BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048260
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 107 GVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166
G+ F+ LQA DGHW G L+ L IT H+ + P + +R+EI+RY+
Sbjct: 80 GMTFYVGLQAEDGHW----TGDYGGPLFLLPGLLITCHVARI-PLPAGYREEIVRYLRSV 134
Query: 167 QNEDGGWGLHIEGHST 182
Q DGGWGLHIE ST
Sbjct: 135 QLPDGGWGLHIEDKST 150
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 107 GVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166
G+ F+ LQA DGHW G L+ L IT H+ + P + +R+EI+RY+
Sbjct: 80 GMTFYVGLQAEDGHW----TGDYGGPLFLLPGLLITCHVARI-PLPAGYREEIVRYLRSV 134
Query: 167 QNEDGGWGLHIEGHST 182
Q DGGWGLHIE ST
Sbjct: 135 QLPDGGWGLHIEDKST 150
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKE----- 158
+RR V + Q DG W V LY TG + + A +E
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWG---------VNYLYGTGAVVSALKAVGIDTREPYIQK 518
Query: 159 ILRYIHYHQNEDGGWG 174
L ++ HQN DGGWG
Sbjct: 519 ALDWVEQHQNPDGGWG 534
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYI 163
L R V + + Q +G+W GPL L + M + + + + ++I RY+
Sbjct: 15 LDRAVEYLLSCQKDEGYW----WGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYL 68
Query: 164 HYHQNEDGGWGLHIEG 179
+ Q EDG W L+ G
Sbjct: 69 LHEQREDGTWALYPGG 84
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKE----- 158
+RR V + Q DG W V LY TG + + A +E
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWG---------VNYLYGTGAVVSALKAVGIDTREPYIQK 518
Query: 159 ILRYIHYHQNEDGGWG 174
L ++ HQN DGGWG
Sbjct: 519 ALDWVEQHQNPDGGWG 534
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYI 163
L R V + + Q +G+W GPL L + M + + + + ++I RY+
Sbjct: 15 LDRAVEYLLSCQKDEGYW----WGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYL 68
Query: 164 HYHQNEDGGWGLHIEG 179
+ Q EDG W L+ G
Sbjct: 69 LHEQREDGTWALYPGG 84
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKE----- 158
+RR V + Q DG W V LY TG + + A +E
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWG---------VNYLYGTGAVVSALKAVGIDTREPYIQK 518
Query: 159 ILRYIHYHQNEDGGWG 174
L ++ HQN DGGWG
Sbjct: 519 ALDWVEQHQNPDGGWG 534
Score = 29.6 bits (65), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYI 163
L R V + + Q +G+W GPL L + M + + + + ++I RY+
Sbjct: 15 LDRAVEYLLSCQKDEGYW----WGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYL 68
Query: 164 HYHQNEDGGWGLHIEG 179
+ Q EDG W L+ G
Sbjct: 69 LHEQREDGTWALYPGG 84
>pdb|2AQX|A Chain A, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
pdb|2AQX|B Chain B, Crystal Structure Of The Catalytic And Cam-binding Domains
Of Inositol 1,4,5-trisphosphate 3-kinase B
Length = 289
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 26 RQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKE------KKFKQT 79
+++ + DPEA ++EE+AQ + + R+ + +A L +R++ +K+ + FK+T
Sbjct: 118 QKMVEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGSVNRDFKKT 177
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex
Aeolicus
Length = 242
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 44 VEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTI 80
+EA++L N R L+ + DLL +M+ + +++F +T+
Sbjct: 9 IEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETV 45
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 4 LKVGEGNGEKD--AYIYSTNNYAGRQIW--QFDPEAGSDEERAQVEAARLHFYNNRDHLK 59
LK +G+ K+ Y + +N + W Q D G + + +V A +
Sbjct: 326 LKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAY-------- 377
Query: 60 PSADLLWRMQFLKEKKFKQTIPQVKIK-VDG 89
P D LW +QF QT P+ K +DG
Sbjct: 378 PHRDKLWLIQFYDRYDNNQTYPETSFKFLDG 408
>pdb|1W2C|A Chain A, Human Inositol (1,4,5) Trisphosphate 3-Kinase Complexed
With Mn2+AMPPNPINS(1,4,5)P3
pdb|1W2C|B Chain B, Human Inositol (1,4,5) Trisphosphate 3-Kinase Complexed
With Mn2+AMPPNPINS(1,4,5)P3
pdb|1W2D|A Chain A, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Complexed
With Mn2+ADPINS(1,3,4,5)P4
pdb|1W2D|B Chain B, Human Inositol (1,4,5)-Trisphosphate 3-Kinase Complexed
With Mn2+ADPINS(1,3,4,5)P4
Length = 265
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 26 RQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKE 73
+++ DPEA ++EE AQ + + R+ + S L +R++ +K+
Sbjct: 94 KKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKK 141
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 12 EKDAYIYSTNNYAGRQIWQFDPEAGSDEE--RAQVEAAR 48
E DA YS + YA ++ DP GS+E+ R EA +
Sbjct: 172 ENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARK 210
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 12 EKDAYIYSTNNYAGRQIWQFDPEAGSDEE--RAQVEAAR 48
E DA YS + YA ++ DP GS+E+ R EA +
Sbjct: 172 ENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARK 210
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 12 EKDAYIYSTNNYAGRQIWQFDPEAGSDEE--RAQVEAAR 48
E DA YS + YA ++ DP GS+E+ R EA +
Sbjct: 172 ENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARK 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,753,030
Number of Sequences: 62578
Number of extensions: 214165
Number of successful extensions: 587
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 29
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)