555555555555555444432 121 112222222333455555555
Q ss_pred HHHHHHhcC
Q 048258 137 LLIRFMERE 145 (504)
Q Consensus 137 ~~~~~~~~~ 145 (504)
.+....+.+
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555444443
No 408
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.34 E-value=2.1e+02 Score=29.09 Aligned_cols=100 Identities=11% Similarity=0.023 Sum_probs=59.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH---hcCChhhHHHHHHHHHHcCCCCChhhH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC---NAKRVAEVFRVLEIMKERNVCPNEATV 118 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~ 118 (504)
+-+...+..||..+.+.|++++....-..|...- +.++..|..-+.... ..+...++..+|++....-. ++..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHH
Confidence 4456667778888888888887777666666552 445555655444332 34667777777777765422 33333
Q ss_pred HHHHHHH-------HhcCChHHHHHHHHHHHhc
Q 048258 119 RSLVHGV-------FRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 119 ~~l~~~~-------~~~~~~~~a~~~~~~~~~~ 144 (504)
...+..+ .+.++++....+|.+.+..
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 3333332 2345666777777766543
No 409
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.07 E-value=1.4e+02 Score=27.17 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh-cCCchHHHHHHHHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHC-KDAEVHKTRELLVMLLE 318 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 318 (504)
.+..+.+.|-+..|+++.+-+...++.-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35567778888888888888888766556766667777654 56677767777766543
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.93 E-value=1.5e+02 Score=27.32 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTI--TYNILIRSLCA--IGDVARSLRLFQKMQAD 389 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 389 (504)
.+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455788899999999988876 555444 34445555543 55778888888887654
No 411
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.83 E-value=1.1e+02 Score=25.72 Aligned_cols=85 Identities=14% Similarity=0.038 Sum_probs=55.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH-hHHHHHHHHHhcCChh
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDR-FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY-TYTILIDGFCNAKRVA 97 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 97 (504)
|.....+..|+..|.+.... .|++ .-|..-+-.+.+..+++.+..=-.+..+. .||.. ...-+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44456778888877777655 4555 44566666777778888777766666654 45543 3444555566777888
Q ss_pred hHHHHHHHHHH
Q 048258 98 EVFRVLEIMKE 108 (504)
Q Consensus 98 ~a~~~~~~~~~ 108 (504)
+|+..+.+...
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 88888877743
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.81 E-value=12 Score=27.71 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 61 VDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
-..|..+|.+|.+.|.+|| .|+.|+.
T Consensus 111 k~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3445555555555554444 2444443
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.18 E-value=35 Score=31.59 Aligned_cols=109 Identities=11% Similarity=0.060 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
.-.-+....+.+.++.|+.++.++.+.+ +.....|..-..++.+.+++..|+.=+....+.. +.....|..=..++.+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHh
Confidence 3445667778899999999999999874 3234444444578889999999988888887764 2223344444455666
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGV 125 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (504)
.+++.+|...|+..... .|+..-....+.-|
T Consensus 85 l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 77888888888887765 56666555555443
No 414
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.16 E-value=36 Score=29.53 Aligned_cols=66 Identities=6% Similarity=-0.081 Sum_probs=27.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH-HHHHHHhcCChhhHHHHHHHHHHc
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI-LIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.|+..|...+.-..+.|.+.+...+|.+..+.. +.|+..|.. --.-+...++++.+..+|....+.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 344444444444444444445555555544442 333333322 111122334455555555444443
No 415
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=57.80 E-value=1.3e+02 Score=26.18 Aligned_cols=61 Identities=5% Similarity=0.054 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCchHHHHHHHH
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAPNLVTFNTLISGHCKDAEVHKTRELLV 314 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (504)
+..+....+..++..+++.+-.++++..... +...|...|..++......|+..-...+.+
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4444444555555555555555555444333 333344455555555555555444444443
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.71 E-value=29 Score=30.00 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=29.1
Q ss_pred CCCChhh-HHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHH
Q 048258 181 YLPESST-FDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTY 223 (504)
Q Consensus 181 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 223 (504)
+.|+..+ |+..|....+.||+++|+.++++....|...-..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3445444 457778888888888888888888877765444444
No 417
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.51 E-value=1.5e+02 Score=27.00 Aligned_cols=119 Identities=12% Similarity=-0.015 Sum_probs=65.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------------
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL-------GY--------------- 76 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~--------------- 76 (504)
.+...+|++.-..++.+ . +-.+.++..+-..+..+|+...|.+++++..=. .+
T Consensus 19 ~~v~~~Dp~~l~~ll~~---~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 19 AAVQSHDPNALINLLQK---N--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HHHHccCHHHHHHHHHH---C--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC
Confidence 34445566655555422 1 557778888888899999998888888876311 01
Q ss_pred ---CCcHHhHHHH---HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHH
Q 048258 77 ---APNVYTYTIL---IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF-RCLDPHKAFELLIRFM 142 (504)
Q Consensus 77 ---~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 142 (504)
.-|...|.++ +..+.+.|-+..|.++.+-+...+..-|+......|..|+ +.++++-.+++++...
T Consensus 94 ~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 94 YRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred CccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 1122233332 2334455666666666666655544334444444444433 4455555555555433
No 418
>PRK09857 putative transposase; Provisional
Probab=57.13 E-value=86 Score=27.53 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048258 469 NLILETLVQQGRFEEAHDIVKTSKERGIS 497 (504)
Q Consensus 469 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 497 (504)
..++.-+.+.|..+++.+...+|...|+.
T Consensus 244 MTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 244 MTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34444444444444555555555555544
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.99 E-value=74 Score=25.75 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=26.6
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
.|++.++..++..+...|+.++|.+...++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 57777888888888888888888777777766554
No 420
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.96 E-value=2.4e+02 Score=28.98 Aligned_cols=50 Identities=8% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHH
Q 048258 86 LIDGFCNAKRVAEVFRVLEIMKERNVCPNE--ATVRSLVHGVFRCLDPHKAFELLIRF 141 (504)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 141 (504)
+-..|...|+++.|+++-..- |+. .++..-+..+...+++..|-++|.+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 345566777777777654432 222 24445556677777888888777775
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.63 E-value=60 Score=22.05 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=5.7
Q ss_pred CchHHHHHHHHHHH
Q 048258 304 AEVHKTRELLVMLL 317 (504)
Q Consensus 304 ~~~~~a~~~~~~~~ 317 (504)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444433
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.30 E-value=82 Score=26.80 Aligned_cols=61 Identities=16% Similarity=-0.045 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc----C-CCcchhHHHHHHHHHhcCCChHHHHHHHHHHh
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMER----E-PLTQKLVCNTLLYRLSNNSMASEAAAILRKMG 177 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (504)
....+...|.+.|++++|.++|+.+... + ......+...+..++...|+.+..+.+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3445666777777777777777776432 1 12233455556667777777777776655543
No 423
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.19 E-value=39 Score=19.76 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=10.9
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVR 119 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
.|-..++...+++|.+.|+..+...+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 333334444444444444433333333
No 424
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.67 E-value=1.5e+02 Score=26.27 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHH-hcCCchHHHHHHHHHHHHCCCCccHH----
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDR----DIAPNLVTFNTLISGH-CKDAEVHKTRELLVMLLECGFKPDKF---- 326 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---- 326 (504)
..+......|++.|+-+.|++.+....+. |.+.|...+..-+..+ ....-+.+-++..+.+.+.|...+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555667788888888888887765443 5555655554444333 33333455555556666666555543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
+|..+- |....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 333332 33456788888888776643
No 425
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.43 E-value=2.8e+02 Score=29.40 Aligned_cols=134 Identities=11% Similarity=0.084 Sum_probs=69.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhh-hCC--CCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMS-VDQ--CKPDRFTYNILIHGICRI-GVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
.|-+.+. ..++.+...++|.+|+.+.++-. ..+ +..++..|-.=+..+.++ ++.+.--.++..+...++ ....
T Consensus 692 ~PR~LVL-~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tm 768 (928)
T PF04762_consen 692 YPRALVL-AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTM 768 (928)
T ss_pred ccHhHHH-HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccc
Confidence 4555455 46778889999999988876543 111 124555555555555543 444443333444433221 1112
Q ss_pred HHHHH------------HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhc
Q 048258 83 YTILI------------DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL--DPHKAFELLIRFMER 144 (504)
Q Consensus 83 ~~~l~------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 144 (504)
|.... ......+++....+.+....+. ......-+..++.+|.+.+ ++++|+....++.+.
T Consensus 769 Y~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 769 YKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 22211 0111222333333333333321 1223345567778888887 888888888888765
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.96 E-value=76 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555556666666666655554
No 427
>PRK10941 hypothetical protein; Provisional
Probab=54.72 E-value=1.4e+02 Score=25.79 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHH
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN-VCPNEATVRSLVHGVF 126 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 126 (504)
.+.+-.+|.+.++++.|+.+.+.+.... +.++.-+---.-.|.+.|.+..|..=++...+.. -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3455667889999999999999998874 4455556666667889999999999888887663 2345555555555443
No 428
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.11 E-value=1.9e+02 Score=26.96 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
...|+.-|...|+..+|...++++--- +--...++..++.+..+.|+-....++++.....|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456777788888888888887766421 111455677788888888887777777777766554
No 429
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.09 E-value=1.4e+02 Score=25.16 Aligned_cols=80 Identities=10% Similarity=-0.021 Sum_probs=38.4
Q ss_pred CChhhHHHHHHHHHhcCCCccH-HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 199 LDLNETCGILDTFIKRGVKPRF-STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
..++.|+.-|.+.+.. .|.. .-|..-+.++.+..+++.+.+--.+.++..+. .......+..++.....++.|+..
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccHHHHH
Confidence 3455555544444443 2333 33444455555555555555544444443222 222333344455555666666666
Q ss_pred HHHH
Q 048258 278 CREM 281 (504)
Q Consensus 278 ~~~~ 281 (504)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 6554
No 430
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=52.19 E-value=97 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 49 NILIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
..++--+...|+++.|+++.+.+.+.|
T Consensus 52 ~~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 52 MTVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred HhhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 344445566677777777777776666
No 431
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.17 E-value=1.6e+02 Score=25.69 Aligned_cols=152 Identities=10% Similarity=0.005 Sum_probs=94.4
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK----VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK---- 302 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 302 (504)
...+.+..+...+......+ +......+...|.. ..+..+|.++|....+.|. ......+...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 35566777888887777643 33444444444443 3457888999987777663 3344445555554
Q ss_pred CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---
Q 048258 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH-------RFEDALDCLSEMVEWGVPPNTITYNILIRSLCA--- 372 (504)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 372 (504)
..+..+|...++...+.|..+.......+...|.... +...|...+.++...+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3478889999999888875543222344444444321 2337888888888775 44445555555533
Q ss_pred -cCCHHHHHHHHHHHHhCCC
Q 048258 373 -IGDVARSLRLFQKMQADRI 391 (504)
Q Consensus 373 -~g~~~~a~~~~~~~~~~~~ 391 (504)
..+.++|...|....+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 3378888888888888763
No 432
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.35 E-value=1.1e+02 Score=23.41 Aligned_cols=81 Identities=7% Similarity=0.063 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCcchhHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMKERN-----VCPNEATVRSLVHGVFRCLD-PHKAFELLIRFMEREPLTQKLVCNTL 156 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (504)
.+.++.-....+.+.-...+++.+.-.. -..+...+..++........ --.+..+|.-+.+.+...+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555553211 02344566666666644444 22344555555554555566666666
Q ss_pred HHHHhcC
Q 048258 157 LYRLSNN 163 (504)
Q Consensus 157 ~~~~~~~ 163 (504)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665554
No 433
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.00 E-value=2.1e+02 Score=26.65 Aligned_cols=206 Identities=13% Similarity=0.111 Sum_probs=97.3
Q ss_pred HhcCCcHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCch
Q 048258 231 YKAGRDVEGDRYLNHVFKDRLVSNVNS--YNMVIDCFCKVNMMDRATEICREMRDRDIAPNLV--TFNTLISGHCKDAEV 306 (504)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 306 (504)
...|+.+. ++.+.+.|..++... ....+...+..|+.+-+ +.+.+.|..|+.. .....+......|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34555544 444555665554432 22344455567776544 4444555444322 122344555667877
Q ss_pred HHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHH
Q 048258 307 HKTRELLVMLLECGFKPD----KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTIT--YNILIRSLCAIGDVARSL 380 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~ 380 (504)
+.+..+++ .|...+ .... +.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-+.
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 76655554 332111 1111 2333344556654 4444555555544321 112334445667766554
Q ss_pred HHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc---HHHHHHHHHhcCChhHHHHHHH
Q 048258 381 RLFQKMQADRISPD---IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS---YSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 381 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
.+++ .|..++ ..-.+. +...+..|+.+- .+.+.+.|..++... ....+...+..|+. ++.+
T Consensus 153 ~Ll~----~g~~~~~~d~~g~Tp-L~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~ 219 (413)
T PHA02875 153 LLID----HKACLDIEDCCGCTP-LIIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVR 219 (413)
T ss_pred HHHh----cCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHH
Confidence 4443 333322 222223 333445666554 344556666555322 12344434555654 4555
Q ss_pred HHHhcCCCCChh
Q 048258 455 SMEQNGCNPDSY 466 (504)
Q Consensus 455 ~~~~~~~~~~~~ 466 (504)
.+.+.|..++..
T Consensus 220 ~Ll~~gad~n~~ 231 (413)
T PHA02875 220 LFIKRGADCNIM 231 (413)
T ss_pred HHHHCCcCcchH
Confidence 666777776643
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.00 E-value=76 Score=21.57 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHH
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTR 310 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (504)
.+++....+.++- +......+-.+-...|+.+.|.+++..+. .| +..|..+++++...|...-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 3445555555533 33333333322235577788888888777 53 345677777777766655443
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.48 E-value=3.1e+02 Score=28.51 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=61.4
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHhcC---CCccHHHHHHHHHHHHhcCCc--HHHHHHHHHHHhCCCCCCHHHHHH-
Q 048258 187 TFDYTVTCLVTGLDLNETCGILDTFIKRG---VKPRFSTYLLLMEALYKAGRD--VEGDRYLNHVFKDRLVSNVNSYNM- 260 (504)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 260 (504)
.|..++..|...|+.++|++++.+..+.. ...-...+..+++.+.+.+.. +-..++-....+..+......+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46677778888888888888887777632 011112233344444444443 444444444444332211111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 048258 261 -----------VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK 302 (504)
Q Consensus 261 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (504)
.+-.|......+-+..+++.+....-.++..-.+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344556677777777777666545566666666666653
No 436
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=50.22 E-value=81 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.110 Sum_probs=16.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
.|...--.+...+...|++++|++.+-.+.+.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444455555555556666666555555544
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.17 E-value=1.5e+02 Score=24.68 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=11.5
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 048258 402 IQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 402 ~~~~~~~g~~~~a~~~~~~~~ 422 (504)
|......|+.++|.+...++-
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 444455666666666555443
No 438
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.05 E-value=1.5e+02 Score=24.81 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=42.0
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCChhhHHHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW-G-----------VPPNTITYNILI 367 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 367 (504)
|.+..+.+-..++.+-....+++.+...+.+++ +...||..+|+..++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444444444444444444444444444443 34566666666655543321 0 124444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048258 368 RSLCAIGDVARSLRLFQKMQADRISP 393 (504)
Q Consensus 368 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 393 (504)
..|. .+++++|.+++.++.+.|..|
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 4333 245555555555555555443
No 439
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.35 E-value=82 Score=22.57 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
++..+.++...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4444555555556666666665555
No 440
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.16 E-value=1.5e+02 Score=24.52 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=14.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
++....+.|++++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334455666666777766666653
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.13 E-value=1.1e+02 Score=26.02 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHhh----CC-CCCChhhHHHHHHHHHccCChhhHHHHHHHHH
Q 048258 151 LVCNTLLYRLSNNSMASEAAAILRKMGD----RG-YLPESSTFDYTVTCLVTGLDLNETCGILDTFI 212 (504)
Q Consensus 151 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 212 (504)
...-.+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3444577889999999999999998842 23 34556677888899999999998887765543
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=48.70 E-value=1.5e+02 Score=25.97 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=23.3
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
++++.+.+.++.|.-..+.-+.-.+.+.=.+...+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555444445555555556666655544
No 443
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.68 E-value=51 Score=28.64 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAP 78 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 78 (504)
|+..|..-.+.|++++|+.++++.++.|..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 5677777777777777777777777777543
No 444
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.58 E-value=1.6e+02 Score=24.68 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=17.2
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCC
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVK 217 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 217 (504)
....+..+++.+|+++|+++....+.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445567788888888887766433
No 445
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.39 E-value=1.2e+02 Score=23.18 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=18.0
Q ss_pred CcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 235 RDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
..-.|.++++.+.+.++..+..+....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 45555666666655555445444444444444444
No 446
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=47.14 E-value=1.5e+02 Score=23.89 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDR--------------LVSNVNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
++..|.+.-++.+..++++.+.+.. ..+--...|.....+.+.|.+|.|+.+++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3444555555555555555554321 11222345566666777777777777666
No 447
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.71 E-value=2.1e+02 Score=28.30 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHHhHHHHHHHHHhcCChh------hHHHHHHHHHHcCCCCChhhHHHH
Q 048258 50 ILIHGICRIGVVDEALRLVKQMEGL--GYAPNVYTYTILIDGFCNAKRVA------EVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+|+.+|..+|++.++.++++..... |-+.-...+|..|+...+.|.++ .|.+.+++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998764 32334557888888888988754 4445555444 23355666555
Q ss_pred HHH
Q 048258 122 VHG 124 (504)
Q Consensus 122 ~~~ 124 (504)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 544
No 448
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.56 E-value=1.8e+02 Score=24.49 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
..+..|.+.-++.-|-....++.+ ...+-.+ +--|.+..+-.--.++.+-....+++-+......++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE-----PIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh-----hHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 344455555555544444444432 1122222 223445444444445555555555555555555554 56778
Q ss_pred chHHHHHHHHHHHHC-C-----------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048258 305 EVHKTRELLVMLLEC-G-----------FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSL 370 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (504)
+..+|+..+..-... | -.|.+.....++..|. .+++++|.+++.++-+.|..|... .+.+.+.+
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 888888777654321 1 2467777777777654 467999999999999998876443 33444443
No 449
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.48 E-value=1.7e+02 Score=24.34 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=45.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cHHhHH--HHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAP---NVYTYT--ILIDGFCNAKRVAEVFRVLEIMKERNVCPNEA 116 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 116 (504)
.+...-+|.|+--|.-...+.+|-..|..-. |+.| |..+++ .-|+.....|+.+.|++....+...=+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3444444555544444444444444444322 2222 333322 23444566677777776666554332222322
Q ss_pred hHHHHH----HHHHhcCChHHHHHHHHHHH
Q 048258 117 TVRSLV----HGVFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 117 ~~~~l~----~~~~~~~~~~~a~~~~~~~~ 142 (504)
.+..+. --.++.|..++|++..+.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 222221 12345666667766665533
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.07 E-value=2.4e+02 Score=25.94 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+.-+...|..+|+++.|++.|.+...-- .......|..++..-...|+|........+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 3344455555555555555555533210 01222333344444444455554444444443
No 451
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.35 E-value=4e+02 Score=28.26 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=130.4
Q ss_pred CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 048258 217 KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTL 296 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (504)
.+++.+-...+..+.+.+. +.+...+..+++.. +...-...+.++.+.+........+..+... +|...-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D~---d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALGDG---AAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcCC---CHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 5566777777777777665 34555555555332 4444444445554443221122233333332 355555555
Q ss_pred HHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (504)
+..+...+..+ .. .+-...+ .+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55555433211 11 2222222 3466666666666666554432 222222 34555656666677666654
Q ss_pred HH-HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 377 AR-SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 377 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
+. +...+..+.. .++...-...+.++...|..+.+...+..+.+ .++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 3455555554 34666666777777777776555444555554 3444444556666666664 456666666
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 456 MEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+.+ .|+..+-...+.++.+.+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 654 45666666777777665333455555555544
No 452
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.17 E-value=72 Score=20.26 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=29.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
|....++.++..+++..-.+.++..+.+..+.| ..+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444556666666666666677777777777666 3455555555555544
No 453
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.79 E-value=1.9e+02 Score=24.45 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCCcHH-----------hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 048258 52 IHGICRIGVVDEALRLVKQMEGL------GYAPNVY-----------TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN 114 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 114 (504)
.+-+.+.|++.+|..-|.+.... .-+|-.. .+...-+++...|++-++++-..++.... +.+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Confidence 44556678888777776654211 0122211 22223344445577777777777777653 335
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 115 EATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
...|..-..+.+..-+.++|.+-|..+++..|.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 556666667777777777777777777776554
No 454
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.46 E-value=4.3e+02 Score=28.39 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=19.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 399 NALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 399 ~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+.+++.|.+.+++.+|.+++.+.++
T Consensus 1374 aellrllVdy~rl~eA~dLlsEive 1398 (1480)
T KOG4521|consen 1374 AELLRLLVDYERLSEALDLLSEIVE 1398 (1480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567778888888888888877765
No 455
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.18 E-value=3.1e+02 Score=26.65 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHh-------cCCC------------cc-HHHH---HHHHHHHHhcCCcHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIK-------RGVK------------PR-FSTY---LLLMEALYKAGRDVEGDRY 242 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~------------~~-~~~~---~~l~~~~~~~~~~~~a~~~ 242 (504)
.++-.+...+..+|+.+.+-+++++.+- -.+. |. ...| ...+..+.+.|.+..|.++
T Consensus 285 dsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 285 DSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 3455556677788888777776665441 1111 22 2222 2234566778999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCc---hHHHHHHHHH
Q 048258 243 LNHVFKDRLVSNVNSYNMVIDCFC-KVNMMDRATEICREMRDRD---IAPNLVTFNTLISGHCKDAE---VHKTRELLVM 315 (504)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~ 315 (504)
.+.+.+..+..|+.....+|..|+ +..++.=.+++++.....+ ..|+-.--..+...|..... ...|...+.+
T Consensus 365 cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 365 CKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQ 444 (665)
T ss_pred HHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 999998887778887777787664 6677887888777764432 34443333344444554443 4455555655
Q ss_pred HHHC
Q 048258 316 LLEC 319 (504)
Q Consensus 316 ~~~~ 319 (504)
+...
T Consensus 445 Al~~ 448 (665)
T KOG2422|consen 445 ALKH 448 (665)
T ss_pred HHHh
Confidence 5543
No 456
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.61 E-value=3.9e+02 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=15.7
Q ss_pred CccHHHHHHHHHHHHhcCCcHHHHHHH
Q 048258 217 KPRFSTYLLLMEALYKAGRDVEGDRYL 243 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (504)
++....|..+...+.+.++.++|+.+-
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 334455566666666666666666543
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.50 E-value=65 Score=29.99 Aligned_cols=90 Identities=12% Similarity=-0.019 Sum_probs=54.7
Q ss_pred HHHHhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 048258 157 LYRLSNNSMASEAAAILRKMGDRGYLPESS-TFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR 235 (504)
Q Consensus 157 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (504)
+..+...+.++.|..++.+..+. .|+.. .|..-..++.+.+++..|+.=...+++.. +.-...|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34455667778888888877765 44433 33444467777777777777776666653 2223344444555556666
Q ss_pred cHHHHHHHHHHHhC
Q 048258 236 DVEGDRYLNHVFKD 249 (504)
Q Consensus 236 ~~~a~~~~~~~~~~ 249 (504)
+.+|...|+.....
T Consensus 88 ~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHHHHhhhc
Confidence 66666666666554
No 458
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.20 E-value=1.7e+02 Score=26.12 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADR---ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALI 437 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 437 (504)
.|--=.+-|.+..++..|...|.+-++.. ...+...|+.-..+-...|++..|+.=-...+.. .|+ ...|-.-.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 34444555666666666666666665442 1122334444444444556666666655555543 333 22233333
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 048258 438 KALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~ 457 (504)
.++....++++|..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44455555666666555553
No 459
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=43.02 E-value=2.3e+02 Score=24.87 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHH-HHhCCCCCCh----hhHHHHHHHHhcCCchHHHHHHH-HHHHHCCCCccHHHHHHHHHHHHhc
Q 048258 265 FCKVNMMDRATEICRE-MRDRDIAPNL----VTFNTLISGHCKDAEVHKTRELL-VMLLECGFKPDKFTFNSMIDCLCRA 338 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~-~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (504)
..+...+++.....++ |.+.++ |+. ..|..++++--.+ +-.++. +...+ ....|..|+.+++..
T Consensus 265 ~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWn----Kkeelva~qalr-----hlK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWN----KKEELVAEQALR-----HLKQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhc----hHHHHHHHHHHH-----HHHhhhHHHHHHhcC
Confidence 3344556776666644 554443 454 3466666654333 222211 22222 345688899999999
Q ss_pred CCHHHHH
Q 048258 339 HRFEDAL 345 (504)
Q Consensus 339 ~~~~~a~ 345 (504)
|+.+-.+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 9876543
No 460
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.90 E-value=3.7e+02 Score=27.19 Aligned_cols=25 Identities=0% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
..++-.|....+++..+++.+.+.+
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHh
Confidence 3344445555556666666665554
No 461
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.36 E-value=1.3e+02 Score=21.62 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=18.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.|..++..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466666667777777777777766665
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.30 E-value=2.3e+02 Score=24.64 Aligned_cols=26 Identities=4% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
..+..+..-|++.++.+.+.+++.+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34444555556655555555554443
No 463
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.10 E-value=2.8e+02 Score=25.59 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcH-HhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGL--GYAPNV-YTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
.-.|++.+.-.|+.....+.++.+++. |..|.- +| -.+.-+|.-.|++.+|.+.|-...
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666677766666666666543 222221 22 234455666677777777776554
No 464
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=41.76 E-value=1.5e+02 Score=22.35 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=35.4
Q ss_pred CccHHHHHHHHHHHHhcCC---cHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 217 KPRFSTYLLLMEALYKAGR---DVEGDRYLNHVFK-DRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.++..+...+..++.++.+ ..+.+.+++.+.+ ..+.........+.-++.+.+++++++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444455555555555443 3344455555554 223323333444455566666666666666666654
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.51 E-value=1.8e+02 Score=23.03 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=17.5
Q ss_pred cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 233 AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
.++.-.|.++++.+.+.++..+..+....+..+...|
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3444455555555555544444444444444444444
No 466
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.44 E-value=2.6e+02 Score=25.00 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=24.4
Q ss_pred hcCCchHHHHHHHHHHHHC---CCCccHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 301 CKDAEVHKTRELLVMLLEC---GFKPDKFTFN--SMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
-+.++.++|.+.++++.+. .-.|+...|. ....++...||...+.+.+.+..+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344555555555555421 1223333332 233344455555555555555544
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.42 E-value=1.8e+02 Score=23.02 Aligned_cols=62 Identities=5% Similarity=-0.035 Sum_probs=37.8
Q ss_pred HHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 048258 386 MQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDE 448 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (504)
+.+.|++++..=. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3445655554432 3334444445667788888888887766666665555677777776554
No 468
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.31 E-value=3.1e+02 Score=25.73 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 048258 269 NMMDRATEICREMRDRDIAPN 289 (504)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~ 289 (504)
++.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 556666666666665554443
No 469
>PRK12798 chemotaxis protein; Reviewed
Probab=41.18 E-value=3e+02 Score=25.56 Aligned_cols=238 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHH-HHHhcCCcHHHHHHHHHHH--
Q 048258 171 AILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLME-ALYKAGRDVEGDRYLNHVF-- 247 (504)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~-- 247 (504)
++++.+...+..|+...-..-...-.-.|+..++.+.+..+.....++....+..|+. ......+...|++.|+.+.
T Consensus 98 ~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl 177 (421)
T PRK12798 98 ATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL 177 (421)
T ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccH
Q 048258 248 KDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR--DIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDK 325 (504)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (504)
.-|.-........-+......|+.++...+-.+...+ .-.--...+..+.....+.++-..-..+.+.+.......-.
T Consensus 178 aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~ 257 (421)
T PRK12798 178 APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQR 257 (421)
T ss_pred CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHH
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEMVE---WGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALI 402 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 402 (504)
..|..+...-.-.|+.+-|...-++... .+-.+.....-.-.-+-.-..+++++.+.+..+....+.+....+..-.
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEAA 337 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHHH
Q ss_pred HHHHcc
Q 048258 403 QSFCRM 408 (504)
Q Consensus 403 ~~~~~~ 408 (504)
..-...
T Consensus 338 ~~va~~ 343 (421)
T PRK12798 338 RSVARQ 343 (421)
T ss_pred HHHHHH
No 470
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=40.27 E-value=2.3e+02 Score=23.98 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGIC-RIGVVDEALRLVKQMEG 73 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 73 (504)
..+++..-+.|++++++..+.++...+...+..--+.+..+|- .-|....+++++..+.+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3467888899999999999999998876777777777776663 23555666666666654
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=40.14 E-value=1e+02 Score=22.25 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDE 448 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (504)
++......+..-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 344444445566677777777776555555555555566666665543
No 472
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.03 E-value=4.1e+02 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNP--DSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
+|..-|+.++|..+.++|.... .| ...-...++.+|+..|+-...++++.-
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~ 562 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHV 562 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcc
Confidence 3455566667777777776432 22 111234455666666666666655544
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.00 E-value=1.4e+02 Score=21.37 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Q 048258 14 NAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG--VVDEALRLVKQMEGLG 75 (504)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~ 75 (504)
..++..|...|+.++|...+.++... .........++..+...+ .-+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45677888889999999888886422 122333344444444332 2234445555555544
No 474
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.77 E-value=1.7e+02 Score=22.39 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 048258 409 NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRF 446 (504)
Q Consensus 409 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (504)
+..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 31 ~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 31 NHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556677777766655444444433444555555544
No 475
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.86 E-value=2.5e+02 Score=24.75 Aligned_cols=71 Identities=8% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----------CCchHHH
Q 048258 240 DRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----------DAEVHKT 309 (504)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 309 (504)
.++|+.+...++.|.-.++..+.-.+.+.=.+...+.+|+.+... ..-|..++..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456666767777777777766666677777777888888777653 2235555555543 4677666
Q ss_pred HHHHHH
Q 048258 310 RELLVM 315 (504)
Q Consensus 310 ~~~~~~ 315 (504)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666543
No 476
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.39 E-value=5.1e+02 Score=27.49 Aligned_cols=330 Identities=9% Similarity=0.026 Sum_probs=164.4
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChhhHHH-------HHHHHHccCC---hhhHHHHHHHHHhcCCCccHHHHHHHH
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLPESSTFDY-------TVTCLVTGLD---LNETCGILDTFIKRGVKPRFSTYLLLM 227 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (504)
.++.....++.|+..|+++... ++-..+.+.. ++.-....|+ +++|+.-|+.+... +.-+--|..-+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 559 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKA 559 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHH
Confidence 4667778888999988888654 2112222222 2222233343 66677777766543 22334466666
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCC-CCH------H--------------HHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 048258 228 EALYKAGRDVEGDRYLNHVFKDRLV-SNV------N--------------SYNMVIDCFC---KVNMMDRATEICREMRD 283 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~------~--------------~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 283 (504)
-.|.+.|++++-++.+..+.+.-+. |-. . +|.-++-+.. ..-...+-..+|+.+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYH 639 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHh
Confidence 6788889988888888777654322 111 1 1111111111 11122233445555443
Q ss_pred CCCCCCh--------hh-----HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 284 RDIAPNL--------VT-----FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSE 350 (504)
Q Consensus 284 ~~~~~~~--------~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (504)
+ ..|.. .+ +..++.. ..|..---.+++++.... ++........-+.+..|.++-+.+....
T Consensus 640 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (932)
T PRK13184 640 K-QQATLFCQLDKTPLQFRSSKMELFLSF--WSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDI 713 (932)
T ss_pred h-ccCCceeeccCchhhhhhhhHHHHHHH--HhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3 12211 11 1222221 234444455566665543 3444455555556788888877776666
Q ss_pred HHHC----CCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHccCCHHHHHH
Q 048258 351 MVEW----GVPPNT--------ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY--TFNALIQSFCRMNKIEKAEK 416 (504)
Q Consensus 351 ~~~~----~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~ 416 (504)
+.+. ..+.+. ..|-.-+.+.....+++++.+.+... +|... .+..++.-+...++.+....
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (932)
T PRK13184 714 LAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQ 788 (932)
T ss_pred HHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 5531 111111 11222244455555666666544332 33332 33333333444555555555
Q ss_pred HHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 417 AFFSMLTLGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSY-TSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 417 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+.+.+.+.-.... ......-+.+|.-..++++|-+++......-...+.. .+...+--+.-.++.+-|...|....+
T Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 789 LLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 5555544321111 2233456777888888999999887665432222222 232223233445777777777777665
Q ss_pred cCCCCCCC
Q 048258 494 RGISFKSF 501 (504)
Q Consensus 494 ~~~~~~~~ 501 (504)
.-+-|..+
T Consensus 869 ~~~~~~~~ 876 (932)
T PRK13184 869 DALFPRSL 876 (932)
T ss_pred cccCcchh
Confidence 44444444
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.90 E-value=5.3e+02 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 048258 49 NILIHGICRIGVVDEALRLVKQ 70 (504)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~ 70 (504)
-..++.+...++|.+|..+.++
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~Rk 719 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRK 719 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHH
Confidence 3456667788999988766655
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.84 E-value=3.3e+02 Score=25.14 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREP--LTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
.+..+...|..+|+++.|++.|.+...--. ......|..+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456677778888888888888877544211 11233455566666666776666655555543
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.84 E-value=98 Score=22.55 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 435 ALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 345555555556677777777776665556665555555555554
No 480
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.78 E-value=2.7e+02 Score=24.03 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 253 SNVNSYNMVIDCFCKVNMMDRATEIC 278 (504)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (504)
-++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 36667777777777777777776555
No 481
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.36 E-value=3.5e+02 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=10.4
Q ss_pred CChhhHHHHHHHHHhcCCCcc
Q 048258 199 LDLNETCGILDTFIKRGVKPR 219 (504)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~ 219 (504)
.+.+.++..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444555555555555544443
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.21 E-value=1.1e+02 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=6.3
Q ss_pred cCCHHHHHHHHHHHH
Q 048258 58 IGVVDEALRLVKQME 72 (504)
Q Consensus 58 ~g~~~~a~~~~~~~~ 72 (504)
.|++=+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 483
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.94 E-value=1.8e+02 Score=21.83 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=21.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 048258 398 FNALIQSFCRMNKIEKAEKAFFSMLTLGLR 427 (504)
Q Consensus 398 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 427 (504)
+..++-.+...|+++.|+++.+.++++|+.
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334444567888888888888888888743
No 484
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.53 E-value=1.4e+02 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=15.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048258 114 NEATVRSLVHGVFRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
|......+...+...|++++|++.+-.++...
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33444455555555555555555555555543
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.45 E-value=1.2e+02 Score=21.83 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=14.0
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~ 47 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEE 47 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 3334444455555444433333333333333333
No 486
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.25 E-value=1.3e+02 Score=19.99 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
++..+.++..-++|+++++.+.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555555666666666666655
No 487
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.15 E-value=3.3e+02 Score=24.57 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 048258 412 EKAEKAFFSMLTLGLRPDN----FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLV 476 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 476 (504)
+++..++..++.. -|+. .-|-.++......|.++.++.+|++++..|-.|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555555555553 3342 2345555555666666677777777776666665555454544443
No 488
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.07 E-value=2.7e+02 Score=23.64 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
..++...|++-++++--..++... +.+..+|..-+.+....-+..+|..-|..+++.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344444555555555555555442 334455555555555555555555555555544
No 489
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.07 E-value=4.1e+02 Score=25.72 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWGV-PPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
..++.-|.+.+++++|+.++..|.=... ..-....+.+++.+.+..--.+.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3455667777777777777776631100 001122334444444444344444555555443
No 490
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.86 E-value=2.7e+02 Score=28.69 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=28.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
+..+|..|...-.++|+.+-|...|++.+. |..|--.|.-.|+.++..++-..+.
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHH
Confidence 445566666666666666666655555442 2222223444455555555444443
No 491
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.82 E-value=3.7e+02 Score=25.05 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=28.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc--C----C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKER--N----V-CPNEATVRSLVHGVFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~--~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (504)
.|++..+-.|++..|+++++.+.-. + + .-...++-.+.-+|.-.+++.+|.+.|..++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666655544211 0 1 1122344455555555666666666555443
No 492
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.94 E-value=3e+02 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHH
Q 048258 149 QKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
++.....+...+.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455555666666666666665544
No 493
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=34.41 E-value=1.3e+02 Score=20.24 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 5 GISPSTRLYNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
-|.|+...|+.++......+...-|..++.+..
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V 43 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRIV 43 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHHc
Confidence 456667777777776666666666666665555
No 494
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=3.5e+02 Score=24.17 Aligned_cols=135 Identities=13% Similarity=-0.028 Sum_probs=67.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCC
Q 048258 40 QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL-GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE----RNVCPN 114 (504)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 114 (504)
.+..|...++.|..+-- .+.++--+..+...+. |-..-...+.....-|++.|+-+.|.+.+.+..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~ne--eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKANE--EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 44667777777665421 1222222233333222 2122344566677778888888888887766544 355555
Q ss_pred hhhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCcch----hHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 115 EATVRS-LVHGVFRCLDPHKAFELLIRFMEREPLTQK----LVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 115 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
...+.. +.-.|....-..+-.+..+.+.+.|..-+. .+|..+- +....++.+|-.+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 543322 222222222233444444445555543222 2333332 3345577888888777654
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.53 E-value=4.7e+02 Score=25.58 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALI-KSGRFDEAKQTFLSMEQNG---CNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 479 (504)
...+.|.+..|.++-+-+......-|+.....+|+.|+ +..+++-.+++++.....+ .-|+..--..++..|.+..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcC
Confidence 34567788888887777777543335556666666654 5666777777777664321 2344443344555555544
Q ss_pred C---HHHHHHHHHHHHH
Q 048258 480 R---FEEAHDIVKTSKE 493 (504)
Q Consensus 480 ~---~~~a~~~~~~~~~ 493 (504)
. .+.|...+.++..
T Consensus 431 ~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALK 447 (665)
T ss_pred ChhhHHHHHHHHHHHHH
Confidence 4 4455555555443
No 496
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.28 E-value=2e+02 Score=21.30 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 446 FDEAKQTFLSMEQNGCNP-DSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 446 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
.+.+.++|+.|..+|+-- -...|...+..+...|++++|.++++..
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 459999999999887654 4556788889999999999999999864
No 497
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.26 E-value=92 Score=21.61 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=34.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCCC
Q 048258 442 KSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGISFKSFP 502 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 502 (504)
+..++..|..+|..+.+.|.- +...+..+...+...++.+-- .+++.=++.-+.|+.+.
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll-~e~~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~~~ 94 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRC-DETNFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDLVD 94 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCC-ccchHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCchhh
Confidence 345566777777777777643 333444566666666665555 55555555566666543
No 498
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=32.25 E-value=1.5e+02 Score=19.63 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=36.8
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...-...+..+.+.++. ++...+..+.+ .+|..+-...+.++.+.|. +++...+.++...
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDP-EAIPALIELLK---DEDPMVRRAAARALGRIGD-PEAIPALIKLLQD 73 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHH-HHHHHHHHHHT---SSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHc---CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence 45555555666666665533 55555555553 3566666666777777664 4455555555544
No 499
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=32.23 E-value=1.7e+02 Score=20.03 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
...+-.-|-+.|-.+.+.+++....+. .-...+...|+.++...+.-.-|+.++
T Consensus 35 ID~I~~~y~r~gL~EqvyQ~L~~W~~~--eg~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 35 IDNLAYEYDREGLYEQAYQLLRRFIQS--EGKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHccchHHHHHHh
Confidence 344444555666666777766666653 223366666677766666655555543
No 500
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.83 E-value=2.2e+02 Score=21.19 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 048258 469 NLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 469 ~~l~~~~~~~g~~~~a~~~~ 488 (504)
...+..+...|++.+|.+++
T Consensus 103 e~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 103 EEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33334444444444444443
Done!