Query 048258
Match_columns 504
No_of_seqs 656 out of 2187
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 13:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-43 8.8E-48 341.7 40.2 475 8-495 82-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.5E-40 2.2E-44 317.8 39.4 457 6-475 113-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.6E-30 2.6E-34 233.2 47.1 363 16-388 5-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-29 8.3E-34 229.8 46.1 382 52-480 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 1E-30 3.5E-35 241.8 24.1 185 293-477 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.6E-30 9E-35 239.0 24.3 203 241-443 11-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.1E-26 7.1E-31 219.0 39.4 444 10-465 6-482 (514)
8 2gw1_A Mitochondrial precursor 100.0 3.5E-26 1.2E-30 217.4 39.6 441 45-495 6-479 (514)
9 2y4t_A DNAJ homolog subfamily 100.0 4.6E-24 1.6E-28 199.1 40.0 329 28-388 10-357 (450)
10 3fp2_A TPR repeat-containing p 100.0 1.3E-24 4.5E-29 207.7 37.1 435 10-459 25-491 (537)
11 3fp2_A TPR repeat-containing p 99.9 6.1E-24 2.1E-28 203.0 38.8 432 44-495 24-492 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 8.8E-24 3E-28 197.2 37.8 304 7-318 23-357 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-20 5.7E-25 169.4 38.7 333 9-372 2-352 (359)
14 2xm6_A Protein corresponding t 99.9 2.9E-19 9.8E-24 168.0 48.2 364 29-460 26-433 (490)
15 2xm6_A Protein corresponding t 99.9 3.9E-19 1.3E-23 167.0 47.6 350 9-388 38-431 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 6.1E-20 2.1E-24 165.7 38.9 342 44-440 2-350 (359)
17 2ooe_A Cleavage stimulation fa 99.9 3.5E-19 1.2E-23 169.1 44.8 132 8-143 11-158 (530)
18 2ooe_A Cleavage stimulation fa 99.9 9.8E-19 3.4E-23 166.0 47.3 418 33-459 2-492 (530)
19 3hym_B Cell division cycle pro 99.9 3E-20 1E-24 165.6 31.7 273 6-284 18-299 (330)
20 3hym_B Cell division cycle pro 99.9 6.5E-20 2.2E-24 163.4 30.8 293 183-482 20-322 (330)
21 1xi4_A Clathrin heavy chain; a 99.9 3.6E-17 1.2E-21 161.0 46.7 419 9-489 984-1440(1630)
22 1fch_A Peroxisomal targeting s 99.9 1.1E-19 3.9E-24 164.6 26.5 304 162-490 37-355 (368)
23 1fch_A Peroxisomal targeting s 99.9 5.9E-20 2E-24 166.4 22.5 231 258-494 67-314 (368)
24 1xi4_A Clathrin heavy chain; a 99.9 3.4E-16 1.2E-20 154.2 48.5 387 42-488 982-1378(1630)
25 1b89_A Protein (clathrin heavy 99.8 1.2E-18 4E-23 153.6 27.3 283 21-347 14-304 (449)
26 4eqf_A PEX5-related protein; a 99.8 2.4E-19 8.3E-24 162.1 22.6 276 185-490 65-352 (365)
27 4eqf_A PEX5-related protein; a 99.8 6.8E-19 2.3E-23 159.1 24.6 267 45-315 65-352 (365)
28 4g1t_A Interferon-induced prot 99.8 3.1E-17 1E-21 153.9 36.1 385 43-460 49-460 (472)
29 4g1t_A Interferon-induced prot 99.8 6.2E-17 2.1E-21 151.8 35.5 385 78-495 49-460 (472)
30 3cv0_A Peroxisome targeting si 99.8 4.2E-18 1.4E-22 151.5 25.7 279 9-315 20-311 (327)
31 3cv0_A Peroxisome targeting si 99.8 7.2E-18 2.5E-22 150.0 25.6 278 186-491 22-312 (327)
32 1b89_A Protein (clathrin heavy 99.8 2E-17 6.7E-22 145.9 27.1 269 8-313 30-305 (449)
33 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 141.8 27.0 253 17-285 6-265 (291)
34 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 5.9E-22 143.6 25.1 274 192-486 6-286 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 2.5E-16 8.5E-21 145.5 28.0 306 165-493 89-420 (452)
36 3e4b_A ALGK; tetratricopeptide 99.8 1E-16 3.5E-21 148.1 25.3 347 15-425 8-388 (452)
37 2pl2_A Hypothetical conserved 99.7 6.2E-16 2.1E-20 127.8 21.2 198 7-210 2-210 (217)
38 4e6h_A MRNA 3'-END-processing 99.7 3.6E-13 1.2E-17 128.5 42.4 427 7-439 63-583 (679)
39 3uq3_A Heat shock protein STI1 99.7 1.1E-15 3.8E-20 130.7 23.2 224 10-247 5-234 (258)
40 3uq3_A Heat shock protein STI1 99.7 1.6E-15 5.4E-20 129.7 23.8 225 220-458 5-235 (258)
41 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.7E-22 159.6 10.5 118 10-127 127-248 (1134)
42 3spa_A Mtrpol, DNA-directed RN 99.7 2E-17 6.8E-22 157.9 12.2 121 322-442 124-248 (1134)
43 2pl2_A Hypothetical conserved 99.7 1.2E-15 4.1E-20 126.1 20.9 207 219-455 4-210 (217)
44 3u4t_A TPR repeat-containing p 99.7 5.1E-15 1.7E-19 127.7 25.3 200 10-213 3-207 (272)
45 2h6f_A Protein farnesyltransfe 99.7 7.2E-15 2.4E-19 131.3 26.1 230 10-246 97-344 (382)
46 4e6h_A MRNA 3'-END-processing 99.7 8E-13 2.7E-17 126.1 41.2 152 26-179 48-223 (679)
47 1ouv_A Conserved hypothetical 99.7 5.7E-14 1.9E-18 121.0 29.8 224 219-460 5-252 (273)
48 3u4t_A TPR repeat-containing p 99.7 1.7E-14 5.7E-19 124.4 26.3 237 45-285 3-251 (272)
49 1ouv_A Conserved hypothetical 99.7 1.3E-13 4.5E-18 118.7 31.0 224 254-495 5-252 (273)
50 2vq2_A PILW, putative fimbrial 99.7 6.2E-14 2.1E-18 117.0 25.0 203 8-213 6-210 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.6E-15 2.2E-19 127.2 19.6 246 198-453 18-269 (275)
52 2ho1_A Type 4 fimbrial biogene 99.7 5.9E-14 2E-18 119.4 25.2 203 45-252 37-241 (252)
53 2h6f_A Protein farnesyltransfe 99.7 7.8E-14 2.7E-18 124.7 26.8 228 117-351 99-344 (382)
54 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-14 3.6E-19 123.3 20.0 202 10-251 23-224 (243)
55 2ho1_A Type 4 fimbrial biogene 99.7 1.4E-13 4.8E-18 117.1 26.5 199 221-423 38-237 (252)
56 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.7E-14 5.7E-19 124.6 19.5 224 20-249 15-244 (275)
57 2q7f_A YRRB protein; TPR, prot 99.6 2.9E-14 9.8E-19 120.6 20.5 211 45-296 23-233 (243)
58 2vq2_A PILW, putative fimbrial 99.6 3.1E-13 1.1E-17 112.7 26.1 164 221-387 9-174 (225)
59 4a1s_A PINS, partner of inscut 99.6 1.1E-14 3.7E-19 133.8 17.4 269 225-494 53-372 (411)
60 4a1s_A PINS, partner of inscut 99.6 1.5E-14 5E-19 133.0 17.1 133 187-319 225-372 (411)
61 3sf4_A G-protein-signaling mod 99.6 3.2E-14 1.1E-18 130.5 18.8 279 7-317 6-334 (406)
62 2ond_A Cleavage stimulation fa 99.6 2E-12 7E-17 113.2 28.8 183 307-493 81-269 (308)
63 3sf4_A G-protein-signaling mod 99.6 5.7E-14 2E-18 128.8 19.6 276 184-459 8-336 (406)
64 3ro2_A PINS homolog, G-protein 99.6 1E-13 3.5E-18 123.5 19.4 269 226-495 11-333 (338)
65 2ond_A Cleavage stimulation fa 99.6 3E-12 1E-16 112.1 28.3 235 10-284 8-270 (308)
66 3ro2_A PINS homolog, G-protein 99.6 5.7E-14 1.9E-18 125.2 17.0 278 10-319 5-332 (338)
67 3ulq_A Response regulator aspa 99.6 5E-13 1.7E-17 121.3 22.6 231 261-494 109-368 (383)
68 3vtx_A MAMA; tetratricopeptide 99.6 8.4E-13 2.9E-17 106.1 21.5 168 8-179 3-170 (184)
69 3vtx_A MAMA; tetratricopeptide 99.6 1.1E-12 3.9E-17 105.3 21.4 167 324-494 4-170 (184)
70 3ulq_A Response regulator aspa 99.6 7.3E-13 2.5E-17 120.2 22.5 300 20-353 22-367 (383)
71 4abn_A Tetratricopeptide repea 99.5 4.9E-13 1.7E-17 124.3 18.1 216 59-281 82-318 (474)
72 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-13 8.2E-18 119.6 14.9 202 292-494 71-307 (311)
73 4abn_A Tetratricopeptide repea 99.5 1.5E-12 5.2E-17 121.0 20.7 217 94-316 82-318 (474)
74 3nf1_A KLC 1, kinesin light ch 99.5 2.2E-13 7.6E-18 119.9 13.8 171 8-178 25-223 (311)
75 3q15_A PSP28, response regulat 99.5 9.4E-12 3.2E-16 112.6 23.7 229 261-493 107-364 (378)
76 3q15_A PSP28, response regulat 99.5 1.9E-11 6.7E-16 110.5 25.6 161 122-283 108-289 (378)
77 1hz4_A MALT regulatory protein 99.5 3.9E-11 1.3E-15 108.4 27.6 299 189-495 18-350 (373)
78 3as5_A MAMA; tetratricopeptide 99.4 1.9E-11 6.6E-16 98.2 20.4 165 10-178 8-172 (186)
79 1hz4_A MALT regulatory protein 99.4 1.2E-10 4.3E-15 105.1 26.8 235 13-247 17-280 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.4 9.9E-12 3.4E-16 120.1 19.6 167 8-178 7-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 2.4E-11 8.3E-16 97.6 18.8 165 326-494 9-173 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 1.7E-11 5.9E-16 118.5 19.2 163 291-458 10-173 (723)
83 4i17_A Hypothetical protein; T 99.4 5E-11 1.7E-15 99.4 19.5 195 289-495 6-210 (228)
84 4i17_A Hypothetical protein; T 99.4 1.5E-10 5.1E-15 96.5 21.6 136 42-178 4-145 (228)
85 3edt_B KLC 2, kinesin light ch 99.4 2.1E-11 7.3E-16 105.4 16.1 204 290-494 43-281 (283)
86 2uy1_A Cleavage stimulation fa 99.3 4.2E-09 1.4E-13 97.8 31.7 123 327-457 288-411 (493)
87 3edt_B KLC 2, kinesin light ch 99.3 3.8E-11 1.3E-15 103.8 15.5 158 21-178 12-197 (283)
88 3mv2_B Coatomer subunit epsilo 99.3 2.9E-09 9.9E-14 90.1 26.0 179 274-459 85-282 (310)
89 2uy1_A Cleavage stimulation fa 99.3 1.1E-07 3.7E-12 88.3 35.6 373 7-423 12-412 (493)
90 3qky_A Outer membrane assembly 99.3 7E-10 2.4E-14 94.5 19.5 102 8-110 13-127 (261)
91 2fo7_A Synthetic consensus TPR 99.2 6.4E-10 2.2E-14 83.9 16.7 132 12-146 3-134 (136)
92 1qqe_A Vesicular transport pro 99.2 3.5E-10 1.2E-14 98.0 16.8 162 262-423 44-227 (292)
93 3mv2_B Coatomer subunit epsilo 99.2 5.6E-09 1.9E-13 88.4 23.1 178 205-389 86-282 (310)
94 3qky_A Outer membrane assembly 99.2 2.1E-09 7.1E-14 91.6 19.9 190 42-251 12-226 (261)
95 3urz_A Uncharacterized protein 99.2 1.3E-09 4.5E-14 89.0 17.5 115 10-127 4-134 (208)
96 2fo7_A Synthetic consensus TPR 99.2 1.5E-09 5.1E-14 81.8 16.4 130 363-495 4-133 (136)
97 3rjv_A Putative SEL1 repeat pr 99.2 5.7E-09 2E-13 85.5 20.4 174 310-495 6-198 (212)
98 1qqe_A Vesicular transport pro 99.2 1.4E-09 4.9E-14 94.2 17.7 209 25-248 32-268 (292)
99 2r5s_A Uncharacterized protein 99.2 8.3E-10 2.8E-14 87.6 14.8 163 11-177 7-171 (176)
100 2pzi_A Probable serine/threoni 99.1 1.2E-09 4E-14 106.4 17.6 153 21-178 402-562 (681)
101 4ga2_A E3 SUMO-protein ligase 99.1 3.6E-10 1.2E-14 86.8 11.2 145 16-164 3-148 (150)
102 2yhc_A BAMD, UPF0169 lipoprote 99.1 9.5E-09 3.3E-13 85.1 20.5 183 291-495 5-214 (225)
103 3urz_A Uncharacterized protein 99.1 4.6E-09 1.6E-13 85.8 18.2 73 226-300 60-132 (208)
104 3rjv_A Putative SEL1 repeat pr 99.1 1.3E-08 4.4E-13 83.3 20.6 163 254-425 17-198 (212)
105 3qou_A Protein YBBN; thioredox 99.1 2.8E-09 9.4E-14 92.0 17.3 167 42-212 114-282 (287)
106 3dra_A Protein farnesyltransfe 99.1 9.5E-08 3.2E-12 81.9 26.1 232 18-283 40-286 (306)
107 3dra_A Protein farnesyltransfe 99.1 1.5E-07 5E-12 80.7 27.2 232 61-332 49-300 (306)
108 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.2E-09 2.8E-13 85.5 18.7 187 9-215 3-214 (225)
109 4ga2_A E3 SUMO-protein ligase 99.1 6.1E-10 2.1E-14 85.5 10.4 144 332-480 4-149 (150)
110 3qou_A Protein YBBN; thioredox 99.1 9.5E-09 3.2E-13 88.6 17.2 165 113-281 115-281 (287)
111 2pzi_A Probable serine/threoni 99.0 4.3E-09 1.5E-13 102.4 16.4 147 186-337 434-580 (681)
112 2r5s_A Uncharacterized protein 99.0 3E-09 1E-13 84.4 12.7 161 47-211 8-170 (176)
113 2vsy_A XCC0866; transferase, g 99.0 7.9E-09 2.7E-13 98.9 17.8 154 303-460 2-158 (568)
114 2vsy_A XCC0866; transferase, g 99.0 9E-09 3.1E-13 98.5 18.0 154 23-180 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 9.2E-09 3.2E-13 89.8 16.3 130 22-177 3-142 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.2E-08 2.1E-12 79.5 19.0 133 11-148 7-154 (213)
117 2ifu_A Gamma-SNAP; membrane fu 99.0 3.3E-08 1.1E-12 86.2 18.0 60 222-282 78-142 (307)
118 3u3w_A Transcriptional activat 98.9 2.5E-07 8.6E-12 80.1 21.9 164 330-493 80-265 (293)
119 2qfc_A PLCR protein; TPR, HTH, 98.9 1.7E-07 6E-12 81.1 20.8 167 327-493 77-265 (293)
120 4gco_A Protein STI-1; structur 98.9 5E-08 1.7E-12 72.0 13.8 95 13-109 16-110 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.8E-07 6E-12 76.7 18.3 126 293-424 9-150 (213)
122 3q7a_A Farnesyltransferase alp 98.9 2.6E-06 9E-11 73.7 25.2 243 20-284 64-331 (349)
123 3q7a_A Farnesyltransferase alp 98.9 2.5E-06 8.5E-11 73.9 25.0 243 56-331 65-343 (349)
124 3gyz_A Chaperone protein IPGC; 98.9 9.6E-09 3.3E-13 78.3 8.8 103 43-147 34-136 (151)
125 4gco_A Protein STI-1; structur 98.9 1.3E-07 4.5E-12 69.8 14.6 109 45-156 13-121 (126)
126 1a17_A Serine/threonine protei 98.9 1.3E-07 4.3E-12 74.0 15.4 128 11-141 14-143 (166)
127 3u3w_A Transcriptional activat 98.8 1.9E-06 6.5E-11 74.5 24.1 161 122-282 82-264 (293)
128 3gyz_A Chaperone protein IPGC; 98.8 3.2E-08 1.1E-12 75.4 10.9 104 9-116 35-138 (151)
129 1na0_A Designed protein CTPR3; 98.8 1.8E-07 6.1E-12 69.0 14.4 98 10-109 9-106 (125)
130 2lni_A Stress-induced-phosphop 98.8 1.3E-07 4.5E-12 70.7 13.7 100 8-109 14-113 (133)
131 1a17_A Serine/threonine protei 98.8 1.7E-07 6E-12 73.2 14.9 128 362-492 15-144 (166)
132 2vyi_A SGTA protein; chaperone 98.8 1.1E-07 3.9E-12 70.8 12.9 119 9-130 11-129 (131)
133 2qfc_A PLCR protein; TPR, HTH, 98.8 1.5E-06 5.2E-11 75.2 21.4 166 293-458 78-265 (293)
134 3gw4_A Uncharacterized protein 98.8 9E-08 3.1E-12 77.8 12.9 156 20-176 2-173 (203)
135 2vgx_A Chaperone SYCD; alterna 98.8 4.5E-08 1.5E-12 74.7 9.9 112 32-146 9-120 (148)
136 2c2l_A CHIP, carboxy terminus 98.8 7.5E-08 2.6E-12 82.6 12.4 196 8-214 2-199 (281)
137 4f3v_A ESX-1 secretion system 98.8 3E-07 1E-11 76.8 15.4 187 57-249 18-237 (282)
138 3gw4_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 78.0 12.1 156 302-458 4-175 (203)
139 2lni_A Stress-induced-phosphop 98.8 2.6E-07 8.7E-12 69.1 13.6 118 359-479 15-132 (133)
140 2vgx_A Chaperone SYCD; alterna 98.8 4.9E-08 1.7E-12 74.5 9.6 111 346-459 8-118 (148)
141 2e2e_A Formate-dependent nitri 98.7 6.6E-08 2.3E-12 76.6 10.7 125 20-147 20-147 (177)
142 1na0_A Designed protein CTPR3; 98.7 3.9E-07 1.3E-11 67.1 13.8 112 361-475 10-121 (125)
143 4f3v_A ESX-1 secretion system 98.7 8.8E-07 3E-11 74.0 16.8 191 19-215 16-238 (282)
144 3upv_A Heat shock protein STI1 98.7 3.9E-07 1.3E-11 67.4 13.4 99 9-109 3-101 (126)
145 2c2l_A CHIP, carboxy terminus 98.7 1.4E-07 4.7E-12 81.0 12.0 192 220-423 4-198 (281)
146 1p5q_A FKBP52, FK506-binding p 98.7 3.1E-07 1E-11 81.1 14.3 132 324-457 146-292 (336)
147 2e2e_A Formate-dependent nitri 98.7 1.5E-07 5.3E-12 74.5 11.3 119 302-423 22-143 (177)
148 2vyi_A SGTA protein; chaperone 98.7 5.1E-07 1.8E-11 67.1 13.4 114 363-479 15-128 (131)
149 1p5q_A FKBP52, FK506-binding p 98.7 4.9E-07 1.7E-11 79.7 15.0 150 24-176 127-291 (336)
150 2kck_A TPR repeat; tetratricop 98.7 3.9E-07 1.3E-11 65.6 12.1 100 9-110 5-107 (112)
151 3dss_A Geranylgeranyl transfer 98.7 4E-05 1.4E-09 66.1 26.0 213 238-458 48-303 (331)
152 4gcn_A Protein STI-1; structur 98.7 3.8E-07 1.3E-11 67.4 11.9 98 11-109 9-112 (127)
153 1elw_A TPR1-domain of HOP; HOP 98.6 1.2E-06 4.1E-11 63.6 14.2 98 10-109 4-101 (118)
154 2xcb_A PCRH, regulatory protei 98.6 2.9E-07 9.8E-12 69.8 10.8 96 47-144 20-115 (142)
155 2xcb_A PCRH, regulatory protei 98.6 2.7E-07 9.2E-12 69.9 10.7 97 11-109 19-115 (142)
156 4gcn_A Protein STI-1; structur 98.6 4.6E-07 1.6E-11 67.0 11.3 103 362-467 10-118 (127)
157 3dss_A Geranylgeranyl transfer 98.6 6.7E-05 2.3E-09 64.7 25.8 231 28-285 48-305 (331)
158 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.4E-11 64.5 13.5 100 44-145 3-102 (126)
159 2fbn_A 70 kDa peptidylprolyl i 98.6 8.1E-08 2.8E-12 77.7 7.3 151 16-170 10-176 (198)
160 3sz7_A HSC70 cochaperone (SGT) 98.6 1E-06 3.6E-11 68.6 13.3 101 8-110 9-109 (164)
161 1elr_A TPR2A-domain of HOP; HO 98.6 4.3E-07 1.5E-11 67.5 10.6 110 10-122 4-119 (131)
162 1hxi_A PEX5, peroxisome target 98.6 5.6E-07 1.9E-11 65.8 10.6 96 12-109 19-114 (121)
163 3q49_B STIP1 homology and U bo 98.6 1.2E-06 4.2E-11 65.8 12.9 100 8-109 7-106 (137)
164 1elw_A TPR1-domain of HOP; HOP 98.6 3.9E-06 1.3E-10 60.8 14.9 102 44-147 3-104 (118)
165 2kck_A TPR repeat; tetratricop 98.5 8.6E-07 3E-11 63.7 10.9 96 397-494 8-106 (112)
166 2fbn_A 70 kDa peptidylprolyl i 98.5 1.3E-06 4.6E-11 70.4 12.6 97 396-494 89-186 (198)
167 3sz7_A HSC70 cochaperone (SGT) 98.5 2.8E-06 9.7E-11 66.1 13.4 105 42-148 8-112 (164)
168 3q49_B STIP1 homology and U bo 98.5 2.7E-06 9.1E-11 63.9 12.9 101 357-459 6-106 (137)
169 2dba_A Smooth muscle cell asso 98.5 4.8E-06 1.6E-10 63.4 14.3 98 9-109 27-128 (148)
170 2dba_A Smooth muscle cell asso 98.5 9.5E-06 3.3E-10 61.7 15.6 103 42-147 25-131 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.4 1.2E-06 4.1E-11 65.1 9.5 96 362-458 6-107 (131)
172 1hxi_A PEX5, peroxisome target 98.4 2.6E-06 8.7E-11 62.2 10.8 97 48-146 20-116 (121)
173 4b4t_Q 26S proteasome regulato 98.4 3.7E-05 1.3E-09 70.7 21.1 165 258-422 58-243 (434)
174 2xev_A YBGF; tetratricopeptide 98.4 7.5E-06 2.6E-10 60.6 13.2 95 13-109 5-105 (129)
175 4b4t_Q 26S proteasome regulato 98.4 1.1E-05 3.7E-10 74.3 17.0 198 261-458 10-244 (434)
176 1wao_1 Serine/threonine protei 98.4 3.3E-06 1.1E-10 78.2 12.6 124 13-139 9-134 (477)
177 3rkv_A Putative peptidylprolyl 98.3 8.8E-06 3E-10 63.1 12.1 99 10-109 11-126 (162)
178 2xev_A YBGF; tetratricopeptide 98.3 1.2E-05 4E-10 59.5 12.2 94 363-459 5-105 (129)
179 3ro3_A PINS homolog, G-protein 98.3 6.6E-06 2.3E-10 63.7 11.2 132 11-142 10-156 (164)
180 3ro3_A PINS homolog, G-protein 98.3 3.2E-06 1.1E-10 65.5 9.3 133 362-494 11-158 (164)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 7.5E-06 2.6E-10 75.5 12.5 150 305-457 249-413 (457)
182 1ihg_A Cyclophilin 40; ppiase 98.3 1.1E-05 3.8E-10 71.9 13.1 118 12-132 225-358 (370)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 1.1E-05 3.9E-10 74.3 13.2 151 23-177 247-413 (457)
184 3k9i_A BH0479 protein; putativ 98.2 2.6E-06 8.9E-11 61.9 7.2 86 23-109 3-90 (117)
185 1klx_A Cysteine rich protein B 98.2 4.5E-05 1.5E-09 57.0 13.6 109 340-459 10-126 (138)
186 1ihg_A Cyclophilin 40; ppiase 98.2 1.3E-05 4.3E-10 71.6 12.3 91 394-486 272-362 (370)
187 1wao_1 Serine/threonine protei 98.2 6.2E-06 2.1E-10 76.4 10.5 118 334-454 15-134 (477)
188 2hr2_A Hypothetical protein; a 98.2 1.7E-05 5.9E-10 59.6 10.7 62 432-493 59-130 (159)
189 3rkv_A Putative peptidylprolyl 98.2 2.5E-05 8.4E-10 60.5 12.3 103 44-147 10-129 (162)
190 2hr2_A Hypothetical protein; a 98.2 2.4E-05 8.2E-10 58.8 11.4 97 11-108 12-130 (159)
191 3k9i_A BH0479 protein; putativ 98.2 7.9E-06 2.7E-10 59.2 8.2 86 198-284 3-90 (117)
192 2if4_A ATFKBP42; FKBP-like, al 98.1 5.9E-06 2E-10 72.8 8.3 96 82-179 232-328 (338)
193 2l6j_A TPR repeat-containing p 98.1 6.3E-06 2.1E-10 59.1 6.6 94 8-104 2-102 (111)
194 1dce_A Protein (RAB geranylger 98.1 0.00025 8.6E-09 67.0 18.9 173 271-448 45-244 (567)
195 1klx_A Cysteine rich protein B 98.1 0.00018 6.2E-09 53.7 14.2 110 305-425 10-127 (138)
196 2if4_A ATFKBP42; FKBP-like, al 98.1 1.6E-05 5.5E-10 70.0 9.6 60 398-458 233-292 (338)
197 1dce_A Protein (RAB geranylger 98.1 0.00025 8.6E-09 67.0 18.2 125 27-155 46-183 (567)
198 3n71_A Histone lysine methyltr 98.0 2.8E-05 9.6E-10 71.6 10.2 124 370-493 319-463 (490)
199 1na3_A Designed protein CTPR2; 98.0 6.7E-05 2.3E-09 51.2 9.7 79 10-90 9-87 (91)
200 2kat_A Uncharacterized protein 97.9 4E-05 1.4E-09 55.2 8.4 80 28-109 3-82 (115)
201 1zu2_A Mitochondrial import re 97.9 4.1E-05 1.4E-09 57.4 8.1 99 20-122 12-131 (158)
202 2l6j_A TPR repeat-containing p 97.9 3.7E-05 1.3E-09 54.9 6.9 63 395-458 4-66 (111)
203 3n71_A Histone lysine methyltr 97.8 9.9E-05 3.4E-09 67.9 10.7 25 327-351 353-377 (490)
204 1na3_A Designed protein CTPR2; 97.8 0.00021 7.1E-09 48.6 9.4 81 395-477 9-89 (91)
205 1zu2_A Mitochondrial import re 97.8 4.3E-05 1.5E-09 57.3 5.9 37 338-375 15-51 (158)
206 2kat_A Uncharacterized protein 97.8 0.00025 8.4E-09 51.0 10.0 80 378-459 3-82 (115)
207 3lvg_A Clathrin heavy chain 1; 97.7 2.1E-07 7.1E-12 81.7 -8.7 215 9-245 53-287 (624)
208 3ma5_A Tetratricopeptide repea 97.6 0.00025 8.5E-09 49.4 8.1 64 44-108 6-69 (100)
209 3ly7_A Transcriptional activat 97.6 0.0009 3.1E-08 58.0 12.9 73 112-188 274-346 (372)
210 3ma5_A Tetratricopeptide repea 97.6 0.00028 9.7E-09 49.1 7.8 65 8-73 5-69 (100)
211 3bee_A Putative YFRE protein; 97.2 0.0025 8.5E-08 43.3 8.7 67 7-74 3-72 (93)
212 3qww_A SET and MYND domain-con 97.2 0.0015 5.3E-08 59.0 9.5 62 432-493 342-410 (433)
213 3ly7_A Transcriptional activat 97.2 0.0056 1.9E-07 53.1 12.1 144 322-470 191-348 (372)
214 1pc2_A Mitochondria fission pr 97.1 0.0041 1.4E-07 46.1 9.5 86 376-465 14-104 (152)
215 2kc7_A BFR218_protein; tetratr 97.1 0.0039 1.3E-07 43.0 9.2 59 16-75 6-65 (99)
216 2kc7_A BFR218_protein; tetratr 97.1 0.00064 2.2E-08 47.1 5.1 54 404-458 9-63 (99)
217 3bee_A Putative YFRE protein; 97.1 0.0056 1.9E-07 41.5 9.0 67 392-459 3-72 (93)
218 3qww_A SET and MYND domain-con 97.0 0.0019 6.6E-08 58.4 8.0 86 338-423 311-410 (433)
219 3qwp_A SET and MYND domain-con 96.9 0.0034 1.2E-07 56.8 9.3 92 52-143 294-399 (429)
220 3u64_A Protein TP_0956; tetrat 96.9 0.054 1.9E-06 45.0 15.2 93 96-190 179-282 (301)
221 3qwp_A SET and MYND domain-con 96.9 0.0043 1.5E-07 56.2 9.5 24 433-456 374-397 (429)
222 3mkq_A Coatomer beta'-subunit; 96.9 0.044 1.5E-06 54.8 17.9 45 336-386 663-707 (814)
223 4h7y_A Dual specificity protei 96.7 0.023 7.8E-07 41.5 9.9 102 357-460 10-124 (161)
224 3u64_A Protein TP_0956; tetrat 96.7 0.026 9E-07 46.9 11.7 79 377-459 180-269 (301)
225 1pc2_A Mitochondria fission pr 96.6 0.024 8.1E-07 42.1 10.0 82 26-109 14-100 (152)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.25 8.7E-06 49.3 20.6 155 17-210 606-761 (814)
227 4h7y_A Dual specificity protei 96.6 0.027 9.4E-07 41.1 9.6 103 7-111 10-125 (161)
228 3mkq_B Coatomer subunit alpha; 96.5 0.18 6.2E-06 38.4 16.8 131 16-176 11-141 (177)
229 2v5f_A Prolyl 4-hydroxylase su 96.5 0.026 8.8E-07 39.3 9.3 66 9-74 4-75 (104)
230 2v5f_A Prolyl 4-hydroxylase su 96.5 0.03 1E-06 38.9 9.5 63 46-108 6-74 (104)
231 3mkq_B Coatomer subunit alpha; 96.4 0.2 6.8E-06 38.2 16.7 128 334-491 14-141 (177)
232 1nzn_A CGI-135 protein, fissio 96.1 0.027 9.4E-07 40.0 7.4 82 375-458 16-102 (126)
233 4ady_A RPN2, 26S proteasome re 96.0 1.4 4.8E-05 43.7 35.6 25 83-107 233-257 (963)
234 1wy6_A Hypothetical protein ST 95.9 0.29 9.9E-06 35.0 15.2 66 430-496 91-156 (172)
235 3lvg_A Clathrin heavy chain 1; 95.7 0.0038 1.3E-07 55.6 2.1 218 8-241 81-325 (624)
236 1nzn_A CGI-135 protein, fissio 95.1 0.23 7.9E-06 35.3 9.2 83 25-109 16-103 (126)
237 1wy6_A Hypothetical protein ST 95.0 0.63 2.2E-05 33.3 16.0 64 186-250 92-155 (172)
238 1y8m_A FIS1; mitochondria, unk 94.7 0.85 2.9E-05 33.1 11.4 72 392-465 36-110 (144)
239 3o48_A Mitochondria fission 1 94.5 0.44 1.5E-05 34.1 9.3 46 413-458 61-106 (134)
240 4ady_A RPN2, 26S proteasome re 94.2 5 0.00017 39.9 35.7 26 48-73 233-258 (963)
241 3ffl_A Anaphase-promoting comp 93.4 0.73 2.5E-05 34.5 9.1 120 12-144 22-151 (167)
242 2ff4_A Probable regulatory pro 93.2 0.34 1.2E-05 43.2 8.6 73 46-119 172-249 (388)
243 4gns_B Protein CSD3, chitin bi 93.1 1.6 5.3E-05 42.4 13.2 53 438-491 345-397 (754)
244 1v54_E Cytochrome C oxidase po 93.0 1.3 4.6E-05 29.7 9.2 62 410-472 25-86 (109)
245 4b4t_P 26S proteasome regulato 92.9 5.3 0.00018 36.2 18.6 190 268-458 29-246 (445)
246 4gns_B Protein CSD3, chitin bi 92.5 2.4 8.4E-05 41.1 13.8 126 49-177 252-398 (754)
247 2ff4_A Probable regulatory pro 92.3 1.1 3.7E-05 39.9 10.6 127 8-153 110-248 (388)
248 1v54_E Cytochrome C oxidase po 92.1 1.8 6.3E-05 29.0 9.1 49 305-353 25-73 (109)
249 2y69_E Cytochrome C oxidase su 91.5 2.6 8.9E-05 30.1 9.2 62 410-472 68-129 (152)
250 4b4t_P 26S proteasome regulato 91.3 8.2 0.00028 35.0 20.3 153 23-176 29-203 (445)
251 4fhn_B Nucleoporin NUP120; pro 91.0 11 0.00037 39.3 17.6 149 13-168 815-989 (1139)
252 2wpv_A GET4, UPF0363 protein Y 90.7 7.1 0.00024 33.2 19.6 111 118-243 36-157 (312)
253 3o48_A Mitochondria fission 1 90.6 3.5 0.00012 29.5 10.0 68 217-284 37-107 (134)
254 4fhn_B Nucleoporin NUP120; pro 90.6 11 0.00036 39.4 17.1 152 48-206 815-992 (1139)
255 2wpv_A GET4, UPF0363 protein Y 90.6 7.3 0.00025 33.1 17.8 112 153-279 36-158 (312)
256 3ffl_A Anaphase-promoting comp 90.0 1.4 4.7E-05 33.1 7.3 118 363-493 23-150 (167)
257 2y69_E Cytochrome C oxidase su 89.8 4.1 0.00014 29.1 9.2 62 306-368 69-130 (152)
258 1zbp_A Hypothetical protein VP 89.2 2.3 7.9E-05 34.9 8.7 117 17-146 4-131 (273)
259 3lpz_A GET4 (YOR164C homolog); 88.4 11 0.00038 32.3 20.5 84 251-353 132-215 (336)
260 3lpz_A GET4 (YOR164C homolog); 88.2 12 0.0004 32.2 19.8 167 117-317 37-214 (336)
261 4b4t_R RPN7, 26S proteasome re 86.1 8.1 0.00028 34.9 11.4 98 81-178 132-236 (429)
262 1qsa_A Protein (soluble lytic 86.0 24 0.00083 33.5 38.7 138 19-166 15-152 (618)
263 4b4t_R RPN7, 26S proteasome re 84.5 8.2 0.00028 34.9 10.7 120 95-214 109-237 (429)
264 3esl_A Checkpoint serine/threo 84.5 7.7 0.00026 30.2 8.8 74 391-464 73-149 (202)
265 1y8m_A FIS1; mitochondria, unk 83.8 10 0.00036 27.5 12.2 66 113-178 37-105 (144)
266 3esl_A Checkpoint serine/threo 83.4 9.8 0.00033 29.7 9.0 57 373-429 92-149 (202)
267 4a1g_A Mitotic checkpoint seri 80.5 9.4 0.00032 28.2 7.7 69 392-463 65-134 (152)
268 1zbp_A Hypothetical protein VP 79.7 11 0.00037 31.0 8.5 56 53-109 5-60 (273)
269 2uwj_G Type III export protein 78.3 13 0.00043 25.0 7.4 78 340-425 21-98 (115)
270 2p58_C Putative type III secre 77.6 14 0.00046 24.9 8.3 78 340-425 22-99 (116)
271 4a1g_A Mitotic checkpoint seri 77.2 20 0.00067 26.5 8.8 50 379-428 84-134 (152)
272 2uwj_G Type III export protein 73.4 18 0.00061 24.3 7.2 50 54-109 48-97 (115)
273 3txn_A 26S proteasome regulato 73.3 49 0.0017 29.3 23.0 166 220-386 19-207 (394)
274 2p58_C Putative type III secre 72.5 19 0.00065 24.2 8.2 50 54-109 49-98 (116)
275 2wvi_A Mitotic checkpoint seri 72.3 14 0.00047 27.8 6.7 73 392-467 60-133 (164)
276 1qsa_A Protein (soluble lytic 71.8 70 0.0024 30.4 34.2 49 333-384 389-437 (618)
277 1bpo_A Protein (clathrin); cla 71.4 54 0.0019 29.5 11.1 110 23-137 342-451 (494)
278 4aez_C MAD3, mitotic spindle c 70.1 21 0.00071 28.4 7.6 71 391-464 113-184 (223)
279 2d2s_A Exocyst complex compone 63.9 56 0.0019 26.4 9.2 89 51-142 24-118 (235)
280 2d2s_A Exocyst complex compone 62.9 53 0.0018 26.5 8.9 90 16-108 24-119 (235)
281 2ion_A PDCD4, programmed cell 62.0 42 0.0014 24.8 7.6 64 13-77 12-77 (152)
282 3bu8_A Telomeric repeat-bindin 59.3 48 0.0016 26.0 7.4 20 54-73 123-142 (235)
283 1bpo_A Protein (clathrin); cla 58.4 52 0.0018 29.6 8.6 99 3-103 354-452 (494)
284 2wvi_A Mitotic checkpoint seri 58.3 56 0.0019 24.5 10.0 70 357-429 60-130 (164)
285 1ug3_A EIF4GI, eukaryotic prot 58.0 92 0.0031 26.9 11.9 63 13-76 14-77 (339)
286 2nsz_A Programmed cell death p 55.3 54 0.0018 23.4 8.9 64 13-77 10-75 (129)
287 1wdy_A 2-5A-dependent ribonucl 55.0 79 0.0027 25.9 9.5 243 227-500 9-281 (285)
288 4aez_C MAD3, mitotic spindle c 54.2 72 0.0025 25.4 8.0 52 377-428 131-183 (223)
289 3bu8_A Telomeric repeat-bindin 53.8 79 0.0027 24.9 11.7 49 96-144 88-143 (235)
290 4gq2_M Nucleoporin NUP120; bet 48.9 2.3E+02 0.0079 28.8 13.2 52 16-72 816-867 (950)
291 3eyy_A Putative iron uptake re 46.3 82 0.0028 23.0 7.0 56 71-128 10-65 (145)
292 2nsz_A Programmed cell death p 46.0 60 0.002 23.1 6.0 64 48-112 10-75 (129)
293 2fe3_A Peroxide operon regulat 44.7 88 0.003 22.8 7.9 58 71-129 13-70 (145)
294 3txn_A 26S proteasome regulato 44.1 1.7E+02 0.0058 25.9 27.7 93 260-352 104-208 (394)
295 2fe3_A Peroxide operon regulat 43.5 92 0.0032 22.6 7.5 59 420-479 12-70 (145)
296 3bqo_A Telomeric repeat-bindin 42.6 27 0.00094 26.9 3.8 20 88-107 125-144 (211)
297 2w57_A Ferric uptake regulatio 42.5 98 0.0034 22.7 7.4 58 71-129 8-66 (150)
298 3eyy_A Putative iron uptake re 42.5 77 0.0026 23.1 6.3 57 421-479 10-66 (145)
299 1mzb_A Ferric uptake regulatio 42.4 92 0.0031 22.3 7.2 58 71-129 9-67 (136)
300 1mzb_A Ferric uptake regulatio 41.5 95 0.0033 22.2 7.0 15 410-424 33-47 (136)
301 4b4t_S RPN3, 26S proteasome re 41.5 2.2E+02 0.0074 26.3 11.5 66 324-389 230-299 (523)
302 3ltj_A Alpharep-4; protein eng 40.9 1.2E+02 0.0041 23.2 19.8 172 42-233 25-196 (201)
303 2f6m_A Suppressor protein STP2 40.8 49 0.0017 20.1 4.0 45 13-58 5-49 (65)
304 2ion_A PDCD4, programmed cell 40.1 78 0.0027 23.4 6.0 64 48-112 12-77 (152)
305 4ets_A Ferric uptake regulatio 39.6 55 0.0019 24.5 5.3 15 220-234 69-83 (162)
306 2w57_A Ferric uptake regulatio 39.1 1E+02 0.0035 22.6 6.6 58 421-479 8-66 (150)
307 1k1a_A B-cell lymphoma 3-encod 39.0 1.4E+02 0.0048 23.5 10.8 22 265-286 16-37 (241)
308 2b7e_A PRE-mRNA processing pro 37.9 26 0.0009 20.8 2.5 29 167-195 3-31 (59)
309 3jxi_A Vanilloid receptor-rela 37.4 29 0.00098 28.3 3.8 22 473-494 230-251 (260)
310 4b4t_S RPN3, 26S proteasome re 37.2 2.5E+02 0.0087 25.9 11.3 67 80-146 231-301 (523)
311 3hra_A Ankyrin repeat family p 36.5 1.1E+02 0.0037 23.3 7.0 31 434-464 142-172 (201)
312 2keb_A DNA polymerase subunit 36.4 95 0.0032 20.7 5.6 56 414-471 28-88 (101)
313 3ltm_A Alpha-REP4; protein eng 35.3 1.5E+02 0.0053 22.8 19.7 174 42-235 30-203 (211)
314 2zu6_B Programmed cell death p 35.1 2.1E+02 0.0071 24.3 12.0 25 13-37 6-30 (307)
315 3l6a_A Eukaryotic translation 34.9 2.3E+02 0.0079 24.7 15.8 62 13-78 15-81 (364)
316 4ets_A Ferric uptake regulatio 34.7 95 0.0033 23.2 5.9 59 211-270 24-84 (162)
317 2cos_A Serine/threonine protei 34.7 57 0.002 18.8 3.4 37 450-491 10-48 (54)
318 2xig_A Ferric uptake regulatio 34.1 1.4E+02 0.0047 21.9 8.3 58 71-129 18-75 (150)
319 3eiq_C Programmed cell death p 32.8 2.5E+02 0.0084 24.5 15.5 25 13-37 57-81 (358)
320 3kea_A K1L; tropism, ANK repea 32.4 2.1E+02 0.0072 23.6 10.1 15 371-385 169-183 (285)
321 2o03_A Probable zinc uptake re 31.6 1E+02 0.0035 21.9 5.4 17 408-424 23-39 (131)
322 3ltm_A Alpha-REP4; protein eng 30.8 1.8E+02 0.0063 22.4 20.0 172 78-269 31-202 (211)
323 3t5v_B Nuclear mRNA export pro 30.7 1.7E+02 0.0057 26.6 7.6 60 434-493 180-248 (455)
324 2fu4_A Ferric uptake regulatio 30.3 1E+02 0.0036 19.4 7.3 58 71-129 8-66 (83)
325 2o03_A Probable zinc uptake re 30.2 1.2E+02 0.0041 21.5 5.6 42 228-269 18-59 (131)
326 3mwm_A ZUR, putative metal upt 30.2 97 0.0033 22.3 5.1 19 407-425 25-43 (139)
327 4gq2_M Nucleoporin NUP120; bet 29.9 3.5E+02 0.012 27.5 10.7 27 433-459 900-926 (950)
328 3bqo_A Telomeric repeat-bindin 29.8 2E+02 0.0067 22.4 9.2 48 376-424 94-146 (211)
329 2xig_A Ferric uptake regulatio 29.6 1.7E+02 0.0057 21.4 8.1 58 211-269 18-75 (150)
330 3jxi_A Vanilloid receptor-rela 29.5 60 0.0021 26.3 4.5 52 265-316 12-72 (260)
331 3mwm_A ZUR, putative metal upt 28.9 1.1E+02 0.0037 22.1 5.2 46 84-129 17-62 (139)
332 2ijq_A Hypothetical protein; s 28.2 1.9E+02 0.0064 21.6 8.4 50 59-108 46-103 (161)
333 3kae_A CDC27, possible protein 27.8 2E+02 0.0068 21.8 13.9 84 18-112 10-94 (242)
334 2rg8_A Programmed cell death p 27.7 90 0.0031 23.4 4.7 25 13-37 13-37 (165)
335 1ug3_A EIF4GI, eukaryotic prot 27.6 2.9E+02 0.01 23.7 11.7 23 258-280 144-166 (339)
336 2zu6_B Programmed cell death p 27.4 2.2E+02 0.0077 24.0 7.5 23 50-72 171-193 (307)
337 2crb_A Nuclear receptor bindin 26.5 1.1E+02 0.0036 20.2 4.0 25 12-36 17-41 (97)
338 3eu9_A Huntingtin-interacting 26.3 2.3E+02 0.0079 22.1 8.8 221 227-462 13-239 (240)
339 1oyz_A Hypothetical protein YI 26.2 2.7E+02 0.0091 22.7 23.6 219 43-284 35-263 (280)
340 3hra_A Ankyrin repeat family p 25.9 2.2E+02 0.0074 21.5 7.9 59 370-430 113-173 (201)
341 2yru_A Steroid receptor RNA ac 25.8 1.2E+02 0.0041 21.2 4.6 18 91-108 72-89 (118)
342 3pvs_A Replication-associated 25.2 3.8E+02 0.013 24.2 14.7 54 197-250 267-325 (447)
343 2p22_A Suppressor protein STP2 24.7 97 0.0033 23.5 4.2 53 43-96 109-161 (174)
344 1wgl_A TOLL-interacting protei 23.1 1.3E+02 0.0043 17.9 4.0 23 162-184 35-57 (59)
345 2r9g_A AAA ATPase, central reg 22.9 2.7E+02 0.0093 21.7 10.3 99 289-388 10-116 (204)
346 2ijq_A Hypothetical protein; s 21.7 2.5E+02 0.0087 20.9 8.4 51 373-423 45-103 (161)
347 3ubw_A 14-3-3E, 14-3-3 protein 21.4 3.4E+02 0.012 22.2 10.2 170 79-248 30-227 (261)
348 3mv2_A Coatomer subunit alpha; 21.1 3.9E+02 0.013 22.8 11.9 70 410-494 185-256 (325)
349 3c1d_A Protein ORAA, regulator 21.0 2.6E+02 0.0088 20.7 9.8 100 375-479 45-144 (159)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-43 Score=341.68 Aligned_cols=475 Identities=10% Similarity=-0.017 Sum_probs=388.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56777888888888888888888888888754 467778888888888888888888888887543 56788888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER---------------NVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLV 152 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
.+|.+.|++++|.++|+++... +.+++..++..++.+|.+.|++++|.+.|+++...+|. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 8888888888888888843211 12234677888888888888888888888888877654 4445
Q ss_pred HHHHHHHHhcCCChHHHHH--H-HHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAA--I-LRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEA 229 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (504)
+..+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.++++.+.+. +++..++..++..
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 5555544443332222111 1 333333333334445566677888899999999999998876 5789999999999
Q ss_pred HHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHH
Q 048258 230 LYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKT 309 (504)
Q Consensus 230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 309 (504)
+.+.|++++|.++|+++.+.++. +..++..++.++.+.|++++|..+++.+.... +.+..++..++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987755 78889999999999999999999999998664 44788999999999999999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
.++|+.+.+.. +.+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998753 3468899999999999999999999999999874 458889999999999999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 048258 390 RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTL----GLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463 (504)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 463 (504)
. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 3 457889999999999999999999999999875 55777 6789999999999999999999999999864 44
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 464 DSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 464 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+..++..++.+|.+.|++++|.++++++.+..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999865
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-40 Score=317.78 Aligned_cols=457 Identities=11% Similarity=0.020 Sum_probs=387.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----------- 74 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------- 74 (504)
..|+..++..++..|.+.|++++|+.+|+.+... ++++.+++.++.+|.+.|++++|+++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 4578889999999999999999999999998654 688999999999999999999999999953322
Q ss_pred ----CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH--H-HHHHHhcCCC
Q 048258 75 ----GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFE--L-LIRFMEREPL 147 (504)
Q Consensus 75 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~ 147 (504)
+.+++..+|+.++.+|.+.|++++|.+.|+++.+.+. .+...+..+...+...++.+.+.. + +..+...++.
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2345688999999999999999999999999998752 244555555554443332222211 1 4444444444
Q ss_pred cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHH
Q 048258 148 TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLM 227 (504)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (504)
....+|+.++..|.+.|++++|.++|+++... .++..++..++..+.+.|++++|+++++++.+.+ +.+..++..++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 45566777788899999999999999999875 4789999999999999999999999999999875 44778899999
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchH
Q 048258 228 EALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVH 307 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (504)
.++.+.|++++|..+++.+.+..+. +..+++.++..|.+.|++++|.++|+++.+... .+..+|..++..|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999976544 788999999999999999999999999988643 36789999999999999999
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 308 KTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQ 387 (504)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 387 (504)
+|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998875 3478899999999999999999999999999864 4578899999999999999999999999998
Q ss_pred hC----CCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 048258 388 AD----RISPD--IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGC 461 (504)
Q Consensus 388 ~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 461 (504)
+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|...|++++|.+.++++.+.
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI-- 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 75 55777 7799999999999999999999999999874 447889999999999999999999999999985
Q ss_pred CC-ChhhHHHHHHHH
Q 048258 462 NP-DSYTSNLILETL 475 (504)
Q Consensus 462 ~~-~~~~~~~l~~~~ 475 (504)
.| +...+..+..+|
T Consensus 580 ~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 580 SPNEIMASDLLKRAL 594 (597)
T ss_dssp CTTCHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHH
Confidence 45 556666666554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=7.6e-30 Score=233.16 Aligned_cols=363 Identities=10% Similarity=-0.004 Sum_probs=225.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
+...+.+.|++++|...++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4566778899999999998887765 5567777777888888899999998888887764 5577888888888889999
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|+..|+++.+.. +.+...+..+..++...|++++|.+.|+++....|. ....+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999888763 234557888888888888888888888888877654 445666677777777777777777777
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNV 255 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 255 (504)
+..... .+..++..+...+...|++++|+..++++.+.+ +.+...+..+...+...|++++|...+.++....+. +.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 765421 134556666666666666666666666666543 333455555555555555555555555555554433 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCL 335 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (504)
.++..+...+.+.|++++|+..|+++.+.++. +..++..+...+.+.|++++|...++.+.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 45555555555555555555555555544221 33444444444444455555555444444332 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|...|+++.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444431 22333444444444444444444444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.4e-29 Score=229.83 Aligned_cols=382 Identities=14% Similarity=0.022 Sum_probs=243.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDP 131 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (504)
...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556666666666666665543 3344455555556666666666666666665543 23455566666666666666
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTF 211 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (504)
++|.+.|+++....|. +...+..+...+...|++++|.+.|+ .+
T Consensus 84 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~-----------------------------------~a 127 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYV-----------------------------------SA 127 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHH-----------------------------------HH
T ss_pred HHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------HH
Confidence 6666666665554433 33344444444455555555555444 44
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048258 212 IKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLV 291 (504)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (504)
.+.. +.+...+..+...+...|++++|.+.|+++.+..+. +..++..+...+...|++++|+..|+++.+.++. +..
T Consensus 128 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T 1w3b_A 128 LQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp HHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHH
Confidence 4432 223344455555556666666666666666655433 5566666667777777777777777777665422 455
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLC 371 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (504)
.+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..+|..+..++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 66667777777777777777777766543 2246667777777777777888887777777753 335667777777788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 048258 372 AIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQ 451 (504)
Q Consensus 372 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 451 (504)
+.|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777652 4566677777788888888888888888877652 3345667777888888888888888
Q ss_pred HHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 048258 452 TFLSMEQNGCNP-DSYTSNLILETLVQQGR 480 (504)
Q Consensus 452 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 480 (504)
.++++.+. .| +...+..++.++...|+
T Consensus 361 ~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 361 HYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 88888764 34 45667777777766553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=1e-30 Score=241.76 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=102.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCChhhH
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR---------FEDALDCLSEMVEWGVPPNTITY 363 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 363 (504)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+. .+.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444444455555555555555555444444555555555544443322 34555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 364 NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 364 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 048258 444 GRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQ 477 (504)
Q Consensus 444 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 477 (504)
|+.++|.+++++|.+.|..|+..||..+...+..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.6e-30 Score=239.05 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=170.5
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc---------hHHHH
Q 048258 241 RYLNHVFKDRLVSNV-NSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE---------VHKTR 310 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 310 (504)
.+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+. ++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444444443333 45778889999999999999999999999999999999999998876543 67899
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR 390 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 390 (504)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 048258 391 ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS 443 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (504)
+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..+...
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999988887653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-26 Score=218.96 Aligned_cols=444 Identities=10% Similarity=-0.004 Sum_probs=313.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788899999999999999999999874 689999999999999999999999999998875 4567889999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|...|+++...+. ++......++..+........+.+.+..+......++....................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999988753 344444444444444333333333222211111100000000000000001111111
Q ss_pred HHHHHHHhhCCCC--------C-ChhhHHHHHHHHHc---cCChhhHHHHHHHHHh-----cCC--------CccHHHHH
Q 048258 170 AAILRKMGDRGYL--------P-ESSTFDYTVTCLVT---GLDLNETCGILDTFIK-----RGV--------KPRFSTYL 224 (504)
Q Consensus 170 ~~~~~~~~~~~~~--------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 224 (504)
..+...+...... | +...+......+.. .|++++|+..++++.+ ... +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111111 1 23344444444444 7889999999988887 311 22356777
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA 304 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (504)
.++..+...|++++|...++.+.+..+. ...+..+..++...|++++|...++.+..... .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 8888889999999999999998887655 77888888889999999999999998887643 36677888888899999
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
++++|...++.+.+... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998887643 356678888888889999999999999888763 4466788888889999999999999998
Q ss_pred HHHhCCCC-CC----HHhHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 048258 385 KMQADRIS-PD----IYTFNALIQSFCR---MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 385 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
++.+.... ++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+..++...|++++|...++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88764211 11 3378888888888 899999999999988753 334667788888899999999999999999
Q ss_pred HhcCCCCCh
Q 048258 457 EQNGCNPDS 465 (504)
Q Consensus 457 ~~~~~~~~~ 465 (504)
.+. .|+.
T Consensus 476 ~~~--~~~~ 482 (514)
T 2gw1_A 476 ADL--ARTM 482 (514)
T ss_dssp HHH--CSSH
T ss_pred HHh--cccc
Confidence 885 4543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-26 Score=217.36 Aligned_cols=441 Identities=11% Similarity=-0.030 Sum_probs=329.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|+..++++.+.+ +.+...+..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778889999999999999999999874 789999999999999999999999999999875 3466789999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (504)
+...|++++|...|+++....+..+ .....++..+........+.+.+..+...+..|+...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFND-ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCG-GGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998876533 333334433333333333333332222111111111111111111111111111
Q ss_pred HHHHHHHHhcC---------CCccHHHHHHHHHHHHh---cCCcHHHHHHHHHHHh-----C--CC------CCCHHHHH
Q 048258 205 CGILDTFIKRG---------VKPRFSTYLLLMEALYK---AGRDVEGDRYLNHVFK-----D--RL------VSNVNSYN 259 (504)
Q Consensus 205 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~ 259 (504)
..+...+.... .+.+...+......+.. .|++++|...++++.+ . .+ +.+...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11111111111 12235566666666665 8999999999999988 3 11 12356778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH 339 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (504)
.+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++.+.+... .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 8889999999999999999999887543 78888999999999999999999999988643 36778889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 048258 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 419 (504)
++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999874 4467789999999999999999999999998763 4467788999999999999999999999
Q ss_pred HHHhCCCC-CC----cccHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 420 SMLTLGLR-PD----NFSYSALIKALIK---SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 420 ~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
++.+.... ++ ...+..+..++.. .|++++|...++++.... +.+..++..++.++.+.|++++|.+.++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99874211 11 2278899999999 999999999999999863 446778899999999999999999999999
Q ss_pred HHcC
Q 048258 492 KERG 495 (504)
Q Consensus 492 ~~~~ 495 (504)
.+.+
T Consensus 476 ~~~~ 479 (514)
T 2gw1_A 476 ADLA 479 (514)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8865
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.6e-24 Score=199.08 Aligned_cols=329 Identities=11% Similarity=0.041 Sum_probs=198.0
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 28 LAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
.+...+..+...+ +.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455554443 5567778888888888888888888888887653 4567788888888888888888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcch---hHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC
Q 048258 108 ERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQK---LVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE 184 (504)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 184 (504)
+.+. .+..++..+..++...|++++|.+.|+++....|. +. ..+..+...+..
T Consensus 88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH----------------------
Confidence 7642 35667777888888888888888888888776554 33 344444332111
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048258 185 SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDC 264 (504)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (504)
..+......+...|++++|+..++.+.+.. +.+...+..++.++...|++++|...++.+.+..+. +..++..+..+
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 112223444556677777777777776653 445666777777777777777777777777665433 56777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH------------HHHHhcCCchHHHHHHHHHHHHCCCCcc----HHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLVTFNTL------------ISGHCKDAEVHKTRELLVMLLECGFKPD----KFTF 328 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 328 (504)
+...|++++|+..|+++...... +...+..+ ...+...|++++|...++.+.+.... + ...+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Confidence 77777777777777777655321 22333322 44445555555555555555443211 1 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
..+..++.+.|++++|+..++++.+.. +.+..+|..+..+|...|++++|...++++.+
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444555555555555555555554432 22444555555555555555555555555554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.3e-24 Score=207.69 Aligned_cols=435 Identities=9% Similarity=0.017 Sum_probs=304.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|..+...+.+.|++++|+..|+++.+.+ +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888899999999999999988776 6678888888999999999999999999988765 4567788888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc--chhHHHHHHHHHhcCCChH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT--QKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 167 (504)
+...|++++|...|+.+ .. .|+.. ...+..+...+....|...++++....+.. ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88999999999988633 22 12221 222334455556677888888876643211 1111122333444555555
Q ss_pred HHHHHHHHHhhCCCCCChhhH-HHHHHHHHc--------cCChhhHHHHHHHHHhcCCCcc------HHHHHHHHHHHHh
Q 048258 168 EAAAILRKMGDRGYLPESSTF-DYTVTCLVT--------GLDLNETCGILDTFIKRGVKPR------FSTYLLLMEALYK 232 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 232 (504)
.+...+...... .+....+ ..+...+.. .+++++|+.+++.+.+...... ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 555444333221 2222222 222222222 2478888888888887642211 2356677778888
Q ss_pred cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHH
Q 048258 233 AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTREL 312 (504)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (504)
.|++++|...++.+.+..+. ...+..+...+...|++++|+..++.+.+... .+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999999998886544 67788888888899999999999988887643 3677888888888999999999999
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 048258 313 LVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR-- 390 (504)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 390 (504)
++.+.+... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 998877542 355678888888889999999999999888763 4466788888889999999999999998886542
Q ss_pred ---CCCCHHhHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 391 ---ISPDIYTFNALIQSFCRM----------NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 391 ---~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
.......+.....++... |++++|...|+++.+.. +.+...+..+..++...|++++|.+.++++.
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111122244445666677 89999999999888763 3346678888888999999999999999988
Q ss_pred hc
Q 048258 458 QN 459 (504)
Q Consensus 458 ~~ 459 (504)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=6.1e-24 Score=203.04 Aligned_cols=432 Identities=9% Similarity=0.013 Sum_probs=326.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
....+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34667888899999999999999999999875 5578899999999999999999999999999875 346778899999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCC------CCCChhhHHHHHHHHHc
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG------YLPESSTFDYTVTCLVT 197 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 197 (504)
++...|++++|.+.|+ .....+..... .+..+...+...+|...++.+.... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGA----SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 9999999999999996 44443332222 2334445566678999999886541 22332 33344445
Q ss_pred cCChhhHHHHHHHHHhcCCCccHH-HHHHHHHHH--------HhcCCcHHHHHHHHHHHhCCCCCCH-------HHHHHH
Q 048258 198 GLDLNETCGILDTFIKRGVKPRFS-TYLLLMEAL--------YKAGRDVEGDRYLNHVFKDRLVSNV-------NSYNMV 261 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l 261 (504)
..+.+.+...+...... .+... ....+...+ ...+++++|...++.+.+..+. +. .++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHH
Confidence 55555544433322221 22211 222222221 1235789999999999887654 32 246667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 262 IDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
...+...|++++|...++...+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 778889999999999999999874 457888899999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999864 4467789999999999999999999999998863 445778899999999999999999999998
Q ss_pred HhCCCC-C----CcccHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 422 LTLGLR-P----DNFSYSALIKALIKS----------GRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHD 486 (504)
Q Consensus 422 ~~~~~~-~----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 486 (504)
.+.... + ....+.....++... |++++|...++++.+.. +.+..++..++.++...|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 874211 1 111133445667777 99999999999999863 4467889999999999999999999
Q ss_pred HHHHHHHcC
Q 048258 487 IVKTSKERG 495 (504)
Q Consensus 487 ~~~~~~~~~ 495 (504)
.++++.+..
T Consensus 484 ~~~~al~~~ 492 (537)
T 3fp2_A 484 LFEDSAILA 492 (537)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998865
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=8.8e-24 Score=197.20 Aligned_cols=304 Identities=13% Similarity=0.060 Sum_probs=191.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+.++..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4566778999999999999999999999998765 6689999999999999999999999999999875 4568899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHH------------HHHHhcCChHHHHHHHHHHHhcCCCcchh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNE---ATVRSLV------------HGVFRCLDPHKAFELLIRFMEREPLTQKL 151 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (504)
..+|...|++++|.+.|+++.+.+. .+. ..+..+. ..+...|++++|.+.|+++....|. +..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 9999999999999999999998642 233 4444443 3366666677776666666665443 445
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHH-----
Q 048258 152 VCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLL----- 226 (504)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 226 (504)
++..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|+..++.+.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 56666666666666666666666665432 1245556666666666666666666666665542 2222222222
Q ss_pred -------HHHHHhcCCcHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 227 -------MEALYKAGRDVEGDRYLNHVFKDRLVSN----VNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 227 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
+..+...|++++|...|+.+.+..+. + ...+..+..++.+.|++++|+..++.+.+.. +.+..++..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 34444444444444444444433222 1 1233344444444444444444444443332 113344444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHH
Q 048258 296 LISGHCKDAEVHKTRELLVMLLE 318 (504)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~ 318 (504)
+..+|...|++++|...++.+.+
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.7e-20 Score=169.38 Aligned_cols=333 Identities=9% Similarity=0.016 Sum_probs=206.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45677888888999999999999999988765 5678888888899999999999999999988764 346778888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVC--PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
++...|++++|...|+++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 888999999999999988876320 12333333311000 00111123334444444
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
++|.+.++++..... .+...+..+...+...|++++|+..++.+.+.. +.+...+..++..+...|++++|...++.+
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444443221 133444444444555555555555555544432 334445555555555555555555555555
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCCchHHHH
Q 048258 247 FKDRLVSNVNSYN------------MVIDCFCKVNMMDRATEICREMRDRDIAPNL----VTFNTLISGHCKDAEVHKTR 310 (504)
Q Consensus 247 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 310 (504)
.+..+. +...+. .+...+.+.|++++|...++...+.... +. ..+..+...+...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 544332 222221 2355677778888888888777765422 22 22445666777788888888
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 048258 311 ELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA 372 (504)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (504)
..++...+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8888777653 3366777777778888888888888888887753 3345555555555443
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=2.9e-19 Score=167.95 Aligned_cols=364 Identities=10% Similarity=-0.018 Sum_probs=187.7
Q ss_pred HHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCChhhHH
Q 048258 29 AYLKFQQMSVDQCKPDRFTYNILIHGICR----IGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN----AKRVAEVF 100 (504)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 100 (504)
++..++...+. .++..+..+...|.. .+++++|+..|++..+.| ++..+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34445544442 356666666666666 667777777777766653 45556666666666 66677777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc----CCChHHHHHH
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFR----CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN----NSMASEAAAI 172 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 172 (504)
+.|++..+.| ++..+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777766553 44555555555655 556666666666655543 23344444444443 4455555555
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (504)
|++..+.+ +...+..+...|.. .++.++|.+.+++..+.
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------------------- 216 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS---------------------------------- 216 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------------------------------
Confidence 55544432 33444444444444 44444444444444443
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHCC
Q 048258 249 DRLVSNVNSYNMVIDCFCK----VNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----DAEVHKTRELLVMLLECG 320 (504)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 320 (504)
+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++.++|...|+...+.+
T Consensus 217 -~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~ 289 (490)
T 2xm6_A 217 -G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG 289 (490)
T ss_dssp -T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT
T ss_pred -C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2 33344444444443 445555555555544432 23333344444443 455555555555554432
Q ss_pred CCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCC
Q 048258 321 FKPDKFTFNSMIDCLCRA-----HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG---DVARSLRLFQKMQADRIS 392 (504)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~ 392 (504)
+...+..+...|... +++++|+..+++..+.+ +...+..+...|...| ++++|.+.|++..+.+
T Consensus 290 ---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-- 361 (490)
T 2xm6_A 290 ---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-- 361 (490)
T ss_dssp ---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--
Confidence 233344444444444 55555555555555542 3334444444444433 4555555555555542
Q ss_pred CCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 048258 393 PDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 393 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 460 (504)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|...|++..+.+
T Consensus 362 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 -EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554 455555555555555543 33444555555554 455555666555555543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=3.9e-19 Score=167.02 Aligned_cols=350 Identities=13% Similarity=0.037 Sum_probs=235.7
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcH
Q 048258 9 STRLYNAVIDALVK----SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICR----IGVVDEALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 9 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 80 (504)
++..+..+...|.. .++++.|+..|++..+.+ ++..+..+...|.. .+++++|++.|++..+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677778888888 899999999999998864 67788889999998 899999999999999875 66
Q ss_pred HhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCcchhH
Q 048258 81 YTYTILIDGFCN----AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR----CLDPHKAFELLIRFMEREPLTQKLV 152 (504)
Q Consensus 81 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
..+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 789999999999998875 66778888888887 789999999999998864 5677
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHH
Q 048258 153 CNTLLYRLSN----NSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYL 224 (504)
Q Consensus 153 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (504)
+..+...|.. .++.++|.++|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7888888887 899999999999998764 55667777777775 678888888888877654 344555
Q ss_pred HHHHHHHh----cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHH
Q 048258 225 LLMEALYK----AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKV-----NMMDRATEICREMRDRDIAPNLVTFNT 295 (504)
Q Consensus 225 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (504)
.+...+.. .++.++|..+|++..+.+ +...+..+...+... +++++|+..|++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 56666655 566666666666665543 344555555555544 55555555555555443 2333444
Q ss_pred HHHHHhcCC---chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 296 LISGHCKDA---EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR----AHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 296 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
+...|...| +.++|.+.+++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444443333 3444444444444432 33334444444443 344444444444444432 2333333444
Q ss_pred HHHh----cCCHHHHHHHHHHHHh
Q 048258 369 SLCA----IGDVARSLRLFQKMQA 388 (504)
Q Consensus 369 ~~~~----~g~~~~a~~~~~~~~~ 388 (504)
.|.. .+++++|...|++..+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4433 3444444444444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.1e-20 Score=165.68 Aligned_cols=342 Identities=12% Similarity=0.043 Sum_probs=213.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35567777777888888888888888877654 4456777777888888888888888888877763 235567777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC--cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPL--TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL 201 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (504)
++...|++++|.+.+++.....|. .+...+..+..... ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777788888888888777776541 12222222221100 11233345667777888
Q ss_pred hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 202 NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
++|++.++.+.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777764 445667777777777788888888877777766544 6677777777777777777777777777
Q ss_pred HhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-
Q 048258 282 RDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT- 360 (504)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 360 (504)
.+.... +...+..+ ..+. .......+...+.+.|++++|...++++.+.... +.
T Consensus 215 ~~~~~~-~~~~~~~~-----------------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHY-----------------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHCTT-CHHHHHHH-----------------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HhhCcc-chHHHHHH-----------------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 665321 22222111 0000 1111222344566667777777777766664311 22
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHH
Q 048258 361 ---ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSAL 436 (504)
Q Consensus 361 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l 436 (504)
..+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+. .|+ ...+..+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 123445566667777777777777766642 335556666677777777777777777777664 333 3334444
Q ss_pred HHHH
Q 048258 437 IKAL 440 (504)
Q Consensus 437 ~~~~ 440 (504)
..+.
T Consensus 347 ~~~~ 350 (359)
T 3ieg_A 347 EKAQ 350 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=3.5e-19 Score=169.11 Aligned_cols=132 Identities=6% Similarity=0.002 Sum_probs=89.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-|..+|..++. +.+.|+++.|..+|+++.+.. |.+...|...+..+.+.|++++|..+|+++... .|+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 35667777777 467788888888888888764 567777888888888888888888888888776 35766777666
Q ss_pred HHH-HhcCChhhHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHh
Q 048258 88 DGF-CNAKRVAEVFR----VLEIMKER-NVCP-NEATVRSLVHGVFR---------CLDPHKAFELLIRFME 143 (504)
Q Consensus 88 ~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 143 (504)
... ...|++++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 433 34566666654 66666543 3333 34556666655443 4666667777766666
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=9.8e-19 Score=166.03 Aligned_cols=418 Identities=10% Similarity=0.012 Sum_probs=307.7
Q ss_pred HHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 048258 33 FQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC 112 (504)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 112 (504)
|++.++.+ |-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555444 668889999998 478999999999999999873 5678899999999999999999999999999873
Q ss_pred CChhhHHHHHHHH-HhcCChHHHHH----HHHHHHhc-CCC-cchhHHHHHHHHHhc---------CCChHHHHHHHHHH
Q 048258 113 PNEATVRSLVHGV-FRCLDPHKAFE----LLIRFMER-EPL-TQKLVCNTLLYRLSN---------NSMASEAAAILRKM 176 (504)
Q Consensus 113 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 176 (504)
|+...|..++... ...|+.+.|.+ +|++.+.. +.. .+...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777777533 45678777765 67766543 322 245677777766544 68899999999999
Q ss_pred hhCCCCCChhhHHHHHHHH-------------HccCChhhHHHHHHHHH------hcC---CCcc--------HHHHHHH
Q 048258 177 GDRGYLPESSTFDYTVTCL-------------VTGLDLNETCGILDTFI------KRG---VKPR--------FSTYLLL 226 (504)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 226 (504)
......+....|....... ...+++..|..+++... +.. ++|+ ...+...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832111123333322211 13467888888777632 221 2443 2345554
Q ss_pred HHHHHhc----CCc----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 048258 227 MEALYKA----GRD----VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK-------VNMMD-------RATEICREMRDR 284 (504)
Q Consensus 227 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 284 (504)
+...... ++. ..+...|++++...+. +...|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433322 232 3778899999887554 78888888888875 68987 999999999863
Q ss_pred CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 048258 285 DIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPD-KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITY 363 (504)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (504)
-.+.+...|..++..+.+.|++++|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 22336788999999999999999999999999986322 3 3588888888889999999999999999863 2233333
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC--cccHHHHHHH
Q 048258 364 NILIRS-LCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD--NFSYSALIKA 439 (504)
Q Consensus 364 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~ 439 (504)
...... +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 346899999999999998763 34678899999999999999999999999998632 222 2367778888
Q ss_pred HHhcCChhHHHHHHHHHHhc
Q 048258 440 LIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~~~~ 459 (504)
....|+.+.+..+.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999875
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=3e-20 Score=165.57 Aligned_cols=273 Identities=7% Similarity=-0.046 Sum_probs=152.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHH
Q 048258 6 ISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTI 85 (504)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
.+.++..+......+...|+++.|+.+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 34455556666666666666666666666666554 4445555556666666666666666666666543 334556666
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 86 LIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 86 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|.+.+++.....+. +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 666666666 6666666666666543 223455666666666666666666666666665444 3334444555666666
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcC--------CCccHHHHHHHHHHHHhcCCc
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRG--------VKPRFSTYLLLMEALYKAGRD 236 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 236 (504)
++++|.+.+++...... .+...+..+...+...|++++|...++++.+.. .+....++..++..+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 66666666666555421 234455555555555566666655555555431 012233444555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 237 VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
++|...++++.+..+. +...+..+..++...|++++|.+.+++..+.
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 5555555555444332 3444444555555555555555555554443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=6.5e-20 Score=163.43 Aligned_cols=293 Identities=11% Similarity=-0.005 Sum_probs=212.4
Q ss_pred CChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048258 183 PESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVI 262 (504)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 262 (504)
.+...+......+...|++++|+++++.+.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 355566666777777777777777777777653 334555666667777778888888888877776544 566777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 048258 263 DCFCKVN-MMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRF 341 (504)
Q Consensus 263 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (504)
..+...| ++++|...|++..+... .+...+..+...+...|++++|...++.+.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777888 78888888888776643 25667777777888888888888888887765322 345566677778888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHhHHHHHHHHHccCCHHH
Q 048258 342 EDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADR--------ISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888763 4466778888888888888888888888876531 13345678888888888889999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCCHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL-VQQGRFE 482 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 482 (504)
|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 998888888753 3356678888888888899999999888888742 33566777777777 3455543
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=3.6e-17 Score=161.01 Aligned_cols=419 Identities=15% Similarity=0.130 Sum_probs=291.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
|+.--....++|...|.+.+|+++++++...+ ++.+....+.++.+..+. +..+..++.++.... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 34444557788888888888888888887432 123456666677666665 556666666665522 2 2225
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
...+...|.+++|..+|++... .......+ +-..+++++|.++.+++ ....+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 5667778888888888888631 11222222 22678888888888765 2467888888888899999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
++|.+.|.+. -+...|..++.++.+.|++++|.+.+....+.. +++.....++.+|.+.+++++...+
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----
Confidence 9999888664 267778888888999999999999998877764 3333333588888888887753333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHH
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKF 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 326 (504)
.+ .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+.+. .+..
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 22 235566667888888889999999988874 36888888888889999998888876 2667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFC 406 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 406 (504)
+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|..+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 8888888888888888888766542 2356667788889999999999999998887654 444557777777666
Q ss_pred cc--CCHHHHHHHHHHHHhCCCCC------CcccHHHHHHHHHhcCChhHHHHH-------------HHHHHhcCCCCCh
Q 048258 407 RM--NKIEKAEKAFFSMLTLGLRP------DNFSYSALIKALIKSGRFDEAKQT-------------FLSMEQNGCNPDS 465 (504)
Q Consensus 407 ~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~~~~~~~~~~~ 465 (504)
+. ++..++.++|..-.. ++| +...|..++..|.+.|+++.|... |+..... ..+.
T Consensus 1326 Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~ 1401 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANV 1401 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccH
Confidence 53 345555555543332 222 355688888889999999988832 2222221 3466
Q ss_pred hhHHHHHHHHHhcC---------------CHHHHHHHHH
Q 048258 466 YTSNLILETLVQQG---------------RFEEAHDIVK 489 (504)
Q Consensus 466 ~~~~~l~~~~~~~g---------------~~~~a~~~~~ 489 (504)
..|...+..|...+ +++.+.+++.
T Consensus 1402 elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1402 ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77777777776666 6666666665
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=1.1e-19 Score=164.56 Aligned_cols=304 Identities=13% Similarity=0.017 Sum_probs=171.1
Q ss_pred cCCChHHHHH-HHHHHhhCCCC-C--ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 162 NNSMASEAAA-ILRKMGDRGYL-P--ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 162 ~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
..|++++|.+ .+++....... | +...+..+...+...|++++|+..++++.+.. +.+..++..++.++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466777776 66655433211 1 34567777778888888888888888888764 456677788888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
+|...++++.+..+. +..++..+..++...|++++|+..++++...... +...+..+... .. ..
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~ 179 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA 179 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh
Confidence 888888888776644 6777888888888888888888888888776432 22222111000 00 00
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048258 318 ECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPP-NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIY 396 (504)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 396 (504)
.+ ...+..+. .+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+.. +.+..
T Consensus 180 ----~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 180 ----GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ----cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 00 00011111 1225555666666666655542111 34555556666666666666666666655542 23345
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----------Chh
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP----------DSY 466 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~ 466 (504)
.+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+..... ...
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 55666666666666666666666665542 2234455566666666666666666666655421000 135
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 467 TSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 467 ~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
++..++.++...|++++|..++++
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHhCChHhHHHhHHH
Confidence 566666666666666666666554
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=5.9e-20 Score=166.43 Aligned_cols=231 Identities=12% Similarity=0.010 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (504)
+..+...+.+.|++++|+..|+++.+..+ .+..++..+...+...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444321 133344444444444444444444444444332 1234444444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhH----------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHhHHH
Q 048258 338 AHRFEDALDCLSEMVEWGVPPNTITY----------------NILIRSLCAIGDVARSLRLFQKMQADRISP-DIYTFNA 400 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 400 (504)
.|++++|+..++++.+.... +...+ ..+...+ ..|++++|...++++.+..... +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555555443211 11111 1233334 8899999999999998863111 4788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 048258 401 LIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGR 480 (504)
Q Consensus 401 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 480 (504)
+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..++.++.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999863 3456788999999999999999999999999863 4467789999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 048258 481 FEEAHDIVKTSKER 494 (504)
Q Consensus 481 ~~~a~~~~~~~~~~ 494 (504)
+++|...++++.+.
T Consensus 301 ~~~A~~~~~~al~~ 314 (368)
T 1fch_A 301 HREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=3.4e-16 Score=154.23 Aligned_cols=387 Identities=12% Similarity=0.082 Sum_probs=292.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVR 119 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
..++.--...+++|...|.+.+|+++++++.-.+ +..+...-+.++.+..+. +..+..+..++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 3455556778889999999999999999998432 113445666677776666 446666665555422 1 34
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC
Q 048258 120 SLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGL 199 (504)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (504)
.+...+...|.+++|.++|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 47788889999999999999962 12222333332 6788999999988662 5788999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 200 DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
++++|++.|.+. .+...|..++.++.+.|++++|.+++....+.... +...+.++.+|.+.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e--~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc--ccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 47788999999999999999999999988876533 333345888999999988644442
Q ss_pred HHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048258 280 EMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN 359 (504)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (504)
. .++...+..+...|...|++++|...|... ..|..+..++.+.|++++|.+.+++. .+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 2 335667778999999999999999999985 37899999999999999999999987 36
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 360 TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+... +-....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 689999999999999999998877653 3466677799999999999999999998888653 2334567667777
Q ss_pred HHhc--CChhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHH
Q 048258 440 LIKS--GRFDEAKQTFLSMEQNGCNP------DSYTSNLILETLVQQGRFEEAHDIV 488 (504)
Q Consensus 440 ~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 488 (504)
+.+. ++..++.+.|..-.. ++| +...|..+.-.|.+.|+++.|...+
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7664 334444444443222 333 4567899999999999999998443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=1.2e-18 Score=153.60 Aligned_cols=283 Identities=11% Similarity=0.101 Sum_probs=124.6
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 21 VKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
-+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..+++++...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 36678999999999983 3358999999999999999999999653 57778999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCC
Q 048258 101 RVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRG 180 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 180 (504)
+.++...+. .+++.+...++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 45677888999999999999998877742 35568999999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHH
Q 048258 181 YLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNM 260 (504)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 260 (504)
..|..++.++.+.|++++|.+.+.++ .++.++..++.+|...|+++.|...... +...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 47889999999999999999999887 2678899999999999999999654443 2234555567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC--CchHHHHHHHHHHHHCCCCc------cHHHHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKD--AEVHKTRELLVMLLECGFKP------DKFTFNSMI 332 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~ 332 (504)
++..|.+.|.+++|+.+++...... +.....|+-+.-+|++- ++..+.++.|.. +.+++| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 8888999999999999999887664 33556677776666653 333344443321 112222 345677777
Q ss_pred HHHHhcCCHHHHHHH
Q 048258 333 DCLCRAHRFEDALDC 347 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~ 347 (504)
..|...++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 778888888877663
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=2.4e-19 Score=162.07 Aligned_cols=276 Identities=12% Similarity=-0.014 Sum_probs=150.4
Q ss_pred hhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048258 185 SSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDC 264 (504)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (504)
...+......+...|++++|+..++++.+.. +.+..++..++..+...|++++|...|+++.+..+. +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3446666777777777777777777777653 445666777777777777777777777777665543 56666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDA 344 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (504)
+...|++++|+..++++.+.... +...+..+. .....+..+...+...|++++|
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC--------------------------------------------CCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHH
Confidence 77777777777777776654211 111111110 0111222334445555555555
Q ss_pred HHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 345 LDCLSEMVEWGVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 345 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+..++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++++
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544211 134455555555555556666665555555432 23445555566666666666666666666555
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048258 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCN-----------PDSYTSNLILETLVQQGRFEEAHDIVKT 490 (504)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 490 (504)
.. +.+..++..+..+|...|++++|...++++.+.... .+..+|..+..++...|+.+.+.+..++
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 42 222445555666666666666666666665542100 0245566666667677777666666554
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=6.8e-19 Score=159.15 Aligned_cols=267 Identities=7% Similarity=-0.073 Sum_probs=160.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555666666666666666666665543 3355566666666666666666666666666553 2245556666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcc---------hhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC-CChhhHHHHHHH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQ---------KLVCNTLLYRLSNNSMASEAAAILRKMGDRGYL-PESSTFDYTVTC 194 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 194 (504)
+...|++++|.+.++++....|... ...+..+...+...|++++|.+.|+++...... ++...+..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 6666666666666666655433211 112223455666677777777777776654321 145566667777
Q ss_pred HHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048258 195 LVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRA 274 (504)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (504)
+...|++++|++.++++.+.. +.+..++..++.++...|++++|...++++.+..+. +..++..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777776653 445667777777777777777777777777766543 566677777777777777777
Q ss_pred HHHHHHHHhCCCC-----------CChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 275 TEICREMRDRDIA-----------PNLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 275 ~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
...|++..+.... .+...|..+..++...|+.+.+..+...
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777776553211 1245677777777777777776665543
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=3.1e-17 Score=153.86 Aligned_cols=385 Identities=11% Similarity=-0.015 Sum_probs=229.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcC----
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGL--------GYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERN---- 110 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 110 (504)
.....|+.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888899999999999998886542 112345678888888999999999998888776531
Q ss_pred --CC-CChhhHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCcchhHHHHHHHH---HhcCCChHHHHHHHHHHhhCCCC
Q 048258 111 --VC-PNEATVRSLVHGVFRC--LDPHKAFELLIRFMEREPLTQKLVCNTLLYR---LSNNSMASEAAAILRKMGDRGYL 182 (504)
Q Consensus 111 --~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 182 (504)
.. ....++..+..++... +++++|.+.|++..+..|. +...+..+..+ +...++.++|++.+++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 01 1234555555555443 4688888888888887765 33444433333 34456777788877777654321
Q ss_pred CChhhHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHH
Q 048258 183 PESSTFDYTVTCLVT----GLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSY 258 (504)
Q Consensus 183 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 258 (504)
+...+..+...+.. .+++++|.+.+++..... +.+..++..++..+...|++++|...+.++.+..+. +..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 34444444433333 456777888887777664 445667777788888888888888888888776554 55666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 048258 259 NMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRA 338 (504)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (504)
..+..+|...+... .... ...... .....+..+.|...++...+.. +.+...+..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~~~~~~------~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-ENGMYG------KRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------C------HHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-HHHHHH------HHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 66555543221100 0000 000000 0111233567777777776653 23455677778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 048258 339 HRFEDALDCLSEMVEWGVPPNTI--TYNILIR-SLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAE 415 (504)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 415 (504)
|++++|+..|++..+....+... .+..+.. .....|+.++|+..|++..+. .|+..... +....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHH
Confidence 88888888888888764332221 2222222 234678888898888888874 44433221 2234455
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
+++++.++.. +.+..+|..+..+|...|++++|++.|++.++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666666653 4457788889999999999999999999988754
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=6.2e-17 Score=151.76 Aligned_cols=385 Identities=11% Similarity=-0.014 Sum_probs=237.5
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----
Q 048258 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKER-----N---VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMERE---- 145 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 145 (504)
.....|+.+...+...|++++|++.|++..+. + .+....++..+..+|...|++++|...+++.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888999999999999887642 1 11234567888888999999999998888876531
Q ss_pred -C--CcchhHHHHHHHHHhc--CCChHHHHHHHHHHhhCCCCCChhhHHHHHHH---HHccCChhhHHHHHHHHHhcCCC
Q 048258 146 -P--LTQKLVCNTLLYRLSN--NSMASEAAAILRKMGDRGYLPESSTFDYTVTC---LVTGLDLNETCGILDTFIKRGVK 217 (504)
Q Consensus 146 -~--~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 217 (504)
+ .....++.....++.. .+++++|.+.|++....... +...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1123445444444443 45678888888887765321 33344443333 344567777888887777764 3
Q ss_pred ccHHHHHHHHHHHHh----cCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 048258 218 PRFSTYLLLMEALYK----AGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTF 293 (504)
Q Consensus 218 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (504)
.+...+..+...+.. .+++++|.+.++++....+. +..++..+...+...|++++|+..+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 345555555544443 35667788888877776544 6677777788888888888888888887766422 44555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
..+...|...+... .... ...........+.++.|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 55555443211110 0000 0000001112234678888998888764 44667889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH--hHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 048258 374 GDVARSLRLFQKMQADRISPDIY--TFNALIQ-SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
|++++|...|+++.+....+... .+..+.. .....|++++|+..|++.++. .|+...... ..+.+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 99999999999998864333221 2233332 235789999999999999985 555432222 234456
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 451 QTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+++++....+ +.+..++..++.+|...|++++|.+.++++++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6667766653 4577899999999999999999999999999874
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=4.2e-18 Score=151.47 Aligned_cols=279 Identities=8% Similarity=-0.076 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...+......+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677778888888888888888887665 5567777778888888888888888888887764 446677777888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHH-HH-HHhcCCCh
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTL-LY-RLSNNSMA 166 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~ 166 (504)
.+...|++++|.+.++++.+.... +...+..+.... +.......+ .. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888888888888888888765321 222222220000 000000001 11 13344445
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHV 246 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (504)
++|.+.++++..... .+...+..+...+...|++++|.+.++.+.+.. +.+...+..++..+...|++++|...++.+
T Consensus 155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555443321 134445555555555555555555555555442 334455555555666666666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------ChhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 247 FKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAP-----------NLVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
.+..+. +...+..+..++...|++++|...+++........ +..++..+..++...|+.++|..+++.
T Consensus 233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 554432 45555556666666666666666666555442211 244555566666666666666665543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=7.2e-18 Score=149.96 Aligned_cols=278 Identities=10% Similarity=-0.017 Sum_probs=159.9
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+......+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345555666666677777777777666653 335566666777777777777777777777665543 566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHH--HHHhcCCHHH
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMID--CLCRAHRFED 343 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 343 (504)
...|++++|+..++++...... +...+..+.... |+......+.. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777665322 222222220000 00111111111 2445556666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 344 ALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666665542 2345556666666666666666666666665542 33455666666666666666666666666665
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP-----------DSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
.. +.+...+..+..++...|++++|.+.++++....... +..++..++.++...|++++|..++++.
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 42 2234556666666666677777777766666532110 3456666777777777777777766544
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=2e-17 Score=145.90 Aligned_cols=269 Identities=14% Similarity=0.079 Sum_probs=137.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
+++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 4456999999999999999999999965 357779999999999999999999988877764 55678899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999988884 367789999999999999999999999976 47899999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 168 EAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
+|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++|..+++..+
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999998 2789999999999999999999655443 22344445678899999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------ChhhHHHHHHHHhcCCchHHHHHHH
Q 048258 248 KDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR-DIAP------NLVTFNTLISGHCKDAEVHKTRELL 313 (504)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (504)
... +.....|+-+..+|++- .+++..+.++....+ +++| +...|.-+...|...++++.|...+
T Consensus 235 ~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 776 44777888888777765 345444444433322 2333 5678889999999999999887643
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=3.2e-17 Score=141.81 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=191.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPD--RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK 94 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (504)
++-....|+++.|+..++.+... .|+ ......+.++|...|+++.|+..++.. .+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 46677789999999999887654 343 345566788999999999998866542 3677888888888899999
Q ss_pred ChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCP-NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL 173 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 173 (504)
+.++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998776434 455677777888999999999998887 246677888888899999999999999
Q ss_pred HHHhhCCCCCChhhH---HHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 174 RKMGDRGYLPESSTF---DYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 174 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
+++.... |+.... ...+..+...|++++|..+|+++.+. .+.+...+..++.++.+.|++++|...+++++...
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9887753 443211 12233444557888888888888877 35677778888888888888888888888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 048258 251 LVSNVNSYNMVIDCFCKVNMMDR-ATEICREMRDRD 285 (504)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 285 (504)
+. ++.++..++..+...|+.++ +.++++++.+..
T Consensus 231 p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55 77777777877878887765 567777777663
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=143.55 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=212.4
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPR--FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
++-....|++..|+...+.+... .|+ ......+.++|...|+++.|...++. ...|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999998876554 343 34557778999999999999876644 23456778888899999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 048258 270 MMDRATEICREMRDRDIAP-NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCL 348 (504)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 348 (504)
+.++|++.++++...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876434 556677777899999999999999987 457888999999999999999999999
Q ss_pred HHHHHCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 349 SEMVEWGVPPNTITY---NILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 349 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...|+++++..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999863 443211 22334444568999999999999987 36678899999999999999999999999999863
Q ss_pred CCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048258 426 LRPDNFSYSALIKALIKSGRFDE-AKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHD 486 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 486 (504)
+-+..++..++..+...|+.++ +.++++++.+. .|+..... ....+.+.++++..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~---d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK---EYRAKENDFDRLVL 286 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH---HHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH---HHHHHHHHHHHHHH
Confidence 3357788899999999999876 57899999884 56544322 23444455555544
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=2.5e-16 Score=145.51 Aligned_cols=306 Identities=12% Similarity=0.026 Sum_probs=170.9
Q ss_pred ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh---hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHH
Q 048258 165 MASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL---NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (504)
+.++|...|++....|. ...+..+...|...+.. ..+.+.+......| +......+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 34455555555444331 12333444444433322 22344444444333 23445555666666665544444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----CchHHHHHHHH
Q 048258 242 YLNHVFKDRLVSNVNSYNMVIDCFCKVN---MMDRATEICREMRDRDIAPNLVTFNTLISGHCKD----AEVHKTRELLV 314 (504)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~ 314 (504)
....+.+.-...++..+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 3333322212223336666777777777 777777777777776532 444445555555543 57777777777
Q ss_pred HHHHCCCCccHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 048258 315 MLLECGFKPDKFTFNSMIDC-L--CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-----DVARSLRLFQKM 386 (504)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~ 386 (504)
... . -++..+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|...|++.
T Consensus 242 ~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 766 2 244455555554 3 35677788888888777764 5556666666665 44 778888887777
Q ss_pred HhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHh
Q 048258 387 QADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 458 (504)
. . .+......|...|.. ..++++|..+|++..+.| +......+...|.. ..++++|..+++...+
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 6 3 255566666666654 337788888888877765 33445556666653 3467788888888777
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 459 NGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 459 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|. ++.......+......++..+|.++.++..+
T Consensus 387 ~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 387 QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 652 2222222222222233455666666666544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=1e-16 Score=148.07 Aligned_cols=347 Identities=9% Similarity=-0.077 Sum_probs=159.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 15 AVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVV---DEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.+...+.+.|++++|+..|++..+.+ ++.++..+...|...|+. ++|+.+|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677778888888888888887665 334455566666667777 7888888887753 5556666666444
Q ss_pred hcC-----ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 92 NAK-----RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHK---AFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 92 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
..+ ++++|...|++..+.|. ...+..+...|...+..++ +.+.+......+ ....+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 444 67788888888877653 2355566666665544332 333333332222 223334444444444
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---CcHHHH
Q 048258 164 SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAG---RDVEGD 240 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~ 240 (504)
+.++++... ...+.+.-...++..+..+...|...| +.++|.
T Consensus 155 ~~~~~~~~~-----------------------------------a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 155 GTYDQHLDD-----------------------------------VERICKAALNTTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp TCGGGGHHH-----------------------------------HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcccCHHH-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 433222222 111111111111224444444444444 445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--hcCCchHHHHHHH
Q 048258 241 RYLNHVFKDRLVSNVNSYNMVIDCFCKV----NMMDRATEICREMRDRDIAPNLVTFNTLISG-H--CKDAEVHKTRELL 313 (504)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~ 313 (504)
+.|++..+.++. +...+..+...|... +++++|+..|++.. .| +...+..+... + ...+++++|...|
T Consensus 200 ~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 200 KQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 555555544432 333333344444332 45555555555554 22 33344444443 2 3355555666666
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 048258 314 VMLLECGFKPDKFTFNSMIDCLCRAH-----RFEDALDCLSEMVEWGVPPNTITYNILIRSLCA----IGDVARSLRLFQ 384 (504)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 384 (504)
++..+.| +...+..+...|. .| ++++|+..|++.. . -+...+..+...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 5555543 3444444444444 33 5666666666555 2 244445555555544 225666666666
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 048258 385 KMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 425 (504)
+..+.| +......|...|.. ..++++|..+|+...+.|
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 665544 22333444444442 335666666666666654
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=6.2e-16 Score=127.85 Aligned_cols=198 Identities=14% Similarity=0.006 Sum_probs=122.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
|+++..+..+...+.+.|++++|+..|+++.+.+ |.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 5677778888888888888888888888888765 6677788888888888888888888888887764 4466777777
Q ss_pred HHHHHhc-----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHH
Q 048258 87 IDGFCNA-----------KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNT 155 (504)
Q Consensus 87 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
..++... |++++|+..|++..+..+ .+...+..+..++...|++++|.+.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 667777776666666532 244555666666666666666666666666554 34555555
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 156 LLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 156 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
+..++...|++++|...|++..+... .+...+..+...+...|++++|+..+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55556666666666666665554321 1334444445555555555555554443
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=3.6e-13 Score=128.47 Aligned_cols=427 Identities=7% Similarity=-0.027 Sum_probs=268.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCcHHh
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV---VDEALRLVKQMEGLG-YAPNVYT 82 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~ 82 (504)
+-|..+|..++..+.+.++++.+..+|+++...- |.....|...+..-.+.|+ ++.+..+|++..... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4577889999999999999999999999998764 7778888888888888888 999999999998763 1378888
Q ss_pred HHHHHHHHHhcCCh--------hhHHHHHHHHHHc-CC-CCC-hhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRV--------AEVFRVLEIMKER-NV-CPN-EATVRSLVHGVFR---------CLDPHKAFELLIRFM 142 (504)
Q Consensus 83 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 142 (504)
|...+....+.++. +.+.++|+..... |. .++ ...|...+..... .++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766555443 3345778877653 54 443 4567666655432 345677888888888
Q ss_pred hcCCCcchhHHHHHHHHHhc-------------CCChHHHHHHHHHHhh--CCC---CCC--------------------
Q 048258 143 EREPLTQKLVCNTLLYRLSN-------------NSMASEAAAILRKMGD--RGY---LPE-------------------- 184 (504)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~--~~~---~~~-------------------- 184 (504)
......-..+|......-.. ...++.|...+.++.. .++ .|.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 64222222344322211111 1122333444443211 011 010
Q ss_pred hhhHHHHHHHHHccC-------ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHH-HHHHHHHhCCCCCCHH
Q 048258 185 SSTFDYTVTCLVTGL-------DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGD-RYLNHVFKDRLVSNVN 256 (504)
Q Consensus 185 ~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 256 (504)
...|...+..--..+ ....+..+|++++.. .+.....+...+..+...|+.++|. .+|++.....+ .+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHH
Confidence 022333333222221 123345667777765 3556777888888788888888886 88888876543 3666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHhcCCchHHHHHHHHH
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRD---------IAPN------------LVTFNTLISGHCKDAEVHKTRELLVM 315 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (504)
.+...+....+.|++++|.++|+.+.... ..|+ ...|...+....+.|..+.|..+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67777777778888888888888776531 0121 23566666666777788888888888
Q ss_pred HHHCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 048258 316 LLECGFKPDKFTFNSMIDCLCRA-HRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISP- 393 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~- 393 (504)
+.+.........|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.......+
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 87651111233333333333333 4478888888888775 44466666777777777888888888888887753211
Q ss_pred -CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 394 -DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 394 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
....|...+..-...|+.+.+..+.+++.+. .|+......+++-
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 3446777777777788888888888888875 4554444444443
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-15 Score=130.67 Aligned_cols=224 Identities=9% Similarity=0.009 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HHhH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APN----VYTY 83 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 83 (504)
+..|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|+..+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556677777777777777777777777665 5667777777777777777777777777665421 011 4566
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN 163 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (504)
..+...+...|++++|...|+++.+.. |+. ..+...|++++|.+.+++.....+. ....+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 677777777777777777777777652 332 2344556666666666666554332 334455555555555
Q ss_pred CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHH
Q 048258 164 SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYL 243 (504)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (504)
|++++|...+++...... .+...+..+..++...|++++|+..++...+.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555544321 133344444444444444444444444444432 223334444444444444444444444
Q ss_pred HHHH
Q 048258 244 NHVF 247 (504)
Q Consensus 244 ~~~~ 247 (504)
+.+.
T Consensus 231 ~~a~ 234 (258)
T 3uq3_A 231 DAAR 234 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.6e-15 Score=129.69 Aligned_cols=225 Identities=12% Similarity=0.062 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhH
Q 048258 220 FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIA--PN----LVTF 293 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 293 (504)
...+..++..+...|++++|...++.+.+.. .+...+..+..++...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4556667777777777777777777776665 46666777777777777777777777766554211 11 3555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 048258 294 NTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI 373 (504)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (504)
..+...+...|++++|...++.+.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 66666666666666666666666553 2332 23444555666666666665542 22344555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 048258 374 GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 374 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666665542 3345555666666666666666666666665542 223445555566666666666666666
Q ss_pred HHHHh
Q 048258 454 LSMEQ 458 (504)
Q Consensus 454 ~~~~~ 458 (504)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=159.61 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=109.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhh---hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMS---VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTIL 86 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
..+|+++|.+|++.|++++|..+|+.|. ..|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4579999999999999999999998875 4478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 87 IDGFCNAKRV-AEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 87 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999985 7899999999999999999999988865444
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=157.86 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=95.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhH
Q 048258 322 KPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE---WGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTF 398 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 398 (504)
..-..+|+++|++|++.|++++|..+|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456788888888888888888888877653 467788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 399 NALIQSFCRMNK-IEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 399 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888888876 46778888888888888888888877754443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.2e-15 Score=126.12 Aligned_cols=207 Identities=15% Similarity=0.085 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048258 219 RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLIS 298 (504)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (504)
+...+..+...+...|++++|...|+++++..+. +...+..+..++.+.|++++|+..+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444445555555555555555555555544433 4445555555555555555555555555544321 3344444444
Q ss_pred HHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 299 GHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
.+...+. .. .. .....|++++|+..+++..+.. +.+...+..+..++...|++++
T Consensus 82 ~~~~~~~------------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 82 AYVALYR------------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHH------------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhh------------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHH
Confidence 4444300 00 00 0001144444444444444432 2233344444444444444444
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 048258 379 SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLS 455 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (504)
|+..|+++.+.. .+...+..+..++...|++++|...|+++++.. +.+...+..+..++...|++++|+..+++
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444433 344444444444444444444444444444431 11233344444444444555554444443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=5.1e-15 Score=127.67 Aligned_cols=200 Identities=10% Similarity=-0.021 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HHhHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--VYTYTILI 87 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 87 (504)
+..+......+...|+++.|+..|+++.+.. +.+...+..+...+...|++++|++.+++..+.+..++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566677777777888887777777664 44555677777777777777777777777776321111 22366677
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
..+...|++++|++.|++..+... .+..++..+...+...|++++|.+.+++.....|. +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776532 24456666666666777777777666666655443 3344444442222333566
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC---hhhHHHHHHHHHh
Q 048258 168 EAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD---LNETCGILDTFIK 213 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 213 (504)
+|.+.|++..+.... +...+..+...+...++ +++|...+++..+
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 666666555543211 23334444444444444 4444444444443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=7.2e-15 Score=131.35 Aligned_cols=230 Identities=7% Similarity=-0.021 Sum_probs=160.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV-VDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
...|..+...+.+.|++++|+..|+++.+.+ +.+..+|+.+..++...|+ +++|+..|+++.+.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3557777788888888888888888888775 5577888888888888886 888888888888765 446778888888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhc-CCChH
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSN-NSMAS 167 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 167 (504)
++...|++++|+..|+++.+.+. -+...|..+..++...|++++|++.+++++...|. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888887753 36677888888888888888888888888887765 66677777777777 55546
Q ss_pred HH-----HHHHHHHhhCCCCCChhhHHHHHHHHHccC--ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC------
Q 048258 168 EA-----AAILRKMGDRGYLPESSTFDYTVTCLVTGL--DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAG------ 234 (504)
Q Consensus 168 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 234 (504)
+| ++.|++....... +...|..+...+...| ++++|++.+..+ +. .+.+...+..++.++.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 3666666554221 4445555555565555 456666666555 22 2334455555555555543
Q ss_pred ---CcHHHHHHHHHH
Q 048258 235 ---RDVEGDRYLNHV 246 (504)
Q Consensus 235 ---~~~~a~~~~~~~ 246 (504)
..++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 135555555555
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.71 E-value=8e-13 Score=126.09 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC---hhhHHHH
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR---VAEVFRV 102 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 102 (504)
..+.+..|++.+..+ +.|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445566677777666 779999999999999999999999999999987 46678889998888888888 9999999
Q ss_pred HHHHHHcC-CCCChhhHHHHHHHHHhcCCh--------HHHHHHHHHHHhc-CC-Cc-chhHHHHHHHHHhc--------
Q 048258 103 LEIMKERN-VCPNEATVRSLVHGVFRCLDP--------HKAFELLIRFMER-EP-LT-QKLVCNTLLYRLSN-------- 162 (504)
Q Consensus 103 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~-------- 162 (504)
|++..... ..|+...|...+....+.++. +...++|+..+.. |. .+ ....|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99999874 137888888888776666554 3344777776653 33 22 34577777765432
Q ss_pred -CCChHHHHHHHHHHhhC
Q 048258 163 -NSMASEAAAILRKMGDR 179 (504)
Q Consensus 163 -~~~~~~a~~~~~~~~~~ 179 (504)
+++.+.+..+|+..+..
T Consensus 206 eq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHHHHHHHHhC
Confidence 34567788999998863
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=5.7e-14 Score=121.04 Aligned_cols=224 Identities=11% Similarity=0.024 Sum_probs=164.9
Q ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048258 219 RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK----VNMMDRATEICREMRDRDIAPNLVTFN 294 (504)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (504)
++.++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677777788888888888888888887732 55667777777777 888888888888877764 566777
Q ss_pred HHHHHHhc----CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 048258 295 TLISGHCK----DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR----AHRFEDALDCLSEMVEWGVPPNTITYNIL 366 (504)
Q Consensus 295 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (504)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 788888888888777764 56667777777777 778888888888777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 048258 367 IRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIK 438 (504)
Q Consensus 367 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 438 (504)
...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776 778888888888777653 45566677777777 778888888887777753 2455666777
Q ss_pred HHHh----cCChhHHHHHHHHHHhcC
Q 048258 439 ALIK----SGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 439 ~~~~----~g~~~~a~~~~~~~~~~~ 460 (504)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 777788888887777754
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.7e-14 Score=124.40 Aligned_cols=237 Identities=8% Similarity=-0.012 Sum_probs=180.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN--EATVRSLV 122 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 122 (504)
+..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.+.+..++ ...+..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788889999999999999998874 34566888888999999999999999999988432122 22478888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
..+...|++++|.+.|++.....|. +..++..+...+...|++++|...|++..... +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765 56788888899999999999999999988762 224556666663444455899
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhCCC-CCC------HHHHHHHHHHHHhcCCHH
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR---DVEGDRYLNHVFKDRL-VSN------VNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~~ 272 (504)
+|++.++.+.+.. +.+...+..+...+...++ +++|...++++.+... .|+ ..++..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998888864 4446777778888888787 7778888887765421 112 246667777888888888
Q ss_pred HHHHHHHHHHhCC
Q 048258 273 RATEICREMRDRD 285 (504)
Q Consensus 273 ~a~~~~~~~~~~~ 285 (504)
+|.+.|++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 8888888887764
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.3e-13 Score=118.75 Aligned_cols=224 Identities=11% Similarity=-0.023 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----CCchHHHHHHHHHHHHCCCCccHHHHH
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCK----DAEVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
++.++..+...+...|++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444555555555555666655555555522 33445555555555 555555655555555543 444555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 048258 330 SMIDCLCR----AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNAL 401 (504)
Q Consensus 330 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 401 (504)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555566665555555542 44455555555555 555566665555555543 33444455
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048258 402 IQSFCR----MNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473 (504)
Q Consensus 402 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 473 (504)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555554 555566665555555542 23444555555555 555556665555555532 1444555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 048258 474 TLVQ----QGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 474 ~~~~----~g~~~~a~~~~~~~~~~~ 495 (504)
+|.. .+++++|.++++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555555655555555543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=6.2e-14 Score=116.97 Aligned_cols=203 Identities=9% Similarity=-0.035 Sum_probs=121.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.++..|..+...+...|+++.|+..|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 345566667777777777777777777776654 4456667777777777777777777777776653 33556666677
Q ss_pred HHHHhc-CChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC
Q 048258 88 DGFCNA-KRVAEVFRVLEIMKERNVCPN-EATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 88 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (504)
..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|.+.+++.....+. +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 777777 777777777777766221222 345566666666666666666666666655443 34445555555555566
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHh
Q 048258 166 ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIK 213 (504)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (504)
+++|...+++........+...+..+...+...|+.+.+...++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666665555554432212333444444444445555555555554443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=6.6e-15 Score=127.19 Aligned_cols=246 Identities=9% Similarity=-0.009 Sum_probs=134.1
Q ss_pred cCChhhHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048258 198 GLDLNETCGILDTFIKRGV---KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRA 274 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (504)
.|++++|++.++.+.+... +.+...+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666555421 113455666666666677777777777666665443 566666666677777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 275 TEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
+..|++..+..+ .+..++..+...+...|++++|...++.+.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777776666532 245566666666666666666666666665542 22222233333445556666777766665554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 048258 355 GVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRIS---PDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF 431 (504)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 431 (504)
. +++...+ .++..+...++.++|...++++...... .+...+..+..+|...|++++|...|+++.+. .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 2 2233333 3455555566666666666666543110 01345555666666666666666666666653 2321
Q ss_pred cHHHHHHHHHhcCChhHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTF 453 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~ 453 (504)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222334445555555555443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=5.9e-14 Score=119.44 Aligned_cols=203 Identities=12% Similarity=-0.010 Sum_probs=140.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4556666777777777777777777776653 34566677777777777777777777777766532 355666677777
Q ss_pred HHhcCChHHHHHHHHHHHh--cCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh
Q 048258 125 VFRCLDPHKAFELLIRFME--REPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN 202 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (504)
+...|++++|.+.++++.. ..+ .....+..+...+...|++++|.+.+++...... .+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP-ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777766 222 2445666677777777777777777777765432 24566777777777778888
Q ss_pred hHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC
Q 048258 203 ETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV 252 (504)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (504)
+|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+..+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8888887777653 445666777777777888888888888887766543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=7.8e-14 Score=124.66 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC-hHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM-ASEAAAILRKMGDRGYLPESSTFDYTVTCL 195 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (504)
.+..+..++...|++++|++.+++++...|. +..+|+.+..++...|+ +++|+..|++....... +...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4444555555566666666666666655544 44555555555555564 66666666665554222 444555555555
Q ss_pred HccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 048258 196 VTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCK-VNMMDRA 274 (504)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 274 (504)
...|++++|+..+++++... +.+...+..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 55666666666666665553 334556666666666666666666666666665544 55566666666655 4443444
Q ss_pred -----HHHHHHHHhCCCCCChhhHHHHHHHHhcCC--chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC--------
Q 048258 275 -----TEICREMRDRDIAPNLVTFNTLISGHCKDA--EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH-------- 339 (504)
Q Consensus 275 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 339 (504)
+..+++.....+. +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 3555555554322 4455555555555555 455666555555 22 2234455555555555542
Q ss_pred -CHHHHHHHHHHH
Q 048258 340 -RFEDALDCLSEM 351 (504)
Q Consensus 340 -~~~~a~~~~~~~ 351 (504)
..++|+.+++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 135566666665
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=1.1e-14 Score=123.29 Aligned_cols=202 Identities=11% Similarity=0.042 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..|..+...+...|+++.|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444455555555555555555555555443 3345555555555555555555555555555442 2244455555555
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++....+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------------- 157 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN---------------------- 157 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT----------------------
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----------------------
Confidence 555555555555555555442 123444444555555555555555555554444332
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 170 AAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
+...+..+...+...|++++|+..++.+.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 158 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 158 --------------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp --------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 33344444455555555555555555554442 233445555556666666666666666666554
Q ss_pred CC
Q 048258 250 RL 251 (504)
Q Consensus 250 ~~ 251 (504)
.+
T Consensus 223 ~p 224 (243)
T 2q7f_A 223 QP 224 (243)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=1.4e-13 Score=117.08 Aligned_cols=199 Identities=9% Similarity=0.010 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
..+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 44555555555566666666666555554332 445555555555566666666666655554422 1344444455555
Q ss_pred hcCCchHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 048258 301 CKDAEVHKTRELLVMLLECGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARS 379 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 379 (504)
...|++++|.+.++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555544411112 33344444445555555555555555554432 22344444455555555555555
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 380 LRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555544431 22333444444444455555555555555444
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.7e-14 Score=124.62 Aligned_cols=224 Identities=9% Similarity=-0.007 Sum_probs=132.1
Q ss_pred HHhcCCHHHHHHHHHHhhhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQC---KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
+...|++++|+..|+++.+... +.+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3455777888888887776531 1245567777777778888888888888877664 34567777777777778888
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHH
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKM 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 176 (504)
++|...|+++.+.. +.+..++..+..++...|++++|.+.++++....|... .....+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888777763 23456677777777777777777777777776655422 1222223334456666666666555
Q ss_pred hhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 177 GDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKP---RFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
.... |+......++..+...++.++|+..++......... +...+..++..+...|++++|...++++...
T Consensus 171 ~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 4432 122222234445555555555655555554431100 1233444444444444444444444444443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.9e-14 Score=120.63 Aligned_cols=211 Identities=9% Similarity=0.001 Sum_probs=129.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555555666666666666666665543 3345555555666666666666666666655542 1233444444444
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (504)
+...|++++|.+.++++....+ .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~------------------------------------~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM------------------------------------ENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC------------------------------------CSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC------------------------------------CCHHHHHHHHHHHHHhccHHHH
Confidence 4445555555444444443322 2445566667777777788888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
...++++.+.. +.+...+..++..+...|++++|...++.+.+..+. +...+..+..++...|++++|...++++.+.
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88887777663 456788899999999999999999999999987654 7788999999999999999999999999887
Q ss_pred CCCCChhhHHHH
Q 048258 285 DIAPNLVTFNTL 296 (504)
Q Consensus 285 ~~~~~~~~~~~l 296 (504)
... +...+..+
T Consensus 223 ~p~-~~~~~~~~ 233 (243)
T 2q7f_A 223 QPD-HMLALHAK 233 (243)
T ss_dssp CTT-CHHHHHHH
T ss_pred Ccc-hHHHHHHH
Confidence 432 44444443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=3.1e-13 Score=112.70 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
..+..++..+...|++++|.+.++.+.+..+. +...+..+...+...|++++|.+.+++..+... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 33444444444445555555544444443322 344444444444445555555555544444321 1333344444444
Q ss_pred hcC-CchHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 301 CKD-AEVHKTRELLVMLLECGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 301 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
... |++++|...++.+.+.+..| +...+..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 444 44444444444444311111 12333334444444444444444444444331 1123333344444444444444
Q ss_pred HHHHHHHHH
Q 048258 379 SLRLFQKMQ 387 (504)
Q Consensus 379 a~~~~~~~~ 387 (504)
|...++++.
T Consensus 166 A~~~~~~~~ 174 (225)
T 2vq2_A 166 ADYYFKKYQ 174 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=1.1e-14 Score=133.83 Aligned_cols=269 Identities=12% Similarity=0.054 Sum_probs=150.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCChhhHHH
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDRLVSNV----NSYNMVIDCFCKVNMMDRATEICREMRDR----D-IAPNLVTFNT 295 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 295 (504)
.+...+...|++++|...++++.+..+. +. ..+..+...+...|++++|+..+++..+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344444444444444444444443322 11 23444444455555555555555444322 0 0112234444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHC----C-CCccHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHH
Q 048258 296 LISGHCKDAEVHKTRELLVMLLEC----G-FKPDKFTFNSMIDCLCRAHR-----------------FEDALDCLSEMVE 353 (504)
Q Consensus 296 l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~ 353 (504)
+...|...|++++|...+++..+. + .+.....+..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 455555555555555555544322 0 01123345555566666666 6666666665543
Q ss_pred C----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 354 W----GV-PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRIS-PD----IYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 354 ~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
. +. +....++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 11 112235666777777788888888877777553100 01 22667777778888888888888877765
Q ss_pred CCCC-C----CcccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 424 LGLR-P----DNFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNP-DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 424 ~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.... . ...++..+...+...|++++|...+++.... +..+ ...++..++.++...|++++|.++++++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3100 0 1345667777888888888888888877642 1011 134677788888888888888888888765
Q ss_pred c
Q 048258 494 R 494 (504)
Q Consensus 494 ~ 494 (504)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1.5e-14 Score=133.01 Aligned_cols=133 Identities=7% Similarity=-0.077 Sum_probs=75.3
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHHhcCC---C--ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----CCHH
Q 048258 187 TFDYTVTCLVTGLDLNETCGILDTFIKRGV---K--PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-----SNVN 256 (504)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~ 256 (504)
.+..+...+...|++++|++.+++..+... . .....+..+...+...|++++|...++++...... ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555556666666665555544310 0 01225556666666666666666666665543211 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 257 SYNMVIDCFCKVNMMDRATEICREMRDRDI-----APNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
++..+...+...|++++|...+++...... .....++..+...|...|++++|...+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 566666677777777777777766654310 111335666667777777777777777776654
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.2e-14 Score=130.46 Aligned_cols=279 Identities=10% Similarity=-0.071 Sum_probs=158.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGL----GYAP 78 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~ 78 (504)
.+....+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|++++|+..+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566777888899999999999999988764 333 356778888888999999999988876432 2112
Q ss_pred -cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCC--------------------hH
Q 048258 79 -NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC-PN----EATVRSLVHGVFRCLD--------------------PH 132 (504)
Q Consensus 79 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 132 (504)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456777888888889999999888887654100 11 2356677777777788 77
Q ss_pred HHHHHHHHHHhcC-----CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHccCChhhHHH
Q 048258 133 KAFELLIRFMERE-----PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY-LPESSTFDYTVTCLVTGLDLNETCG 206 (504)
Q Consensus 133 ~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (504)
+|.+.+++..... ......++..+...+...|++++|...+++...... .++.
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------- 223 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------------------
Confidence 7777666654321 011123444555555556666666655555432100 0010
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 207 ILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-----SNVNSYNMVIDCFCKVNMMDRATEICREM 281 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (504)
.....++..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.
T Consensus 224 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 224 ----------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 001123444444444555555555544444322110 01234445555555555555555555554
Q ss_pred HhCCCC-C----ChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 282 RDRDIA-P----NLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 282 ~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
.+.... + ...++..+...|...|++++|...++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332100 0 13344555555555566666655555543
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=2e-12 Score=113.19 Aligned_cols=183 Identities=11% Similarity=0.025 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHH
Q 048258 307 HKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN-TI-TYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 444444444444111123334444444444444555555555544442 121 21 44444444444455555555555
Q ss_pred HHHhCCCCCCHHhHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CC
Q 048258 385 KMQADRISPDIYTFNALIQSFC-RMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG-CN 462 (504)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 462 (504)
++.+.. +++...|...+.... ..|++++|..+|+++++.. +.+...|..++..+.+.|++++|+.+|+++.... ++
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 444432 122222222222111 1345555555555444431 1123344444444444455555555555554431 22
Q ss_pred C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 463 P--DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 463 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 123444444444444555555555554444
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=5.7e-14 Score=128.79 Aligned_cols=276 Identities=12% Similarity=0.075 Sum_probs=161.4
Q ss_pred ChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC----C-CCCH
Q 048258 184 ESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPR---FSTYLLLMEALYKAGRDVEGDRYLNHVFKDR----L-VSNV 255 (504)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~ 255 (504)
....+......+...|++++|+..++++.+...... ...+..+...+...|++++|...++++.... . ....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444556666777778888888888887777632211 3456677777777788888887777765321 1 1124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhcCCc--------------------hHHHH
Q 048258 256 NSYNMVIDCFCKVNMMDRATEICREMRDRDIA-PN----LVTFNTLISGHCKDAE--------------------VHKTR 310 (504)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 310 (504)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666677777777777777777777665321 11 2255566666666777 66666
Q ss_pred HHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhcCCHHHHH
Q 048258 311 ELLVMLLEC----GFK-PDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPN----TITYNILIRSLCAIGDVARSL 380 (504)
Q Consensus 311 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~ 380 (504)
..+....+. +.. ....++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666654321 111 1123455566666666777777777766654210 011 125556666666677777777
Q ss_pred HHHHHHHhC----CCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCChhHHH
Q 048258 381 RLFQKMQAD----RISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD----NFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 381 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~ 450 (504)
..+++..+. +..+. ..++..+...|...|++++|...++++.+... .++ ..++..+..++...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666542 10000 33555666666666777777666666654210 011 334555666666666666676
Q ss_pred HHHHHHHhc
Q 048258 451 QTFLSMEQN 459 (504)
Q Consensus 451 ~~~~~~~~~ 459 (504)
..+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666663
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1e-13 Score=123.54 Aligned_cols=269 Identities=11% Similarity=0.046 Sum_probs=158.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSN----VNSYNMVIDCFCKVNMMDRATEICREMRDR----DI-APNLVTFNTL 296 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 296 (504)
....+...|++++|...++++.+..+. + ...+..+...+...|++++|...+++.... +. +....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344444445555555555444443322 1 233444444555555555555555443321 10 1112344445
Q ss_pred HHHHhcCCchHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 048258 297 ISGHCKDAEVHKTRELLVMLLEC----GFK-PDKFTFNSMIDCLCRAHR--------------------FEDALDCLSEM 351 (504)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 351 (504)
...+...|++++|...+++..+. +.. ....++..+...+...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 55555555555555555554321 100 012245555556666666 66666666655
Q ss_pred HHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 048258 352 VEW----GV-PPNTITYNILIRSLCAIGDVARSLRLFQKMQAD----RIS-PDIYTFNALIQSFCRMNKIEKAEKAFFSM 421 (504)
Q Consensus 352 ~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 421 (504)
... +. +....++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 431 11 112335677777888888888888888877643 101 11236777888888899999999998887
Q ss_pred HhCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 422 LTLGL-RPD----NFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNP-DSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 422 ~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
.+... .++ ..++..+...+...|++++|...++++.+. +-.+ ...++..++.++...|++++|.++++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 75310 011 446777888899999999999999888653 1111 1346778899999999999999999999
Q ss_pred HHcC
Q 048258 492 KERG 495 (504)
Q Consensus 492 ~~~~ 495 (504)
.+..
T Consensus 330 ~~~~ 333 (338)
T 3ro2_A 330 LEIS 333 (338)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 8753
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=3e-12 Score=112.14 Aligned_cols=235 Identities=10% Similarity=0.005 Sum_probs=134.7
Q ss_pred hhhHHHHHHHHHhc----CCH----HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHH
Q 048258 10 TRLYNAVIDALVKS----NSI----DLAYLKFQQMSVDQCKPDRFTYNILIHGICR-------IGVV-------DEALRL 67 (504)
Q Consensus 10 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~ 67 (504)
...|...+....+. ++. ++|+.+|+++.+.. +.++..|..++..+.. .|++ ++|+.+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34566666665543 233 67777888877654 5677777777766653 4664 677777
Q ss_pred HHHHHh-CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 68 VKQMEG-LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPN-EA-TVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
|++..+ .. +.+...|..++..+.+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus 87 ~~rAl~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 87 YERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777776 32 334556777777777777777777777777764 232 22 5666666666667777777776666665
Q ss_pred CCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHH
Q 048258 145 EPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYL 224 (504)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (504)
.|. ....|........ ...|+.++|..+|+...+.. +.+...+.
T Consensus 164 ~p~-~~~~~~~~a~~~~----------------------------------~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 207 (308)
T 2ond_A 164 ART-RHHVYVTAALMEY----------------------------------YCSKDKSVAFKIFELGLKKY-GDIPEYVL 207 (308)
T ss_dssp TTC-CTHHHHHHHHHHH----------------------------------HTSCCHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHH----------------------------------HHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 443 2223322221111 11344444444444444432 22444555
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 225 LLMEALYKAGRDVEGDRYLNHVFKDR-LV--SNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.++..+.+.|++++|..+|++++... .. .....|..++....+.|+.+.|..+++++.+.
T Consensus 208 ~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555566666666666665542 12 13445555666666666666666666666554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=5.7e-14 Score=125.18 Aligned_cols=278 Identities=11% Similarity=-0.070 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CcH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGL----GYA-PNV 80 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 80 (504)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|++.+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3456667788888999999999999988764 333 356778888888999999999998886543 111 235
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERNV-CPN----EATVRSLVHGVFRCLD--------------------PHKAF 135 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 135 (504)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677788888888999999988888765311 112 2356667777777777 66666
Q ss_pred HHHHHHHhcC-----CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 136 ELLIRFMERE-----PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 136 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
+.+++..... .......+..+...+...|++++|.+.+++......
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------------------------- 214 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK----------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----------------------------
Confidence 6666544320 011122344444445555555555555544432100
Q ss_pred HHhcCC-CccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 211 FIKRGV-KPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-----SNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 211 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
..+. .....++..++..+...|++++|...++........ ....++..+...+...|++++|...+++..+.
T Consensus 215 --~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 215 --EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp --HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0000 001224455555555566666666555555432111 01334555566666666666666666655432
Q ss_pred CC-----CCChhhHHHHHHHHhcCCchHHHHHHHHHHHHC
Q 048258 285 DI-----APNLVTFNTLISGHCKDAEVHKTRELLVMLLEC 319 (504)
Q Consensus 285 ~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (504)
.. .....++..+...+...|++++|...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 011234555666666666666666666666543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=5e-13 Score=121.33 Aligned_cols=231 Identities=8% Similarity=-0.048 Sum_probs=166.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CC--CccHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDR----DIAP-NLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GF--KPDKFTFN 329 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~ 329 (504)
....+...|++++|+..+++..+. +..+ ...++..+...|...|+++.|...+.+..+. +. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666778888888888877654 1111 2356777777888888888888888776542 10 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHhHH
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEWGVP-PN----TITYNILIRSLCAIGDVARSLRLFQKMQAD----RI-SPDIYTFN 399 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 399 (504)
.+..+|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888899999999999999887753110 11 236888999999999999999999998762 22 33455788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCC---CCC-cccHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCC-ChhhHHHH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTLGL---RPD-NFSYSALIKALIKSGR---FDEAKQTFLSMEQNGCNP-DSYTSNLI 471 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 471 (504)
.+..++...|++++|...+++..+... .|. ...+..+...+...|+ +++|..++++.. ..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 899999999999999999998876310 111 2235667778888888 777777776662 233 34567789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048258 472 LETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 472 ~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
+..|...|++++|.++++++.+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=8.4e-13 Score=106.13 Aligned_cols=168 Identities=15% Similarity=0.083 Sum_probs=127.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-++.+|..+...+.+.|++++|+..|++..+.+ |.+..++..+..++.+.|++++|+..++...... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356678888888888888888888888888776 5677788888888888888888888888887664 34566777777
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
..+...++++.+...+.+..... +.+...+..+..++...|++++|++.|++..+..|. +..++..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 77778888888888888887764 235667777778888888888888888887777665 5566777777777777777
Q ss_pred HHHHHHHHHhhC
Q 048258 168 EAAAILRKMGDR 179 (504)
Q Consensus 168 ~a~~~~~~~~~~ 179 (504)
+|.+.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.1e-12 Score=105.34 Aligned_cols=167 Identities=15% Similarity=0.080 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQ 403 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 403 (504)
+..+|..+...|...|++++|+..|++..+.. |.+..++..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666666677777777777666653 3355566666666666777777777666666542 334445555666
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEE 483 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 483 (504)
.+...++++.|...+.+..+.. +.+...+..+..++...|++++|++.+++..+.. +.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666667777777766666542 2234556666666667777777777777666642 2345566666677777777777
Q ss_pred HHHHHHHHHHc
Q 048258 484 AHDIVKTSKER 494 (504)
Q Consensus 484 a~~~~~~~~~~ 494 (504)
|.+.++++.+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777766654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=7.3e-13 Score=120.24 Aligned_cols=300 Identities=9% Similarity=-0.009 Sum_probs=161.3
Q ss_pred HHhcCCHHHHHHHHHHhhhC--CC--CCCHHhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCcHHh
Q 048258 20 LVKSNSIDLAYLKFQQMSVD--QC--KPDRFTYNILIHG--ICRIGVVDEAL-----------RLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 82 (504)
+.+.+++++|..+++.+.+. .. .++...|-.++.. ....++++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 45678888888888777543 11 2223333333222 12223333444 555555432 111111
Q ss_pred H------HHHHHHHHhcCChhhHHHHHHHHHHcC--CC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchh
Q 048258 83 Y------TILIDGFCNAKRVAEVFRVLEIMKERN--VC--P-NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKL 151 (504)
Q Consensus 83 ~------~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 151 (504)
+ ......+...|++++|...|++..+.- .. + ...++..+...+...|++++|...+++.....+.....
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 113444556677777777777765430 11 1 12345556666666666666666666554421110000
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc----CCC-ccHHHHHHH
Q 048258 152 VCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR----GVK-PRFSTYLLL 226 (504)
Q Consensus 152 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 226 (504)
......++..+...+...|++++|++.+++..+. +.. ....++..+
T Consensus 180 -----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 180 -----------------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 0001123444444555555555555555544432 101 112356667
Q ss_pred HHHHHhcCCcHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhHHHHH
Q 048258 227 MEALYKAGRDVEGDRYLNHVFK-----DRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD----IAPNLVTFNTLI 297 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 297 (504)
+.++...|++++|...++++.+ ...+....++..+...+.+.|++++|...+++..+.. .+.....+..+.
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 310 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777777665 2212245667777777778888888887777765431 111223355677
Q ss_pred HHHhcCCc---hHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 298 SGHCKDAE---VHKTRELLVMLLECGFKP-DKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 298 ~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
..+...|+ .++|...++.. +..+ ....+..+...|...|++++|...+++..+
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777 55565555554 2222 234566777888888888888888888765
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=4.9e-13 Score=124.31 Aligned_cols=216 Identities=7% Similarity=-0.096 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 048258 59 GVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV-AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFEL 137 (504)
Q Consensus 59 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (504)
+.+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+... .+...+..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34677888888777653 44778888888888899999 999999999888742 3577888899999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHhcC---------CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHcc--------CC
Q 048258 138 LIRFMEREPLTQKLVCNTLLYRLSNN---------SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTG--------LD 200 (504)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 200 (504)
|++..+..|. ...+..+...+... |++++|.+.|++..+.... +...+..+..++... |+
T Consensus 160 ~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 9999888765 47888888888888 9999999999998876422 577888888888888 88
Q ss_pred hhhHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048258 201 LNETCGILDTFIKRGVK---PRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEI 277 (504)
Q Consensus 201 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (504)
+++|+..+++..+.. + .+...+..+..++...|++++|.+.|+++.+..+. +...+..+..++...|++++|++.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998864 3 47888999999999999999999999999887755 677888888899999999999887
Q ss_pred HHHH
Q 048258 278 CREM 281 (504)
Q Consensus 278 ~~~~ 281 (504)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6554
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=2.4e-13 Score=119.65 Aligned_cols=202 Identities=16% Similarity=0.110 Sum_probs=108.7
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHC------C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-C
Q 048258 292 TFNTLISGHCKDAEVHKTRELLVMLLEC------G-FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW------GV-P 357 (504)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~ 357 (504)
++..+...+...|++++|...++...+. + .+.....+..+...+...|++++|...++++.+. +. +
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444444455555555544444321 1 1122345555566666666666666666665542 11 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC------
Q 048258 358 PNTITYNILIRSLCAIGDVARSLRLFQKMQAD------RISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL------ 424 (504)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 424 (504)
.....+..+...+...|++++|...++++.+. +..| ...++..+..++...|++++|...++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22335666667777777777777777776543 1122 2345666777777777777777777777642
Q ss_pred -CCCCCcccH-------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 425 -GLRPDNFSY-------SALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 425 -~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
...+..... ......+...+.+.++...++..... .+....++..++.+|.+.|++++|.++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112222111 12222334456677777777777653 1335667888999999999999999999998764
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.5e-12 Score=120.99 Aligned_cols=217 Identities=10% Similarity=-0.118 Sum_probs=187.6
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 94 KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDP-HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
..+++++..++...... +.+...+..+...+...|++ ++|.+.|++.++..|. +...|..+...|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34678888888776553 34778889999999999999 9999999999998776 677899999999999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHcc---------CChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--------CC
Q 048258 173 LRKMGDRGYLPESSTFDYTVTCLVTG---------LDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA--------GR 235 (504)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 235 (504)
|++..+.. |+...+..+...+... |++++|++.+++..+.. +.+...+..+..++... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99998864 6678889999999999 99999999999999875 55688899999999998 99
Q ss_pred cHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHH
Q 048258 236 DVEGDRYLNHVFKDRLV--SNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELL 313 (504)
Q Consensus 236 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (504)
+++|...|+++.+..+. .+...+..+..++...|++++|++.|++..+.... +...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987651 38889999999999999999999999999887533 6677888889999999999998877
Q ss_pred HHH
Q 048258 314 VML 316 (504)
Q Consensus 314 ~~~ 316 (504)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=119.87 Aligned_cols=171 Identities=12% Similarity=-0.019 Sum_probs=129.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVD-------QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL------ 74 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 74 (504)
.+..++..+...+...|++++|...|+++.+. ..+....++..+...+...|++++|+..+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999998863 22445667888899999999999999999988754
Q ss_pred C-CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--
Q 048258 75 G-YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER------NVCP-NEATVRSLVHGVFRCLDPHKAFELLIRFMER-- 144 (504)
Q Consensus 75 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 144 (504)
+ .+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.+.+++....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 1234567888888999999999999999988764 2112 3346777788888889999998888887764
Q ss_pred ----C-CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 145 ----E-PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 145 ----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
. ......++..+...+...|++++|.+.++++..
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 112334666777778888888888888877754
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=9.4e-12 Score=112.61 Aligned_cols=229 Identities=11% Similarity=-0.004 Sum_probs=161.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CC-C-ccHHHHH
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDI-AP----NLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GF-K-PDKFTFN 329 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~ 329 (504)
....+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+.+..+. +. . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456678888888888888765411 11 2346677777888888888888888776542 11 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHhHH
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEW----GVP-PNTITYNILIRSLCAIGDVARSLRLFQKMQA-----DRISPDIYTFN 399 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 399 (504)
.+..+|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7888888999999999999887652 111 1234677888899999999999999998876 32 33366788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCC-C---cccHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCC-ChhhHHHH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTLGLRP-D---NFSYSALIKALIKSGR---FDEAKQTFLSMEQNGCNP-DSYTSNLI 471 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l 471 (504)
.+..++...|++++|...+++..+..... + ...+..+...+...|+ +.+|+..+++. +..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999999988742111 1 2234455555666777 67777777652 2223 33466788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048258 472 LETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 472 ~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+..|...|++++|.++++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998865
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.9e-11 Score=110.52 Aligned_cols=161 Identities=9% Similarity=-0.085 Sum_probs=82.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC-----CC-ChhhHHH
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPL-----TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGY-----LP-ESSTFDY 190 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 190 (504)
...+...|++++|...|++....... ....++..+...+...|+++.|...+.+...... .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 33445566666666666665543111 1223455555566666666666666555433100 00 1234445
Q ss_pred HHHHHHccCChhhHHHHHHHHHhc----CCC-ccHHHHHHHHHHHHhcCCcHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 048258 191 TVTCLVTGLDLNETCGILDTFIKR----GVK-PRFSTYLLLMEALYKAGRDVEGDRYLNHVFK-----DRLVSNVNSYNM 260 (504)
Q Consensus 191 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 260 (504)
+...+...|++++|++.+++..+. +.+ ....++..++.++...|++++|...++++.. ..+. ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 555556666666666665555442 111 1123455555666666666666666665554 3322 2445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048258 261 VIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+...+.+.|++++|...+++..+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 55666666666666666655544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=3.9e-11 Score=108.43 Aligned_cols=299 Identities=11% Similarity=0.033 Sum_probs=180.4
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC-CCH----HHHH
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKPRF----STYLLLMEALYKAGRDVEGDRYLNHVFKDRLV-SNV----NSYN 259 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~ 259 (504)
......+...|++++|...+++........+. ..+..+...+...|++++|...+++....... .+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33445566778888888888887775422222 24556667777888888888888877653211 111 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC----ccHHHH
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDR----DIA--P-NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFK----PDKFTF 328 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 328 (504)
.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5667777888888888888776543 111 1 2234555667777888888888888777643211 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHH
Q 048258 329 NSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT-ITYN-----ILIRSLCAIGDVARSLRLFQKMQADRISPD---IYTFN 399 (504)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 399 (504)
..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 66777777888888888888877653111111 1111 223346677888888888877765432111 22455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC----CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTL----GLRPDN-FSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILET 474 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 474 (504)
.+...+...|++++|...++++... |..++. ..+..+..++...|++++|...+++..... +... ....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~~g----~~~~ 331 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NRTG----FISH 331 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHC----CCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cccc----HHHH
Confidence 6667777788888888888776542 211111 245556666777888888888888877531 1111 1223
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 048258 475 LVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 475 ~~~~g~~~~a~~~~~~~~~~~ 495 (504)
+...| +....+++.+....
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTT
T ss_pred HHHcc--HHHHHHHHHHHhCC
Confidence 33444 56666666665543
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1.9e-11 Score=98.23 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=125.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456677788888888888888888887665 5567788888888888888888888888887764 4467778888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++.....+. +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887764 345667777777888888888888888887776544 455666677777777777777
Q ss_pred HHHHHHHhh
Q 048258 170 AAILRKMGD 178 (504)
Q Consensus 170 ~~~~~~~~~ 178 (504)
.+.+++...
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.2e-10 Score=105.12 Aligned_cols=235 Identities=11% Similarity=-0.033 Sum_probs=133.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCc--HHhH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRF----TYNILIHGICRIGVVDEALRLVKQMEGLG--Y-APN--VYTY 83 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~--~~~~ 83 (504)
+......+...|+++.|...+++........+.. +++.+...+...|++++|...+++..... . .+. ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556677888898988888877654222222 45566677778888888888888875421 0 111 2235
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc----chhH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKER----NVC--P-NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT----QKLV 152 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 152 (504)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....+.. ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56667777888888888888877653 211 1 12345556677777888888888887776543321 1234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCh-hhHH-----HHHHHHHccCChhhHHHHHHHHHhcCCCc---cHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPES-STFD-----YTVTCLVTGLDLNETCGILDTFIKRGVKP---RFSTY 223 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 223 (504)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666777777777777665432111111 1111 11223445566666666665554432111 11123
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHH
Q 048258 224 LLLMEALYKAGRDVEGDRYLNHVF 247 (504)
Q Consensus 224 ~~l~~~~~~~~~~~~a~~~~~~~~ 247 (504)
..+...+...|++++|...++.+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555555555554443
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=9.9e-12 Score=120.13 Aligned_cols=167 Identities=11% Similarity=-0.021 Sum_probs=148.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-++..|+.+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|+..|++..+.. +-+..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346789999999999999999999999999876 5678899999999999999999999999998875 44688999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.+|...|++++|++.|++..+.+. -+...+..+..++...|++++|++.|++.++..|. ....+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999999998753 36678999999999999999999999999998776 6778888999999999999
Q ss_pred HHHHHHHHHhh
Q 048258 168 EAAAILRKMGD 178 (504)
Q Consensus 168 ~a~~~~~~~~~ 178 (504)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887643
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.4e-11 Score=97.63 Aligned_cols=165 Identities=20% Similarity=0.142 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 326 FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455566667777888888888888777653 3466677777888888888888888888877652 34566777777888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAH 485 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 485 (504)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887753 3455667777788888888888888888887753 345677788888888888888888
Q ss_pred HHHHHHHHc
Q 048258 486 DIVKTSKER 494 (504)
Q Consensus 486 ~~~~~~~~~ 494 (504)
++++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887765
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=1.7e-11 Score=118.45 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=75.5
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 048258 291 VTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSL 370 (504)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 370 (504)
.+++.+...+.+.|++++|++.|++..+... -+...+..+..+|.+.|++++|+..|++.++.. +.+...|..+..++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444445555555555555555555444321 134444444445555555555555555544432 22334444455555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 048258 371 CAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEA 449 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 449 (504)
...|++++|++.|+++.+.. +-+...++.+..+|...|++++|++.|+++++. .|+ ...+..++.++...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555544431 223334444444555555555555555554443 222 33444444444455555555
Q ss_pred HHHHHHHHh
Q 048258 450 KQTFLSMEQ 458 (504)
Q Consensus 450 ~~~~~~~~~ 458 (504)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=5e-11 Score=99.43 Aligned_cols=195 Identities=10% Similarity=0.024 Sum_probs=143.9
Q ss_pred ChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 289 NLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888888888999999999999988876543677777778888889999999999999988864 336667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---cccHHHHHH
Q 048258 369 SLCAIGDVARSLRLFQKMQADRISPDI-------YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD---NFSYSALIK 438 (504)
Q Consensus 369 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 438 (504)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+++++. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999888753 2334 45777778888889999999999998875 444 455666666
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
++...| ...++++...+ ..+...+... .....+.+++|..+++++.+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 665443 44455555542 2233333332 2344566899999999998865
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=1.5e-10 Score=96.48 Aligned_cols=136 Identities=10% Similarity=-0.073 Sum_probs=94.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+.+. .+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3456777777888888888888888888887765326666777777778888888888888888877642 245567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcch------hHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQK------LVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
..++...|++++|.+.+++.....|.... ..+..+...+...|++++|.+.|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 77888888888888888887776654221 2344455555555666666666655554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.36 E-value=2.1e-11 Score=105.43 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHhcCCchHHHHHHHHHHHHC------C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 048258 290 LVTFNTLISGHCKDAEVHKTRELLVMLLEC------G-FKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW------G- 355 (504)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 355 (504)
..++..+...+...|++++|...++.+.+. + .+....++..+...|...|++++|...++++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 334445555555555555555555554432 1 1223445666666667777777777777666543 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 048258 356 VPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD------RISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL---- 424 (504)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 424 (504)
.+....++..+...+...|++++|...++++.+. ...| ...++..+..+|...|++++|...++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1223446677777777788888888877777653 1122 3456777888888888888888888877753
Q ss_pred ---CCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHH---h-cC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 425 ---GLRPDN-FSYSALIKALIKSGRFDEAKQTFLSME---Q-NG-CNP-DSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 425 ---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~---~-~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
...+.. ..+..+.......+....+..+ ..+. . .+ ..| ...++..++.+|...|++++|.++++++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122332 2333333333333333333222 2221 1 11 112 3456788899999999999999999988764
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.35 E-value=4.2e-09 Score=97.77 Aligned_cols=123 Identities=9% Similarity=0.019 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAI-GDVARSLRLFQKMQADRISPDIYTFNALIQSF 405 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (504)
.|...+....+.++.+.|..+|+.+ +. .+.+...|.......... ++.+.|..+|+...+.. +.+...+...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444555555556666666666666 21 112223332222211222 25666666666666541 22233344455555
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 406 CRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
...|+.+.|..+|+++.+ ....|...+..-...|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666666666521 23445555554455666666666666655
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=3.8e-11 Score=103.79 Aligned_cols=158 Identities=12% Similarity=-0.065 Sum_probs=114.2
Q ss_pred HhcCCHHHHHHHHHHhhhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCcHHhHHHH
Q 048258 21 VKSNSIDLAYLKFQQMSVD-------QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL------GY-APNVYTYTIL 86 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 86 (504)
...|+++.|+..|++..+. +.+....++..+...+...|++++|+..++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 22335667888899999999999999999988754 21 2345678888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCcchhH
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKER------NV-CPNEATVRSLVHGVFRCLDPHKAFELLIRFMER------E-PLTQKLV 152 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 152 (504)
..+|...|++++|...++++.+. .. +....++..+...+...|++++|.+.+++.... . ......+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 123456777888888889999998888887765 1 1123456
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
+..+...+...|++++|...+++...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777777778888888877777654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=2.9e-09 Score=90.12 Aligned_cols=179 Identities=10% Similarity=0.012 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 274 ATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGF-KPDKFTFNSMIDCLCRAHRFEDALDCLSEMV 352 (504)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (504)
|+..|++....+ .++..++..+..++...|++++|++++...+..+. .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 23444445555666666666666666666554432 1245555566666666666666666666665
Q ss_pred HCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 353 EWGVPP-----NTITYNILIRS--LCAIG--DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 353 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+...++.++...|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 23344444444 22223 666666666666543 33322222333356666666666666665443
Q ss_pred C-----CC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 424 L-----GL----RPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 424 ~-----~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
. +. +.++.++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 00 1234444344444444554 666666666663
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.26 E-value=1.1e-07 Score=88.31 Aligned_cols=373 Identities=8% Similarity=-0.038 Sum_probs=217.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCcHHhH
Q 048258 7 SPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV-VDEALRLVKQMEGL-GY-APNVYTY 83 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~ 83 (504)
.--..+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. ..+...|
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 4445567666666654 7888888888888875 4688888887777766663 35566777776543 32 3356677
Q ss_pred HHHHHHHH----hcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 048258 84 TILIDGFC----NAKRVAEVFRVLEIMKERNVCPNE-ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLY 158 (504)
Q Consensus 84 ~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (504)
...+..+. ..++.+.+.++|+++..... .+. ..|...... ........+..+..+..
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------- 150 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENF-ELELNKITGKKIVGDTL---------------- 150 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHH-HHHhccccHHHHHHHHh----------------
Confidence 77776544 24567778888888876421 111 122222111 11111222222222211
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccC--C-----hhhHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 048258 159 RLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGL--D-----LNETCGILDTFIKRGVKPRFSTYLLLMEALY 231 (504)
Q Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (504)
+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...+...+..+.
T Consensus 151 -----~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 151 -----PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 112223333332221000012234444333322211 0 234667888877753 556778888888888
Q ss_pred hcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------CCCChhhHHHHHHH
Q 048258 232 KAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRD------------IAPNLVTFNTLISG 299 (504)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~ 299 (504)
+.|+.+.|..++++.+.. +. +...+.. |......++. ++.+.+.- .......|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~-P~-~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-SD-GMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-CC-SSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC-CC-cHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 889999999999998887 33 4333332 2221111111 22222110 01112456666666
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR-AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
..+.++.+.|..+|+.. +. ...+...|......-.. .++.+.|..+|+...+.. +.++..+...+......|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 66778899999999998 32 12344444433332222 346999999999998863 3345556667777788999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 379 SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 373 aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999983 2567888888777788999999999988774
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=7e-10 Score=94.54 Aligned_cols=102 Identities=7% Similarity=-0.090 Sum_probs=76.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD---RFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APNVYT 82 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 82 (504)
.++..+......+.+.|++++|+..|+++.+.. +.+ ..++..+..++.+.|++++|+..|++..+... +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 445667777888888888888888888888764 333 66777888888888888888888888877521 122456
Q ss_pred HHHHHHHHHh--------cCChhhHHHHHHHHHHcC
Q 048258 83 YTILIDGFCN--------AKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 83 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~ 110 (504)
+..+..++.. .|++++|+..|+++.+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6677777777 888888888888888763
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=6.4e-10 Score=83.86 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46667777888888888888888877654 4566777777777888888888888888877654 345667777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 92 NAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888877663 23455666777777777777777777777665443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=3.5e-10 Score=98.00 Aligned_cols=162 Identities=10% Similarity=0.026 Sum_probs=85.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhcCCchHHHHHHHHHHHHC----CCCc-cHHHHHHH
Q 048258 262 IDCFCKVNMMDRATEICREMRDR----DIAP-NLVTFNTLISGHCKDAEVHKTRELLVMLLEC----GFKP-DKFTFNSM 331 (504)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 331 (504)
...|...|++++|.+.|.+..+. +.++ ...++..+...|...|++++|...+++..+. |-.. ...++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666677777777777665443 1111 1345666666666666666666666665432 1100 02345555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HhHH
Q 048258 332 IDCLCRA-HRFEDALDCLSEMVEWGVPP-N----TITYNILIRSLCAIGDVARSLRLFQKMQADRISPDI------YTFN 399 (504)
Q Consensus 332 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 399 (504)
...|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|+++.+....... ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5556554 66666666666655421000 0 234555556666666666666666666554211111 1344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
.+..++...|++++|...|++..+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555566666666666666554
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=5.6e-09 Score=88.40 Aligned_cols=178 Identities=11% Similarity=-0.031 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRL-VSNVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
+..+++....+ +++..++..++.++...|++++|++++.+.+..++ .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444443332 23333344555555555555555555555544433 12444555555556666666666666665554
Q ss_pred CCCCC-----ChhhHHHHHHHH----hcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048258 284 RDIAP-----NLVTFNTLISGH----CKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW 354 (504)
Q Consensus 284 ~~~~~-----~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (504)
. .| +..+...+..++ ...++...|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 22 123333333331 1123555555555555443 223222223333455555555555555544331
Q ss_pred C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 355 G---------VPPNTITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 355 ~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
- -+.++.++..++......|+ +|.++++++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 0 02234444344444444444 455555555553
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=2.1e-09 Score=91.60 Aligned_cols=190 Identities=12% Similarity=0.025 Sum_probs=113.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-Chh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVC-P-NEA 116 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~ 116 (504)
+.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+++.+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456677777778888888888888888887763 223 567777888888888888888888888876321 1 234
Q ss_pred hHHHHHHHHHh--------cCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 048258 117 TVRSLVHGVFR--------CLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF 188 (504)
Q Consensus 117 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (504)
.+..+..++.. .|++++|...|++++...|... .....+ ..+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-THHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hHHHHH--------------HHHHHHHHH----HHHHH
Confidence 56666777777 7778888888877777655421 111111 111111000 01113
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhc----------CCcHHHHHHHHHHHhCCC
Q 048258 189 DYTVTCLVTGLDLNETCGILDTFIKRGVKP--RFSTYLLLMEALYKA----------GRDVEGDRYLNHVFKDRL 251 (504)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~ 251 (504)
..+...+...|++++|+..++.+.+..... ....+..++.++... |++++|...++.+.+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 344555666666666666666666542111 234555555555544 555666666666655443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=1.3e-09 Score=89.02 Aligned_cols=115 Identities=14% Similarity=0.010 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNI----------------LIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
...+......+.+.|+++.|+..|++..+.+ +.+...|.. +..++.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444455667778888888888888887653 334444544 55555555555555555555555
Q ss_pred CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
.. +.+...+..+..++...|++++|+..|++..+.++ .+..++..+..+|..
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYL 134 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 43 23445555555555555555555555555555431 233444444444433
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=1.5e-09 Score=81.78 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455555666666666666666665542 2344455556666666666666666666666542 2234455566666666
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 443 SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
.|++++|.+.++++.... +.+..++..++.++...|++++|.+.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 667777777766666542 2345566666667777777777777777666543
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=5.7e-09 Score=85.46 Aligned_cols=174 Identities=11% Similarity=-0.000 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHH
Q 048258 310 RELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG----DVARSLRLFQK 385 (504)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 385 (504)
...|++..+.| ++..+..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|...|++
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 34444444432 34444444444555555555555555555432 33444444444444 3 45555555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHH
Q 048258 386 MQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLGLR-PDNFSYSALIKALIK----SGRFDEAKQTFLSM 456 (504)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 456 (504)
..+.+ +...+..|...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|..+|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54432 33444444444444 44555555555555544310 013444445555544 44555555555555
Q ss_pred HhcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 048258 457 EQNGCNPDSYTSNLILETLVQQ-G-----RFEEAHDIVKTSKERG 495 (504)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 495 (504)
.+. +++...+..+..+|..- | ++++|..+++++.+.|
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 543 12333444455444432 2 5555555555555444
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.4e-09 Score=94.18 Aligned_cols=209 Identities=12% Similarity=-0.070 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-HHhHHHHHHHHHhcCChhhH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----GYAPN-VYTYTILIDGFCNAKRVAEV 99 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 99 (504)
++++|...|+++ +..|...|++++|+..|++..+. |.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33456677777777777766542 21122 45677777777777888887
Q ss_pred HHHHHHHHHcCCC-CC----hhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCc-----chhHHHHHHHHHhcCCChHH
Q 048258 100 FRVLEIMKERNVC-PN----EATVRSLVHGVFRC-LDPHKAFELLIRFMEREPLT-----QKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 100 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 168 (504)
+..|++..+.... .+ ..++..+..+|... |++++|.+.|++.+...+.. ...+++.+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777777653110 01 23566777777775 88888888777776543221 13456677777888888888
Q ss_pred HHHHHHHHhhCCCCCCh------hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCc-c---HHHHHHHHHHHH--hcCCc
Q 048258 169 AAAILRKMGDRGYLPES------STFDYTVTCLVTGLDLNETCGILDTFIKRGVKP-R---FSTYLLLMEALY--KAGRD 236 (504)
Q Consensus 169 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~~~~ 236 (504)
|+..|++.......... ..+..+..++...|++++|+..+++..+..... + ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 88888877765332221 145666677777888888888887776642110 1 112344455553 34557
Q ss_pred HHHHHHHHHHHh
Q 048258 237 VEGDRYLNHVFK 248 (504)
Q Consensus 237 ~~a~~~~~~~~~ 248 (504)
++|+..|+.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 777777766544
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=8.3e-10 Score=87.59 Aligned_cols=163 Identities=13% Similarity=-0.005 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH-
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG- 89 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (504)
..+......+.+.|+++.|+..|+++.+.. +.+...+..+...+...|++++|+..+++..... |+...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345667788999999999999999988765 5678889999999999999999999999987663 354443332222
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-chhHHHHHHHHHhcCCChHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT-QKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 168 (504)
+...+...+++..+++..+... .+...+..+..++...|++++|...|+++....|.. +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1222334457888888887642 356778888888888899999999888888887653 34577777888888888888
Q ss_pred HHHHHHHHh
Q 048258 169 AAAILRKMG 177 (504)
Q Consensus 169 a~~~~~~~~ 177 (504)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.15 E-value=1.2e-09 Score=106.36 Aligned_cols=153 Identities=8% Similarity=-0.117 Sum_probs=84.2
Q ss_pred HhcCCHHHHHHHHHHhh--------hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 21 VKSNSIDLAYLKFQQMS--------VDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 21 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
...|++++|+..++++. +.. +.+...+..+...+...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45556666666666555 332 3344555555555666666666666666655543 2345555555555666
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI 172 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 172 (504)
.|++++|+..|++..+.+. .+...+..+..++...|++++ .+.|++..+..|. +...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666555431 234455555555566666666 6666665555444 334555555555555555555555
Q ss_pred HHHHhh
Q 048258 173 LRKMGD 178 (504)
Q Consensus 173 ~~~~~~ 178 (504)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 555544
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=3.6e-10 Score=86.82 Aligned_cols=145 Identities=8% Similarity=-0.087 Sum_probs=105.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
|...+...|+++.|+..++...... +.+...+-.+...|.+.|++++|++.|++..+.. +.+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445566788888888888887653 3345556677888888899999999998888764 4467888888888888899
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCcchhHHHHHHHHHhcCC
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFEL-LIRFMEREPLTQKLVCNTLLYRLSNNS 164 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 164 (504)
+++|+..|++..+.+. -+..++..+..++.+.|+.++|.+. +++..+..|. +..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 9999999888888742 3566788888888888888766554 5777777665 5556665555555554
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=9.5e-09 Score=85.14 Aligned_cols=183 Identities=11% Similarity=0.044 Sum_probs=107.5
Q ss_pred hhHHHHHHHHhcCCchHHHHHHHHHHHHCCCC-c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHH
Q 048258 291 VTFNTLISGHCKDAEVHKTRELLVMLLECGFK-P-DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI---TYNI 365 (504)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ 365 (504)
..+..+...+.+.|++++|...|+.+.+..+. + ....+..+..++.+.|++++|+..|+++.+.... +.. .+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHHH
Confidence 34445556666677777777777777654221 1 1345566666777777777777777777665221 211 3333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc-cH-----------
Q 048258 366 LIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNF-SY----------- 433 (504)
Q Consensus 366 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~----------- 433 (504)
+..++...|.. .+ ..+..+...+...|++++|...|+++++. .|+.. .+
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 44444331100 00 00011111122344555555555555553 23321 11
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048258 434 ------SALIKALIKSGRFDEAKQTFLSMEQNGCNPD----SYTSNLILETLVQQGRFEEAHDIVKTSKERG 495 (504)
Q Consensus 434 ------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 495 (504)
..+...+.+.|++++|+..|+++++. .|+ ...+..++.++.+.|++++|.+.++.+...+
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 24566788999999999999999985 343 2568889999999999999999999998875
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=4.6e-09 Score=85.81 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=36.1
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048258 226 LMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGH 300 (504)
Q Consensus 226 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (504)
+..++...|++++|...|+++++..+. +...+..+..++...|++++|+..|++..+..+. +..++..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 445555555555555555555554433 4445555555555555555555555555544321 334444444444
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=1.3e-08 Score=83.34 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC----chHHHHHHHHHHHHCCCCccHHHHH
Q 048258 254 NVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDA----EVHKTRELLVMLLECGFKPDKFTFN 329 (504)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (504)
++..+..+...|...+++++|+..|++..+.+ +...+..+...|.. + ++++|...|++..+.+ ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33344444444444444444444444444432 33334444444443 3 4444444444444432 333344
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 048258 330 SMIDCLCR----AHRFEDALDCLSEMVEWGVP-PNTITYNILIRSLCA----IGDVARSLRLFQKMQADRISPDIYTFNA 400 (504)
Q Consensus 330 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 400 (504)
.+...|.. .+++++|+.+|++..+.+.. .++..+..|...|.. .+++++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 44444443 44555555555555443210 013444444444444 44555555555555443 122333444
Q ss_pred HHHHHHcc-C-----CHHHHHHHHHHHHhCC
Q 048258 401 LIQSFCRM-N-----KIEKAEKAFFSMLTLG 425 (504)
Q Consensus 401 l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 425 (504)
|...|... | ++++|..+|++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44444321 1 4555555555555544
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=2.8e-09 Score=91.97 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=94.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH-H
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVR-S 120 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ 120 (504)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344555555566666666666666666665543 3345556666666666666666666666665542 3332221 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccC
Q 048258 121 LVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGL 199 (504)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 199 (504)
....+...++.+.|.+.+++.....|. +...+..+...+...|++++|.+.|.++....... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222344555566666666666665554 44555566666666666666666666665542221 2445666666666666
Q ss_pred ChhhHHHHHHHHH
Q 048258 200 DLNETCGILDTFI 212 (504)
Q Consensus 200 ~~~~a~~~~~~~~ 212 (504)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666665544
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=9.5e-08 Score=81.87 Aligned_cols=232 Identities=9% Similarity=0.015 Sum_probs=130.4
Q ss_pred HHHHhcCC-HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH----
Q 048258 18 DALVKSNS-IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG--VVDEALRLVKQMEGLGYAPNVYTYTILIDGF---- 90 (504)
Q Consensus 18 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 90 (504)
++..+.|. .++|+..++.++..+ +-+..+|+.-...+...| ++++++++++.+.... +-+..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 33334444 457777777777665 556666777666666666 7777777777777654 33455565544444
Q ss_pred Hhc---CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC
Q 048258 91 CNA---KRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH--KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM 165 (504)
Q Consensus 91 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (504)
... +++++++.+++.+.+.+. -+..+|..-..++...|.++ ++++.++++++..+. +-.+|+.-...+...+.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 333 566777777777776642 35566666666666666666 666666666666554 44445444333333333
Q ss_pred hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHH-HHHHHH
Q 048258 166 ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVE-GDRYLN 244 (504)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~ 244 (504)
. .+ ...++++++.++.++... +.+...+..+...+.+.|+... +..+..
T Consensus 196 ~----------------~~-------------~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 196 L----------------AT-------------DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp G----------------CC-------------HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred c----------------ch-------------hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 0 00 000444555555555442 3345555555555555555333 333444
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 245 HVFKDR--LVSNVNSYNMVIDCFCKVNMMDRATEICREMRD 283 (504)
Q Consensus 245 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (504)
.+...+ ...++..+..++..+.+.|+.++|+++++.+.+
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 443322 122556666666667677777777777777665
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.12 E-value=1.5e-07 Score=80.72 Aligned_cols=232 Identities=13% Similarity=0.059 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHHHHHHHH----Hhc---CCh
Q 048258 61 VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK--RVAEVFRVLEIMKERNVCPNEATVRSLVHGV----FRC---LDP 131 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 131 (504)
.++|+.+++.+...+ +-+..+|+.-..++...| +++++++.++.+...+.+ +..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 357777777777664 334556666666666666 777777777777766422 334444433333 233 455
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChh--hHHHHHH
Q 048258 132 HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLN--ETCGILD 209 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~ 209 (504)
+++++.++++.+..|. +-.+| +.-.-.+...+.++ ++++.++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW-----------------------------------~~R~~vl~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVW-----------------------------------SYRKWLVDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHH-----------------------------------HHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHH-----------------------------------HHHHHHHHHhcccChHHHHHHHH
Confidence 5555555555554443 33344 33333334444444 5555555
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCC------cHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 048258 210 TFIKRGVKPRFSTYLLLMEALYKAGR------DVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDR-ATEICREMR 282 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 282 (504)
.+.+.. +-+..++......+...+. ++++++.++.++...+. |...|+..-..+.+.|+... +.++..++.
T Consensus 171 ~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 171 KVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 555543 3344455544444444444 78899999999988876 88999888888888887444 556777665
Q ss_pred hCC--CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHH
Q 048258 283 DRD--IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMI 332 (504)
Q Consensus 283 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (504)
+.+ -..+...+..+...+.+.|+.++|.++++.+.+.--+....-|+...
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 543 13477889999999999999999999999998632233444454433
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=8.2e-09 Score=85.53 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=113.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc-HHhHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-P-DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYA-PN-VYTYT 84 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~ 84 (504)
++..+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.... +. ..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667788899999999999999999876311 1 2457788889999999999999999999876321 11 12444
Q ss_pred HHHHHHHh------------------cCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 048258 85 ILIDGFCN------------------AKRVAEVFRVLEIMKERNVCPNEA-TVRSLVHGVFRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 85 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.+..++.. .|++++|+..|+++.+.. |+.. ......... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHH----
Confidence 44555543 456777777777776652 2222 211110000 000000
Q ss_pred CCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC--ChhhHHHHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 146 PLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP--ESSTFDYTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
......+...+.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0011234556667777777777777776542211 12456667777777777777777777766653
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=6.1e-10 Score=85.53 Aligned_cols=144 Identities=10% Similarity=-0.023 Sum_probs=100.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCH
Q 048258 332 IDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKI 411 (504)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 411 (504)
...+...|++++|+..++...... +.+...+..+...|...|++++|++.|+++.+.. +.+...|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 344556677888888888776542 2234456677888888888888888888887753 34567888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 048258 412 EKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQT-FLSMEQNGCNP-DSYTSNLILETLVQQGR 480 (504)
Q Consensus 412 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 480 (504)
++|...|+++++.. +-+...+..+...|.+.|++++|.+. ++++.+. .| +..++......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 88888888888753 22456777888888888888776654 5777764 44 45566666666666664
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=9.5e-09 Score=88.60 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=100.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH-HHH
Q 048258 113 PNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF-DYT 191 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 191 (504)
.+...+..+...+...|++++|.+.|++.....|. +...+..+...+...|++++|...++++... .|+.... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34455666777777778888888888877777665 4566666777777777777777777776554 2333222 122
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 048258 192 VTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVS-NVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 270 (504)
...+...++.++|+..+++..... +.+...+..+...+...|++++|...+.++++..+.. +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 223444555566666666665553 3455566666666666666666666666666554431 24455566666666666
Q ss_pred HHHHHHHHHHH
Q 048258 271 MDRATEICREM 281 (504)
Q Consensus 271 ~~~a~~~~~~~ 281 (504)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 66666555543
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=4.3e-09 Score=102.39 Aligned_cols=147 Identities=10% Similarity=-0.059 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+..+...+...|++++|++.++++.+.. +.+...+..+..++...|++++|...|+++++..+. +...+..+..++
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~ 511 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 344444455555555555555555555432 234445555555555555555555555555554433 444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCR 337 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (504)
.+.|++++ ++.|++..+.+.. +...+..+..++.+.|++++|...|++..+... .+...+..+..++..
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTSR-HFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST-THHHHHHHHHHHTC-
T ss_pred HHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc-ccHHHHHHHHHHHHc
Confidence 55555555 5555555544322 344555555555555555555555555544321 123344444444433
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=3e-09 Score=84.37 Aligned_cols=161 Identities=9% Similarity=-0.011 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-H
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG-V 125 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 125 (504)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..++++.... |+......+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556667778888888888888876653 3456777788888888888888888888876653 233332222211 1
Q ss_pred HhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHccCChhhH
Q 048258 126 FRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLP-ESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 204 (504)
...++...|.+.+++.....|. +...+..+...+...|++++|...|+++......+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222233456666666655544 44555556666666666666666666665543221 233455555555555555555
Q ss_pred HHHHHHH
Q 048258 205 CGILDTF 211 (504)
Q Consensus 205 ~~~~~~~ 211 (504)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=7.9e-09 Score=98.88 Aligned_cols=154 Identities=12% Similarity=-0.010 Sum_probs=115.4
Q ss_pred CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 303 DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 382 (504)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887764 2357788889999999999999999999999864 44677889999999999999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CChhHHHHHHHHHHhc
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKS---GRFDEAKQTFLSMEQN 459 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 459 (504)
+++..+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+...+..+..++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998863 4457788899999999999999999999998863 33466788888899999 9999999999999886
Q ss_pred C
Q 048258 460 G 460 (504)
Q Consensus 460 ~ 460 (504)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=9e-09 Score=98.46 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=114.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999988765 5568888889999999999999999999998875 44678888899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC---CChHHHHHHHHHHhhC
Q 048258 103 LEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN---SMASEAAAILRKMGDR 179 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 179 (504)
+++..+.. +.+...+..+..++...|++++|.+.+++..+..+. +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 235678888899999999999999999999888765 566777888888888 9999999999988775
Q ss_pred C
Q 048258 180 G 180 (504)
Q Consensus 180 ~ 180 (504)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=9.2e-09 Score=89.77 Aligned_cols=130 Identities=11% Similarity=-0.047 Sum_probs=69.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 048258 22 KSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFR 101 (504)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (504)
..|++++|.+++++..+.. +.. + +...++++.|...|++. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4577788888888776542 111 0 11146666666666654 334556677777777
Q ss_pred HHHHHHHcCC---CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHhcCCChHHHHH
Q 048258 102 VLEIMKERNV---CP--NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL-----TQKLVCNTLLYRLSNNSMASEAAA 171 (504)
Q Consensus 102 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 171 (504)
.|.+..+... .+ -..++..+..+|...|++++|...|++.+..... ....++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766654310 00 1234555666666667777777666665443110 012344444555555 55555555
Q ss_pred HHHHHh
Q 048258 172 ILRKMG 177 (504)
Q Consensus 172 ~~~~~~ 177 (504)
.|++..
T Consensus 137 ~~~~Al 142 (307)
T 2ifu_A 137 LYQQAA 142 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=6.2e-08 Score=79.49 Aligned_cols=133 Identities=8% Similarity=-0.141 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGF 90 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..+..+...+...|++++|+..|+++. .|+..++..+...+...|++++|+..|++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667888899999999999999885 5688899999999999999999999999998775 45778899999999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc
Q 048258 91 CNAKRVAEVFRVLEIMKERNVCP---------------NEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT 148 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (504)
...|++++|+..|++..+..... ....+..+..++...|++++|.+.|++.....|..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999998863211 12577888889999999999999999998887653
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=3.3e-08 Score=86.23 Aligned_cols=60 Identities=8% Similarity=0.006 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 222 TYLLLMEALYKAGRDVEGDRYLNHVFKDRL---VS--NVNSYNMVIDCFCKVNMMDRATEICREMR 282 (504)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 282 (504)
++..+...|...|++++|...|++.+.... .+ ...++..+...|.. |++++|+..|++..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 445555556666666666666655543210 00 12334444555555 55555555555544
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=2.5e-07 Score=80.08 Aligned_cols=164 Identities=14% Similarity=0.077 Sum_probs=118.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHhHH
Q 048258 330 SMIDCLCRAHRFEDALDCLSEMVEWGV-PPNT----ITYNILIRSLCAIGDVARSLRLFQKMQADRIS-PD----IYTFN 399 (504)
Q Consensus 330 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 399 (504)
..+..+...|++++|...+++..+... .|+. ..+..+...+...|++++|...++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667888999999999998877422 1221 12334666677778999999999998874222 22 23688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCC-hhhH
Q 048258 400 ALIQSFCRMNKIEKAEKAFFSMLTL-----GLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQN----GCNPD-SYTS 468 (504)
Q Consensus 400 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~ 468 (504)
.+..+|...|++++|...|+++.+. +..+. ..++..+..+|...|++++|...+++..+. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999999999888741 11111 236778888999999999999999888742 11222 5678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048258 469 NLILETLVQQG-RFEEAHDIVKTSKE 493 (504)
Q Consensus 469 ~~l~~~~~~~g-~~~~a~~~~~~~~~ 493 (504)
..++.++.+.| .+++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999999 46999999988865
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.94 E-value=1.7e-07 Score=81.09 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNT-----ITYNILIRSLCAIGDVARSLRLFQKMQADRI---SPD--IY 396 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 396 (504)
.+...+..+...|++++|...+++..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555667777777777777776664222110 1233455556677788888887777764311 111 34
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC-Ch
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTL-GLRPD-----NFSYSALIKALIKSGRFDEAKQTFLSMEQNG----CNP-DS 465 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~ 465 (504)
+++.+...|...|++++|...|+++.+. ...|+ ..++..++.+|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777777888888888888777621 00122 1466777777888888888888887776421 111 14
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 048258 466 YTSNLILETLVQQGRFEEA-HDIVKTSKE 493 (504)
Q Consensus 466 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 493 (504)
.++..++.++.+.|++++| ..+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5667777788888888888 666766553
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=5e-08 Score=72.04 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+......+.+.|++++|+..|++..+.+ +.+..+|..+..++.+.|++++|+..|++..+.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444455555555444444433 3344444444444444444444444444444432 2234444444444444
Q ss_pred cCChhhHHHHHHHHHHc
Q 048258 93 AKRVAEVFRVLEIMKER 109 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~ 109 (504)
.|++++|++.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44444444444444443
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.89 E-value=1.8e-07 Score=76.75 Aligned_cols=126 Identities=5% Similarity=-0.021 Sum_probs=72.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA 372 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (504)
+..+...+...|++++|...++... .|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344455556666666666665542 3455566666666666666666666666665542 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 048258 373 IGDVARSLRLFQKMQADRISPDI----------------YTFNALIQSFCRMNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 424 (504)
.|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666665542 1111 45555555666666666666666666553
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=2.6e-06 Score=73.73 Aligned_cols=243 Identities=9% Similarity=-0.043 Sum_probs=142.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-C-Ch
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG-VVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNA-K-RV 96 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 96 (504)
..+.+..++|+..++.+...+ +-+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334445578899998888776 557777887777777777 5889999999988875 44777888777777666 6 78
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCC---
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH--------KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSM--- 165 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 165 (504)
++++++++.+.+... .|..+|..-..++.+.|.++ ++++.++++++..+. +..+|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 888888888887653 36667766666665555555 777777777776655 55666666655555554
Q ss_pred ----hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhh--HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHH
Q 048258 166 ----ASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNE--TCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEG 239 (504)
Q Consensus 166 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 239 (504)
++++++.+++....... |...|+.+-..+.+.|.... .... .|....-... .....
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~---------~~~~~~~~~~--------~~~~~ 281 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAI---------LPYTASKLNP--------DIETV 281 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHH---------GGGTC------------------
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccc---------cccccccccc--------cchhH
Confidence 45566666555543222 44444443333333332100 0000 0000000000 00111
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 240 DRYLNHVFKDR-----LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 240 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
......+.... ..+++..+..++..|...|+.++|.++++.+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11111111111 1346677777888888888888888888887644
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=2.5e-06 Score=73.90 Aligned_cols=243 Identities=10% Similarity=0.043 Sum_probs=138.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-ChH
Q 048258 56 CRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC-L-DPH 132 (504)
Q Consensus 56 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 132 (504)
...+..++|+++++.+...+ +-+..+|+.--.++...| .++++++.++.+...+. -+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChH
Confidence 34445568888888888775 345667777777777777 48888888888887753 3666777766666665 6 777
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH--------HHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhH
Q 048258 133 KAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS--------EAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNET 204 (504)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (504)
++++.++++++..+. +..+|+.-...+.+.+.++ ++++.++++.+..+. |...|+.....+.+.+....
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~- 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET- 219 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC-
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc-
Confidence 888888888777655 5555554444443333333 555555555554332 44455555444444443000
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-------------
Q 048258 205 CGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMM------------- 271 (504)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------- 271 (504)
+ ...++++++.+.+++...+. |...|+.+-..+.+.|..
T Consensus 220 --------------~-------------~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 220 --------------S-------------SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp --------------C-------------HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred --------------c-------------hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 0 00023444444444444333 444444433333333321
Q ss_pred -------HHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHH
Q 048258 272 -------DRATEICREMRDRD-----IAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSM 331 (504)
Q Consensus 272 -------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (504)
....+....+...+ ..++...+..++..|...|+.++|.++++.+.+.--+....-|+-.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 22333333332221 1357788899999999999999999999998754323333344433
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=9.6e-09 Score=78.29 Aligned_cols=103 Identities=12% Similarity=-0.055 Sum_probs=81.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
.+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..+..+ .++..+..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 355667777788888888888888888888764 44677888888888888888888888888887743 3566778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 123 HGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.++...|++++|.+.|++.+...+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888888888877654
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.85 E-value=1.3e-07 Score=69.77 Aligned_cols=109 Identities=7% Similarity=-0.074 Sum_probs=86.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 45 RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
...+......+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+. .+...+..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 4567777888889999999999999888764 45778888888888899999999999998888742 356778888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCcchhHHHHH
Q 048258 125 VFRCLDPHKAFELLIRFMEREPLTQKLVCNTL 156 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (504)
+...|++++|.+.|++.++..|. +...+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 88889999999888888887665 33444333
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=1.3e-07 Score=74.04 Aligned_cols=128 Identities=9% Similarity=-0.034 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGF 90 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..|..+...+...|+++.|...|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666667777777777777766554 4456666666677777777777777777766553 33556666666666
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHH
Q 048258 91 CNAKRVAEVFRVLEIMKERNVCPNEATV--RSLVHGVFRCLDPHKAFELLIRF 141 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 141 (504)
...|++++|...|+++.+... .+...+ ...+..+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 677777777777777666532 133333 22233345556666666655543
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=1.9e-06 Score=74.53 Aligned_cols=161 Identities=9% Similarity=0.028 Sum_probs=89.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcch-----hHHHHHHHHHhcCCChHHHHHHHHHHhhCCCC-CC----hhhHHHH
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQK-----LVCNTLLYRLSNNSMASEAAAILRKMGDRGYL-PE----SSTFDYT 191 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 191 (504)
+..+...|++++|...+++.....+..+. ..+..+...+...+++++|+..+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566677777777777776664332211 12223455556666777777777776653221 11 1246666
Q ss_pred HHHHHccCChhhHHHHHHHHHhc-----CCCc-cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC----CCC-CHHHHHH
Q 048258 192 VTCLVTGLDLNETCGILDTFIKR-----GVKP-RFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR----LVS-NVNSYNM 260 (504)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ 260 (504)
...|...|++++|+..++++.+. +..+ ...++..++..|...|++++|...+++.++.. ... -..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66667777777777777666631 1111 12355666666666666666666666655321 111 1345556
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHH
Q 048258 261 VIDCFCKVNM-MDRATEICREMR 282 (504)
Q Consensus 261 l~~~~~~~~~-~~~a~~~~~~~~ 282 (504)
+..++.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666665554
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=3.2e-08 Score=75.39 Aligned_cols=104 Identities=11% Similarity=-0.077 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...+..+...+.+.|++++|+..|+++.+.+ |.+...|..+..++...|++++|+..|++..+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34567888899999999999999999999886 6789999999999999999999999999999875 446788999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChh
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEA 116 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 116 (504)
+|...|++++|+..|++..+.. |+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999874 4543
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.82 E-value=1.8e-07 Score=69.00 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
...|..+...+...|+++.|...|+++.+.. +.+..++..+...+...|++++|+..++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4456666666666677777777666666543 3455666666666666666666666666666543 3345566666666
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 048258 90 FCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~ 109 (504)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666654
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.81 E-value=1.3e-07 Score=70.66 Aligned_cols=100 Identities=10% Similarity=0.012 Sum_probs=51.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...|..+...+...|+++.|+..|+++.+.. +.+..++..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 334445555555555555555555555555443 3344555555555555555555555555555432 22344455555
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555555443
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.81 E-value=1.7e-07 Score=73.21 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALI 441 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (504)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555666666666666666665542 2345566666666666666666666666666542 223455666666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 048258 442 KSGRFDEAKQTFLSMEQNGCNPDSYTSNL--ILETLVQQGRFEEAHDIVKTSK 492 (504)
Q Consensus 442 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 492 (504)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777666542 223333322 2333556677777777766654
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=1.1e-07 Score=70.76 Aligned_cols=119 Identities=8% Similarity=0.027 Sum_probs=68.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
+...+..+...+...|+++.|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34455556666666666666666666665543 3455566666666666666666666666665543 234555666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD 130 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (504)
++...|++++|...+++..+... .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666655531 234444445555444443
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=1.5e-06 Score=75.16 Aligned_cols=166 Identities=9% Similarity=0.021 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hhh
Q 048258 293 FNTLISGHCKDAEVHKTRELLVMLLECGFKPD-----KFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVP---PN--TIT 362 (504)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 362 (504)
+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34445556666777777777766655422211 112333455567778889999888888753211 11 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCC-Ccc
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQA---D-RISP--DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG----LRP-DNF 431 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~ 431 (504)
++.+...|...|++++|...++++.+ . ...+ ...++..+..+|...|++++|...+++.++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 78888889999999999999988863 2 1111 12578888889999999999999998887531 111 145
Q ss_pred cHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 048258 432 SYSALIKALIKSGRFDEA-KQTFLSMEQ 458 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 458 (504)
+|..+..+|...|++++| ...+++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 677888889999999999 777777653
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=9e-08 Score=77.79 Aligned_cols=156 Identities=12% Similarity=-0.097 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCcHHhHHHHHHHHHhcC
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----GY-APNVYTYTILIDGFCNAK 94 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 94 (504)
+...|++++|.+.++.+... ......++..+...+...|++++|+..+++.... +. +....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35678888888855555432 1345667788888888889999888888887651 11 123456777777888888
Q ss_pred ChhhHHHHHHHHHHc----CCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCc--chhHHHHHHHHHhcC
Q 048258 95 RVAEVFRVLEIMKER----NVCP--NEATVRSLVHGVFRCLDPHKAFELLIRFMERE---PLT--QKLVCNTLLYRLSNN 163 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~ 163 (504)
++++|...+++..+. +..+ ....+..+...+...|++++|...+++..... ..+ ...++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888888888877653 1011 12346666777777788888877777765421 111 112334455555556
Q ss_pred CChHHHHHHHHHH
Q 048258 164 SMASEAAAILRKM 176 (504)
Q Consensus 164 ~~~~~a~~~~~~~ 176 (504)
|++++|.+.+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 6666665555554
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=4.5e-08 Score=74.74 Aligned_cols=112 Identities=7% Similarity=-0.096 Sum_probs=76.6
Q ss_pred HHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 048258 32 KFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV 111 (504)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 111 (504)
.|+++.... +.+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|+..|++....+.
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344544443 3345566667777777788888888887777654 44666777777777777888888888777776642
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
.+...+..+..++...|++++|.+.|++.....|
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3556667777777777777777777777766544
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=7.5e-08 Score=82.64 Aligned_cols=196 Identities=9% Similarity=-0.019 Sum_probs=134.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456788889999999999999999999998875 5588999999999999999999999999999875 45788899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.++...|++++|...|++..+.+.. +...+...+....+. .++... ..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999998875311 111111111111111 111111 11222222223333333322 2 368899
Q ss_pred HHHHHHHHHhhCCCCCChhhH-HHHHHHHHcc-CChhhHHHHHHHHHhc
Q 048258 168 EAAAILRKMGDRGYLPESSTF-DYTVTCLVTG-LDLNETCGILDTFIKR 214 (504)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~~~ 214 (504)
+|.+.++...+. .|+.... ..+...+.+. +.++++.++|..+.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888765 4444333 3333344444 6688899999887654
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=3e-07 Score=76.79 Aligned_cols=187 Identities=9% Similarity=-0.116 Sum_probs=86.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHHhHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCCh--------------
Q 048258 57 RIGVVDEALRLVKQMEGLGYAPNVYTYTIL-------IDGFCNAKRVAEVFRVLEIMKERNVCPNE-------------- 115 (504)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------------- 115 (504)
..++...|.+.|.++.+.. +-....|..+ ..++.+.++..+++..+....+. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 4566777777777776653 3345566655 34444444555555444444331 1111
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC--h
Q 048258 116 --------ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE--S 185 (504)
Q Consensus 116 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 185 (504)
.....+...+...|++++|.+.|+.+...+|. +. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 12223444555556666666666555544332 11 33334445555555666555555333221 010 1
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKP--RFSTYLLLMEALYKAGRDVEGDRYLNHVFKD 249 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (504)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 133344444444455555555544444322112 2223344444444444555554444444443
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=8.4e-08 Score=77.99 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=79.2
Q ss_pred cCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCH
Q 048258 302 KDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEW----GV-PPNTITYNILIRSLCAIGDV 376 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 376 (504)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444332 12234455666666666666666666666665541 11 11223455556666666666
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCC
Q 048258 377 ARSLRLFQKMQAD----RISP--DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD----NFSYSALIKALIKSGR 445 (504)
Q Consensus 377 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 445 (504)
++|...+++..+. +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665432 1011 123455555566666666666666665553210 011 1123445555556666
Q ss_pred hhHHHHHHHHHHh
Q 048258 446 FDEAKQTFLSMEQ 458 (504)
Q Consensus 446 ~~~a~~~~~~~~~ 458 (504)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555554
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=2.6e-07 Score=69.08 Aligned_cols=118 Identities=9% Similarity=0.052 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 048258 359 NTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIK 438 (504)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 438 (504)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44456666667777777777777777766642 3355566667777777777777777777777642 234556666777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 439 ALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 439 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
++...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777776642 223445555555555544
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=4.9e-08 Score=74.51 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=88.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 048258 346 DCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 425 (504)
..++++.... +.+...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|+++++..
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555542 2345567778888899999999999999988763 4467788888889999999999999999998863
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 426 LRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+.+...+..+..++...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335677888888999999999999999998874
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=6.6e-08 Score=76.65 Aligned_cols=125 Identities=13% Similarity=0.085 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH-HHhcCCh--
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG-FCNAKRV-- 96 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 96 (504)
+...|+++.|+..++...+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777777777776654 5566777777777777777777777777776653 3356666666666 5667776
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 97 AEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
++|...++++.+.+. .+...+..+..++...|++++|...++++....|.
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 777777777776632 24556666677777777777777777777666554
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=3.9e-07 Score=67.09 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 048258 361 ITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKAL 440 (504)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (504)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344555555555555555555555555432 2234455555555556666666666666555532 22344455555666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048258 441 IKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL 475 (504)
Q Consensus 441 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (504)
...|++++|...++++.+.. +.+...+..+..++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666665532 22333444444443
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=8.8e-07 Score=74.04 Aligned_cols=191 Identities=7% Similarity=-0.110 Sum_probs=145.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCc------------
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNIL-------IHGICRIGVVDEALRLVKQMEGLGYAPN------------ 79 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~~------------ 79 (504)
.+ ..++...|.+.|.++...+ +-....|..+ ...+.+.++..+++..+..-.+. .|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLY 91 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTT
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcc
Confidence 44 5899999999999999887 6678888887 56666666677777766665542 221
Q ss_pred ----------HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCc-
Q 048258 80 ----------VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLT- 148 (504)
Q Consensus 80 ----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 148 (504)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......+.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 2234456677889999999999999988754 444466677778999999999999998665432111
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHccCChhhHHHHHHHHHhcC
Q 048258 149 QKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPE--SSTFDYTVTCLVTGLDLNETCGILDTFIKRG 215 (504)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (504)
....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 134677788999999999999999999975433253 3466777888999999999999999999874
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=3.9e-07 Score=67.36 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=72.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
++..|......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34556667777777788888888887777665 5567777777777777788888887777777664 345667777777
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 048258 89 GFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~ 109 (504)
++...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777777665
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=1.4e-07 Score=80.97 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048258 220 FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISG 299 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (504)
...+..++..+...|++++|...|..++...+. +...+..+..++.+.|++++|+..+++..+... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 344555555666666666666666666555433 555566666666666666666666666655432 244555566666
Q ss_pred HhcCCchHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 048258 300 HCKDAEVHKTRELLVMLLECGFKPDK-FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVAR 378 (504)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 378 (504)
+...|++++|...+....+.. |+. ..+...+....+ ..++.. +........+.+......+... ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666554421 110 001011111111 111111 1112222233344333333222 2577777
Q ss_pred HHHHHHHHHhCCCCCCHH-hHHHHHHHHHcc-CCHHHHHHHHHHHHh
Q 048258 379 SLRLFQKMQADRISPDIY-TFNALIQSFCRM-NKIEKAEKAFFSMLT 423 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 423 (504)
|.+.+++..+. .|+.. ....+...+... +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777777664 34332 333333334443 557777777777664
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=3.1e-07 Score=81.05 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=76.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN--------------TITYNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
+...+..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++++.+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455667777777788888888888888777532211 245555666666666666666666666554
Q ss_pred CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH-HHHHHHHH
Q 048258 390 RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEA-KQTFLSME 457 (504)
Q Consensus 390 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 457 (504)
. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+..++...|++++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2344555555666666666666666666665542 12334455555555555555555 33444444
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.5e-07 Score=74.49 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=52.5
Q ss_pred cCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH--HH
Q 048258 302 KDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRS-LCAIGDV--AR 378 (504)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 378 (504)
..|++++|...++...+.. +.+...+..+..+|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3444555555555444332 1234444445555555555555555555554432 2233344444444 4444444 55
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 048258 379 SLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 423 (504)
|...++++.+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555544431 22233444444444455555555555555444
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=5.1e-07 Score=67.09 Aligned_cols=114 Identities=7% Similarity=0.026 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIK 442 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (504)
+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444443321 2233344444444444444444444444444431 1123334444444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 443 SGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 443 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 445555555544444431 123334444444444443
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=4.9e-07 Score=79.71 Aligned_cols=150 Identities=11% Similarity=-0.037 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------HHhHHHHHHH
Q 048258 24 NSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN--------------VYTYTILIDG 89 (504)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 89 (504)
++++.|+..|+...+.. +.+...+..+...+.+.|++++|+..|++..+...... ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554443321 23455666666667777777777777776665531111 3566667777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEA 169 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 169 (504)
|.+.|++++|+..++++.+.. +.+...+..+..++...|++++|.+.|++.++..|. +...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776653 235566666777777777777777777777766554 445666666666667776666
Q ss_pred -HHHHHHH
Q 048258 170 -AAILRKM 176 (504)
Q Consensus 170 -~~~~~~~ 176 (504)
...+..|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3344444
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=3.9e-07 Score=65.58 Aligned_cols=100 Identities=8% Similarity=-0.056 Sum_probs=68.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHHhHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAP--NVYTYTIL 86 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 86 (504)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556667777777777777777777776654 4456667777777777777777777777776653 33 46666667
Q ss_pred HHHHHhc-CChhhHHHHHHHHHHcC
Q 048258 87 IDGFCNA-KRVAEVFRVLEIMKERN 110 (504)
Q Consensus 87 ~~~~~~~-g~~~~a~~~~~~~~~~~ 110 (504)
..++... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777 77777777777776653
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.66 E-value=4e-05 Score=66.07 Aligned_cols=213 Identities=10% Similarity=0.022 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC--c
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNM----------MDRATEICREMRDRDIAPNLVTFNTLISGHCKDA--E 305 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 305 (504)
+|+..+..++..+|. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-...+...+ .
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCccc
Confidence 455555555555443 34444432222222221 45666666666655433 5555555555555555 3
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR-FEDALDCLSEMVEWGVPPNTITYNILIRSLCAI----------- 373 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 373 (504)
+++++..++.+.+... -+...|+.-..++...|. ++++++.+..+++..+ -|...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccc
Confidence 5666666666665543 255555555555555565 4666777766666542 3555665555554443
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 048258 374 ---GDVARSLRLFQKMQADRISPDIYTFNALIQSFCRM-----------NKIEKAEKAFFSMLTLGLRPDNFSYSALIKA 439 (504)
Q Consensus 374 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (504)
+.++++++.+.+..... +-|...|+.+-..+... +.++++++.++++.+. .|+. .|..+..+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHH
Confidence 33566666666666542 34555665554444433 3466777777777764 4553 34322222
Q ss_pred HH-----hcCChhHHHHHHHHHHh
Q 048258 440 LI-----KSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 440 ~~-----~~g~~~~a~~~~~~~~~ 458 (504)
+. ..|..+++...+.++.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHH
Confidence 11 24556667777777766
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=3.8e-07 Score=67.44 Aligned_cols=98 Identities=8% Similarity=0.025 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HHhHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APN----VYTYT 84 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 84 (504)
..+..+...+.+.|++++|+..|+++.+.+ |.+..+|..+..+|...|++++|++.+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666777777777777777777777665 55666777777777777777777777777654320 011 23455
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.+..++...|++++|++.|++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666667777777777766654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=1.2e-06 Score=63.64 Aligned_cols=98 Identities=12% Similarity=-0.015 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
+..+..+...+...|+++.|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4456666667777777777777777766554 4456666666667777777777777777766553 3345566666666
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 048258 90 FCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~ 109 (504)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66667777777777666654
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=2.9e-07 Score=69.77 Aligned_cols=96 Identities=8% Similarity=-0.099 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 048258 47 TYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVF 126 (504)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (504)
.+..+...+.+.|++++|+..|++....+ +.+...|..+..++...|++++|+..|++..+.+. .++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 33444444455555555555555544432 22444444455555555555555555555544421 23334444455555
Q ss_pred hcCChHHHHHHHHHHHhc
Q 048258 127 RCLDPHKAFELLIRFMER 144 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~ 144 (504)
..|++++|.+.|++....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555554443
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.64 E-value=2.7e-07 Score=69.93 Aligned_cols=97 Identities=10% Similarity=-0.103 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGF 90 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..+..+...+.+.|++++|+..|+++...+ +.+...|..+..++...|++++|+..|++..... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555666677777777777777766654 4566666667777777777777777777776654 33555666666677
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 048258 91 CNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~ 109 (504)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.62 E-value=4.6e-07 Score=66.96 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----cccHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL--RPD----NFSYSA 435 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 435 (504)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555532 22344555555555566666666665555554210 000 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
+..++...|++++|++.|++.+.. .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 555556666666666666666552 344443
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=6.7e-05 Score=64.72 Aligned_cols=231 Identities=7% Similarity=-0.100 Sum_probs=105.3
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC--
Q 048258 28 LAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV----------VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR-- 95 (504)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 95 (504)
+|+..++.+...+ |-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++...|+
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5555555555543 3344444433322222222 345555555555443 2344555554444444442
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLD-PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILR 174 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 174 (504)
+++++..++.+.+... -|..+|+.-..++...|. ++++++.+++++...|. +..+|+.....+...+....+
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~----- 198 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS----- 198 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-------
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc-----
Confidence 4555555555555432 244455544444445554 35555555555555443 333443333222221000000
Q ss_pred HHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-----------CCcHHHHHHH
Q 048258 175 KMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKA-----------GRDVEGDRYL 243 (504)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~ 243 (504)
++ ..-...+.++++++.+....... +-|..+++-+-..+.+. +.++++++.+
T Consensus 199 --------~~--------~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 199 --------GP--------QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred --------cc--------ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 00 00000022445555555555442 33444443332222222 3456777777
Q ss_pred HHHHhCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCC
Q 048258 244 NHVFKDRLVSNVNSYNMVID---CFCKVNMMDRATEICREMRDRD 285 (504)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 285 (504)
+++.+..+. +...+..++. .....+..+++...+.++.+.+
T Consensus 262 ~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 262 KELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 777776654 3333322221 2224566778888888887763
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.3e-06 Score=64.54 Aligned_cols=100 Identities=8% Similarity=-0.051 Sum_probs=80.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.+. .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 34567777888888899999999998888764 44677888888888888999999999988888742 35667888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 048258 124 GVFRCLDPHKAFELLIRFMERE 145 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
++...|++++|.+.|++.....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888887765
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=8.1e-08 Score=77.72 Aligned_cols=151 Identities=9% Similarity=-0.057 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----------------
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---------------- 79 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------- 79 (504)
.+......|+++.+.+.|+...... ......+..+...+...|++++|+..|++..+... .+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHH
Confidence 3444555667777777666543321 22445667777888888899999998888876531 12
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHH
Q 048258 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYR 159 (504)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (504)
...+..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++.....|. +...+..+..+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 2567777777778888888888888887763 235667777777788888888888888887776554 44555555555
Q ss_pred HhcCCChHHHH
Q 048258 160 LSNNSMASEAA 170 (504)
Q Consensus 160 ~~~~~~~~~a~ 170 (504)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.60 E-value=1e-06 Score=68.60 Aligned_cols=101 Identities=9% Similarity=-0.058 Sum_probs=81.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345667778888888888888888888888765 5577888888888888888888888888888764 44677888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERN 110 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~ 110 (504)
.+|...|++++|+..|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888887763
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.59 E-value=4.3e-07 Score=67.54 Aligned_cols=110 Identities=6% Similarity=0.051 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCc----HHhH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGY--APN----VYTY 83 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 83 (504)
+..|..+...+...|+++.|...|+++.+.. +.+...+..+...+...|++++|+..+++...... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567777788888888888888888887665 55677777888888888888888888888766521 111 5667
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
..+..++...|++++|.+.|+.+.+.. |+......+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 777777778888888888888877753 3544444433
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=5.6e-07 Score=65.79 Aligned_cols=96 Identities=10% Similarity=-0.016 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC 91 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
.+..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666777777777777777776654 4566667777777777777777777777776654 335566666777777
Q ss_pred hcCChhhHHHHHHHHHHc
Q 048258 92 NAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~ 109 (504)
..|++++|+..+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776654
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=1.2e-06 Score=65.77 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=57.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
.++..|..+...+...|+++.|+..|+...+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345555566666666666666666666655544 3445556666666666666666666666665543 23455555555
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 048258 88 DGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666655543
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.56 E-value=3.9e-06 Score=60.81 Aligned_cols=102 Identities=9% Similarity=-0.065 Sum_probs=75.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVH 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (504)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 34566677777888888888888888887653 34667777777788888888888888888877642 35566777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC
Q 048258 124 GVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
++...|++++|.+.+++.....|.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 778888888888888877776554
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=8.6e-07 Score=63.72 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=47.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--ChhhHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP--DSYTSNLILET 474 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 474 (504)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555555432 1233344445555555555555555555555431 12 24445555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 048258 475 LVQQ-GRFEEAHDIVKTSKER 494 (504)
Q Consensus 475 ~~~~-g~~~~a~~~~~~~~~~ 494 (504)
+... |++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555544
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=1.3e-06 Score=70.45 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=52.1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 048258 396 YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETL 475 (504)
Q Consensus 396 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (504)
..+..+..+|...|++++|...++++++.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455566666666667777777666666642 2334556666666666777777777776666542 22445556666666
Q ss_pred HhcCCHHHHH-HHHHHHHHc
Q 048258 476 VQQGRFEEAH-DIVKTSKER 494 (504)
Q Consensus 476 ~~~g~~~~a~-~~~~~~~~~ 494 (504)
...++.+++. ..+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 6665555555 444444443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=2.8e-06 Score=66.10 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=89.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+... .+...+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3456778888889999999999999999998874 44788899999999999999999999999988752 357788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCc
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLT 148 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (504)
..++...|++++|.+.|++.+...|..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999988876653
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=2.7e-06 Score=63.86 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=82.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 048258 357 PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSAL 436 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 436 (504)
+.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++++++.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3466788888889999999999999999988763 4457788888888999999999999999988863 3346678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc
Q 048258 437 IKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
..++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999988764
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.8e-06 Score=63.37 Aligned_cols=98 Identities=10% Similarity=-0.073 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD----RFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYT 84 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
+...+..+...+...|+++.|+..|++..+.. |+ ...+..+...+...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34445555555555555555555555555442 22 3444445555555555555555555554432 22344444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 85 ILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4555555555555555555555443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=9.5e-06 Score=61.66 Aligned_cols=103 Identities=12% Similarity=-0.037 Sum_probs=85.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN----VYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEAT 117 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 117 (504)
+.+...+..+...+...|++++|+..|++..+.. |+ ...+..+..+|...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4467788888899999999999999999998863 44 6778888888999999999999999988774 235677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+..+..++...|++++|...|++.....|.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 888888899999999999999998877654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=1.2e-06 Score=65.07 Aligned_cols=96 Identities=11% Similarity=0.155 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----cccHHH
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL--RPD----NFSYSA 435 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 435 (504)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554432 22344455555555555555555555555544310 011 334455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
+..++...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55556666666666666666655
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.43 E-value=2.6e-06 Score=62.24 Aligned_cols=97 Identities=9% Similarity=-0.035 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFR 127 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (504)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.+. .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4556667778888888888888887764 34677777888888888888888888888877642 355677777778888
Q ss_pred cCChHHHHHHHHHHHhcCC
Q 048258 128 CLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~ 146 (504)
.|++++|...+++.++..|
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 8888888888887776544
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.7e-05 Score=70.68 Aligned_cols=165 Identities=8% Similarity=-0.027 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCh----hhHHHHHHHHhcCCchHHHHHHHHHHHH----CCCCc-cHHH
Q 048258 258 YNMVIDCFCKVNMMDRATEICREMRDRD-IAPNL----VTFNTLISGHCKDAEVHKTRELLVMLLE----CGFKP-DKFT 327 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 327 (504)
+..+...|...|++++|.+.+..+...- ..++. .+.+.+...+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555443320 00011 1112222233344555555555544432 11111 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HH
Q 048258 328 FNSMIDCLCRAHRFEDALDCLSEMVEW--GV--PP-NTITYNILIRSLCAIGDVARSLRLFQKMQAD----RISPD--IY 396 (504)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~ 396 (504)
+..+...+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++.... ..++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 455555566666666666666555431 00 11 1224555555666666666666666554431 11111 12
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 048258 397 TFNALIQSFCRMNKIEKAEKAFFSML 422 (504)
Q Consensus 397 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 422 (504)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444555566666655554443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=7.5e-06 Score=60.56 Aligned_cols=95 Identities=11% Similarity=-0.107 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---HHhHHHH
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDR---FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---VYTYTIL 86 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 86 (504)
+..+...+.+.|+++.|...|+.+.+.. +.+. ..+..+..++...|++++|+..|+++.+.. +.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 3445666777777778877777777653 2233 466666777777777777777777776653 222 4556666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc
Q 048258 87 IDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
..++...|++++|...|+.+.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777765
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.1e-05 Score=74.30 Aligned_cols=198 Identities=10% Similarity=0.002 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHhcCCchHHHHHHHHHHHHCC-CCc
Q 048258 261 VIDCFCKVNMMDRATEICREMRDRDIAPNL----------------VTFNTLISGHCKDAEVHKTRELLVMLLECG-FKP 323 (504)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 323 (504)
-.+.+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+.+.- ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345677889999999999998876432111 124556666777777777777666654311 011
Q ss_pred cHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 048258 324 DKF----TFNSMIDCLCRAHRFEDALDCLSEMVEW----GVPP-NTITYNILIRSLCAIGDVARSLRLFQKMQAD----R 390 (504)
Q Consensus 324 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~ 390 (504)
+.. +.+.+...+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++... +
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 1222222333456667776666665431 1111 2335556666666677777776666665432 1
Q ss_pred CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCC-C-C--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 391 ISP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL--GLR-P-D--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 391 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
-.+ ....+..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 1335566666666667777776666665532 111 1 0 12334444445556666666666666554
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=3.3e-06 Score=78.25 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCN 92 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
+..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444556778899999999999998875 5678899999999999999999999999999875 4567889999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 048258 93 AKRVAEVFRVLEIMKERNVCPNEATVRSLVHG--VFRCLDPHKAFELLI 139 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 139 (504)
.|++++|++.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999988742 233455555555 778899999999888
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=8.8e-06 Score=63.10 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVD--------Q---------CKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
+..+......+.+.|+++.|+..|.+..+. . .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788888999999999999888764 1 02233566667777777777777777777776
Q ss_pred hCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 73 GLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 345667777777777777777777777777765
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=1.2e-05 Score=59.52 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----cccHHH
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQADRISPDI---YTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD----NFSYSA 435 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 435 (504)
+..+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|...|+++.+.. |+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 4456677788899999999998888753 2223 467777888888899999999998888753 33 445677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+..++...|++++|...++++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888889999999999888875
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=6.6e-06 Score=63.67 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-cH
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-PD----RFTYNILIHGICRIGVVDEALRLVKQMEGL----GYAP-NV 80 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 80 (504)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777777777777777776543100 11 135566666777777777777777765432 1000 13
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERN----VC-PNEATVRSLVHGVFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 142 (504)
.++..+...+...|++++|...+++..+.. .. .....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345556666666777777777666655321 00 011234444555555555555555555543
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=3.2e-06 Score=65.52 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----cc
Q 048258 362 TYNILIRSLCAIGDVARSLRLFQKMQADRI---SP--DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGL-RPD----NF 431 (504)
Q Consensus 362 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 431 (504)
++..+...+...|++++|...+++..+... .+ ....+..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555555555555555443200 00 012455566666666777777766666554210 011 23
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN----GCNP-DSYTSNLILETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
.+..+...+...|++++|...+++..+. +..+ ...++..++..+...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556667777777888877777776532 1111 1345667788888888888888888887754
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=7.5e-06 Score=75.54 Aligned_cols=150 Identities=12% Similarity=0.084 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------hhhHHHHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPN--------------TITYNILIRSL 370 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 370 (504)
++++|...++...+.. +-....+..+...+.+.|++++|+..|+++++...... ...|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444332211 11345677777888888999999999988887532211 45677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 048258 371 CAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+..++.+.++++++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888877777777653 3356677777777777777777777777777652 223455666666777777666654
Q ss_pred H-HHHHHH
Q 048258 451 Q-TFLSME 457 (504)
Q Consensus 451 ~-~~~~~~ 457 (504)
+ .++.|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3 344444
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=1.1e-05 Score=71.89 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh----------------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSV----------------DQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
.|..+...+.+.|+++.|+..|+++.+ .. +.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 356667777777888888877777765 11 2234455555555566666666666666665543
Q ss_pred CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 048258 76 YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPH 132 (504)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (504)
+.+...|..+..+|...|++++|+..|+++.+... .+...+..+..++...++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence 23455555555556666666666666665555421 13334444444444433333
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.1e-05 Score=74.30 Aligned_cols=151 Identities=9% Similarity=-0.035 Sum_probs=96.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc---------------HHhHHHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN---------------VYTYTILI 87 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~ 87 (504)
.++++.|+..|+...+.. +.....|..+...+.+.|++++|+..|++..+.. +.+ ...|..+.
T Consensus 247 l~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 344555555554443332 2345566667777777777777777777766542 112 46677777
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChH
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMAS 167 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (504)
.+|.+.|++++|+..++++.+... .+...+..+..+|...|++++|...|++.++..|. +...+..+..++...++.+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888777642 35667777777888888888888888887777654 4566667777777777776
Q ss_pred HHHH-HHHHHh
Q 048258 168 EAAA-ILRKMG 177 (504)
Q Consensus 168 ~a~~-~~~~~~ 177 (504)
++.+ .+..|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 6653 445554
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=2.6e-06 Score=61.86 Aligned_cols=86 Identities=10% Similarity=-0.097 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHhhhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHH
Q 048258 23 SNSIDLAYLKFQQMSVDQ--CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
.|++++|+..|+++.+.+ -+.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466677777777776652 13345556666667777777777777777776653 334666666667777777777777
Q ss_pred HHHHHHHHc
Q 048258 101 RVLEIMKER 109 (504)
Q Consensus 101 ~~~~~~~~~ 109 (504)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766655
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=4.5e-05 Score=57.03 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHH
Q 048258 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAE 415 (504)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 415 (504)
++++|+..|++..+.+. ++. . +...|...+..++|.+.|++..+.+ +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34555555555554431 111 1 4444444444555555555554432 33444444444444 44555555
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhc
Q 048258 416 KAFFSMLTLGLRPDNFSYSALIKALIK----SGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 459 (504)
.+|++..+.| +...+..+...|.. .+++++|.+++++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555433 23334444444444 44455555555555444
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.22 E-value=1.3e-05 Score=71.55 Aligned_cols=91 Identities=8% Similarity=0.042 Sum_probs=64.7
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 048258 394 DIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILE 473 (504)
Q Consensus 394 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 473 (504)
+...|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..++++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777778888888888888888888753 2345667777788888888888888888887752 225556666777
Q ss_pred HHHhcCCHHHHHH
Q 048258 474 TLVQQGRFEEAHD 486 (504)
Q Consensus 474 ~~~~~g~~~~a~~ 486 (504)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666543
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=6.2e-06 Score=76.42 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=72.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
.+.+.|++++|+..+++..+.. +.+...|..+..++.+.|++++|+..++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4456677777777777776652 3346667777777777777777777777777653 3345566777777777777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCChhHHHHHHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKA--LIKSGRFDEAKQTFL 454 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 454 (504)
|.+.|+++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777642 1223344444444 666677777777776
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=1.7e-05 Score=59.60 Aligned_cols=62 Identities=24% Similarity=0.067 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCC-ChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQN-----GCNP-DSYTS----NLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
.|..+..++.+.|++++|+..+++.++. .+.| +...| ...+.++...|++++|...|+++.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555555566666666666666665552 0134 23355 5666666666666666666666654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=2.5e-05 Score=60.52 Aligned_cols=103 Identities=13% Similarity=0.019 Sum_probs=80.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGL--------G---------YAPNVYTYTILIDGFCNAKRVAEVFRVLEIM 106 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 106 (504)
....+......+.+.|++++|+..|++.... . .+.+...|..+..+|.+.|++++|+..++..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888999999999999999998764 0 0223457777888888888888888888888
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 107 KERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
.+.+ +.+...+..+..++...|++++|...|++.+...|.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8774 335667888888888888888888888888877654
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=2.4e-05 Score=58.83 Aligned_cols=97 Identities=15% Similarity=0.053 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-----CH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 048258 11 RLYNAVIDALVKSNSIDLAYLKFQQMSVDQCK-P-----DR-----FTYNILIHGICRIGVVDEALRLVKQMEGL----- 74 (504)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 74 (504)
..+......+.+.|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34556667777788888888888887765311 0 11 25566666666666666666666665553
Q ss_pred --CCCCcHHhH----HHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 75 --GYAPNVYTY----TILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 75 --~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
. +-+...| .....++...|++++|+..|++..+
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2234445 5555555555555555555555544
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=7.9e-06 Score=59.24 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=56.2
Q ss_pred cCChhhHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048258 198 GLDLNETCGILDTFIKRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRAT 275 (504)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (504)
.|++++|+..+++.++.+ .+.+...+..+..++...|++++|...++++++..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666653 1334556677777777777777777777777766554 5666777777777777777777
Q ss_pred HHHHHHHhC
Q 048258 276 EICREMRDR 284 (504)
Q Consensus 276 ~~~~~~~~~ 284 (504)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=5.9e-06 Score=72.82 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHH-H
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYR-L 160 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 160 (504)
.|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|.+.|++.....|. +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 56667777777788888888877777663 235567777777777888888888888777766554 33444444443 2
Q ss_pred hcCCChHHHHHHHHHHhhC
Q 048258 161 SNNSMASEAAAILRKMGDR 179 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~~~~ 179 (504)
...+..+++...|.++...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3345566677777777654
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=6.3e-06 Score=59.06 Aligned_cols=94 Identities=12% Similarity=0.020 Sum_probs=65.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-------H
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPN-------V 80 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~ 80 (504)
++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 345667777788888888888888888877665 5567777778888888888888888888887663 33 4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLE 104 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~ 104 (504)
..+..+..++...|+++.|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 455555555555565555544433
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=0.00025 Score=66.96 Aligned_cols=173 Identities=11% Similarity=-0.006 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCc----------hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-
Q 048258 271 MDRATEICREMRDRDIAPNLVTFNTLISGHCKDAE----------VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAH- 339 (504)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 339 (504)
.++|++.++.+...++. +..+|+.--..+...++ ++++.+.++.+.+...+ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666665555322 33444443333333333 66667777766665433 5556666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---------
Q 048258 340 -RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIG-DVARSLRLFQKMQADRISPDIYTFNALIQSFCRM--------- 408 (504)
Q Consensus 340 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 408 (504)
+++++++.++++.+... -+..+|+.-..++.+.| .++++++.++++.+.. +-+...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 55777777777777643 36667777666666777 6777777777777654 33556666655555442
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 048258 409 -----NKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDE 448 (504)
Q Consensus 409 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (504)
+.++++.+.+.+++... +-+...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888753 3345667766666666665433
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=0.00018 Score=53.66 Aligned_cols=110 Identities=15% Similarity=0.016 Sum_probs=59.1
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCA----IGDVARSL 380 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 380 (504)
++++|.+.|++..+.|. ++.. +...|...+.+++|+..|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 44555555555555442 1221 4444444455555666666555543 44455555555555 55666666
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 048258 381 RLFQKMQADRISPDIYTFNALIQSFCR----MNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 425 (504)
..|++..+.+ +...+..|...|.. .+++++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 44445555555555 556666666666666554
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.6e-05 Score=70.03 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 398 FNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 398 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|+++.+
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444431 11233444444444444444444444444443
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.06 E-value=0.00025 Score=66.96 Aligned_cols=125 Identities=8% Similarity=-0.069 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--
Q 048258 27 DLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV----------VDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK-- 94 (504)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 94 (504)
++|+..++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.|
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34455555555443 3344445444444444444 555555555555443 224445555444444555
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCcchhHHHH
Q 048258 95 RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL-DPHKAFELLIRFMEREPLTQKLVCNT 155 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
+++++++.++++.+.+. -+..+|.....++.+.| .++++++.++++++..+. +..+|+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~ 183 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY 183 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHH
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHH
Confidence 34555555555555432 24444544444444444 455555555555544433 3333433
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=2.8e-05 Score=71.55 Aligned_cols=124 Identities=9% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CC---CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCC----cccHHH
Q 048258 370 LCAIGDVARSLRLFQKMQAD---RI---SP-DIYTFNALIQSFCRMNKIEKAEKAFFSMLTL---GLRPD----NFSYSA 435 (504)
Q Consensus 370 ~~~~g~~~~a~~~~~~~~~~---~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~----~~~~~~ 435 (504)
+...|++++|+.++++..+. -+ .| ...+++.|..+|...|++++|..++++.++. -+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655432 01 11 1335666666666666666666666665531 11122 234566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh-----cCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 436 LIKALIKSGRFDEAKQTFLSMEQ-----NGC-NP-DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
|...|...|++++|..+++++.+ .|. .| ...+...+..++...+.+++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777776666666542 121 11 122344555666666777777777777665
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=6.7e-05 Score=51.16 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 10 TRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555555666666666665555443 3345555555555555566666665555555442 2234444444443
Q ss_pred H
Q 048258 90 F 90 (504)
Q Consensus 90 ~ 90 (504)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=4e-05 Score=55.21 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 28 LAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
.|+..|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677777777665 5577888888888888888888888888888764 4457778888888888888888888888877
Q ss_pred Hc
Q 048258 108 ER 109 (504)
Q Consensus 108 ~~ 109 (504)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.92 E-value=4.1e-05 Score=57.42 Aligned_cols=99 Identities=4% Similarity=-0.056 Sum_probs=75.7
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 20 LVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVV----------DEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
..+.+.+++|++.++...+.+ +.+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 345677899999999998876 67888898888888887765 58999999988875 3467788888888
Q ss_pred HHhcC-----------ChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 048258 90 FCNAK-----------RVAEVFRVLEIMKERNVCPNEATVRSLV 122 (504)
Q Consensus 90 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 122 (504)
|...| ++++|++.|++..+. .|+...|...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88764 788888888888876 45555444333
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=3.7e-05 Score=54.88 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
...+..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|+..+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344555555555666666666666555542 22344455555556666666666666666655
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.83 E-value=9.9e-05 Score=67.93 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 327 TFNSMIDCLCRAHRFEDALDCLSEM 351 (504)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (504)
+++.+..+|...|++++|..++++.
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444444555555554444443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.00021 Score=48.61 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=46.1
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 048258 395 IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILET 474 (504)
Q Consensus 395 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 474 (504)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455555566666666666666666666542 2234455566666666666666666666666542 2234455555555
Q ss_pred HHh
Q 048258 475 LVQ 477 (504)
Q Consensus 475 ~~~ 477 (504)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=4.3e-05 Score=57.32 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 048258 338 AHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGD 375 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (504)
.+.+++|+..++...+.. +.+...|..+..++...++
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 344555555555555543 3345555555555555544
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=0.00025 Score=50.96 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 048258 378 RSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME 457 (504)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 457 (504)
.|...|+++.+.. +.+...+..+...+...|++++|...|+++++.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778888888763 4467788899999999999999999999999863 3346678889999999999999999999988
Q ss_pred hc
Q 048258 458 QN 459 (504)
Q Consensus 458 ~~ 459 (504)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.69 E-value=2.1e-07 Score=81.72 Aligned_cols=215 Identities=12% Similarity=0.089 Sum_probs=137.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHH
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILID 88 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
.+.+|+.+.++..+.+...+|+.-|-+ ..|+..|..++.+..+.|.+++-+..+.-.++. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 345788888888888888888765433 236667888899988999999998888777665 345566678888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--------------------CCCc
Q 048258 89 GFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER--------------------EPLT 148 (504)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~ 148 (504)
+|++.++..+..+++. .||..-...+..-|...|.++.|.-+|..+... ....
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8998888665443321 255555666677777777777666555443221 1123
Q ss_pred chhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHH
Q 048258 149 QKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLME 228 (504)
Q Consensus 149 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (504)
+..+|..+-.+|...+++.-|.-.--.+.- ....+..++..|-..|-+++.+.+++..... -......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 556677777777777777666554333332 1222334555667777888888888776643 1345566777766
Q ss_pred HHHhcCCcHHHHHHHHH
Q 048258 229 ALYKAGRDVEGDRYLNH 245 (504)
Q Consensus 229 ~~~~~~~~~~a~~~~~~ 245 (504)
.|++- ++++..+.++.
T Consensus 272 LYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHSS-CTTHHHHHHTT
T ss_pred HHHhc-CHHHHHHHHHH
Confidence 66654 45555555444
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.64 E-value=0.00025 Score=49.38 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=32.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 44 DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555555555443 22344455555555555555555555555543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.0009 Score=57.99 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 048258 112 CPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTF 188 (504)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 188 (504)
+.++.++..+...+...|++++|...+++.+..++ +...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 34555666666556666777777777777776653 4445555566666777777777777776654 3444444
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00028 Score=49.10 Aligned_cols=65 Identities=17% Similarity=0.047 Sum_probs=50.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
-++..+..+...+.+.|++++|+..|+++.+.+ +.+..+|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677778888888888888888888887765 45667778888888888888888888887764
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.23 E-value=0.0025 Score=43.28 Aligned_cols=67 Identities=10% Similarity=-0.042 Sum_probs=40.3
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 7 SPSTRLYNAVIDALVKSNS---IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
+.|+..+..+..++...++ .++|..++++..+.+ +.++.+...+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455556666665544433 566666666666655 445566666666666666666666666666655
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.0015 Score=59.02 Aligned_cols=62 Identities=3% Similarity=-0.140 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh-----cCC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 432 SYSALIKALIKSGRFDEAKQTFLSMEQ-----NGC-NP-DSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+++.+..+|...|++++|..++++.++ .|. .| ...+++.++..|..+|++++|..+++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345555555555555555555555442 110 11 122455555555555555555555555543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0056 Score=53.10 Aligned_cols=144 Identities=14% Similarity=0.031 Sum_probs=86.2
Q ss_pred CccHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cC--CHHH---HHHHHHHHHh
Q 048258 322 KPDKFTFNSMIDCLC--RAH---RFEDALDCLSEMVEWGVPPNTITYNILIRSLCA---IG--DVAR---SLRLFQKMQA 388 (504)
Q Consensus 322 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~~~---a~~~~~~~~~ 388 (504)
+.+...|..++.+.. ..+ +..+|+.+|++.++.. |-....|..+..+|.. .+ .... ....++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 456667777766543 333 3577888888888763 2233455544444431 11 1111 1111221111
Q ss_pred C-CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 389 D-RISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 389 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
. ..+.+..++..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 124556677777666666788888888888888764 66666667777778888888888888888774 566666
Q ss_pred HHH
Q 048258 468 SNL 470 (504)
Q Consensus 468 ~~~ 470 (504)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0041 Score=46.12 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCChhHHH
Q 048258 376 VARSLRLFQKMQADRISPDIYTFNALIQSFCRMN---KIEKAEKAFFSMLTLGLRP--DNFSYSALIKALIKSGRFDEAK 450 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 450 (504)
...+.+-|.+....+ +++..+.-.+..++++.+ +.+++..++++..+.. .| +...+-.+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445555666555544 356666666666677666 4557777777777653 23 2344455566667777777777
Q ss_pred HHHHHHHhcCCCCCh
Q 048258 451 QTFLSMEQNGCNPDS 465 (504)
Q Consensus 451 ~~~~~~~~~~~~~~~ 465 (504)
+.++.+++. .|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 777777763 5543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.0039 Score=42.98 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRF-TYNILIHGICRIGVVDEALRLVKQMEGLG 75 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (504)
....+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|++.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5567788899999999999888765 55667 88888888888999999999999888764
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.13 E-value=0.00064 Score=47.07 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 404 SFCRMNKIEKAEKAFFSMLTLGLRPDNF-SYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
.+...|++++|...++++++.. +.+.. .+..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555554431 11223 444445555555555555555555554
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.05 E-value=0.0056 Score=41.51 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=45.3
Q ss_pred CCCHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 392 SPDIYTFNALIQSFCRMNK---IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
+.+...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456666666666654443 577888888877753 223555666677777788888888888887765
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0019 Score=58.36 Aligned_cols=86 Identities=13% Similarity=0.007 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHhHHHHHH
Q 048258 338 AHRFEDALDCLSEMVEW---GVPPN----TITYNILIRSLCAIGDVARSLRLFQKMQAD-----R-ISPD-IYTFNALIQ 403 (504)
Q Consensus 338 ~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~ 403 (504)
.|++++|+.++++..+. -..|+ ..+++.+..+|...|++++|+.+++++.+. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665431 11111 235666666666666666666666665431 1 1222 235666666
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 048258 404 SFCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 404 ~~~~~g~~~~a~~~~~~~~~ 423 (504)
.|...|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 66666666666666666553
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.94 E-value=0.0034 Score=56.85 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=56.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----cHHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCCC-hhh
Q 048258 52 IHGICRIGVVDEALRLVKQMEGLG---YAP----NVYTYTILIDGFCNAKRVAEVFRVLEIMKER-----N-VCPN-EAT 117 (504)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~ 117 (504)
+..+..+|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++.... | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777777777765431 111 2346677777777777777777777766532 2 1122 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFME 143 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 143 (504)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66677777777777777777776654
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.93 E-value=0.054 Score=45.03 Aligned_cols=93 Identities=13% Similarity=-0.069 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcC-CCh
Q 048258 96 VAEVFRVLEIMKERNVCPN---EATVRSLVHGVFRC-----LDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNN-SMA 166 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 166 (504)
...|...+++..+.. |+ ...+..+...|... |+.++|.+.|++.+...|..+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 567777888888763 44 45788888888884 89999999999999988865677777788888874 889
Q ss_pred HHHHHHHHHHhhCCCC--CChhhHHH
Q 048258 167 SEAAAILRKMGDRGYL--PESSTFDY 190 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~--~~~~~~~~ 190 (504)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999998887655 55444433
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0043 Score=56.22 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSM 456 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~ 456 (504)
++.+...|...|++++|..+++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444444455555544444444
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.89 E-value=0.044 Score=54.80 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 336 CRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKM 386 (504)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 386 (504)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555543221 24445555555555555555555555554
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.69 E-value=0.023 Score=41.52 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=53.3
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-hHHHHHHH---H---HccCCHHHHHHHHHHHHh
Q 048258 357 PPNTITYNILIRSLCAIGDV------ARSLRLFQKMQADRISPDIY-TFNALIQS---F---CRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~---~---~~~g~~~~a~~~~~~~~~ 423 (504)
+.|..+|-..+....+.|++ ++..++|+++... ++|+.. .|...+.. | ...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556666666666666766 6666666666654 444421 22222221 1 133556666666666654
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 424 LGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
..-+- ...|......-.++|+...|++++.+.+..+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 31111 3344444444455666666666666666544
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.69 E-value=0.026 Score=46.87 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHc-----cCCHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHh-cCC
Q 048258 377 ARSLRLFQKMQADRISPD---IYTFNALIQSFCR-----MNKIEKAEKAFFSMLTLGLRP--DNFSYSALIKALIK-SGR 445 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g~ 445 (504)
..|...++++.+. .|+ ...|..+...|.. -|+.++|.+.|++.++. .| +..++..+...++. .|+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence 3444444444443 233 3344455555544 25555555555555553 23 23444444444444 255
Q ss_pred hhHHHHHHHHHHhc
Q 048258 446 FDEAKQTFLSMEQN 459 (504)
Q Consensus 446 ~~~a~~~~~~~~~~ 459 (504)
.+++.+.+++.+..
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 55555555555553
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.024 Score=42.06 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCChhhHH
Q 048258 26 IDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIG---VVDEALRLVKQMEGLGYAP--NVYTYTILIDGFCNAKRVAEVF 100 (504)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 100 (504)
...+.+.|+...+.+ +++..+...+..++++.+ +.++++.+++...+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555544 456666666666666666 4457777777766653 23 2344444555566777777777
Q ss_pred HHHHHHHHc
Q 048258 101 RVLEIMKER 109 (504)
Q Consensus 101 ~~~~~~~~~ 109 (504)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777665
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.25 Score=49.27 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=99.8
Q ss_pred HHHHHhcCCHHHHHH-HHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 17 IDALVKSNSIDLAYL-KFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
.......++++.|.+ ++..+. +......++..+.+.|.++.|+++.+. |... .......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~-----f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------QDQK-----FELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HHHH-----HHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------cchh-----eehhhhcCC
Confidence 455567899999877 542222 123337778888889999998876531 1111 233456799
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+...|+.+...++-+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 99998886443 3678899999999999999999999988643 33444555556766665555544
Q ss_pred HhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHH
Q 048258 176 MGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDT 210 (504)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (504)
....| -++....++.+.|++++|++++.+
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 44332 233344455556666666666543
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.56 E-value=0.027 Score=41.09 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=54.7
Q ss_pred CCChhhHHHHHHHHHhcCCH------HHHHHHHHHhhhCCCCCCHH-hHHHHHHH------HHhcCCHHHHHHHHHHHHh
Q 048258 7 SPSTRLYNAVIDALVKSNSI------DLAYLKFQQMSVDQCKPDRF-TYNILIHG------ICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~a~~~~~~~~~ 73 (504)
+.|..+|-..+...-+.|++ +..+.+|+++...- +|+.. .|..-+.. +...++.++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566777777777777777 77777777766532 44321 11111111 1223566666666666644
Q ss_pred CCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 048258 74 LGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNV 111 (504)
Q Consensus 74 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 111 (504)
.+ +-=...|....+.-.+.|+...|.+++......+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 32 22244555555555556666666666666655543
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.18 Score=38.43 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKR 95 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (504)
-+....+.|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 346677889999999887765 2678899999999999999999999888763 4444455666788
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHH
Q 048258 96 VAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRK 175 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 175 (504)
.+...++-+....+|- ++.....+...|+++++.++|.+.-. +...+......|..+.|.++...
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777766666555531 34445556677888888888755321 11111122235666677777666
Q ss_pred H
Q 048258 176 M 176 (504)
Q Consensus 176 ~ 176 (504)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.026 Score=39.25 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=36.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 9 STRLYNAVIDALVKSNSIDLAYLKFQQMSVDQ------CKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL 74 (504)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (504)
++.-+..+...+.+.|++..|...|+.+.+.. -.+....+..+..++.+.|+++.|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666655421 0223445555555566666666666666655543
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.03 Score=38.87 Aligned_cols=63 Identities=8% Similarity=-0.157 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLG------YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (504)
.-+-.+...+.+.|++..|...|+...+.- -.+...++..+..++.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555544320 012333444444444444444444444444444
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.2 Score=38.20 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=83.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH
Q 048258 334 CLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK 413 (504)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 413 (504)
...+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888877665 2566788888888888888888888877653 3445555666777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..++-+.....| -++....++...|+++++.+++.+.-. .|. -.-.....|-.+.|.++.+.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 776666665544 245556667778888888887754432 111 111122346677777776655
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.09 E-value=0.027 Score=40.04 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CcccHHHHHHHHHhcCChhHH
Q 048258 375 DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEK---AEKAFFSMLTLGLRP--DNFSYSALIKALIKSGRFDEA 449 (504)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 449 (504)
....+.+-+.+....+ .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444444444444333 2444444445555555554444 555555555542 12 122333444555666666666
Q ss_pred HHHHHHHHh
Q 048258 450 KQTFLSMEQ 458 (504)
Q Consensus 450 ~~~~~~~~~ 458 (504)
++.++.+++
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
No 233
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.01 E-value=1.4 Score=43.71 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (504)
|..++++..+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555666666666666666665
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.90 E-value=0.29 Score=35.01 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048258 430 NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKERGI 496 (504)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 496 (504)
....+..++.+...|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.++++++=++|.
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555555554332 245555555555555555555555555555555443
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.71 E-value=0.0038 Score=55.57 Aligned_cols=218 Identities=11% Similarity=0.008 Sum_probs=138.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHH
Q 048258 8 PSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILI 87 (504)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
-|+..|..++.+..+.|.+++-+..+....+. ..++..=+.|+-+|++.++..+-.++ .. .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef----l~---~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHH
Confidence 46667889999999999999999988777765 33445557889999999887654332 21 35555555666
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC--------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 048258 88 DGFCNAKRVAEVFRVLEIMKERN--------------------VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPL 147 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (504)
+-|...|.++.|.-+|..+.... -.-++.+|..+..+|...+++.-|.-.--.++-....
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade 231 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 231 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH
Confidence 66666666666666555432110 0236678888888999988888776554444432211
Q ss_pred cchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhc-CCCc------cH
Q 048258 148 TQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKR-GVKP------RF 220 (504)
Q Consensus 148 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~ 220 (504)
...++..|-..|.+++-+.+++.-... -+.....|+.+.-.|++- +.++..+-++....+ +++. ..
T Consensus 232 -----L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 232 -----LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp -----CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred -----HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123556677888899888888887643 234666788887777765 344444444332222 2221 23
Q ss_pred HHHHHHHHHHHhcCCcHHHHH
Q 048258 221 STYLLLMEALYKAGRDVEGDR 241 (504)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~ 241 (504)
..|..++..|..-.+++.|..
T Consensus 305 hLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHhcchhHHHHHH
Confidence 446666666776666666543
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.14 E-value=0.23 Score=35.35 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCChhhH
Q 048258 25 SIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDE---ALRLVKQMEGLGYAP--NVYTYTILIDGFCNAKRVAEV 99 (504)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 99 (504)
....+...|+.....+ .++..+--.+..++.+..+... ++.+++.+...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3334444444443333 3444444444445554444433 555555554432 12 122222233334455555555
Q ss_pred HHHHHHHHHc
Q 048258 100 FRVLEIMKER 109 (504)
Q Consensus 100 ~~~~~~~~~~ 109 (504)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.04 E-value=0.63 Score=33.35 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCC
Q 048258 186 STFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDR 250 (504)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (504)
..+...+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444444444444444443321 24444444455555555555555555554444444
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.67 E-value=0.85 Score=33.12 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=40.4
Q ss_pred CCCHHhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh
Q 048258 392 SPDIYTFNALIQSFCRMNK---IEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDS 465 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 465 (504)
.|+..+--.+..++.++.+ ..++..+++.+.+.+..-.....-.+.-++.+.|++++|++..+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555554455555555554 345666666666542111233344455567777777777777777776 35544
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.53 E-value=0.44 Score=34.09 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 413 KAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 413 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
+++.+++++.+.+..-....+-.+.-++.+.|++++|++..+.+++
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3445555544432101122333444445555555555555555554
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.18 E-value=5 Score=39.94 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (504)
|..+++...+.++.+.+.++|+.+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455566666777777777776653
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.44 E-value=0.73 Score=34.52 Aligned_cols=120 Identities=7% Similarity=-0.102 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcHH
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQMSVDQ-CKPDR-------FTYNILIHGICRIGVVDEALRLVKQMEGLG--YAPNVY 81 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~ 81 (504)
.+-.-++.+...|.++.|+-+.+.+.... .+|+. .++..+..++...|++.+|...|++..+.. +..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45556778888899999988887765431 12331 245667788888999999999999864321 111111
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 82 TYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+...+. ....... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111110 0000000 0112234455556778888888888888888876544
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.20 E-value=0.34 Score=43.16 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhHH
Q 048258 46 FTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKE-----RNVCPNEATVR 119 (504)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 119 (504)
.+...++..+...|++.+|+..++.+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345667788888999999998888887764 56788999999999999999999999988754 48888887644
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.09 E-value=1.6 Score=42.43 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=37.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048258 438 KALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTS 491 (504)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 491 (504)
..|...|+++-|.++.++.+.. .+.+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455677777777777777764 2335667777777777777777777777766
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.03 E-value=1.3 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLIL 472 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 472 (504)
+.=+..+-++.+....+.|++.+..+.+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44455666666666666677777777777777777777777777666644 223344455444
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.89 E-value=5.3 Score=36.25 Aligned_cols=190 Identities=12% Similarity=0.055 Sum_probs=98.4
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHH----hc
Q 048258 268 VNMMDRATEICREMRDR-----DIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLC----RA 338 (504)
Q Consensus 268 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 338 (504)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..... ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888777665532 233345567778888888888888877776665432221 222233333222 22
Q ss_pred CCHHHHH--HHHHHHHH--CC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHhHHHHHHHH
Q 048258 339 HRFEDAL--DCLSEMVE--WG-VPP---NTITYNILIRSLCAIGDVARSLRLFQKMQAD--RISPD---IYTFNALIQSF 405 (504)
Q Consensus 339 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 405 (504)
...+... .+.+.... .| +.. .......|...+...|++.+|..++..+... +.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222111 11111110 00 111 1112345666677777777777777776542 21111 23455556667
Q ss_pred HccCCHHHHHHHHHHHHh----CCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048258 406 CRMNKIEKAEKAFFSMLT----LGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQ 458 (504)
Q Consensus 406 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 458 (504)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777766532 111111 12344555556666777777666666554
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.55 E-value=2.4 Score=41.10 Aligned_cols=126 Identities=13% Similarity=-0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcHHh--HHHHHHHHHhcC-ChhhHHHHHHHHHHc------CCCC-Ch--
Q 048258 49 NILIHGICRIGV-VDEALRLVKQMEGLGYAPNVYT--YTILIDGFCNAK-RVAEVFRVLEIMKER------NVCP-NE-- 115 (504)
Q Consensus 49 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g-~~~~a~~~~~~~~~~------~~~~-~~-- 115 (504)
..++..+...++ ++.|+.+|+++.+.. |...+ ...++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444555566 588999999998873 43332 223333333332 223445544444321 1111 11
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHh
Q 048258 116 --------ATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMG 177 (504)
Q Consensus 116 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 177 (504)
..+..-...+...|+++.|+++-++.....|. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12233345567789999999999998887665 67889999999999999999998888874
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.31 E-value=1.1 Score=39.91 Aligned_cols=127 Identities=11% Similarity=-0.074 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHH---HhcCCHHHHHHHHHHhhhC--CCC-CCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCcH
Q 048258 8 PSTRLYNAVIDAL---VKSNSIDLAYLKFQQMSVD--QCK-PDRFTYNILIHGICRIGVVD-EALRLVKQMEGLGYAPNV 80 (504)
Q Consensus 8 ~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~ 80 (504)
.|...|..++... ...|+.+.|...++.+... |.. ++.. ...|- ....-+++.. .
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~-------~ 171 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK-------V 171 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH-------H
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH-------H
Confidence 3444455554433 2357888888888887764 211 1110 01121 1122222222 1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCcchhHH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFME-----REPLTQKLVC 153 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 153 (504)
.+...++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|++.|+++.. .|..|...+-
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 234556778889999999999999998774 45778999999999999999999999988765 3666655543
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.07 E-value=1.8 Score=29.03 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 305 EVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
+.-+..+-++.+......|++....+.+++|.+.+++.-|.++|+-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344555555555555566666666666666666666666666665554
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.46 E-value=2.6 Score=30.11 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLIL 472 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 472 (504)
|.=+..+-++.+....+.|++.+....+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455566666666667777777777777777777777777777777654 233444565554
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.33 E-value=8.2 Score=35.02 Aligned_cols=153 Identities=10% Similarity=0.040 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHhhhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHH----hc
Q 048258 23 SNSIDLAYLKFQQMSVD-----QCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFC----NA 93 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 93 (504)
.|+++.|++.+-.+.+. +...+......++..|...|+++...+.+..+.+..-.. ...-..+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 47788888777555432 234456777888889999999998888777766543222 222233333322 22
Q ss_pred CChhh--HHHHHHHHHHc--C-CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCc---chhHHHHHHHHH
Q 048258 94 KRVAE--VFRVLEIMKER--N-VCP---NEATVRSLVHGVFRCLDPHKAFELLIRFMERE--PLT---QKLVCNTLLYRL 160 (504)
Q Consensus 94 g~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~ 160 (504)
...+. -..+.+..... | +.. .......|...+...|++.+|..++..+...- ... -...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 11111111110 1 001 11123456666777777777777777665321 110 122344445555
Q ss_pred hcCCChHHHHHHHHHH
Q 048258 161 SNNSMASEAAAILRKM 176 (504)
Q Consensus 161 ~~~~~~~~a~~~~~~~ 176 (504)
...+++..|..++.++
T Consensus 188 l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5566666666555554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.96 E-value=11 Score=39.29 Aligned_cols=149 Identities=9% Similarity=0.024 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGL----G------------- 75 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~------------- 75 (504)
...++..+...+.++.+.++..... .++..--.+..++...|++++|.+.|++.... +
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 4457778888899988887655443 34444445677889999999999999875210 0
Q ss_pred -----CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 76 -----YAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNE----ATVRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 76 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
...-..-|..++..+.+.+.++.+.+.-....+.....+. ..|..+++.+...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 0112356888999999999999999888877765322222 257788999999999999999988776543
Q ss_pred CcchhHHHHHHHHHhcCCChHH
Q 048258 147 LTQKLVCNTLLYRLSNNSMASE 168 (504)
Q Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~ 168 (504)
........++..++..|..+.
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhh
Confidence 345566777777777666544
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.72 E-value=7.1 Score=33.18 Aligned_cols=111 Identities=11% Similarity=0.019 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHH----HHHHhhCCCCCChhhHHHHHH
Q 048258 118 VRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAI----LRKMGDRGYLPESSTFDYTVT 193 (504)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 193 (504)
+.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++ .+-..+.+..++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444445566666666665543221 13334444433332 333334455555555555555
Q ss_pred HHHccCChh-hHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCCcHHHHHHH
Q 048258 194 CLVTGLDLN-ETCGILDTFI----KRG--VKPRFSTYLLLMEALYKAGRDVEGDRYL 243 (504)
Q Consensus 194 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (504)
.+.....-+ .-.++++.++ +.| ...++.....+...+.+.+++.+|...|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 544422111 1122222222 121 1235666777777777777777766654
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.63 E-value=3.5 Score=29.53 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=31.8
Q ss_pred CccHHHHHHHHHHHHhcCCc---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 217 KPRFSTYLLLMEALYKAGRD---VEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDR 284 (504)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 284 (504)
.|+..+-..++.++.++... ..++.+++.+.+.++......+..+.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444444444444444432 234444444444433223334444444555555555555555555544
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.59 E-value=11 Score=39.36 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHH--------------------
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMK-------------------- 107 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------------------- 107 (504)
...++..+...+.++-+.++...... ++..--.+..++...|++++|...|++..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 34567778888999988887665543 44444556788889999999999996541
Q ss_pred HcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcc----hhHHHHHHHHHhcCCChHHHHHHHHHHhhCCC
Q 048258 108 ERN--VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQ----KLVCNTLLYRLSNNSMASEAAAILRKMGDRGY 181 (504)
Q Consensus 108 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 181 (504)
... ...-..-|..++..+.+.+.++.+.+.-...++.....+ ...|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 111 112234577788899999999999988887766543222 23678888999999999999999988876543
Q ss_pred CCChhhHHHHHHHHHccCChhhHHH
Q 048258 182 LPESSTFDYTVTCLVTGLDLNETCG 206 (504)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (504)
-...+..++..++..+..+.-..
T Consensus 970 --r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChhhhhC
Confidence 45677788888887777665443
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.58 E-value=7.3 Score=33.10 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHH----HHHHHhcCCCccHHHHHHHHH
Q 048258 153 CNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGI----LDTFIKRGVKPRFSTYLLLME 228 (504)
Q Consensus 153 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 228 (504)
+.++..-|.+.+++++|.+++..-- ..+.+.|+...+.++ ++-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445566888899999998876532 224445565554443 444445577777777777776
Q ss_pred HHHhcCCcH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048258 229 ALYKAGRDV-EGDRYLNHVF----KDR--LVSNVNSYNMVIDCFCKVNMMDRATEICR 279 (504)
Q Consensus 229 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 279 (504)
.+......+ .-..+.+.++ +.+ ..-++.....+...|.+.+++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 665533211 1222333332 121 23467777788888888888888777664
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.01 E-value=1.4 Score=33.06 Aligned_cols=118 Identities=11% Similarity=0.000 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCccc
Q 048258 363 YNILIRSLCAIGDVARSLRLFQKMQAD-RISPDI-------YTFNALIQSFCRMNKIEKAEKAFFSMLTLG--LRPDNFS 432 (504)
Q Consensus 363 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 432 (504)
+-.-+..+...|.++.|+-+...+... +..|+. .++..+.+++...|++..|...|+++++.. +..+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 333445556666777766666554332 112221 144555666667777777777777665321 1111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
...+. ....... .....++...-..+..+|.+.|++++|..+++.+..
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 0000000 001223345555678888888888888888876543
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.82 E-value=4.1 Score=29.11 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048258 306 VHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIR 368 (504)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (504)
.-+..+-++.+...++.|++......+++|.+.+|+.-|.++|+-+..+ ..+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555566666666677777777777777777777777777766654 2233444555543
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.22 E-value=2.3 Score=34.90 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHH----hHHHHHHHHHh
Q 048258 17 IDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVY----TYTILIDGFCN 92 (504)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 92 (504)
+..+.+.|+++.|+.....-++.. |.|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|++-
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH--
Confidence 356778899999999988888776 668888888899999999999999988888776 34432 334444321
Q ss_pred cCChhhHHHHHHHHHHcCCCC-----ChhhHHHHHHHH--HhcCChHHHHHHHHHHHhcCC
Q 048258 93 AKRVAEVFRVLEIMKERNVCP-----NEATVRSLVHGV--FRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~ 146 (504)
..=.....-+-.| ...-...++.+. ...|+.++|.++-.++.+..+
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 1112222211111 112223333333 345888888888777766533
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.43 E-value=11 Score=32.26 Aligned_cols=84 Identities=7% Similarity=0.004 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHHHCCCCccHHHHHH
Q 048258 251 LVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLLECGFKPDKFTFNS 330 (504)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (504)
..-++.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+...+ ++...-..
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa 193 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA 193 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH
Confidence 34477777888888888888888887762 1 223233555444444433332111 12222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048258 331 MIDCLCRAHRFEDALDCLSEMVE 353 (504)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~ 353 (504)
++ .|.-.++...|..+++...+
T Consensus 194 VL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-HHHHhCCHHHHHHHHHHHHH
Confidence 33 35566778888777665543
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.18 E-value=12 Score=32.15 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHH----HHHhhCCCCCChhhHHHHH
Q 048258 117 TVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAIL----RKMGDRGYLPESSTFDYTV 192 (504)
Q Consensus 117 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 192 (504)
++.++..-|.+.+++++|.+++..-.. .+.+.|+...+-++- +-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555567777888888776654221 233444444433332 3334445566666666666
Q ss_pred HHHHccCChh-hHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048258 193 TCLVTGLDLN-ETCGILDTFI----KRG--VKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCF 265 (504)
Q Consensus 193 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (504)
..+.....-+ .-..+++.++ +.| ..-|+.....+...|.+.+++.+|...|- . +..++...+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6655544321 1122222222 222 34467788888899999999888887762 2 2222334554444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCchHHHHHHHHHHH
Q 048258 266 CKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEVHKTRELLVMLL 317 (504)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (504)
...+... .++...-..++ -|...++...|..+++...
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 3333211 11222333333 3455677777877666554
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.07 E-value=8.1 Score=34.89 Aligned_cols=98 Identities=10% Similarity=-0.106 Sum_probs=67.1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCcchh--HH
Q 048258 81 YTYTILIDGFCNAKRVAEVFRVLEIMKERN--VCPNEATVRSLVHGVFRCLDPHKAFELLIRFMER---EPLTQKL--VC 153 (504)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~--~~ 153 (504)
.+...+...|.+.|++++|.+.|.++.... ...-...+..+++.+...+++..+...+.++... ++.+... ..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366778888889999999999999887653 2333456777888888899999988888876543 2222221 11
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 154 NTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 154 ~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
..-...+...+++..|...|.+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122335567888888888877654
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.00 E-value=24 Score=33.55 Aligned_cols=138 Identities=7% Similarity=0.033 Sum_probs=71.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhh
Q 048258 19 ALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAE 98 (504)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (504)
...+.|++..+..+...+...-+.| -..|..+...+ ......+....+++-... +.....-..-+..+.+.+++..
T Consensus 15 ~a~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 15 QAWDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCHHH
Confidence 3455688887777766654321111 11233332222 223455555555443321 2222233444555666667666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCCh
Q 048258 99 VFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMA 166 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (504)
.+..+.. .+.+...-.....+....|+..+|......+-..+.. ....+..++..+.+.|..
T Consensus 91 ~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 91 LLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 5554332 2335555556667777788877777777776655443 445555566655554443
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.54 E-value=8.2 Score=34.85 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=81.2
Q ss_pred ChhhHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCcchhHHHHHHHHHhcCCChHHHH
Q 048258 95 RVAEVFRVLEIMKERN-VCP-NEATVRSLVHGVFRCLDPHKAFELLIRFMER--EPLTQKLVCNTLLYRLSNNSMASEAA 170 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 170 (504)
..++..+......+.. ... -..+...+...|.+.|+.+.|.+.|.++... +.......+-..+..+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444445555554432 222 2346778999999999999999999998875 33445567888899999999999999
Q ss_pred HHHHHHhh---CCCCCChhh--HHHHHHHHHccCChhhHHHHHHHHHhc
Q 048258 171 AILRKMGD---RGYLPESST--FDYTVTCLVTGLDLNETCGILDTFIKR 214 (504)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (504)
..+.++.. .+..|+... .......+...+++..|...|-+....
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 99988743 333333321 112223345678999998888777654
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.48 E-value=7.7 Score=30.22 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=53.3
Q ss_pred CCCCHHhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 048258 391 ISPDIYTFNALIQSFCR--MNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 464 (504)
...|.......+...-. .+...++.++|..|...|+.-. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 34465544444432222 4557899999999998876554 44567788888889999999999999998877773
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.81 E-value=10 Score=27.53 Aligned_cols=66 Identities=9% Similarity=0.028 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 048258 113 PNEATVRSLVHGVFRCLDP---HKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGD 178 (504)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 178 (504)
|+..+-..+..++++..+. .+++.+++.+...++........-+.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444444444432 23444445444444433333333344445555555555555555444
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.42 E-value=9.8 Score=29.66 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=47.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 048258 373 IGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD 429 (504)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 429 (504)
.+....+.++|..|...++--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4557799999999988876544 45788888889999999999999999998876663
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.53 E-value=9.4 Score=28.20 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=39.8
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 048258 392 SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNP 463 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 463 (504)
..|.......+...-.. +++.++|..|...|+--. ...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555555544433222 236666777776655443 3345566666666777777777777777665555
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.75 E-value=11 Score=31.02 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 53 HGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
....+.|+.++|+.....-.+.. +-|...-..+++.+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888777777664 557777778888888888888888888887776
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.30 E-value=13 Score=24.96 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 048258 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 419 (504)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+... .||...|.+|.. .+.|-.+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555444322 11122222334455566666655443332 455555544432 35555555555555
Q ss_pred HHHhCC
Q 048258 420 SMLTLG 425 (504)
Q Consensus 420 ~~~~~~ 425 (504)
++-.+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555444
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.55 E-value=14 Score=24.87 Aligned_cols=78 Identities=22% Similarity=0.139 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 048258 340 RFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFF 419 (504)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 419 (504)
..++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+... .||...|.+|.. .+.|-.+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34455555444444322 11122222334455555555555544432 455555544432 24455555555554
Q ss_pred HHHhCC
Q 048258 420 SMLTLG 425 (504)
Q Consensus 420 ~~~~~~ 425 (504)
++-.+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 444443
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.20 E-value=20 Score=26.53 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 048258 379 SLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428 (504)
Q Consensus 379 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 428 (504)
+.++|..|...++--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555443322 2244445555555555555555555555544333
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.37 E-value=18 Score=24.27 Aligned_cols=50 Identities=18% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 54 GICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.+...|+|++|..+.+... .||...|.+|.. .+.|-.+++..-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3445555555555444333 455555554432 3445555555544444443
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.31 E-value=49 Score=29.28 Aligned_cols=166 Identities=13% Similarity=-0.023 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhH-
Q 048258 220 FSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLV----SNVNSYNMVIDCFCKV-NMMDRATEICREMRDRDIAPNLVTF- 293 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 293 (504)
......++..|.+.|+.++..+++......-.. ........++..+... +..+.-.++..+..+..-. ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456667777777888877777776655432111 1233445555555543 2333334444333322100 11222
Q ss_pred -----HHHHHHHhcCCchHHHHHHHHHHHHCCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChh
Q 048258 294 -----NTLISGHCKDAEVHKTRELLVMLLECGFKPD-----KFTFNSMIDCLCRAHRFEDALDCLSEMVEW--GVPPNTI 361 (504)
Q Consensus 294 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 361 (504)
..++..|...|++.+|.+++..+.+.=...| ..++..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1455666667777777666666553210111 123344455566666666666666655432 1222222
Q ss_pred hHH----HHHHHHH-hcCCHHHHHHHHHHH
Q 048258 362 TYN----ILIRSLC-AIGDVARSLRLFQKM 386 (504)
Q Consensus 362 ~~~----~l~~~~~-~~g~~~~a~~~~~~~ 386 (504)
.-. .-...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 211 1122234 556666666655554
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=72.49 E-value=19 Score=24.19 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=23.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 048258 54 GICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKER 109 (504)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (504)
.+...|+|++|..+.+... .||...|.+|.. .+.|-.+++..-+.++...
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3445555555555544433 455555554432 2444444444444444433
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.27 E-value=14 Score=27.78 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=50.5
Q ss_pred CCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 048258 392 SPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYT 467 (504)
Q Consensus 392 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 467 (504)
..|.......+..--.. +.+.++|..|...|+--. ...|......+-..|++.+|.++|+..++.+-.|-...
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 44655555555332233 346778888888876554 34567777778889999999999999998877775543
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=71.85 E-value=70 Score=30.44 Aligned_cols=49 Identities=12% Similarity=-0.151 Sum_probs=26.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048258 333 DCLCRAHRFEDALDCLSEMVEWGVPPNTITYNILIRSLCAIGDVARSLRLFQ 384 (504)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 384 (504)
..+...|....|...+..+.+. . +......+.......|..+.++....
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 3455667777777777766653 1 22223334444445666666554443
No 277
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=71.42 E-value=54 Score=29.54 Aligned_cols=110 Identities=11% Similarity=0.026 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 048258 23 SNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRV 102 (504)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 102 (504)
..+.+-|.++.. +.|++--...|..-...+...|++++|.++.-..++ |+-.+..|.+.+-.+=..-|+..-.+..
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 366776666544 455566667788888888999999999988877664 4556777777666555556777778888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 048258 103 LEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFEL 137 (504)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 137 (504)
|..+.+.| ..+..--..+++.-...|+.+-....
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 88888776 34544444455555555555444333
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=70.06 E-value=21 Score=28.40 Aligned_cols=71 Identities=11% Similarity=0.205 Sum_probs=51.6
Q ss_pred CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 048258 391 ISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD-NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464 (504)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 464 (504)
...|.......+. |+... +++.++|..|...|+.-. ...|......+-..|++.+|..+|+.-++.+-.|-
T Consensus 113 YknD~RyLklWl~-Ya~~~--~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 113 YKDDVRYLRIWMQ-YVNYI--DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp GTTCHHHHHHHHH-HHTTC--SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred ccCCHHHHHHHHH-HHHcc--CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3456666666555 44432 577788999998876554 34567777888889999999999999998876773
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.88 E-value=56 Score=26.38 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCC----cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 048258 51 LIHGICRIGVVDEALRLVKQMEGL--GYAP----NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHG 124 (504)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (504)
-+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356677778888888887776532 1111 0111122222222222222223333333 22 3345556666677
Q ss_pred HHhcCChHHHHHHHHHHH
Q 048258 125 VFRCLDPHKAFELLIRFM 142 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~ 142 (504)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777765543
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=62.88 E-value=53 Score=26.50 Aligned_cols=90 Identities=7% Similarity=-0.006 Sum_probs=56.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC--CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHH
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVD--QCKP----DRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDG 89 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
-++.+....++++|+.+.++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467889999999999999877543 1121 112222333333333344445555555543 3456666667788
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 048258 90 FCNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~ 108 (504)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8899999999998877654
No 281
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=61.99 E-value=42 Score=24.83 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV--VDEALRLVKQMEGLGYA 77 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 77 (504)
...++.-|...|+.++|...++.+.... -....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567778888888888888887775211 1122233333334433222 34555666666655533
No 282
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=59.26 E-value=48 Score=26.04 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=10.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 048258 54 GICRIGVVDEALRLVKQMEG 73 (504)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~ 73 (504)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 44555555555555555544
No 283
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=58.39 E-value=52 Score=29.64 Aligned_cols=99 Identities=13% Similarity=0.007 Sum_probs=67.3
Q ss_pred CCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHh
Q 048258 3 FLGISPSTRLYNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYT 82 (504)
Q Consensus 3 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
+.|++=--..|..-...+...|++++|..+-...++ |+-.++.+.+.+-.+=..-|+..-.+.+|..+.+.| +.+..-
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~E 431 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYE 431 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHH
Confidence 345555566677778999999999999999887764 345677777766555555577777888888888776 455544
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 048258 83 YTILIDGFCNAKRVAEVFRVL 103 (504)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~ 103 (504)
-.-+++.....|+.+-..+.+
T Consensus 432 SlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 432 SLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHhHHHHhccHHHHHHHHH
Confidence 444555555666655444443
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.35 E-value=56 Score=24.51 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 048258 357 PPNTITYNILIRSLCAIGDVARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPD 429 (504)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 429 (504)
..|+.-...-+..--..+ .+..+|..|...++--. ...|......+...|++.+|.++|+.-++.+-.|.
T Consensus 60 knD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 345554444333222233 36778888888776544 44777788888889999999999999998776664
No 285
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=57.96 E-value=92 Score=26.87 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCC
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRI-GVVDEALRLVKQMEGLGY 76 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 76 (504)
...++.-|...|+.++|...++.+..... ....+...+..++-+. ...+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 45678889999999999998888863211 1112222222222211 123455566666665554
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.26 E-value=54 Score=23.37 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGV--VDEALRLVKQMEGLGYA 77 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 77 (504)
...++.-|...|+.++|...++.+.... -....+...+..++-+.+. .+....++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567777888888888888887775211 1122233333334433321 34556666666655533
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.97 E-value=79 Score=25.86 Aligned_cols=243 Identities=12% Similarity=0.033 Sum_probs=107.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHH
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVN---SYNMVIDCFCKVNMMDRATEICREMRDRDIAPNL---VTFNTLISGH 300 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 300 (504)
+...++.|+.+.... +++.+..++.. .-...+...+..|+.+-+..+ .+.|..++. ...+.+ ...
T Consensus 9 L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L-~~A 79 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPF-LLA 79 (285)
T ss_dssp HHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHH-HHH
T ss_pred HHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHH-HHH
Confidence 344456677654444 44444333211 111234445566776544444 444543332 222222 223
Q ss_pred hcCCchHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------------hHH
Q 048258 301 CKDAEVHKTRELLVMLLECGFKPDK---FTFNSMIDCLCRAHRFEDALDCLSEMVEWGVPPNTI-------------TYN 364 (504)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~ 364 (504)
+..|+.+ +++.+.+.|..++. ...+. +...+..|+.+- ++.+.+.|..++.. ..+
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 3445543 44444555544332 12222 233445566543 44444444443322 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHH
Q 048258 365 ILIRSLCAIGDVARSLRLFQKMQADRISPD---IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFS--YSALIKA 439 (504)
Q Consensus 365 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 439 (504)
.+...+..|+.+-...+++.. +..++ ..-.+.+. ..+..++.....++.+.+.+.|..++... -.+.+..
T Consensus 151 -~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 151 -ALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp -HHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 333444566665555444331 32222 22223333 33445555555666667777776665332 1223344
Q ss_pred HHhcCChhHHHHHHHHHHh-cCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048258 440 LIKSGRFDEAKQTFLSMEQ-NGCNPDSYT--SNLILETLVQQGRFEEAHDIVKTSKERGISFKS 500 (504)
Q Consensus 440 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 500 (504)
.+..|+.+- ++.+.+ .|..++... -...+....+.|.. ++++.+.+.|..++.
T Consensus 226 A~~~~~~~~----v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~----~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 226 AVEKKHLGL----VQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDC 281 (285)
T ss_dssp HHHTTCHHH----HHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCC
T ss_pred HHHcCCHHH----HHHHHhccCCCccccCCCCCcHHHHHHHcCcH----HHHHHHHHcCCCCCc
Confidence 455666544 334444 454443221 11223333445554 355556667766654
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.15 E-value=72 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 048258 377 ARSLRLFQKMQADRISPD-IYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRP 428 (504)
Q Consensus 377 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 428 (504)
+.+..+|..|...++--. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467788888888776544 4477788888888999999999999988876565
No 289
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.82 E-value=79 Score=24.87 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHcCCCCChh--hHH-----HHHHHHHhcCChHHHHHHHHHHHhc
Q 048258 96 VAEVFRVLEIMKERNVCPNEA--TVR-----SLVHGVFRCLDPHKAFELLIRFMER 144 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~--~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+.|+.+++.+.+.-..++.. ... ..+..|.+.|.+++|.++++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777776552111111 111 2233455566666666666665554
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.89 E-value=2.3e+02 Score=28.79 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048258 16 VIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
++..|...|.++-|.++..... .++..--.+..+|...|++++|.+.|++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5566666677666655433332 233332345666777777777777777653
No 291
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.30 E-value=82 Score=22.96 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=24.4
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 048258 71 MEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC 128 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (504)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 65 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEEL 65 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC
Confidence 34444444332 222333333334 445556666655554444444433333333333
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.04 E-value=60 Score=23.14 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCC
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK--RVAEVFRVLEIMKERNVC 112 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~ 112 (504)
...++.-|...|+.++|.+.++++..-.+ ....+...+..++-+.+ ..+.+.+++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46688889999999999999999863111 12233444555555443 245677778887776654
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.66 E-value=88 Score=22.75 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=25.9
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 71 MEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34444443332 22333444444445555666666655544344444444444444333
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=44.09 E-value=1.7e+02 Score=25.88 Aligned_cols=93 Identities=9% Similarity=-0.023 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHhcCCchHHHHHHHHHHHHC--CCCccHHHHHHH-
Q 048258 260 MVIDCFCKVNMMDRATEICREMRDRDIAPN-----LVTFNTLISGHCKDAEVHKTRELLVMLLEC--GFKPDKFTFNSM- 331 (504)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l- 331 (504)
.++..|...|++.+|.+++..+.+.-...| ...+..-+..|...+++.++...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456667777777777777776655311111 123444455667777777777777665432 111233222211
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 048258 332 ---IDCLC-RAHRFEDALDCLSEMV 352 (504)
Q Consensus 332 ---~~~~~-~~~~~~~a~~~~~~~~ 352 (504)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11244 5677777777666554
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=43.52 E-value=92 Score=22.65 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 420 SMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 345566655533 23344555555566677777777776654555556555555565554
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=42.57 E-value=27 Score=26.92 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=10.5
Q ss_pred HHHHhcCChhhHHHHHHHHH
Q 048258 88 DGFCNAKRVAEVFRVLEIMK 107 (504)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~ 107 (504)
..|.+.|.+++|.++|++.-
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 34555555555555555543
No 297
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.54 E-value=98 Score=22.69 Aligned_cols=58 Identities=7% Similarity=-0.011 Sum_probs=28.5
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 71 MEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44455544432 233344444444 45566666666666554444444444444444444
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.49 E-value=77 Score=23.10 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=28.0
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 421 MLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
+.+.|++++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34455554432 123334444444 5566666666665544445555444455554444
No 299
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.41 E-value=92 Score=22.32 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 71 MEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445444332 223344444444 45556666666655544444444444444444333
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.53 E-value=95 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHhC
Q 048258 410 KIEKAEKAFFSMLTL 424 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~ 424 (504)
..-.|.++++.+.+.
T Consensus 33 ~~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 33 RHMSAEDVYKALMEA 47 (136)
T ss_dssp CSBCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhh
Confidence 344455555555444
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.53 E-value=2.2e+02 Score=26.35 Aligned_cols=66 Identities=9% Similarity=0.039 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChh--h-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048258 324 DKFTFNSMIDCLCRAHRFEDALDCLSEMVEWGV-PPNTI--T-YNILIRSLCAIGDVARSLRLFQKMQAD 389 (504)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 389 (504)
....+|.+++.|...+.+++|..+..+..--.. .++.. . +..+...+.-.+++.+|.+.+..+...
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345677777777777778888777776641100 01111 1 123445556677777777777776654
No 302
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.94 E-value=1.2e+02 Score=23.23 Aligned_cols=172 Identities=10% Similarity=-0.026 Sum_probs=82.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
.++...-...+.++.+.+..+....+. ++.. .++...-...+.++...|..+ +...+..+.. .++..+-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 345555555555555555533333333 3332 234444445555555555533 3333333333 2466666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL 201 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (504)
+.++...++.+. ...+..+.. .++..+-...+.++.+.+.. ++...+..+.. .++...-...+.++...++
T Consensus 97 ~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~- 167 (201)
T 3ltj_A 97 AVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG- 167 (201)
T ss_dssp HHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 666666666433 333333332 22334444445555555543 33444444443 2455555556666666654
Q ss_pred hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 048258 202 NETCGILDTFIKRGVKPRFSTYLLLMEALYKA 233 (504)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (504)
.++...+..+.+. ++..+-.....++.+.
T Consensus 168 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 168 ERVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 4455555555543 3444444455555443
No 303
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=40.78 E-value=49 Score=20.09 Aligned_cols=45 Identities=9% Similarity=0.007 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHHHHHhc
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIHGICRI 58 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 58 (504)
++-++..+++..-.++++..+.++.+.| ..+...|..-++.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4445555555555666666666666655 45555555555555543
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.12 E-value=78 Score=23.36 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCC
Q 048258 48 YNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAK--RVAEVFRVLEIMKERNVC 112 (504)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~ 112 (504)
...++.-|...|+.++|...++++..-. -....+...+..++-+.+ ..+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4668888999999999999999986311 112333444455554432 245567777777766643
No 305
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.64 E-value=55 Score=24.48 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhcC
Q 048258 220 FSTYLLLMEALYKAG 234 (504)
Q Consensus 220 ~~~~~~l~~~~~~~~ 234 (504)
..|....+..+...|
T Consensus 69 ~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 69 IATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 333333333333333
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.15 E-value=1e+02 Score=22.56 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=26.6
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 421 MLTLGLRPDNFSYSALIKALIKSG-RFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344454444321 22333333333 44556666666655544444444444444444444
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.04 E-value=1.4e+02 Score=23.51 Aligned_cols=22 Identities=0% Similarity=-0.067 Sum_probs=11.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 048258 265 FCKVNMMDRATEICREMRDRDI 286 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~ 286 (504)
.++.|+.+.+..+++.+.+.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCC
Confidence 3445666655555555544443
No 308
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.92 E-value=26 Score=20.77 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 048258 167 SEAAAILRKMGDRGYLPESSTFDYTVTCL 195 (504)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (504)
++|.+.|.+|+...-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665544444555666666555
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.35 E-value=29 Score=28.33 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 048258 473 ETLVQQGRFEEAHDIVKTSKER 494 (504)
Q Consensus 473 ~~~~~~g~~~~a~~~~~~~~~~ 494 (504)
......|+.+-+.-++++-...
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCCc
Confidence 3345567777666666665544
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.25 E-value=2.5e+02 Score=25.91 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChh--h-HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 048258 80 VYTYTILIDGFCNAKRVAEVFRVLEIMKERNV-CPNEA--T-VRSLVHGVFRCLDPHKAFELLIRFMEREP 146 (504)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
...+|.+++.|...+.+++|.++..+..--.. .++.. . +..+.+.+.-.+++.+|.+.+.......|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 44567777777777777777777776641000 01111 1 12234555566677777776666665443
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.47 E-value=1.1e+02 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 048258 434 SALIKALIKSGRFDEAKQTFLSMEQNGCNPD 464 (504)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 464 (504)
+.+..++........-.++++.+.+.|..++
T Consensus 142 t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 142 TALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 3444433332223334566666667665554
No 312
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.41 E-value=95 Score=20.73 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCChhhHHHH
Q 048258 414 AEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFLSME-----QNGCNPDSYTSNLI 471 (504)
Q Consensus 414 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 471 (504)
|.++.+++...|+.|+..+...++..|...+- + +.++.++.. ..|..|+...+..+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 55566666666777777777777777666553 2 444444332 23556655554443
No 313
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.31 E-value=1.5e+02 Score=22.83 Aligned_cols=174 Identities=10% Similarity=-0.025 Sum_probs=100.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 048258 42 KPDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSL 121 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
.++...-...+..+.+.|..+ +...+..+.. .+|...-...+.++...+.. ++...+..+.. .++..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHH
Confidence 457777777777777777744 4444444444 24666666667777777764 34444444443 3577777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCCh
Q 048258 122 VHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDL 201 (504)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (504)
+.++...++.+ +...+..+.. .++..+-...+.++...+..+ +...+..+.. .++...-...+.++...++
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 77888877754 3344444443 234445555566666666543 4455555543 3466666667777777765
Q ss_pred hhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 048258 202 NETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR 235 (504)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (504)
.++...+..+.+. ++..+-.....++...+.
T Consensus 173 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 173 ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 5566666666654 345555555555554443
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.15 E-value=2.1e+02 Score=24.26 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
...++.-|...|+.++|...++.+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4578899999999999999999875
No 315
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.88 E-value=2.3e+02 Score=24.72 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMSVDQCKPD---RFTYNILIHGICRIGV--VDEALRLVKQMEGLGYAP 78 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~ 78 (504)
...++.-|...|+.++|...++.+. .|+ ......++......++ .+.+-.++..+...++-+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 4678899999999999999999986 343 2233333333333332 234556666666655433
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.72 E-value=95 Score=23.18 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=35.3
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 048258 211 FIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKD--RLVSNVNSYNMVIDCFCKVNM 270 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 270 (504)
+.+.|.+.+.. -..++..+...+..-.|.++++.+.+. ++..+..|...-+..+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34446665443 233445555666677777777777766 555566665555666666654
No 317
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.71 E-value=57 Score=18.81 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHH
Q 048258 450 KQTFLSMEQNGCNPDSYTSNLILETLVQQGR--FEEAHDIVKTS 491 (504)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~ 491 (504)
.+.++.+++.|++++ ....++...|. .+.|.+++.+|
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 344555555554432 23344455555 66666666665
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.12 E-value=1.4e+02 Score=21.90 Aligned_cols=58 Identities=3% Similarity=0.009 Sum_probs=29.0
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 71 MEGLGYAPNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4455544333 233444555555556666667766666554445544444444444444
No 319
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.82 E-value=2.5e+02 Score=24.45 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
...++.-|...++.++|...++.+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4566777777888888888777765
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.45 E-value=2.1e+02 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=6.4
Q ss_pred HhcCCHHHHHHHHHH
Q 048258 371 CAIGDVARSLRLFQK 385 (504)
Q Consensus 371 ~~~g~~~~a~~~~~~ 385 (504)
+..|+.+-+.-+++.
T Consensus 169 ~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 169 IKNGHVDMMILLLDY 183 (285)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHc
Confidence 344444444444433
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.65 E-value=1e+02 Score=21.91 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHHHhC
Q 048258 408 MNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 408 ~g~~~~a~~~~~~~~~~ 424 (504)
.+..-.|.++++.+.+.
T Consensus 23 ~~~~~sa~ei~~~l~~~ 39 (131)
T 2o03_A 23 LDDFRSAQELHDELRRR 39 (131)
T ss_dssp CCSCEEHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 33344455555555444
No 322
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.84 E-value=1.8e+02 Score=22.36 Aligned_cols=172 Identities=11% Similarity=-0.063 Sum_probs=100.1
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCcchhHHHHHH
Q 048258 78 PNVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCLDPHKAFELLIRFMEREPLTQKLVCNTLL 157 (504)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (504)
++...-...+..+.+.|.. .+...+..+... ++..+-...+.++...++.+. ...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 4666666666777777663 344444444442 466677777777777776543 333444333 23445555566
Q ss_pred HHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcH
Q 048258 158 YRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDV 237 (504)
Q Consensus 158 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (504)
.++.+.+..+ +...+..+.. .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 6666666643 4444444543 356666667777777776643 4455555543 4566777777778877776 5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 238 EGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
++...+..+.+.. +..+-...+.++.+.+
T Consensus 174 ~~~~~L~~~l~d~---~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 174 RVRAAMEKLAETG---TGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHhCC---CHHHHHHHHHHHHhcC
Confidence 5666666666542 5555555566655544
No 323
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.69 E-value=1.7e+02 Score=26.58 Aligned_cols=60 Identities=7% Similarity=0.005 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh--------hhH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048258 434 SALIKALIKSGRFDEAKQTFLSMEQNGCNPDS--------YTS-NLILETLVQQGRFEEAHDIVKTSKE 493 (504)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 493 (504)
+.+...|.+.|+.+-+..+++.+...+..|+. .+| ..+++.+...+++.+|.+.+..+.+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 44455555555555555555555544332211 122 2334455556666666666555544
No 324
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.31 E-value=1e+02 Score=19.38 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=27.6
Q ss_pred HHhCCCCCcHHhHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 71 MEGLGYAPNVYTYTILIDGFCNAK-RVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444554444432 33444444433 44556666666655544444444444444444443
No 325
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.21 E-value=1.2e+02 Score=21.49 Aligned_cols=42 Identities=2% Similarity=-0.049 Sum_probs=21.8
Q ss_pred HHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 228 EALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
..+...+..-.|.++++.+.+.++..+..+....+..+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333344455556666666655555545555444445554444
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.19 E-value=97 Score=22.35 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=8.7
Q ss_pred ccCCHHHHHHHHHHHHhCC
Q 048258 407 RMNKIEKAEKAFFSMLTLG 425 (504)
Q Consensus 407 ~~g~~~~a~~~~~~~~~~~ 425 (504)
..+..-.|.++++.+.+.+
T Consensus 25 ~~~~h~sa~eI~~~l~~~~ 43 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKHKG 43 (139)
T ss_dssp TCSSCEEHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhC
Confidence 3333444555555554443
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.89 E-value=3.5e+02 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 048258 433 YSALIKALIKSGRFDEAKQTFLSMEQN 459 (504)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 459 (504)
|..++..+-+.+-++-+.++.+.+++.
T Consensus 900 Y~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 900 YLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 455556666666666666666666643
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.80 E-value=2e+02 Score=22.39 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhH-----HHHHHHHHccCCHHHHHHHHHHHHhC
Q 048258 376 VARSLRLFQKMQADRISPDIYTF-----NALIQSFCRMNKIEKAEKAFFSMLTL 424 (504)
Q Consensus 376 ~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~ 424 (504)
++.|+.+|+.+.+.- ++-.... ...+..|.+.|.+++|.+++++....
T Consensus 94 LESAl~v~~~I~~e~-~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEH-DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 456777776665542 1111111 22345677888888888888886654
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.58 E-value=1.7e+02 Score=21.45 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=30.2
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048258 211 FIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVN 269 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 269 (504)
+.+.|.+++..- ..++..+...+..-.|.++++.+.+.++..+..+....+..+...|
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555544332 2333444445556667777777766655555555555555555554
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.45 E-value=60 Score=26.31 Aligned_cols=52 Identities=8% Similarity=-0.118 Sum_probs=25.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHh--cCCchHHHHHHHHHH
Q 048258 265 FCKVNMMDRATEICREMRDRDIAPNLV-------TFNTLISGHC--KDAEVHKTRELLVML 316 (504)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 316 (504)
.++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 345566666666666555544333321 2233333321 456666666666554
No 331
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.91 E-value=1.1e+02 Score=22.07 Aligned_cols=46 Identities=7% Similarity=0.073 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 048258 84 TILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRCL 129 (504)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (504)
..+++.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344555555555566666666665554445444444444444443
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.23 E-value=1.9e+02 Score=21.63 Aligned_cols=50 Identities=4% Similarity=-0.152 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC--cHHhHHHHHH-HH-----HhcCChhhHHHHHHHHHH
Q 048258 59 GVVDEALRLVKQMEGLGYAP--NVYTYTILID-GF-----CNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 59 g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~~-----~~~g~~~~a~~~~~~~~~ 108 (504)
|++-+|-++++..-.....+ +...|..||+ +. .+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666655443233 3444555555 21 234666666666666544
No 333
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.77 E-value=2e+02 Score=21.82 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 18 DALVKSNSIDLAYLKFQQMSVDQCKPDRFTYNILIH-GICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
.-+.+-.+++.+.-+-.-+.. +..-|..++. .+.-+|.+.+++-++...- ..+..-|..| +|-+..++
T Consensus 10 ~Ks~kY~dYdt~~fLsa~L~~-----~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdY 78 (242)
T 3kae_A 10 CKSIRYRDYETAIFLAACLLP-----CKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDY 78 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCH
T ss_pred HHHhhcccccHHHHHHHHHcc-----CChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHH
Confidence 345566778877765544442 2224555443 3456788988877665432 2233334433 35677899
Q ss_pred hhHHHHHHHHHHcCCC
Q 048258 97 AEVFRVLEIMKERNVC 112 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~ 112 (504)
..|+..++.+.+..+.
T Consensus 79 kkA~~~le~il~~kvd 94 (242)
T 3kae_A 79 KKAIKSLESILEGKVE 94 (242)
T ss_dssp HHHHHHHHHHHTTCSB
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999865444
No 334
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.74 E-value=90 Score=23.44 Aligned_cols=25 Identities=4% Similarity=0.154 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhh
Q 048258 13 YNAVIDALVKSNSIDLAYLKFQQMS 37 (504)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (504)
...++.-|...|+.++|...++.+.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888889998888888876
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.63 E-value=2.9e+02 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 048258 258 YNMVIDCFCKVNMMDRATEICRE 280 (504)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~ 280 (504)
...++..+.+....+.+.++|.+
T Consensus 144 l~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 144 LLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHH
Confidence 33444555555556666666653
No 336
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.39 E-value=2.2e+02 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048258 50 ILIHGICRIGVVDEALRLVKQME 72 (504)
Q Consensus 50 ~l~~~~~~~g~~~~a~~~~~~~~ 72 (504)
.++.-|...|+.++|.+.++++.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC
Confidence 34444555555555555555553
No 337
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.48 E-value=1.1e+02 Score=20.22 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHh
Q 048258 12 LYNAVIDALVKSNSIDLAYLKFQQM 36 (504)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~ 36 (504)
.+....+.+.+.|+|++|++..+..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445566667777777776665544
No 338
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.27 E-value=2.3e+02 Score=22.06 Aligned_cols=221 Identities=10% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCch
Q 048258 227 MEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMDRATEICREMRDRDIAPNLVTFNTLISGHCKDAEV 306 (504)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (504)
+...+..|+.+....+++ ....+......-...+...+..|+.+-+..+++.-.......+....+.+..+.....
T Consensus 13 l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-- 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH-- 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC--
T ss_pred HHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC--
Q ss_pred HHHHHHHHHHHHCCCCccHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHHHHH
Q 048258 307 HKTRELLVMLLECGFKPDKFTFN--SMIDCLCRAHRFEDALDCLSEMVEWGVPPNTITYN--ILIRSLCAIGDVARSLRL 382 (504)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~ 382 (504)
.++++.+.+.|..++..... ..+...+..|+.+ +++.+.+.|..++..... ..+...+..+......++
T Consensus 89 ---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 161 (240)
T 3eu9_A 89 ---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161 (240)
T ss_dssp ---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred ---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCChhHHHHHHHHHHhcC
Q 048258 383 FQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYS--ALIKALIKSGRFDEAKQTFLSMEQNG 460 (504)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~ 460 (504)
+.+....-...+...-.+.+...+..|+.+-+..+++. |..++..... ..+....+.|+.+-+..+++...+.+
T Consensus 162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Q ss_pred CC
Q 048258 461 CN 462 (504)
Q Consensus 461 ~~ 462 (504)
+.
T Consensus 238 ~~ 239 (240)
T 3eu9_A 238 YD 239 (240)
T ss_dssp --
T ss_pred cC
No 339
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.15 E-value=2.7e+02 Score=22.72 Aligned_cols=219 Identities=11% Similarity=0.010 Sum_probs=111.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh----hhHHHHHHHHHHcCCCCChhhH
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV----AEVFRVLEIMKERNVCPNEATV 118 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~ 118 (504)
++...-...+.++...|.. .+...+..+... ++...-...+.++.+.|.. .....++...... .++..+-
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 4555555566666666643 445555555542 4555555555666666532 2233344322222 2466665
Q ss_pred HHHHHHHHhcCC-----hHHHHHHHHHHHhcCCCcchhHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 048258 119 RSLVHGVFRCLD-----PHKAFELLIRFMEREPLTQKLVCNTLLYRLSNNSMASEAAAILRKMGDRGYLPESSTFDYTVT 193 (504)
Q Consensus 119 ~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (504)
...+.++...+. ...+...+..... .++..+-...+.++...+..+ +...+..+.. .++...-...+.
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 566666555541 2344444444433 234455555556666666533 4444444443 245544445555
Q ss_pred HHHccC-ChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCcHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048258 194 CLVTGL-DLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGRDVEGDRYLNHVFKDRLVSNVNSYNMVIDCFCKVNMMD 272 (504)
Q Consensus 194 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (504)
++...+ +...+...+..+.+ .++..+-...+.++.+.++.. +...+....+.. + .....+.++.+.|..
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d~---~--vr~~a~~aL~~i~~~- 251 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKKN---T--VYDDIIEAAGELGDK- 251 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTSS---S--CCHHHHHHHHHHCCG-
T ss_pred HHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcCc---c--HHHHHHHHHHhcCch-
Confidence 555444 23445555555543 346666677777787777544 444444444331 2 223445666666764
Q ss_pred HHHHHHHHHHhC
Q 048258 273 RATEICREMRDR 284 (504)
Q Consensus 273 ~a~~~~~~~~~~ 284 (504)
.+...+..+...
T Consensus 252 ~~~~~L~~~l~~ 263 (280)
T 1oyz_A 252 TLLPVLDTMLYK 263 (280)
T ss_dssp GGHHHHHHHHTT
T ss_pred hhhHHHHHHHhc
Confidence 566666666554
No 340
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.86 E-value=2.2e+02 Score=21.55 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHhcCCHHHHHHHHHHH-HhCCCCCCHHhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCc
Q 048258 370 LCAIGDVARSLRLFQKM-QADRISPDIYTFNALIQSFCRMNK-IEKAEKAFFSMLTLGLRPDN 430 (504)
Q Consensus 370 ~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~ 430 (504)
.+..|+.+-+..+++.- .... ..+..-.+.+..+. ..++ ...-.++.+.+.+.|..++.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCc
Confidence 34556666555555443 1111 11222223333333 3333 23334555666676666553
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.85 E-value=1.2e+02 Score=21.21 Aligned_cols=18 Identities=0% Similarity=-0.210 Sum_probs=9.0
Q ss_pred HhcCChhhHHHHHHHHHH
Q 048258 91 CNAKRVAEVFRVLEIMKE 108 (504)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~ 108 (504)
...++++.|.++.-.+..
T Consensus 72 l~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 72 LLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344555555555555443
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.18 E-value=3.8e+02 Score=24.17 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=32.1
Q ss_pred ccCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHhCC
Q 048258 197 TGLDLNETCGILDTFIKRGVKPRFSTYLLLMEALYKAGR-----DVEGDRYLNHVFKDR 250 (504)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 250 (504)
+..+.+.|+.++..|.+.|..|....-..+..+.-.-|. ...|...++.+..-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 356788888888888888766655544444445444443 233444555555555
No 343
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.68 E-value=97 Score=23.46 Aligned_cols=53 Identities=9% Similarity=0.041 Sum_probs=33.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCh
Q 048258 43 PDRFTYNILIHGICRIGVVDEALRLVKQMEGLGYAPNVYTYTILIDGFCNAKRV 96 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (504)
|....++.++..++...-.+.++-.+.+....| ..+..+|.--++.+++.--+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 344445777777777666777777777777666 45666666666666554433
No 344
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.11 E-value=1.3e+02 Score=17.88 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=13.6
Q ss_pred cCCChHHHHHHHHHHhhCCCCCC
Q 048258 162 NNSMASEAAAILRKMGDRGYLPE 184 (504)
Q Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~ 184 (504)
..|+.+.|...+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35666666666666655544443
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.90 E-value=2.7e+02 Score=21.68 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhc---CCchHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCh
Q 048258 289 NLVTFNTLISGHCK---DAEVHKTRELLVMLLECGFKPDKFTFNSMIDCLCRAHR-----FEDALDCLSEMVEWGVPPNT 360 (504)
Q Consensus 289 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 360 (504)
+....--+++++.+ ..+++.|+-.+-+|++.| .|.-..-..++.+...-|. ...|...++.....|.+--.
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 88 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEAR 88 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048258 361 ITYNILIRSLCAIGDVARSLRLFQKMQA 388 (504)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 388 (504)
......+..++..-+...+...+..+.+
T Consensus 89 i~LaqaviyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 89 IPLADVVVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHH
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.74 E-value=2.5e+02 Score=20.91 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHH-H-----HHccCCHHHHHHHHHHHHh
Q 048258 373 IGDVARSLRLFQKMQADRISP--DIYTFNALIQ-S-----FCRMNKIEKAEKAFFSMLT 423 (504)
Q Consensus 373 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 423 (504)
.|++-+|-++|+.+-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777776553344 3445666666 2 2356777777777777665
No 347
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.44 E-value=3.4e+02 Score=22.24 Aligned_cols=170 Identities=9% Similarity=-0.017 Sum_probs=0.0
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCcchhHHHHHH
Q 048258 79 NVYTYTILIDGFCNAKRVAEVFRVLEIMKERNVCPNEATVRSLVHGVFRC-LDPHKAFELLIRFMEREPLTQKLVCNTLL 157 (504)
Q Consensus 79 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (504)
+......+....-+.+++++..+....+.+.+...+..-.+.|-.+|-.. |....+.+++..+.+............++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHhcC--CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHccCC-----------------hhhHHHHHHHHHhc---C
Q 048258 158 YRLSNN--SMASEAAAILRKMGDRGYLPESSTFDYTVTCLVTGLD-----------------LNETCGILDTFIKR---G 215 (504)
Q Consensus 158 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~---~ 215 (504)
..|... ......-.-.-.+++..+.|+..+-..-+-.+--.|| .+.+.+.|+...+. .
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCccHHHHHHHHHHHH-----hcCCcHHHHHHHHHHHh
Q 048258 216 VKPRFSTYLLLMEALY-----KAGRDVEGDRYLNHVFK 248 (504)
Q Consensus 216 ~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 248 (504)
++|+......++-.++ -.+++++|.++.++++.
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 348
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.08 E-value=3.9e+02 Score=22.79 Aligned_cols=70 Identities=13% Similarity=0.005 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 048258 410 KIEKAEKAFFSMLTLGLRPD--NFSYSALIKALIKSGRFDEAKQTFLSMEQNGCNPDSYTSNLILETLVQQGRFEEAHDI 487 (504)
Q Consensus 410 ~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 487 (504)
+.....++-..+-.-.+.|. .-++...+....+.+++..|..+.+++++.+ |+.. ..++|+++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~-------------~a~qArki 249 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII--SSGP-------------RAEQARKI 249 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSH-------------HHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHH-------------HHHHHHHH
Confidence 33444555444444444444 2245566667778888888888888888754 3211 23556666
Q ss_pred HHHHHHc
Q 048258 488 VKTSKER 494 (504)
Q Consensus 488 ~~~~~~~ 494 (504)
+....+.
T Consensus 250 l~~ce~~ 256 (325)
T 3mv2_A 250 KNKADSM 256 (325)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 6666554
No 349
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.01 E-value=2.6e+02 Score=20.69 Aligned_cols=100 Identities=10% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 048258 375 DVARSLRLFQKMQADRISPDIYTFNALIQSFCRMNKIEKAEKAFFSMLTLGLRPDNFSYSALIKALIKSGRFDEAKQTFL 454 (504)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (504)
..+....++..+.+.|.-.|...-...+....+.| .....+-.++...|+ +..+....+..+-. ...+.|..+++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI--~~~~i~~al~~~~~-d~~~~a~~l~~ 119 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI--SREATEKAMREADI-DWAALARDQAT 119 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC--CHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC--CHHHHHHHHHHcCH-hHHHHHHHHHH
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcC
Q 048258 455 SMEQNGCNPDSYTSNLILETLVQQG 479 (504)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~g 479 (504)
+-.....+++......++..+.+.|
T Consensus 120 kk~~~~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 120 RKYGEPLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHHCSSCCCSHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC
Done!