Query 048260
Match_columns 182
No_of_seqs 244 out of 841
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 1.8E-63 3.9E-68 477.8 17.9 175 1-182 1-175 (759)
2 PLN02993 lupeol synthase 100.0 6E-63 1.3E-67 474.6 17.9 175 1-182 1-175 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 1.8E-56 4E-61 421.8 9.5 175 1-182 1-175 (760)
4 cd02892 SQCY_1 Squalene cyclas 99.8 1.5E-20 3.2E-25 178.2 7.0 74 104-182 1-74 (634)
5 TIGR01507 hopene_cyclase squal 99.8 4.8E-20 1E-24 175.6 9.3 79 97-182 12-90 (635)
6 TIGR01787 squalene_cyclas squa 99.8 2.8E-20 6.1E-25 176.6 7.4 74 103-182 1-74 (621)
7 PLN02993 lupeol synthase 99.8 2.5E-18 5.5E-23 166.6 9.4 117 57-177 514-662 (763)
8 TIGR03463 osq_cycl 2,3-oxidosq 99.7 1.4E-18 3.1E-23 165.4 6.9 69 109-182 2-70 (634)
9 PLN03012 Camelliol C synthase 99.7 5.7E-18 1.2E-22 164.0 9.3 118 57-178 514-663 (759)
10 TIGR01507 hopene_cyclase squal 99.7 2.5E-16 5.5E-21 150.2 9.7 115 57-176 404-541 (635)
11 TIGR03463 osq_cycl 2,3-oxidosq 99.6 6.8E-15 1.5E-19 140.4 9.3 115 57-176 401-547 (634)
12 TIGR01787 squalene_cyclas squa 99.5 2.2E-14 4.8E-19 136.6 9.9 118 56-177 388-532 (621)
13 PF13243 Prenyltrans_1: Prenyl 99.4 1.9E-14 4.2E-19 105.9 0.7 68 104-176 1-68 (109)
14 cd02892 SQCY_1 Squalene cyclas 99.4 2.3E-12 4.9E-17 122.6 9.1 117 56-176 400-547 (634)
15 KOG0497 Oxidosqualene-lanoster 99.2 1.2E-11 2.7E-16 118.6 5.6 75 101-179 588-663 (760)
16 COG1657 SqhC Squalene cyclase 99.1 5.9E-11 1.3E-15 111.4 6.1 156 20-181 245-428 (517)
17 PF13249 Prenyltrans_2: Prenyl 99.0 8.8E-10 1.9E-14 80.8 4.8 64 108-179 1-67 (113)
18 cd02889 SQCY Squalene cyclase 98.9 2.6E-09 5.7E-14 92.5 5.6 69 104-177 1-83 (348)
19 PF13249 Prenyltrans_2: Prenyl 98.8 2.9E-09 6.2E-14 78.1 3.8 66 104-174 42-112 (113)
20 cd02889 SQCY Squalene cyclase 98.6 9.4E-08 2E-12 82.8 8.0 69 102-175 191-260 (348)
21 cd02890 PTase Protein prenyltr 98.5 4.6E-07 1E-11 77.5 7.6 72 104-181 100-173 (286)
22 cd00688 ISOPREN_C2_like This g 98.4 5E-07 1.1E-11 73.4 6.8 75 101-178 51-128 (300)
23 cd02897 A2M_2 Proteins similar 98.4 1.3E-06 2.8E-11 75.2 8.4 72 101-176 48-124 (292)
24 PF13243 Prenyltrans_1: Prenyl 98.4 2.8E-07 6.1E-12 67.6 3.7 63 101-168 45-107 (109)
25 cd02891 A2M_like Proteins simi 98.4 1.2E-06 2.6E-11 73.7 7.6 77 96-177 44-124 (282)
26 cd02894 GGTase-II Geranylgeran 98.4 1.4E-06 3.1E-11 75.3 8.0 75 101-181 99-175 (287)
27 cd02896 complement_C3_C4_C5 Pr 98.3 2.8E-06 6E-11 73.9 7.8 76 97-177 48-126 (297)
28 cd00688 ISOPREN_C2_like This g 98.3 2.8E-06 6E-11 69.1 7.2 68 101-173 103-179 (300)
29 PLN03201 RAB geranylgeranyl tr 98.2 6.9E-06 1.5E-10 72.7 7.7 72 104-181 106-179 (316)
30 cd02890 PTase Protein prenyltr 98.0 1.3E-05 2.7E-10 68.7 7.1 75 101-179 46-123 (286)
31 cd02895 GGTase-I Geranylgerany 98.0 1.5E-05 3.2E-10 70.2 6.6 73 104-180 114-191 (307)
32 PF00432 Prenyltrans: Prenyltr 98.0 7.6E-06 1.6E-10 52.5 3.1 27 155-181 2-28 (44)
33 KOG0366 Protein geranylgeranyl 97.8 4.4E-05 9.6E-10 67.4 5.9 71 105-181 117-189 (329)
34 PLN03201 RAB geranylgeranyl tr 97.7 0.00011 2.3E-09 65.2 6.5 71 104-180 58-130 (316)
35 cd02893 FTase Protein farnesyl 97.6 0.00017 3.7E-09 63.3 7.0 75 103-180 48-124 (299)
36 PLN02710 farnesyltranstransfer 97.5 0.00032 6.9E-09 65.4 7.5 146 32-181 7-170 (439)
37 cd02896 complement_C3_C4_C5 Pr 97.4 0.00042 9.1E-09 60.3 7.2 116 43-176 90-227 (297)
38 cd02893 FTase Protein farnesyl 97.4 0.00056 1.2E-08 60.0 7.6 69 105-179 101-171 (299)
39 COG5029 CAL1 Prenyltransferase 97.3 0.00054 1.2E-08 61.7 6.3 68 106-179 130-199 (342)
40 cd02897 A2M_2 Proteins similar 97.3 0.00066 1.4E-08 58.4 6.7 63 101-168 101-174 (292)
41 cd02894 GGTase-II Geranylgeran 97.3 0.0007 1.5E-08 58.7 6.6 69 103-177 149-219 (287)
42 cd02895 GGTase-I Geranylgerany 97.2 0.0008 1.7E-08 59.3 6.4 68 105-177 52-135 (307)
43 PLN02710 farnesyltranstransfer 97.2 0.0014 3.1E-08 61.1 7.8 70 104-179 145-216 (439)
44 TIGR02474 pec_lyase pectate ly 96.9 0.0033 7.2E-08 55.9 7.5 77 101-177 66-164 (290)
45 PF07678 A2M_comp: A-macroglob 96.7 0.0025 5.3E-08 54.2 4.7 67 107-176 2-71 (246)
46 PF00432 Prenyltrans: Prenyltr 96.7 0.0044 9.5E-08 39.6 4.7 40 104-143 3-44 (44)
47 TIGR02474 pec_lyase pectate ly 96.2 0.028 6.1E-07 50.0 8.5 97 30-128 40-163 (290)
48 KOG0367 Protein geranylgeranyl 95.9 0.017 3.6E-07 52.1 5.6 68 108-181 131-201 (347)
49 cd02891 A2M_like Proteins simi 95.7 0.032 6.9E-07 46.9 6.5 62 101-168 100-172 (282)
50 KOG0365 Beta subunit of farnes 95.7 0.017 3.6E-07 53.1 4.9 79 100-181 118-198 (423)
51 PF07678 A2M_comp: A-macroglob 94.6 0.021 4.6E-07 48.5 2.2 66 101-166 48-125 (246)
52 PRK01631 hypothetical protein; 89.8 0.57 1.2E-05 34.2 4.0 49 35-102 19-67 (76)
53 PF09492 Pec_lyase: Pectic aci 89.8 1.3 2.8E-05 39.6 7.0 77 101-177 61-159 (289)
54 PF01122 Cobalamin_bind: Eukar 89.7 0.66 1.4E-05 42.1 5.2 67 97-174 211-278 (326)
55 PLN02592 ent-copalyl diphospha 89.3 0.34 7.3E-06 48.6 3.3 23 154-176 115-137 (800)
56 PF05979 DUF896: Bacterial pro 88.7 0.31 6.8E-06 34.5 2.0 46 36-99 19-64 (65)
57 COG4224 Uncharacterized protei 88.6 0.64 1.4E-05 33.9 3.5 47 35-99 20-66 (77)
58 PRK02539 hypothetical protein; 88.3 0.67 1.4E-05 34.5 3.5 47 35-99 20-66 (85)
59 PRK01546 hypothetical protein; 87.8 0.74 1.6E-05 33.8 3.5 47 35-99 21-67 (79)
60 KOG0367 Protein geranylgeranyl 86.6 1.3 2.9E-05 40.1 5.2 68 105-174 177-248 (347)
61 PLN02279 ent-kaur-16-ene synth 85.9 0.57 1.2E-05 46.9 2.6 23 154-176 73-95 (784)
62 COG1689 Uncharacterized protei 85.6 0.45 9.7E-06 41.6 1.5 27 156-182 230-257 (274)
63 COG5029 CAL1 Prenyltransferase 84.4 1.1 2.5E-05 40.7 3.7 74 103-179 76-151 (342)
64 KOG0366 Protein geranylgeranyl 81.8 2.9 6.4E-05 37.5 5.1 62 106-173 70-133 (329)
65 PLN02592 ent-copalyl diphospha 81.6 2.2 4.7E-05 43.0 4.7 55 104-165 117-175 (800)
66 PF07470 Glyco_hydro_88: Glyco 74.6 7.3 0.00016 34.0 5.5 70 101-172 214-294 (336)
67 PLN02279 ent-kaur-16-ene synth 71.9 6.2 0.00013 39.7 4.8 56 103-165 74-135 (784)
68 PF09492 Pec_lyase: Pectic aci 71.7 3.3 7.3E-05 36.9 2.7 24 154-177 62-85 (289)
69 COG1657 SqhC Squalene cyclase 69.8 4.5 9.9E-05 38.9 3.3 112 56-176 352-481 (517)
70 KOG0365 Beta subunit of farnes 69.2 15 0.00033 34.2 6.4 64 107-176 176-241 (423)
71 TIGR01577 oligosac_amyl oligos 66.6 25 0.00055 33.8 7.6 65 101-173 255-333 (616)
72 COG1689 Uncharacterized protei 56.9 15 0.00032 32.4 3.7 63 103-172 7-72 (274)
73 smart00120 HX Hemopexin-like r 51.5 8.3 0.00018 23.5 1.1 13 23-35 15-27 (45)
74 COG2173 DdpX D-alanyl-D-alanin 49.0 6.7 0.00014 33.7 0.4 19 19-37 51-70 (211)
75 PF12899 Glyco_hydro_100: Alka 48.4 25 0.00055 33.2 4.1 48 118-181 360-407 (436)
76 PLN03005 beta-fructofuranosida 44.7 26 0.00056 34.0 3.6 43 130-181 453-495 (550)
77 PLN02973 beta-fructofuranosida 43.6 28 0.00062 33.9 3.7 43 130-181 474-516 (571)
78 PLN02703 beta-fructofuranosida 43.5 28 0.00061 34.2 3.7 43 130-181 506-548 (618)
79 PF00045 Hemopexin: Hemopexin; 43.3 12 0.00025 23.4 0.8 12 23-34 15-26 (45)
80 COG4659 RnfG Predicted NADH:ub 40.7 30 0.00065 29.4 3.0 26 89-115 169-194 (195)
81 COG3592 Uncharacterized conser 39.1 23 0.0005 25.6 1.8 27 14-45 35-61 (74)
82 TIGR01535 glucan_glucosid gluc 37.5 64 0.0014 31.9 5.2 65 101-167 313-386 (648)
83 cd04794 euk_LANCL eukaryotic L 34.3 1.1E+02 0.0023 26.9 5.7 45 98-143 185-237 (343)
84 PF09292 Neil1-DNA_bind: Endon 30.7 25 0.00054 22.6 0.8 15 15-29 15-29 (39)
85 PRK10178 D-alanyl-D-alanine di 29.8 38 0.00082 28.4 2.0 33 18-52 24-58 (184)
86 PF01011 PQQ: PQQ enzyme repea 29.1 36 0.00079 20.5 1.4 22 14-35 9-30 (38)
87 PF06226 DUF1007: Protein of u 27.7 61 0.0013 27.1 2.9 8 26-33 42-49 (212)
88 PF07944 DUF1680: Putative gly 27.2 1E+02 0.0022 29.2 4.5 42 132-178 66-107 (520)
89 cd07355 HN_L-delphilin-R2_like 25.2 73 0.0016 23.5 2.5 23 35-57 15-37 (80)
90 PF05592 Bac_rhamnosid: Bacter 25.0 81 0.0018 29.1 3.5 69 100-169 167-246 (509)
91 PF08124 Lyase_8_N: Polysaccha 24.0 79 0.0017 28.1 3.1 62 96-167 82-149 (324)
92 TIGR01734 D-ala-DACP-lig D-ala 23.8 2.3E+02 0.005 25.1 6.1 75 89-166 21-95 (502)
93 PF07470 Glyco_hydro_88: Glyco 23.6 95 0.0021 27.0 3.5 73 101-180 147-241 (336)
94 TIGR01535 glucan_glucosid gluc 23.4 2.6E+02 0.0056 27.8 6.7 65 101-173 250-333 (648)
95 PF12088 DUF3565: Protein of u 23.3 36 0.00079 23.9 0.6 14 114-127 4-17 (61)
96 COG5397 Uncharacterized conser 22.9 94 0.002 28.3 3.3 29 22-50 39-80 (349)
97 smart00564 PQQ beta-propeller 22.6 55 0.0012 18.3 1.3 19 14-32 15-33 (33)
98 PF10892 DUF2688: Protein of u 22.4 64 0.0014 22.5 1.7 14 35-48 44-57 (60)
99 cd01886 EF-G Elongation factor 21.2 3.7E+02 0.0081 23.1 6.7 49 38-109 190-238 (270)
100 PTZ00491 major vault protein; 21.2 72 0.0016 32.7 2.5 46 16-71 564-609 (850)
101 KOG3760 Heparan sulfate-glucur 20.8 75 0.0016 30.4 2.3 26 153-178 379-404 (594)
102 KOG1366 Alpha-macroglobulin [P 20.7 2.4E+02 0.0051 30.8 6.2 72 101-175 970-1045(1436)
103 PRK08276 long-chain-fatty-acid 20.6 2.5E+02 0.0054 25.0 5.6 56 88-144 6-61 (502)
104 TIGR00811 sit silicon transpor 20.2 28 0.0006 33.6 -0.6 26 31-56 427-453 (545)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.8e-63 Score=477.81 Aligned_cols=175 Identities=72% Similarity=1.263 Sum_probs=171.2
Q ss_pred CceeeecCCCCCCCCceeecCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCC
Q 048260 1 MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTI 80 (182)
Q Consensus 1 mw~lk~~~~~~~~~~~l~s~n~~~grq~wefdp~~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~i 80 (182)
||||||++|+ +++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+|||||||+.|||++++.|
T Consensus 1 ~wrl~~~~~~-~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~~~~ 79 (759)
T PLN03012 1 MWKLKIAEGN-GDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQFLKEKKFEQRI 79 (759)
T ss_pred CCceEeCCCC-CCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHhccCcccCC
Confidence 9999999984 238999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeccCCCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 048260 81 PQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEIL 160 (182)
Q Consensus 81 p~vk~~id~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ 160 (182)
|.||+ ++.++||++++ .++++||++||+++|.+||||+|+++||+|++|++||++|++|.+|+++++ ++++|++
T Consensus 80 p~~~~---~~~~~~~~~~~-~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~--~~~~ei~ 153 (759)
T PLN03012 80 APAKV---EDAEKITFEIA-TNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQ--DHRKEIL 153 (759)
T ss_pred CcccC---CCCcccchHHH-HHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCH--HHHHHHH
Confidence 99999 99999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhccCCCCCccCcCCCCCC
Q 048260 161 RYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 161 ryL~~~QneDGGWGl~~eG~st 182 (182)
|||++|||+|||||+|++||||
T Consensus 154 ryl~~~Qn~DGGWglh~eg~s~ 175 (759)
T PLN03012 154 RYIYCHQKEDGGWGLHIEGHST 175 (759)
T ss_pred HHHHHhccCCCCeecccCCCCc
Confidence 9999999999999999999997
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=6e-63 Score=474.64 Aligned_cols=175 Identities=72% Similarity=1.229 Sum_probs=171.1
Q ss_pred CceeeecCCCCCCCCceeecCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCC
Q 048260 1 MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTI 80 (182)
Q Consensus 1 mw~lk~~~~~~~~~~~l~s~n~~~grq~wefdp~~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~i 80 (182)
||||||++|+ +++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+|||||||+.|||+++++|
T Consensus 1 ~wrl~~~~~~-~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 79 (763)
T PLN02993 1 MWKLKIGEGN-GEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGCSDLLWRMQFLKEAKFEQVI 79 (763)
T ss_pred CCceEeCCCC-CCCcceecccCcCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHhccCcccCC
Confidence 9999999984 238999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeccCCCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 048260 81 PQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEIL 160 (182)
Q Consensus 81 p~vk~~id~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ 160 (182)
|.||+ ++.++||++++ .++++||++||+++|.+||||+|+++||+|++|++||++|++|.||+++++ ++++|++
T Consensus 80 p~~~~---~~~~~~~~~~~-~~a~~ra~~~l~~lQ~~DGhW~~e~~g~~fl~~~~Vi~~~~~g~~~~~~~~--~~~~ei~ 153 (763)
T PLN02993 80 PPVKI---DRGEEITYETA-TNALRRGVSFFSALQASDGHWPGEITGPLFFLPPLVFCLYITGHLEEVFDA--EHRKEML 153 (763)
T ss_pred CcccC---CCCccccHHHH-HHHHHHHHHHHHHhccCCCCcccccCCcchhhHHHHHHHHHhcCCCCCCCH--HHHHHHH
Confidence 99999 99999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhccCCCCCccCcCCCCCC
Q 048260 161 RYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 161 ryL~~~QneDGGWGl~~eG~st 182 (182)
|||++|||+|||||+|++||||
T Consensus 154 ryl~~~Q~~DGGWgl~~eg~s~ 175 (763)
T PLN02993 154 RHIYCHQNEDGGWGLHIESKSV 175 (763)
T ss_pred HHHHHhccCCCCcccccCCCcc
Confidence 9999999999999999999997
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-56 Score=421.84 Aligned_cols=175 Identities=70% Similarity=1.217 Sum_probs=172.3
Q ss_pred CceeeecCCCCCCCCceeecCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCC
Q 048260 1 MWKLKVGEGNGEKDAYIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTI 80 (182)
Q Consensus 1 mw~lk~~~~~~~~~~~l~s~n~~~grq~wefdp~~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~i 80 (182)
||||||++|+ +.+|+|+|||||+|||+||||+++|||||+|+||.||++|..||+..|+|+||++|||+.+|++|.+.|
T Consensus 1 mw~l~~~~~~-~~~~~l~~tn~~~grq~W~~d~~~~~~e~~~~v~~~r~~f~~~~~~~k~s~dl~~r~qf~~E~~~~q~~ 79 (760)
T KOG0497|consen 1 MWRLKIGEGA-GEDPHLFTTNNFVGRQTWEFDADAGGPEELAYVEEARANFSDNRSREKASLDLLWRMQFLREKKFEQVI 79 (760)
T ss_pred Ccceeecccc-CCCCcccccccccCceeEEecCCCCCcchHHHHHHHHHhcCCcchhHHHhcccchhhhhhhhhhhhhcC
Confidence 9999999987 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeccCCCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Q 048260 81 PQVKIKVDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEIL 160 (182)
Q Consensus 81 p~vk~~id~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ 160 (182)
|.||+ .+++.||++.. .++++|++.|+..+|++|||||++++||+|++|++||++|++|+|+.+++. +|+++++
T Consensus 80 p~v~~---~d~e~i~~e~~-~~~lrrgi~f~~~LQa~DGhwp~~~~GPlf~~~~~v~~~yitg~l~~~~~~--ehr~Eli 153 (760)
T KOG0497|consen 80 PRVKI---EDAEEITYEDA-TTALRRGLLFFSALQAPDGHWPGEYSGPLFFLPPLVICLYITGHLEKIFTA--EHRKEIL 153 (760)
T ss_pred CCccc---cccceeehhhh-hhhhhhhHHHHHHhcCCCCCCCCCCCCChhhhhhhhheeeecccCCcccCc--ccHHHHH
Confidence 99999 99999999999 999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhccCCCCCccCcCCCCCC
Q 048260 161 RYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 161 ryL~~~QneDGGWGl~~eG~st 182 (182)
|||+||||+|||||+|+||+||
T Consensus 154 ry~ynhqn~DGGWGlhve~~S~ 175 (760)
T KOG0497|consen 154 RYIYNHQNEDGGWGLHVEGKST 175 (760)
T ss_pred HHHHhccCCCCCccccccCcee
Confidence 9999999999999999999997
No 4
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.82 E-value=1.5e-20 Score=178.18 Aligned_cols=74 Identities=57% Similarity=1.036 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCCC
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~st 182 (182)
++||++||+++|.+||||+||++||+|++|++|+++|++|. .+++ +++++++|||+++||+|||||+|++|+||
T Consensus 1 ~~~~~~~l~~~q~~dG~W~~e~~~~~~~~~~~i~~~~~~~~---~~~~--~~~~~~~~~l~~~q~~dGgw~~~~~~~~~ 74 (634)
T cd02892 1 IRRALEFLLSLQAPDGHWPGELEGPLFITAEYILLLYILGI---PIDP--EHRKEIARYLRNHQNPDGGWGLHHEGPST 74 (634)
T ss_pred ChHHHHHHHHhccCCCceecccCCcchhhHHHHHHHHHhcC---CCCH--HHHHHHHHHHHHhccCCCCccCCCCCCcc
Confidence 47999999999999999999999999999999999999996 4466 99999999999999999999999999986
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.81 E-value=4.8e-20 Score=175.55 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
+++ .+++++|++||+++|.+||||+|++++|+|++|++|+++|++|. ..+ +++++++|||+++||+|||||+|
T Consensus 12 ~~~-~~a~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~g~----~~~--~~~~~~~~~l~~~Q~~DGgWg~~ 84 (635)
T TIGR01507 12 ART-VEAIDRAVDYLLSCQKDEGYWWGELESNVTIEAEYVLLCHILDR----VDR--DRMEKIRNYLLHEQREDGTWALY 84 (635)
T ss_pred HHH-HHHHHHHHHHHHHhccCCCccccccCCcchhcHHHHHHHHHHCC----CcH--HHHHHHHHHHHHhccCCCCccCc
Confidence 356 88999999999999999999999999999999999999999995 335 89999999999999999999999
Q ss_pred CCCCCC
Q 048260 177 IEGHST 182 (182)
Q Consensus 177 ~eG~st 182 (182)
++|+|+
T Consensus 85 ~~~~~~ 90 (635)
T TIGR01507 85 PGGPGD 90 (635)
T ss_pred cCCCcc
Confidence 999986
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.81 E-value=2.8e-20 Score=176.60 Aligned_cols=74 Identities=49% Similarity=0.788 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCCC
Q 048260 103 ALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~st 182 (182)
+++||++||+++|.+||||+|++++++|++|++|+++|++|. ..+ +++++++|||++|||+|||||+|++|+||
T Consensus 1 ~~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~a~~i~~~~~~g~----~~~--~~~~~~~~~l~~~Q~~DGgW~~~~~~~~~ 74 (621)
T TIGR01787 1 TARRAVEFLLSLQAPDGYWWGELEGPLTLLAEYVLLCHIADT----PLP--GYREKIVRYLRHHQNEDGGWGLHIGGKST 74 (621)
T ss_pred CHHHHHHHHHHhccCCCceecccCCccccCHHHHHHHHHhcC----CCh--HHHHHHHHHHHHhcCCCCCeeCCcCCCcc
Confidence 479999999999999999999999999999999999999995 345 88999999999999999999999999986
No 7
>PLN02993 lupeol synthase
Probab=99.75 E-value=2.5e-18 Score=166.59 Aligned_cols=117 Identities=20% Similarity=0.295 Sum_probs=100.0
Q ss_pred CCCchhHHHHhhhh--------hhhc--cccCCCCccee--c--cCCCCCcccHHHH----------H-------HHHHH
Q 048260 57 HLKPSADLLWRMQF--------LKEK--KFKQTIPQVKI--K--VDGDEEEITYETA----------A-------TTALR 105 (182)
Q Consensus 57 ~~~~s~dlL~rmQ~--------~~en--~~~~~ip~vk~--~--id~~~~~it~e~v----------~-------~~al~ 105 (182)
....++|||+.||+ +++| .+...||++++ + ||++..|+|.+++ + ..+|+
T Consensus 514 ~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~ 593 (763)
T PLN02993 514 QLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIE 593 (763)
T ss_pred HHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHH
Confidence 45679999999998 3344 48889999987 5 9999999999877 0 36899
Q ss_pred HHHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260 106 RGVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
||++||.+.|.+||+|+|+|+.++++ |+..|.+|...|. ...+++.++++|+||+++||+|||||+..
T Consensus 594 rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~----~~~~~~~IrrAv~fLls~Q~~DGGWGEs~ 662 (763)
T PLN02993 594 KAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGK----TYNDCLAMRKGVHFLLTIQRDDGGWGESY 662 (763)
T ss_pred HHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCC----CCCCcHHHHHHHHHHHHhcCCCCCcCcCc
Confidence 99999999999999999999988877 8888889988895 33345899999999999999999999864
No 8
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.75 E-value=1.4e-18 Score=165.41 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=64.9
Q ss_pred HHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCCC
Q 048260 109 RFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 109 ~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~st 182 (182)
.||+++|.+||||+|++++++|++|++|+++|++|. .+++ +++++++|||+++||+|||||+|++|+||
T Consensus 2 ~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~~~---~~~~--~~~~~~~~yl~~~Q~~dGgWgl~~~~~~~ 70 (634)
T TIGR03463 2 ARLTETQQPAGCWEGEMIWCPVVTAQVAITRHVVGR---PPEP--EQRAGIIRHFENSQLADGAWGLHPEAPGQ 70 (634)
T ss_pred hhHHhcccCCCccccccCCccccCHHHHHHHHHHcC---CCCH--HHHHHHHHHHHHhccCCCCccCCCCCCcc
Confidence 589999999999999999999999999999999994 4566 89999999999999999999999999986
No 9
>PLN03012 Camelliol C synthase
Probab=99.74 E-value=5.7e-18 Score=163.99 Aligned_cols=118 Identities=15% Similarity=0.268 Sum_probs=99.7
Q ss_pred CCCchhHHHHhhhh--------hhhc--cccCCCC----cceeccCCCCCcccHHHH-----------------HHHHHH
Q 048260 57 HLKPSADLLWRMQF--------LKEK--KFKQTIP----QVKIKVDGDEEEITYETA-----------------ATTALR 105 (182)
Q Consensus 57 ~~~~s~dlL~rmQ~--------~~en--~~~~~ip----~vk~~id~~~~~it~e~v-----------------~~~al~ 105 (182)
....++|||+.||+ ++.+ .+...|| +.++-||++..|+|.+++ -..+|+
T Consensus 514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~ 593 (759)
T PLN03012 514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK 593 (759)
T ss_pred HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence 45679999999998 2333 3777888 777779999999999654 056899
Q ss_pred HHHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCC
Q 048260 106 RGVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIE 178 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~e 178 (182)
||++||++.|.+||+|+|+|+.++++ |+..|.+|...|. -.++++.++++|+||+++||+|||||+...
T Consensus 594 rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~----~~~~~~~Irrav~fLls~Q~~DGGWGEs~~ 663 (759)
T PLN03012 594 KAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGK----TFNDCEAIRKGVHFLLAAQKDNGGWGESYL 663 (759)
T ss_pred HHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCc----cCCCcHHHHHHHHHHHHhcCCCCCcCCCCC
Confidence 99999999999999999999998888 8888999998885 224458999999999999999999998764
No 10
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.66 E-value=2.5e-16 Score=150.18 Aligned_cols=115 Identities=21% Similarity=0.354 Sum_probs=95.1
Q ss_pred CCCchhHHHHhhhhhh--------hcc--ccCCCCcceec--cCCCCCcccHHHH----------HHHHHHHHHHHHHHc
Q 048260 57 HLKPSADLLWRMQFLK--------EKK--FKQTIPQVKIK--VDGDEEEITYETA----------ATTALRRGVRFFSAL 114 (182)
Q Consensus 57 ~~~~s~dlL~rmQ~~~--------en~--~~~~ip~vk~~--id~~~~~it~e~v----------~~~al~rA~~fl~~~ 114 (182)
..+.+.|||++||+.. +|+ +...||+.++. +|++..|+|..++ +..+|+||++||++.
T Consensus 404 ~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~ 483 (635)
T TIGR01507 404 AMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKRE 483 (635)
T ss_pred HHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHc
Confidence 5567999999999832 443 55789998866 8999999998776 256899999999999
Q ss_pred ccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 115 QASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 115 Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|.+||+|+|.|+.+.++ |...|.+|...|. +..++.++++++||+++||+|||||+.
T Consensus 484 Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~-----~~~~~~i~rAv~wL~~~Q~~DGGWge~ 541 (635)
T TIGR01507 484 QEPDGSWFGRWGVNYLYGTGAVLSALKAVGI-----DTREPYIQKALAWLESHQNPDGGWGED 541 (635)
T ss_pred cCCCCCCccCCCCccccHHHHHHHHHHHcCC-----CcccHHHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999977665 6777788887774 223388999999999999999999964
No 11
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.57 E-value=6.8e-15 Score=140.36 Aligned_cols=115 Identities=23% Similarity=0.307 Sum_probs=92.7
Q ss_pred CCCchhHHHHhhhhh--------hhc--cccCCCCccee----ccCCCCCcccHHHH----------H-------HHHHH
Q 048260 57 HLKPSADLLWRMQFL--------KEK--KFKQTIPQVKI----KVDGDEEEITYETA----------A-------TTALR 105 (182)
Q Consensus 57 ~~~~s~dlL~rmQ~~--------~en--~~~~~ip~vk~----~id~~~~~it~e~v----------~-------~~al~ 105 (182)
....+.|+|++||+. +.+ .+...||+.++ -+|.+..++|.+++ + ..+++
T Consensus 401 ~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~ 480 (634)
T TIGR03463 401 RLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAIS 480 (634)
T ss_pred HHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHH
Confidence 456799999999983 222 26667888754 28888999998776 0 35799
Q ss_pred HHHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 106 RGVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
||++||.+.|.+||+|+|.|+.+.++ |...|.+|...|. ..+. +.++++++||+++||+|||||..
T Consensus 481 rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~---~~~~--~~i~rA~~~Ll~~Q~~DGgWg~~ 547 (634)
T TIGR03463 481 RGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGA---SPDD--MALQRAAAWLRSYQRADGGWGEV 547 (634)
T ss_pred HHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCC---CcCc--HHHHHHHHHHHHccCCCCCccCc
Confidence 99999999999999999999877664 7778889988884 2234 88999999999999999999973
No 12
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.54 E-value=2.2e-14 Score=136.57 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=91.4
Q ss_pred CCCCchhHHHHhhhhhh--------hcc--ccCCC-C---cceeccCCCCCcccHHHH------------HHHHHHHHHH
Q 048260 56 DHLKPSADLLWRMQFLK--------EKK--FKQTI-P---QVKIKVDGDEEEITYETA------------ATTALRRGVR 109 (182)
Q Consensus 56 ~~~~~s~dlL~rmQ~~~--------en~--~~~~i-p---~vk~~id~~~~~it~e~v------------~~~al~rA~~ 109 (182)
...+.+.|||++||+.. .++ +...| | +.++-+|++..++|..++ -.++++||++
T Consensus 388 ~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~ 467 (621)
T TIGR01787 388 DRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALE 467 (621)
T ss_pred HHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHH
Confidence 34456999999999832 111 33456 6 566667889999998766 0368999999
Q ss_pred HHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260 110 FFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 110 fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
||.+.|.+||+|+|.|+.++++ |...+.+|...|. ...+++.++++++||+++||+|||||+..
T Consensus 468 ~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~----~~~~~~~i~rA~~~L~~~Q~~DGGWge~~ 532 (621)
T TIGR01787 468 YLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGR----TYRNCPEVQKACDWLLSRQMPDGGWGEDC 532 (621)
T ss_pred HHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCC----cccCCHHHHHHHHHHHhhcCCCCCCCcCC
Confidence 9999999999999999877655 6666778888885 22223789999999999999999999753
No 13
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.44 E-value=1.9e-14 Score=105.89 Aligned_cols=68 Identities=28% Similarity=0.584 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|+++++||++.|.+||+|.+.++++++.+..++.++...|. .-.. +.++++++||+++|++||||+..
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~---~~~~--~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGD---AAVD--EAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp ----------------------------------------T---S-SS--BSSHHHHHHHHH---TTS--S-T
T ss_pred CccccccccccccccccccccccccccccccccccccccCC---CCcH--HHHHHHHHHHHHhcCCCCCCCCc
Confidence 68999999999999999999999888889999999888873 2223 67999999999999999999976
No 14
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.35 E-value=2.3e-12 Score=122.60 Aligned_cols=117 Identities=23% Similarity=0.303 Sum_probs=87.7
Q ss_pred CCCCchhHHHHhhhhhh--------hcc---ccCCCCcceec---cCCCCCcccHHHH----------H------HHHHH
Q 048260 56 DHLKPSADLLWRMQFLK--------EKK---FKQTIPQVKIK---VDGDEEEITYETA----------A------TTALR 105 (182)
Q Consensus 56 ~~~~~s~dlL~rmQ~~~--------en~---~~~~ip~vk~~---id~~~~~it~e~v----------~------~~al~ 105 (182)
...+.+.|||++||... .+. +...+|+-+.. +|++..++|..++ + .++++
T Consensus 400 ~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~ 479 (634)
T cd02892 400 ERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIR 479 (634)
T ss_pred HHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHH
Confidence 34567899999999731 111 23345554332 6778888888766 1 25899
Q ss_pred HHHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 106 RGVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
||++||.+.|.+||+|+|.|+.+.++ |...+.+|...|. . ...++.++++++||+++|++|||||+.
T Consensus 480 rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~---~-~~~~~~i~~a~~~L~s~Q~~DGgWge~ 547 (634)
T cd02892 480 RAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGE---D-YENSPYIRKACDFLLSKQNPDGGWGES 547 (634)
T ss_pred HHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCC---c-ccCcHHHHHHHHHHHhcCCCCCCCCCc
Confidence 99999999999999999999866555 6666778888884 1 022378999999999999999999974
No 15
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.21 E-value=1.2e-11 Score=118.57 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEG 179 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG 179 (182)
..+|..|++|+.+.|.+||+|+|.|+...|+ +...+=++...|. .=.+|+.++++|+||++.||+|||||+++.+
T Consensus 588 ~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGk----ty~nc~~irka~~Fll~~Q~~~GGWgEs~ls 663 (760)
T KOG0497|consen 588 EKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGK----TYENCEAIRKACDFLLSKQNPDGGWGESYLS 663 (760)
T ss_pred HHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcch----hhhccHHHHHHHHHHHhhhcccCCCcccccc
Confidence 7899999999999999999999999755444 4555668888886 2345799999999999999999999998865
No 16
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.14 E-value=5.9e-11 Score=111.36 Aligned_cols=156 Identities=18% Similarity=0.219 Sum_probs=115.8
Q ss_pred cCCccceeeeeecCC--CCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhh-------h---hccccCCCCcceec-
Q 048260 20 TNNYAGRQIWQFDPE--AGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFL-------K---EKKFKQTIPQVKIK- 86 (182)
Q Consensus 20 ~n~~~grq~wefdp~--~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~-------~---en~~~~~ip~vk~~- 86 (182)
.++..|+-.-+++-. .++..-++.|-+.+..+..-+|.. +.+++.-||+. . ...+...+|...++
T Consensus 245 ~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~~~~~~~--~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~ 322 (517)
T COG1657 245 RKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQSLPNFEL--GLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKA 322 (517)
T ss_pred cccCCCccceeecccCCCCchhhhHHHHHHHhhcchhhHHh--hhhHhhhcccccCceeeeccccccHHHhhCCHhhccc
Confidence 455556555555411 222334556767777766666665 99999999984 1 12266788887776
Q ss_pred -cCCCCCcccHHHH----------H---HHHHHHHHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCC
Q 048260 87 -VDGDEEEITYETA----------A---TTALRRGVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPA 151 (182)
Q Consensus 87 -id~~~~~it~e~v----------~---~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~ 151 (182)
++++.++.|.+.+ + ...+++|++||++.|.+||+|+|.|+.+.++ +.+..-+++..|. ...
T Consensus 323 ~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~----~~~ 398 (517)
T COG1657 323 MVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGE----TDE 398 (517)
T ss_pred cccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCc----ccc
Confidence 8899999888766 1 2459999999999999999999999877666 4455557777785 455
Q ss_pred CHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 152 ESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 152 ~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
++..++++|.+|+..|++||||+++.+..+
T Consensus 399 ~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~ 428 (517)
T COG1657 399 NEVLVRKLISWLVSKQMPDGGWGEAKEAIS 428 (517)
T ss_pred chHHHHHHHHHhhhccccCCCccccccccc
Confidence 668999999999999999999999987654
No 17
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.95 E-value=8.8e-10 Score=80.79 Aligned_cols=64 Identities=25% Similarity=0.482 Sum_probs=50.3
Q ss_pred HHHHHHcccCCCccccc-cCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHH--HHHHHhccCCCCCccCcCCC
Q 048260 108 VRFFSALQASDGHWPAE-NAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEI--LRYIHYHQNEDGGWGLHIEG 179 (182)
Q Consensus 108 ~~fl~~~Q~~DGhW~Ge-~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~--~ryL~~~QneDGGWGl~~eG 179 (182)
|+||++.|.+||.|.+. ...+...|...|++|..+|. . +.+.++ ++||.++|++||||+.+..+
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~----~----~~~~~~~~~~~L~~~q~~dGg~~~~~~~ 67 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGE----E----PDRDRAAAVEWLLSQQNPDGGWGSNPDG 67 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTS----H----HCHHHHHHHHHHHHHB-TTSGBBSSTTT
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCC----c----ccHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 68999999999999984 34555568899999999995 1 236667 99999999999999998743
No 18
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=98.87 E-value=2.6e-09 Score=92.53 Aligned_cols=69 Identities=30% Similarity=0.570 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc--------------CC
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQ--------------NE 169 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Q--------------ne 169 (182)
|++|++||.+.|.+||+|++.. .++..|+.++.+|..+|.. ++..+.++++++||.++| .+
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~-~~~~~Ta~~~~al~~~g~~----~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~ 75 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY-SQVWDTALALQALLEAGLA----PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLR 75 (348)
T ss_pred CchHHHHHHHhccCCCCccccC-CchHHHHHHHHHHHHcCCC----CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCC
Confidence 4789999999999999999887 8888899999999999852 233388999999999999 79
Q ss_pred CCCccCcC
Q 048260 170 DGGWGLHI 177 (182)
Q Consensus 170 DGGWGl~~ 177 (182)
||||+...
T Consensus 76 ~Ggw~y~~ 83 (348)
T cd02889 76 KGGWAFST 83 (348)
T ss_pred CCcCcccC
Confidence 99999643
No 19
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.83 E-value=2.9e-09 Score=78.08 Aligned_cols=66 Identities=27% Similarity=0.569 Sum_probs=47.7
Q ss_pred HHHH--HHHHHHcccCCCccccccC-C--CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCcc
Q 048260 104 LRRG--VRFFSALQASDGHWPAENA-G--PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 104 l~rA--~~fl~~~Q~~DGhW~Ge~~-g--~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWG 174 (182)
..++ ++||.+.|.+||.|..... . ++..+.-.+.++..+|. +...+..+++++||+++|++||||+
T Consensus 42 ~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~-----~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGR-----PDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT------GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCC-----CcccHHHHHHHHHHHHhcCCCCCCC
Confidence 4445 9999999999999988752 2 33346667778888884 1112578899999999999999997
No 20
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=98.64 E-value=9.4e-08 Score=82.82 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcccCCCccccccCCCee-ccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260 102 TALRRGVRFFSALQASDGHWPAENAGPLF-FLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 102 ~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f-~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl 175 (182)
++++++++||.+.|.+||.|++.++.... .++..+.+|+..|. .... +.++++++||.++|++||||+.
T Consensus 191 ~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~---~~~~--~~~~~~~~~L~~~Q~~dG~w~~ 260 (348)
T cd02889 191 PAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGE---DENS--PYVRKACDWLLSKQNPDGGWGE 260 (348)
T ss_pred HHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCC---CcCc--HHHHHHHHHHHHccCCCCCcCC
Confidence 68999999999999999999988764433 35666778888884 2334 7889999999999999999986
No 21
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.48 E-value=4.6e-07 Score=77.48 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcccCCCccccccCCC--eeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGP--LFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~--~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
.+++++|+.+.|.+||.|.+...+. +..+--.|.+++++|. ... +.++++++||.++|++||||+..+.+.|
T Consensus 100 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~----~~~--~~~~~~~~~l~~~Q~~dGGf~~~~~~es 173 (286)
T cd02890 100 REKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNI----LTD--IDKEKLIDYILSCQNYDGGFGGVPGAES 173 (286)
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCC----chh--hhHHHHHHHHHHhCCCCCCcCCCCCCCC
Confidence 4679999999999999998865432 3345567788899985 334 7799999999999999999998765543
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=98.45 E-value=5e-07 Score=73.44 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC---CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA---GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~---g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
...++++++||.+.|.+||.|..... ++++.|...|.+|..++... .++. +.++++++||.++|++||||+...
T Consensus 51 ~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-~~~~--~~~~~~~~~l~~~q~~dG~~~~~~ 127 (300)
T cd00688 51 DENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-AVDR--IDLARALNWLLSLQNEDGGFREDG 127 (300)
T ss_pred hHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-ccCH--HHHHHHHHHHHHccCCCCCeeeec
Confidence 67899999999999999999976542 36677888888888777421 1334 789999999999999999999765
Q ss_pred C
Q 048260 178 E 178 (182)
Q Consensus 178 e 178 (182)
.
T Consensus 128 ~ 128 (300)
T cd00688 128 P 128 (300)
T ss_pred C
Confidence 4
No 23
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.39 E-value=1.3e-06 Score=75.20 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC-----CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA-----GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~-----g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl 175 (182)
...|+.++..+++.|.+||+| +.|+ +...+|+-.|.+|.-.+.. ..++. ..++++++||.++|++||||+.
T Consensus 48 ~~~l~~g~~~~~~~q~~dGsf-~~w~~~~~~~~~wlTa~v~~~L~~a~~~-~~v~~--~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 48 LGFLRTGYQRQLTYKHSDGSY-SAFGESDKSGSTWLTAFVLKSFAQARPF-IYIDE--NVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHhccCCCCCe-ecccCCCCCcchhhHHHHHHHHHHHhcc-CCCCH--HHHHHHHHHHHHhcCCCCCCCC
Confidence 556899999999999999999 5563 3556788888777666531 12344 8899999999999999999996
Q ss_pred c
Q 048260 176 H 176 (182)
Q Consensus 176 ~ 176 (182)
.
T Consensus 124 ~ 124 (292)
T cd02897 124 V 124 (292)
T ss_pred C
Confidence 3
No 24
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.39 E-value=2.8e-07 Score=67.62 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQN 168 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn 168 (182)
.++|+||++||.+.|.+||.|...-..+.+.++.++.++.+.+. .+.++..+++++||.+||.
T Consensus 45 ~~ai~ka~~~l~~~Q~~dG~w~~~~~~~~~~t~~~~~~l~~~~~-----~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 45 DEAIKKAIDWLLSHQNPDGGWGYSGGEYVSMTAAAIAALALAGV-----YPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp SBSSHHHHHHHHH---TTS--S-TS--HHHHHHHHHHHHHHHHT-----T--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccC
Confidence 67899999999999999999987744456667888888877773 3355899999999999975
No 25
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.37 E-value=1.2e-06 Score=73.66 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCcccccc----CCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCC
Q 048260 96 YETAATTALRRGVRFFSALQASDGHWPAEN----AGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDG 171 (182)
Q Consensus 96 ~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~----~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDG 171 (182)
.+.+ ...|++|+++|.+.|.+||.| |-| .++.++|+-.+.+|.-.+... .+++ +.+.++++||..+|++||
T Consensus 44 ~~~~-~~~i~~~~~~l~~~Q~~dGgf-~~w~~~~~~~~~~Ta~~~~~L~~a~~~~-~v~~--~~i~ra~~~L~~~q~~~g 118 (282)
T cd02891 44 REKA-LEYIRKGYQRLLTYQRSDGSF-SAWGNSDSGSTWLTAYVVKFLSQARKYI-DVDE--NVLARALGWLVPQQKEDG 118 (282)
T ss_pred HHHH-HHHHHHHHHHHHhhcCCCCCc-cccCCCCCCchHHHHHHHHHHHHHHHcC-CCCH--HHHHHHHHHHHhccCCCC
Confidence 4567 899999999999999999988 444 457777887777776665433 2445 889999999999999999
Q ss_pred CccCcC
Q 048260 172 GWGLHI 177 (182)
Q Consensus 172 GWGl~~ 177 (182)
+|....
T Consensus 119 ~~~~~~ 124 (282)
T cd02891 119 SFRELG 124 (282)
T ss_pred CcCCCC
Confidence 998643
No 26
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.36 E-value=1.4e-06 Score=75.35 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCCC--eeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAGP--LFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIE 178 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g~--~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~e 178 (182)
+...+++++|+++.|.+||.|.+.-++. +-++-..|.++++++. .+. ..++++++||.++|++||||+...+
T Consensus 99 ~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~----~~~--i~~~~~~~~l~~~q~~dGGF~~~~~ 172 (287)
T cd02894 99 DENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGK----LDL--IDVDKAVDYLLSCYNFDGGFGCRPG 172 (287)
T ss_pred cHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCC----cch--hhHHHHHHHHHHcCCCCCCcCCCCC
Confidence 4458999999999999999998874443 3234444555677774 333 5689999999999999999998876
Q ss_pred CCC
Q 048260 179 GHS 181 (182)
Q Consensus 179 G~s 181 (182)
+.|
T Consensus 173 ~es 175 (287)
T cd02894 173 AES 175 (287)
T ss_pred CCC
Confidence 643
No 27
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.28 E-value=2.8e-06 Score=73.93 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCcccccc---CCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCc
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPAEN---AGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGW 173 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~---~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGW 173 (182)
+.+ ...|+.|+..+++.|.+||+| |-| .+...+|+-.+.+|...+... .+++ ..++++++||.++|++||+|
T Consensus 48 ~~~-~~~i~~g~~r~l~~q~~dGsf-~~w~~~~~s~wlTA~v~~~l~~a~~~~-~v~~--~~l~~a~~wL~~~Q~~dG~f 122 (297)
T cd02896 48 DEA-LKYIRQGYQRQLSYRKPDGSY-AAWKNRPSSTWLTAFVVKVFSLARKYI-PVDQ--NVICGSVNWLISNQKPDGSF 122 (297)
T ss_pred HHH-HHHHHHHHHHHHhccCCCCCc-cCCCCCCcchhhHHHHHHHHHHHHHcC-CCCH--HHHHHHHHHHHhcCCCCCee
Confidence 456 788999999999999999988 444 466777888777776666422 3455 88999999999999999999
Q ss_pred cCcC
Q 048260 174 GLHI 177 (182)
Q Consensus 174 Gl~~ 177 (182)
+...
T Consensus 123 ~e~~ 126 (297)
T cd02896 123 QEPS 126 (297)
T ss_pred CCCC
Confidence 9764
No 28
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=98.27 E-value=2.8e-06 Score=69.07 Aligned_cols=68 Identities=24% Similarity=0.408 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC---------CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA---------GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDG 171 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~---------g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDG 171 (182)
...++++++||.+.|.+||.|..... .....++..+.+|...|. ..+. +.+.++++||.++|++||
T Consensus 103 ~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~---~~~~--~~~~~~~~~l~~~q~~~g 177 (300)
T cd00688 103 RIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGK---LDPD--PLIEKALDYLLSCQNYDG 177 (300)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCC---CCCc--HHHHHHHHHHHHHhcCCC
Confidence 45799999999999999999986653 344557777888888885 2223 789999999999999999
Q ss_pred Cc
Q 048260 172 GW 173 (182)
Q Consensus 172 GW 173 (182)
||
T Consensus 178 ~~ 179 (300)
T cd00688 178 GF 179 (300)
T ss_pred Cc
Confidence 99
No 29
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.15 E-value=6.9e-06 Score=72.72 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcccCCCccccccCCCee--ccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLF--FLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f--~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
.+++++|+.+.|.+||.|.+.-.+..- ++--.+.++++++. ++. ..++++++||.++|+.||||+....+.|
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~----~~~--i~~~~~~~~i~scq~~dGGF~~~p~~es 179 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKR----LDK--INVEKAVDYIVSCKNFDGGFGCTPGGES 179 (316)
T ss_pred HHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCc----cch--hHHHHHHHHHHHhcCCCCCcCCCCCCCC
Confidence 456999999999999999985444332 23334556777775 333 4578899999999999999998876543
No 30
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.05 E-value=1.3e-05 Score=68.65 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcc-cCCCcccccc--CCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260 101 TTALRRGVRFFSALQ-ASDGHWPAEN--AGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q-~~DGhW~Ge~--~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
...++++++|+++.| .+||.|.+.. ..++..|-..|.++.++|.- ..+. ..++++++||.++|++||||+...
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~--~~~~~~~~~l~~~q~~dGgf~~~~ 121 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSR--IDREKIYKFLSSLQNPDGSFRGDL 121 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccch--hhHHHHHHHHHHhcCCCCCcccCC
Confidence 457899999999999 9999998753 34555677777888888841 1344 668899999999999999998754
Q ss_pred CC
Q 048260 178 EG 179 (182)
Q Consensus 178 eG 179 (182)
.+
T Consensus 122 ~~ 123 (286)
T cd02890 122 GG 123 (286)
T ss_pred CC
Confidence 33
No 31
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=97.99 E-value=1.5e-05 Score=70.24 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcccCCCcccccc-----CCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCC
Q 048260 104 LRRGVRFFSALQASDGHWPAEN-----AGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIE 178 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~-----~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~e 178 (182)
..+.++|+.+.|.+||.+.+.. +..+-++--.|..++++|.++. .. ..++++++||+++|+.|||++....
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~--~~--~d~~~li~~l~s~Q~~dGGF~~~~~ 189 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE--ED--IDKEKLIDYIKSSQSYDGGFGQGPG 189 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc--cc--ccHHHHHHHHHHccCCCCCccCCCC
Confidence 4678999999999999998876 4566666677778889985321 12 4578899999999999999998775
Q ss_pred CC
Q 048260 179 GH 180 (182)
Q Consensus 179 G~ 180 (182)
+.
T Consensus 190 ~E 191 (307)
T cd02895 190 LE 191 (307)
T ss_pred CC
Confidence 44
No 32
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.95 E-value=7.6e-06 Score=52.51 Aligned_cols=27 Identities=33% Similarity=0.618 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 155 HRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 155 ~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
.++++++||+++|++||||+..+++++
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~ 28 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGES 28 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSB
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCC
Confidence 478999999999999999999998865
No 33
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.4e-05 Score=67.44 Aligned_cols=71 Identities=24% Similarity=0.389 Sum_probs=57.8
Q ss_pred HHHHHHHHHcccCCCccccccCC--CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 105 RRGVRFFSALQASDGHWPAENAG--PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 105 ~rA~~fl~~~Q~~DGhW~Ge~~g--~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
.+-+.|+..+|.+||+..|+.-| +.=+.--.|.+|+++|.|+ . ..+.++++|+.++-|-|||+|..++..|
T Consensus 117 d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld----~--~nve~aVd~~~~CyN~DGGFG~~pGaES 189 (329)
T KOG0366|consen 117 DKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLD----T--INVEKAVDFVLSCYNFDGGFGCRPGAES 189 (329)
T ss_pred HHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHH----H--hhHHHHHHHHHhhcccCCCcCCCCCccc
Confidence 34589999999999999999433 4445666788999999844 4 5688999999999999999999886554
No 34
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=97.66 E-value=0.00011 Score=65.17 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcccCCCccccccC--CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCC
Q 048260 104 LRRGVRFFSALQASDGHWPAENA--GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~--g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~ 180 (182)
.+++++|+++.|.+||.+.+.-+ ..+..|-..|.+|.+++. ++. -.++++++||.+.|++||||+-...|.
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~----~~~--id~~~~~~~l~s~Q~~dGgF~~~~~ge 130 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDR----LDL--LDADKVASYVAGLQNEDGSFSGDEWGE 130 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhh----hhh--hhHHHHHHHHHHhcCCCCCccCCCCCC
Confidence 47889999999999999977542 344445555556666654 333 457789999999999999999876654
No 35
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=97.61 E-value=0.00017 Score=63.29 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcccCCCccccccC--CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCC
Q 048260 103 ALRRGVRFFSALQASDGHWPAENA--GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge~~--g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~ 180 (182)
..++.++|+.+.|.+||...+..+ +++..|=..|..+.++|..+ .++. -.++++++||.+.|++||||+....|.
T Consensus 48 ~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~-~~~~--id~~~~~~~l~~~q~~dGgf~~~~~~e 124 (299)
T cd02893 48 YADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEE-AYDV--IDREALYKFLLSLKQPDGSFRMHVGGE 124 (299)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCch-hhhH--hhHHHHHHHHHHhcCCCCCeeCCCCCC
Confidence 457889999999999998887643 45555666666777777411 1233 457789999999999999999886553
No 36
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.50 E-value=0.00032 Score=65.36 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=83.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhCcCCCCc--hhHHHHhhhhhhhcc----ccCCCCcceeccCCCCCcccHHHH------
Q 048260 32 DPEAGSDEERAQVEAARLHFYNNRDHLKP--SADLLWRMQFLKEKK----FKQTIPQVKIKVDGDEEEITYETA------ 99 (182)
Q Consensus 32 dp~~gt~ee~a~ve~~r~~f~~~r~~~~~--s~dlL~rmQ~~~en~----~~~~ip~vk~~id~~~~~it~e~v------ 99 (182)
+.-.-|.+|+..||..=.++++. +.... ..+.++.+..++--. ....+|..-..+|.+..-+++=.+
T Consensus 7 ~~~t~t~~~q~~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~H~~yl~~~l~~lp~~~~~lDa~r~~~~Yw~L~sL~lL 85 (439)
T PLN02710 7 PRLTVTQREQWKVEAKVFDIYRS-FASAPPNAQSVMLELWREKHLEYLTRGLRQLGPSFSVLDANRPWLCYWILHSIALL 85 (439)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHH-HhccccccccccccccHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHHHHHHh
Confidence 33467899999999887776532 21111 112222222222111 112355543322222222222111
Q ss_pred ----HHHHHHHHHHHHHHcccCCCccccccC--CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCc
Q 048260 100 ----ATTALRRGVRFFSALQASDGHWPAENA--GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGW 173 (182)
Q Consensus 100 ----~~~al~rA~~fl~~~Q~~DGhW~Ge~~--g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGW 173 (182)
+..--++.++|+.+.|.+||.+.|--+ +++-.|=..|.+|.++|..+. ++. -.+.++++||.+.|++|||.
T Consensus 86 g~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~-l~~--Idr~~l~~fl~s~q~~dGgF 162 (439)
T PLN02710 86 GESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERA-LSS--INREKLYTFLLRMKDPSGGF 162 (439)
T ss_pred CCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchh-hcc--cCHHHHHHHHHHcCCCCCCc
Confidence 122346789999999999998876542 233334445677888884111 222 34788999999999999999
Q ss_pred cCcCCCCC
Q 048260 174 GLHIEGHS 181 (182)
Q Consensus 174 Gl~~eG~s 181 (182)
+.+..|.+
T Consensus 163 ~~~~~gE~ 170 (439)
T PLN02710 163 RMHDGGEM 170 (439)
T ss_pred ccCCCCCC
Confidence 99887653
No 37
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=97.44 E-value=0.00042 Score=60.33 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceec----cC--CCCCcccHHHH-----H-----------
Q 048260 43 QVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIK----VD--GDEEEITYETA-----A----------- 100 (182)
Q Consensus 43 ~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~----id--~~~~~it~e~v-----~----------- 100 (182)
....|++.-.-+-...+.+.+||..+|.. +-.|....|...-. ++ +++..+|+-++ .
T Consensus 90 ~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~-dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~ 168 (297)
T cd02896 90 VFSLARKYIPVDQNVICGSVNWLISNQKP-DGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNL 168 (297)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-CCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhh
Confidence 34445443222223445689999999862 23366666654321 11 13445566544 0
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
..+|+||++||.+.|.+ ..+.+.++.+..+|...|. +.+.+++++|.++|+.||||+..
T Consensus 169 ~~~i~rA~~yL~~~~~~--------~~~~Y~~Al~ayALal~~~---------~~~~~a~~~L~~~~~~d~~~~~~ 227 (297)
T cd02896 169 DQSIRKAISYLENQLPN--------LQRPYALAITAYALALADS---------PLSHAANRKLLSLAKRDGNGWYW 227 (297)
T ss_pred HHHHHHHHHHHHHhccc--------CCChHHHHHHHHHHHHcCC---------hhhHHHHHHHHHHhhhCCCccee
Confidence 34889999999998865 1233335555556666663 56889999999999999999854
No 38
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=97.41 E-value=0.00056 Score=60.04 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHHHcccCCCccccccCC--CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCC
Q 048260 105 RRGVRFFSALQASDGHWPAENAG--PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEG 179 (182)
Q Consensus 105 ~rA~~fl~~~Q~~DGhW~Ge~~g--~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG 179 (182)
++.++|+.+.|.+||.|...-++ ++=.+=-.|..+++++. +++ ..+.++++||.++|+.|||.+-.+..
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~----~~~--~~~~~~~~~l~~cQ~~dGGF~~~p~~ 171 (299)
T cd02893 101 EALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNI----LTD--ELFEGVAEYILSCQTYEGGFGGVPGN 171 (299)
T ss_pred HHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCC----Cch--hhHHHHHHHHHHcCCCCCCcCCCCCC
Confidence 45899999999999999876433 22222234455677784 455 67889999999999999999865543
No 39
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00054 Score=61.67 Aligned_cols=68 Identities=26% Similarity=0.392 Sum_probs=52.3
Q ss_pred HHHHHHHHcccCCCccccccCCCee--ccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCC
Q 048260 106 RGVRFFSALQASDGHWPAENAGPLF--FLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEG 179 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~g~~f--~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG 179 (182)
+-..|++.+|.||||..++..|-.= +.-..|-.++++|. ++. +....+++||.++||=|||.|+++.+
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~----~~~--~~~e~~vdyl~kCqnyeGGFg~~p~a 199 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD----LDK--ELFEGAVDYLKKCQNYEGGFGLCPYA 199 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh----cch--hhhHHHHHHHHHhhccCCcccCCCch
Confidence 5789999999999999988764321 11122234566774 667 88889999999999999999999876
No 40
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=97.30 E-value=0.00066 Score=58.42 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcccCCCccccc-----------cCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAE-----------NAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQN 168 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge-----------~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn 168 (182)
..+|+||++||.+.|.+||+|... ......+|+-.+++|.-.|. +..++.++++++||++++.
T Consensus 101 ~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~-----~~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 101 ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGL-----PSERPVVEKALSCLEAALD 174 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCC-----ccccHHHHHHHHHHHHhcc
Confidence 679999999999999999999631 11223456777777776774 1122556667777766554
No 41
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=97.28 E-value=0.0007 Score=58.68 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcccCCCccccccCC--CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260 103 ALRRGVRFFSALQASDGHWPAENAG--PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge~~g--~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
-++++++||.+.|.+||.|-++-++ ..-+|.-.|.+|.++|.+ +. ....++++||.++|++|||.+-.+
T Consensus 149 ~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~----~~--~~~~~~~~~L~~~q~~~GGf~gr~ 219 (287)
T cd02894 149 DVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSL----DL--IDRDRLGWWLCERQLPSGGLNGRP 219 (287)
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcc----cc--cCHHHHHHHHHHhCCCCCCcCCCC
Confidence 5799999999999999999887543 345577778889999963 33 447889999999999999986433
No 42
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=97.22 E-value=0.0008 Score=59.33 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=50.1
Q ss_pred HHHHHHHHHcc----cCCCccccccC------------CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccC
Q 048260 105 RRGVRFFSALQ----ASDGHWPAENA------------GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQN 168 (182)
Q Consensus 105 ~rA~~fl~~~Q----~~DGhW~Ge~~------------g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn 168 (182)
++.++|+.+.| .+||.+.|-.+ +++..|=-.|..+.++|. .++. ..++++++||.+.|+
T Consensus 52 ~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~---~~~~--idr~~i~~~l~~~q~ 126 (307)
T cd02895 52 DDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGD---DLSR--VDRKAILNFLSKLQL 126 (307)
T ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCC---chhh--hhHHHHHHHHHHhCC
Confidence 56699999999 99999887553 333334445556677763 2222 457899999999999
Q ss_pred CCCCccCcC
Q 048260 169 EDGGWGLHI 177 (182)
Q Consensus 169 eDGGWGl~~ 177 (182)
+|||++...
T Consensus 127 ~dGgF~~~~ 135 (307)
T cd02895 127 PDGSFGSVL 135 (307)
T ss_pred CCCCccCCc
Confidence 999999876
No 43
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.17 E-value=0.0014 Score=61.10 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcccCCCccccccCCC--eeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCC
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGP--LFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEG 179 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~--~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG 179 (182)
..+.++|+.+.|.+||...+.-++. +-++--.|..++++|. ++. ....++++||.++|+.|||.+-.+..
T Consensus 145 r~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~----l~~--~~~e~~~~~I~scQ~~dGGF~g~P~~ 216 (439)
T PLN02710 145 REKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNI----LDD--ELVKGVGDYILSCQTYEGGIGGEPGA 216 (439)
T ss_pred HHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCc----Cch--hhHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3567999999999999998776553 3333334455677885 555 67889999999999999999966544
No 44
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.92 E-value=0.0033 Score=55.86 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC------CCeec----cHHHHHHHHHh--cCCC-CCCCC-----CHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA------GPLFF----LPPLVMCLYIT--GHLN-TVFPA-----ESEHRKEILRY 162 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~------g~~f~----t~~~V~~l~~~--G~l~-~~~~~-----~~e~~~e~~ry 162 (182)
.+++.||++||++.|-++|-||--+. ..+++ +...+.+|.-+ +.-+ ..++. -.+.+.+++.|
T Consensus 66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ 145 (290)
T TIGR02474 66 RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIEC 145 (290)
T ss_pred HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999996543 22222 23333333221 1100 01221 12457788999
Q ss_pred HHhccCCCC----CccCcC
Q 048260 163 IHYHQNEDG----GWGLHI 177 (182)
Q Consensus 163 L~~~QneDG----GWGl~~ 177 (182)
|+..|-++| +||.-+
T Consensus 146 ILktQ~~~gg~~t~Wg~Qy 164 (290)
T TIGR02474 146 ILKTQVVQNGKLTVWCQQH 164 (290)
T ss_pred HHHhhcccCCcCCchhhcc
Confidence 999998877 666544
No 45
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=96.68 E-value=0.0025 Score=54.18 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=50.0
Q ss_pred HHHHHHHcccCCCccc---cccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 107 GVRFFSALQASDGHWP---AENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 107 A~~fl~~~Q~~DGhW~---Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|..-+++-|.+||+|. .+..+.+.+|+-.|-.+.-.... ..+++ ..+.++++||.++|++||.|.+.
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~-i~vd~--~~i~~a~~wL~~~Q~~dG~F~e~ 71 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKY-IFVDE--NVICRAVKWLISQQQPDGSFEED 71 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTT-S-CEH--HHHHHHHHHHHHHBETTSEB--S
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHh-hcCCH--HHHHHHHHHHHHhhcCCCccccC
Confidence 4455677889999654 45678888999888777777654 44566 89999999999999999999753
No 46
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=96.68 E-value=0.0044 Score=39.55 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcccCCCccccccCCCeec--cHHHHHHHHHhc
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLFF--LPPLVMCLYITG 143 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f~--t~~~V~~l~~~G 143 (182)
++++++|+++.|.+||.|.+..+.+... +--.+.+|.++|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 6789999999999999999998876443 444455666554
No 47
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.19 E-value=0.028 Score=50.04 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=57.6
Q ss_pred eecCCCCCHHHHHHHHHHHHHHhh--CcCCCCchhHHHHhhhhhh---------hccccCCCCcceec----------cC
Q 048260 30 QFDPEAGSDEERAQVEAARLHFYN--NRDHLKPSADLLWRMQFLK---------EKKFKQTIPQVKIK----------VD 88 (182)
Q Consensus 30 efdp~~gt~ee~a~ve~~r~~f~~--~r~~~~~s~dlL~rmQ~~~---------en~~~~~ip~vk~~----------id 88 (182)
.||-+ +|-.|...+-++=+...+ .|-....+.|+|+.||+.. .+.....|++.|-- |-
T Consensus 40 TiDN~-aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~ 118 (290)
T TIGR02474 40 TIDNG-ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIA 118 (290)
T ss_pred cccCc-cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHH
Confidence 56755 555555444444333222 2233457899999999952 11233344443321 00
Q ss_pred ---CCCCccc---HHHHHHHHHHHHHHHHHHcccCCCccccccCCC
Q 048260 89 ---GDEEEIT---YETAATTALRRGVRFFSALQASDGHWPAENAGP 128 (182)
Q Consensus 89 ---~~~~~it---~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~ 128 (182)
++-+-+. ...+ ..++.||++|+++.|.++|.|.+.|+..
T Consensus 119 ~~~~~~~~~~~~~~~r~-~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Q 163 (290)
T TIGR02474 119 NGKDPFDVFPDSTRTRA-KTAVTKGIECILKTQVVQNGKLTVWCQQ 163 (290)
T ss_pred hccCCcccccHHHHHHH-HHHHHHHHHHHHHhhcccCCcCCchhhc
Confidence 1101111 2355 8899999999999999999999998854
No 48
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.017 Score=52.07 Aligned_cols=68 Identities=32% Similarity=0.546 Sum_probs=46.2
Q ss_pred HHHHHHcccCCCccccccCC---CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 108 VRFFSALQASDGHWPAENAG---PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 108 ~~fl~~~Q~~DGhW~Ge~~g---~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
++++...|.+|||+..--.| +|=+.--.+.-+|+++. .+- -..++++.||++.|+=|||.|.+.+|.|
T Consensus 131 l~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~----~s~--iD~ek~~~yI~~~q~YdgGfg~~pg~Es 201 (347)
T KOG0367|consen 131 LRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDF----WSG--IDKEKLIGYIRSSQRYDGGFGQHPGGES 201 (347)
T ss_pred HHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcc----ccc--cCHHHHHHHHHHhhccccccccCCCCCC
Confidence 57889999999999865443 22222222233455552 222 2367889999999999999999996544
No 49
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=95.72 E-value=0.032 Score=46.87 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCC-----------CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAG-----------PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQN 168 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g-----------~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn 168 (182)
...++||++||...|.+||+|...... ...+++-.+++|...|. ... +...++++||+++..
T Consensus 100 ~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~----~~~--~~~~~a~~~L~~~~~ 172 (282)
T cd02891 100 ENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSLTAYVLIALAEAGK----ACD--ASIEKALAYLETQLD 172 (282)
T ss_pred HHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcchHHHHHHHHHHhcc----cch--HHHHHHHHHHHHhcc
Confidence 456999999999999999999765432 12346666667777774 223 678999999998875
No 50
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.017 Score=53.08 Aligned_cols=79 Identities=16% Similarity=0.357 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHcccCCCccccccCCCeec--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcC
Q 048260 100 ATTALRRGVRFFSALQASDGHWPAENAGPLFF--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 100 ~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
++...+++++||...|.|.|-..|--|--.-+ |-..|.+|.++|.-++. +. -.+.++..||++..++|||+-+|.
T Consensus 118 dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~-~~--InR~~l~~fL~slK~~dGgFrmh~ 194 (423)
T KOG0365|consen 118 DDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAY-SS--INREKLYQFLFSLKDPDGGFRMHV 194 (423)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHH-HH--hhHHHHHHHHHHhcCCCCCeEeec
Confidence 57889999999999999999876554422222 44567888888853321 22 347889999999999999999999
Q ss_pred CCCC
Q 048260 178 EGHS 181 (182)
Q Consensus 178 eG~s 181 (182)
+|..
T Consensus 195 ~GE~ 198 (423)
T KOG0365|consen 195 EGEV 198 (423)
T ss_pred CCcc
Confidence 9864
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=94.63 E-value=0.021 Score=48.46 Aligned_cols=66 Identities=18% Similarity=0.352 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC-----------CCeeccHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHhc
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA-----------GPLFFLPPLVMCLYITGHLNT-VFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~-----------g~~f~t~~~V~~l~~~G~l~~-~~~~~~e~~~e~~ryL~~~ 166 (182)
...|.++++||.+.|.+||+|...-. ....+|+-++++|.-.+.+.. ..+.....+.++++||.++
T Consensus 48 ~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 48 ENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH 125 (246)
T ss_dssp HHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Confidence 56789999999999999999975422 234567778888887773211 0122236788999999886
No 52
>PRK01631 hypothetical protein; Provisional
Probab=89.82 E-value=0.57 Score=34.18 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHHHHH
Q 048260 35 AGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATT 102 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v~~~ 102 (182)
.-|+||.++-..+|++|-.+ .|-| |...+-.++| +|+++.|||++.+ ..
T Consensus 19 gLT~eE~~Eq~~LR~eYl~~-----------fR~~------~~~~L~~i~i-vD~~G~dvTP~Kl-k~ 67 (76)
T PRK01631 19 GLTVDEKQEQQMLRQNYTQT-----------FRGS------LDSILLNTKI-VDQNGLNVTPAAL-QD 67 (76)
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------HHHH------HHHHhcCcee-ECCCCCcCCHHHH-HH
Confidence 35999999999999999775 2322 3344556666 8999999999988 44
No 53
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=89.78 E-value=1.3 Score=39.59 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcccCCCcccccc------CCCeec----cHHHHHHHHHh--cCCC-CCCCC-----CHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSALQASDGHWPAEN------AGPLFF----LPPLVMCLYIT--GHLN-TVFPA-----ESEHRKEILRY 162 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~------~g~~f~----t~~~V~~l~~~--G~l~-~~~~~-----~~e~~~e~~ry 162 (182)
.+|+.||++||++.|-+.|-||-.| ..-+++ |...+..|.-+ |.-+ ..+++ -.....+++.+
T Consensus 61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~c 140 (289)
T PF09492_consen 61 REAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDC 140 (289)
T ss_dssp HHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999874 344444 44444433332 2100 01222 01335666889
Q ss_pred HHhccC----CCCCccCcC
Q 048260 163 IHYHQN----EDGGWGLHI 177 (182)
Q Consensus 163 L~~~Qn----eDGGWGl~~ 177 (182)
|+..|- +=-+|+--+
T Consensus 141 iL~tQi~~~g~~t~W~qQh 159 (289)
T PF09492_consen 141 ILKTQIRQNGKLTAWCQQH 159 (289)
T ss_dssp HHHHS-EETTEE----SEE
T ss_pred HHHHHcccCCCCCchhhcc
Confidence 999997 334677543
No 54
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=89.69 E-value=0.66 Score=42.05 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHhccCCCCCcc
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPA-ESEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~-~~e~~~e~~ryL~~~QneDGGWG 174 (182)
..+ ..+|++.++.+++.|.+||+. ||.|.|+..+-+|.+++. ... ..-...++.+.|+.+. +||.++
T Consensus 211 ~~i-~~~i~~~~~kIl~~q~~~G~~-----GNiySTglAmQAL~~~~~----~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 211 RRI-QQAIRSLVEKILSQQKPNGLF-----GNIYSTGLAMQALSVSPS----PPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHH-HHHHHHHHHHHHHTB-TTS-B-----SSTTTHHHHHHHHTT-SS-----SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred HHH-HHHHHHHHHHHHHhcCCCCcc-----cchhhHHHHHHHHhcCCC----CCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 466 889999999999999999998 799999999999999985 222 1134778889998865 478765
No 55
>PLN02592 ent-copalyl diphosphate synthase
Probab=89.26 E-value=0.34 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhccCCCCCccCc
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|..-+.++||++.|.+|||||..
T Consensus 115 p~FP~~~~wIl~nQ~~DGsWG~~ 137 (800)
T PLN02592 115 PQFPSSLQWIANNQLSDGSWGDA 137 (800)
T ss_pred CCCHHHHHHHHHccCCCCCCCCC
Confidence 56778999999999999999985
No 56
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=88.72 E-value=0.31 Score=34.49 Aligned_cols=46 Identities=30% Similarity=0.481 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHH
Q 048260 36 GSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETA 99 (182)
Q Consensus 36 gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v 99 (182)
-|+||.++-+++|++|-.+ | | .+|...+-.++| +|+++.|||++.+
T Consensus 19 LT~eE~~Eq~~LR~eYl~~-f----------R------~~~~~~L~~i~i-vD~~G~dVTP~Kl 64 (65)
T PF05979_consen 19 LTEEEKAEQAELRQEYLQN-F----------R------GNFRSQLENIKI-VDPDGNDVTPEKL 64 (65)
T ss_dssp --HHHHHHHHHHHHHHHHT-T----------H------HHHHHCSSTT----------------
T ss_pred CCHHHHHHHHHHHHHHHHH-H----------H------HHHHHHhcceeE-ECCCCCCCChhhc
Confidence 4899999999999998663 1 1 234455666777 8999999998765
No 57
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.62 E-value=0.64 Score=33.90 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHH
Q 048260 35 AGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETA 99 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v 99 (182)
.-|.||..+-+.+|++|-+- .| ..+...|-.+++ |||.+.|||++.+
T Consensus 20 gLTeeEk~eQ~~LR~eYl~~-----------fr------~~vk~~l~~iki-iDp~GnDVTP~Kl 66 (77)
T COG4224 20 GLTEEEKKEQAKLRREYLES-----------FR------GQVKNQLENIKI-IDPKGNDVTPEKL 66 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------HH------HHHHHhhcceee-eCCCCCCCChHHH
Confidence 35899999999999998651 11 124455666777 9999999999988
No 58
>PRK02539 hypothetical protein; Provisional
Probab=88.25 E-value=0.67 Score=34.50 Aligned_cols=47 Identities=23% Similarity=0.397 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHH
Q 048260 35 AGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETA 99 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v 99 (182)
.-|+||.++-+++|++|-.+ .|- +|...+-.++| +|+++.+||++.+
T Consensus 20 gLT~eEk~Eq~~LR~eYl~~-----------fR~------~~~~~L~~i~i-vD~~G~dVTP~Kl 66 (85)
T PRK02539 20 GLTGEEKVEQAKLREEYIEG-----------YRR------SVRHHIEGIKI-VDEEGNDVTPEKL 66 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------HHH------HHHHHhccceE-ECCCCCCCCHHHH
Confidence 35999999999999998652 122 23345566677 7999999999988
No 59
>PRK01546 hypothetical protein; Provisional
Probab=87.80 E-value=0.74 Score=33.81 Aligned_cols=47 Identities=15% Similarity=0.351 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHH
Q 048260 35 AGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETA 99 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v 99 (182)
.-|+||.++-.++|++|-++ .| .+|...+-.++| +|+++.|||++.+
T Consensus 21 gLT~eEk~Eq~~LR~eYl~~-----------fR------~~~~~~L~~i~v-vD~~G~dVTP~Kl 67 (79)
T PRK01546 21 GLTEEEQRERQSLREQYLKG-----------FR------QNMLNELKGIKV-VNEQGTDVTPAKL 67 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------HH------HHHHHHhccceE-ECCCCCCCCHHHH
Confidence 35999999999999998652 11 223345566677 7999999999988
No 60
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=1.3 Score=40.10 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=47.2
Q ss_pred HHHHHHHHHcccCCCccccccCCCe--eccHHHHHHHHHhcCC--CCCCCCCHHHHHHHHHHHHhccCCCCCcc
Q 048260 105 RRGVRFFSALQASDGHWPAENAGPL--FFLPPLVMCLYITGHL--NTVFPAESEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 105 ~rA~~fl~~~Q~~DGhW~Ge~~g~~--f~t~~~V~~l~~~G~l--~~~~~~~~e~~~e~~ryL~~~QneDGGWG 174 (182)
.+++.|+.+.|.=||-.--..++-. =.|--.|..|..+|.| +..... ....+++||+..+|-.+||.-
T Consensus 177 ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~--~~~erlirWli~RQ~~sgGfq 248 (347)
T KOG0367|consen 177 EKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNT--SKVERLIRWLIQRQVSSGGFQ 248 (347)
T ss_pred HHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccc--cCHHHHHHHHHHHhhccCCcC
Confidence 5679999999999998765442111 1133345566677766 455444 347899999999999999974
No 61
>PLN02279 ent-kaur-16-ene synthase
Probab=85.88 E-value=0.57 Score=46.89 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCCCCCccCc
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|..-+.++||++.|.+|||||+.
T Consensus 73 p~Fp~~~~wil~nQ~~dGsWg~~ 95 (784)
T PLN02279 73 PLFPECVKWLLENQLEDGSWGLP 95 (784)
T ss_pred CCChHHHHHHHhcCCCCCCCCCC
Confidence 66778999999999999999986
No 62
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.55 E-value=0.45 Score=41.60 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccCCCCCccCcCC-CCCC
Q 048260 156 RKEILRYIHYHQNEDGGWGLHIE-GHST 182 (182)
Q Consensus 156 ~~e~~ryL~~~QneDGGWGl~~e-G~st 182 (182)
+...+|||.+.||+|||+-=.++ |-||
T Consensus 230 i~~~~rFI~slqN~nGGFRRS~~~GISt 257 (274)
T COG1689 230 ISDHIRFIRSLQNQNGGFRRSYELGIST 257 (274)
T ss_pred chHHHHHHHHhhcCCCCeeeeEeccccc
Confidence 45568999999999999985553 5554
No 63
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.45 E-value=1.1 Score=40.66 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcccCCCccccccCCCeec--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCC
Q 048260 103 ALRRGVRFFSALQASDGHWPAENAGPLFF--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEG 179 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG 179 (182)
.-+|.+-+++..+.++|-.++--+-..=+ |=-.|..|++.+.++ +++. -.++.+.+||...|||||+.----+|
T Consensus 76 ~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~-~~~~--idr~~l~~fi~~lk~pdGsF~~~~~g 151 (342)
T COG5029 76 DKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLD-VLSR--IDRDSLASFISGLKNPDGSFRSDLEG 151 (342)
T ss_pred hhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhcccc-ccch--hhHHHHHHHHHhccCCCCceecccCC
Confidence 44567889999999999888776533222 444556667776542 3344 55778999999999999987544443
No 64
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=2.9 Score=37.52 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=42.4
Q ss_pred HHHHHHHHcccCCCccccccC--CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCc
Q 048260 106 RGVRFFSALQASDGHWPAENA--GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGW 173 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~--g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGW 173 (182)
+-+.|+.+-|.+||-..+--+ ..+++|=..|--|++... ++. -.+.+++.|+..-|||||+.
T Consensus 70 eiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~yds----i~~--~d~d~v~~yi~gLq~edGsF 133 (329)
T KOG0366|consen 70 EIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDS----INV--LDRDKVASYIKGLQQEDGSF 133 (329)
T ss_pred HHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcc----ccc--ccHHHHHHHHHhhcCcCCcc
Confidence 338999999999998876644 233344444444454443 222 33667899999999999974
No 65
>PLN02592 ent-copalyl diphosphate synthase
Probab=81.61 E-value=2.2 Score=42.97 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcccCCCccccccCC---Ce-eccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 048260 104 LRRGVRFFSALQASDGHWPAENAG---PL-FFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY 165 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g---~~-f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~ 165 (182)
.-.+++|++..|.+||+|...... +. .-|-..|+||.--. ..+ .++.++++||..
T Consensus 117 FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~-----~~~--~~i~rGl~fi~~ 175 (800)
T PLN02592 117 FPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWN-----LHP--EKCEKGMSFFRE 175 (800)
T ss_pred CHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhh-----ccH--HHHHHHHHHHHH
Confidence 446789999999999999653210 11 11555666765544 223 678899999875
No 66
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=74.60 E-value=7.3 Score=34.04 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCCCe---ec----cHHHHHHHH---HhcCCCCCCCCCHHHHHHHHHHHHhc-cCC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAGPL---FF----LPPLVMCLY---ITGHLNTVFPAESEHRKEILRYIHYH-QNE 169 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~---f~----t~~~V~~l~---~~G~l~~~~~~~~e~~~e~~ryL~~~-Qne 169 (182)
...+++-++++.+.|.+||.|+-.+--|- +. ++.+..+|. -.|.++.. ...+...++.+.|.++ -++
T Consensus 214 ~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~--~y~~~a~~a~~~l~~~~~~~ 291 (336)
T PF07470_consen 214 LEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPE--EYRPAAEKALEALLSNAIDP 291 (336)
T ss_dssp HHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHH--HHHHHHHHHHHHHHHCEB-T
T ss_pred HHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHHHHhCccCC
Confidence 56677888889999999999987766554 33 222333332 13532111 1124567778899998 777
Q ss_pred CCC
Q 048260 170 DGG 172 (182)
Q Consensus 170 DGG 172 (182)
||-
T Consensus 292 dG~ 294 (336)
T PF07470_consen 292 DGK 294 (336)
T ss_dssp TSS
T ss_pred CCC
Confidence 876
No 67
>PLN02279 ent-kaur-16-ene synthase
Probab=71.86 E-value=6.2 Score=39.71 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcccCCCccccccCCC-----eec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 048260 103 ALRRGVRFFSALQASDGHWPAENAGP-----LFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY 165 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge~~g~-----~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~ 165 (182)
-.-.+++|++..|.+||+|...-..+ .++ |-..|+||.--+. .+ .++.+.+.||..
T Consensus 74 ~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~-----~~--~~~~~gl~fi~~ 135 (784)
T PLN02279 74 LFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGV-----GE--EQINKGLQFIEL 135 (784)
T ss_pred CChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhc-----Cc--ccchhhHHHHHH
Confidence 34556899999999999995432222 112 5556677765552 23 566777777763
No 68
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=71.67 E-value=3.3 Score=36.94 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhccCCCCCccCcC
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLHI 177 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~~ 177 (182)
+...++++||++.|.+.|||.-++
T Consensus 62 ~A~~kgl~ylL~aQypnGGWPQ~y 85 (289)
T PF09492_consen 62 EAFLKGLDYLLKAQYPNGGWPQFY 85 (289)
T ss_dssp HHHHHHHHHHHHHS-TTS--BSEC
T ss_pred HHHHHHHHHHHHhhCCCCCCCccC
Confidence 557788999999999999999654
No 69
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=69.77 E-value=4.5 Score=38.88 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCCchhHHHHhhhhhhhcc------ccCCCCcceeccCCCCCcccHHH-HHHHHHHHHHHHHHHcccCCCccccccCCC
Q 048260 56 DHLKPSADLLWRMQFLKEKK------FKQTIPQVKIKVDGDEEEITYET-AATTALRRGVRFFSALQASDGHWPAENAGP 128 (182)
Q Consensus 56 ~~~~~s~dlL~rmQ~~~en~------~~~~ip~vk~~id~~~~~it~e~-v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~ 128 (182)
-......++|+.+|..+-.- ...+.|..+.+ --+.+++.. - ...++.++.++...|.+||-|..-+..+
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~---~l~~~g~~~~~-~~~v~~~~~~l~~~~~~~~Gw~e~~~~~ 427 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALS---ALALVGETDEN-EVLVRKLISWLVSKQMPDGGWGEAKEAI 427 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhh---hhhccCccccc-hHHHHHHHHHhhhccccCCCcccccccc
Confidence 44567889999999754322 23345555552 222232222 2 4589999999999999999997665532
Q ss_pred ---ee-------ccH-HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 129 ---LF-------FLP-PLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 129 ---~f-------~t~-~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
++ +.. .++..-.+.- ..++.+.++..++.+.+.|.+||.|+..
T Consensus 428 ~~~~~~~t~~sl~~~~~wal~~~~~a-----~~~~~~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 428 SDPVYTGTESSLLVQTNWALIALLTA-----LEPNQEAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred cccccccccchhhcchhHHHHHHHHh-----cccchhhhcccccccccCcCCCCccccc
Confidence 11 111 1111112221 1123366888999999999999999854
No 70
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=15 Score=34.16 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=46.7
Q ss_pred HHHHHHHcccCCCccccccCCCeeccHHH--HHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 107 GVRFFSALQASDGHWPAENAGPLFFLPPL--VMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 107 A~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~--V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
-..||.++..+||.+.=-.+|-+=.-+.| |....+++. +.+ |..+-...||.++|+=.||.|-.
T Consensus 176 l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni----~~d--eL~eG~~~wi~~CQtyEGG~GG~ 241 (423)
T KOG0365|consen 176 LYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNI----PMD--ELFEGTLDWIASCQTYEGGFGGE 241 (423)
T ss_pred HHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCC----CcH--HHHHHHHHHHHhcccccCCcCCC
Confidence 46899999999999987666655443333 222344562 445 78888899999999999999843
No 71
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=66.61 E-value=25 Score=33.80 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcccCC-CccccccC--------CCeec-----cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 101 TTALRRGVRFFSALQASD-GHWPAENA--------GPLFF-----LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~D-GhW~Ge~~--------g~~f~-----t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
...++|++--|+.++... |.-.+... +.+-+ .+..+++|-.+|. . +..++.++||.+.
T Consensus 255 ~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~------~--~~a~~~l~~l~~~ 326 (616)
T TIGR01577 255 YSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGY------H--DRVDRFFRWAMQT 326 (616)
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCC------H--HHHHHHHHHHHHh
Confidence 567888887788888766 75333221 12222 3456677777884 3 6788999999999
Q ss_pred cCCCCCc
Q 048260 167 QNEDGGW 173 (182)
Q Consensus 167 QneDGGW 173 (182)
|.+||+|
T Consensus 327 q~~~G~~ 333 (616)
T TIGR01577 327 QSRDGSW 333 (616)
T ss_pred hCcCCCc
Confidence 9999998
No 72
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.91 E-value=15 Score=32.40 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcccCCCccccccCCCeec--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-ccCCCCC
Q 048260 103 ALRRGVRFFSALQASDGHWPAENAGPLFF--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY-HQNEDGG 172 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~-~QneDGG 172 (182)
-+.|-++|+...|.+||-.+.--.=|-++ |--.|-.+.++|+ +. |.++|.+.||++ .|.+-+|
T Consensus 7 ~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~-----ev--Pr~EktiefL~d~~qt~~~~ 72 (274)
T COG1689 7 NLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH-----EV--PRKEKTIEFLYDQMQTAGVG 72 (274)
T ss_pred hHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC-----cC--chHHHHHHHHHHHHHHhhhH
Confidence 57788999999999999876543322222 2222334456674 44 779999999998 3545444
No 73
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=51.53 E-value=8.3 Score=23.51 Aligned_cols=13 Identities=38% Similarity=1.214 Sum_probs=10.6
Q ss_pred ccceeeeeecCCC
Q 048260 23 YAGRQIWQFDPEA 35 (182)
Q Consensus 23 ~~grq~wefdp~~ 35 (182)
|.|+|.|.||+..
T Consensus 15 Fkg~~yw~~~~~~ 27 (45)
T smart00120 15 FKGDKYWRFDPKR 27 (45)
T ss_pred EeCCEEEEEcCCc
Confidence 4599999999753
No 74
>COG2173 DdpX D-alanyl-D-alanine dipeptidase [Cell envelope biogenesis, outer membrane]
Probab=49.00 E-value=6.7 Score=33.67 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=15.5
Q ss_pred ecCCccceeeeeecCC-CCC
Q 048260 19 STNNYAGRQIWQFDPE-AGS 37 (182)
Q Consensus 19 s~n~~~grq~wefdp~-~gt 37 (182)
+.|||.||++|++++- +=+
T Consensus 51 ~a~nf~grp~~~~~~~c~l~ 70 (211)
T COG2173 51 GANNFTGRPIYEIGARCLLH 70 (211)
T ss_pred hccccccccccccCchheec
Confidence 6899999999999864 344
No 75
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=48.39 E-value=25 Score=33.21 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 118 DGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 118 DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
-|+|| ++++.++.++.-+|. . +..++ +..+...+..+.+|.+++.|.+
T Consensus 360 GG~WP-------~LlW~~~aA~ik~gr------~--~lA~~-al~~a~~rL~~dewpEyydGkt 407 (436)
T PF12899_consen 360 GGSWP-------VLLWFLTAALIKMGR------P--ELAER-ALEAAENRLSKDEWPEYYDGKT 407 (436)
T ss_pred CCCcH-------HHHHHHHHHHHHcCC------H--HHHHH-HHHHHHHhhcccCCcccccCCC
Confidence 46665 446667777766774 1 33333 3444566777778999998864
No 76
>PLN03005 beta-fructofuranosidase
Probab=44.67 E-value=26 Score=34.03 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=28.6
Q ss_pred eccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 130 FFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 130 f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
++.+.++.++.=+|. . +..++++. +..++++-.+|.+++.|+.
T Consensus 453 ~Llw~~~aA~iK~gr------~--~lA~ral~-~ae~rl~~d~WpEyydGkt 495 (550)
T PLN03005 453 VLLWQLTAACIKTGR------P--QIARRAVD-LIESRLHRDCWPEYYDGKL 495 (550)
T ss_pred HHHHHHHHHHHHcCC------H--HHHHHHHH-HHHHHhhhcCchhhcCCCC
Confidence 556777778777785 2 33444433 3456677779999999874
No 77
>PLN02973 beta-fructofuranosidase
Probab=43.62 E-value=28 Score=33.88 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=29.1
Q ss_pred eccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 130 FFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 130 f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
++.+.++.++.=+|. . +..++++. +..++++-.+|.+|+.|+.
T Consensus 474 ~Llw~~~aA~iK~gr------~--~lA~ral~-~ae~rl~~d~WpEyyDGkt 516 (571)
T PLN02973 474 VLLWLLTAACIKTGR------P--QIARRAIE-VAEARLHKDHWPEYYDGKV 516 (571)
T ss_pred HHHHHHHHHHHHcCC------H--HHHHHHHH-HHHHHhhhcCChhhcCCCC
Confidence 567778888877885 2 33444443 3456677779999999874
No 78
>PLN02703 beta-fructofuranosidase
Probab=43.45 E-value=28 Score=34.18 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=29.1
Q ss_pred eccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCC
Q 048260 130 FFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 130 f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~s 181 (182)
++.+.+++++.=+|. . +..++++. +..++++-.+|.+++.|+.
T Consensus 506 ~LlWf~~aA~iK~Gr------~--~lA~ral~-~ae~rl~~d~WpEYyDGkt 548 (618)
T PLN02703 506 TLLWQLTVASIKMGR------P--EIAEKAVE-LAERRISLDKWPEYYDTKR 548 (618)
T ss_pred HHHHHHHHHHHHcCC------H--HHHHHHHH-HHHHHhhhccChhhccCCC
Confidence 557778888877885 2 33444443 3455677779999999874
No 79
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=43.32 E-value=12 Score=23.42 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=10.2
Q ss_pred ccceeeeeecCC
Q 048260 23 YAGRQIWQFDPE 34 (182)
Q Consensus 23 ~~grq~wefdp~ 34 (182)
|-|+|.|.||..
T Consensus 15 Fkg~~ywr~~~~ 26 (45)
T PF00045_consen 15 FKGNQYWRFDES 26 (45)
T ss_dssp EETTEEEEEETT
T ss_pred EECCEEEEEcCc
Confidence 459999999976
No 80
>COG4659 RnfG Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Energy production and conversion]
Probab=40.75 E-value=30 Score=29.45 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcc
Q 048260 89 GDEEEITYETAATTALRRGVRFFSALQ 115 (182)
Q Consensus 89 ~~~~~it~e~v~~~al~rA~~fl~~~Q 115 (182)
=.++-||+++| -.++.||+.|+..++
T Consensus 169 ftGATITPrAV-V~avk~a~~y~~~~~ 194 (195)
T COG4659 169 FTGATITPRAV-VNAVKRAVLYLQALP 194 (195)
T ss_pred ecCcccchHHH-HHHHHHHHHHHHhcC
Confidence 35889999999 999999999999876
No 81
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=39.12 E-value=23 Score=25.63 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=20.8
Q ss_pred CCceeecCCccceeeeeecCCCCCHHHHHHHH
Q 048260 14 DAYIYSTNNYAGRQIWQFDPEAGSDEERAQVE 45 (182)
Q Consensus 14 ~~~l~s~n~~~grq~wefdp~~gt~ee~a~ve 45 (182)
+|.++. +||+-| -+||++.+||...|-
T Consensus 35 n~~vF~----~~rkPW-I~Pd~~~ve~i~~vi 61 (74)
T COG3592 35 NPKVFN----LGRKPW-IMPDAVDVEEIVKVI 61 (74)
T ss_pred CHhhcc----cCCCCc-cCCCCCCHHHHHHHH
Confidence 566654 899999 589999999975553
No 82
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=37.51 E-value=64 Score=31.87 Aligned_cols=65 Identities=12% Similarity=0.240 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC--CCeec-------cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA--GPLFF-------LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQ 167 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~--g~~f~-------t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Q 167 (182)
.+..++.++||.+.|.+||+|+=.+. |.... ++..|.+++.....+. ....+.+++++.||.++-
T Consensus 313 ~~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~--~~~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 313 VDSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDH--AFYDKMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHcC
Confidence 57889999999999999999864422 21111 4445555555433222 112267899999999864
No 83
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=34.29 E-value=1.1e+02 Score=26.86 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHcccCCCccccccCC--------CeeccHHHHHHHHHhc
Q 048260 98 TAATTALRRGVRFFSALQASDGHWPAENAG--------PLFFLPPLVMCLYITG 143 (182)
Q Consensus 98 ~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g--------~~f~t~~~V~~l~~~G 143 (182)
.+ .+.++++++|+.+.+.++|.||..... =|--.|+.++++..+.
T Consensus 185 ~~-~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~ 237 (343)
T cd04794 185 SL-APLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAY 237 (343)
T ss_pred cH-HHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHH
Confidence 45 778999999999999999999865431 1112777776665554
No 84
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=30.74 E-value=25 Score=22.55 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=10.7
Q ss_pred CceeecCCccceeee
Q 048260 15 AYIYSTNNYAGRQIW 29 (182)
Q Consensus 15 ~~l~s~n~~~grq~w 29 (182)
|-+.|..++.||-+|
T Consensus 15 ~gM~sl~D~~gRTiW 29 (39)
T PF09292_consen 15 PGMKSLRDRNGRTIW 29 (39)
T ss_dssp TT-EEEE-TTS-EEE
T ss_pred cccccccccCCCEEE
Confidence 557899999999999
No 85
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=29.81 E-value=38 Score=28.39 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=22.0
Q ss_pred eecCCccceeeeeec-CC-CCCHHHHHHHHHHHHHHh
Q 048260 18 YSTNNYAGRQIWQFD-PE-AGSDEERAQVEAARLHFY 52 (182)
Q Consensus 18 ~s~n~~~grq~wefd-p~-~gt~ee~a~ve~~r~~f~ 52 (182)
.++|||+||.+ |+ |. ..+++--..+.+|.+...
T Consensus 24 at~~NF~g~~i--Y~~~~c~l~~~aA~aL~~a~~~l~ 58 (184)
T PRK10178 24 ATADNLTGKPI--YREARCLLHKDAEAALRKAVSIAQ 58 (184)
T ss_pred ccCCCcCCCcc--ccCCeEEECHHHHHHHHHHHHHHH
Confidence 48999999999 54 22 356655555666666654
No 86
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=29.09 E-value=36 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.872 Sum_probs=18.9
Q ss_pred CCceeecCCccceeeeeecCCC
Q 048260 14 DAYIYSTNNYAGRQIWQFDPEA 35 (182)
Q Consensus 14 ~~~l~s~n~~~grq~wefdp~~ 35 (182)
+-+|+-.|---|...|+|++..
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSS
T ss_pred CCEEEEEECCCCCEEEeeeCCC
Confidence 4589999999999999999764
No 87
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=27.71 E-value=61 Score=27.08 Aligned_cols=8 Identities=50% Similarity=1.186 Sum_probs=7.5
Q ss_pred eeeeeecC
Q 048260 26 RQIWQFDP 33 (182)
Q Consensus 26 rq~wefdp 33 (182)
|++|.||+
T Consensus 42 ~~~W~fDe 49 (212)
T PF06226_consen 42 RMTWTFDE 49 (212)
T ss_pred EEEEEeCc
Confidence 79999998
No 88
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=27.16 E-value=1e+02 Score=29.19 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=26.3
Q ss_pred cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCC
Q 048260 132 LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIE 178 (182)
Q Consensus 132 t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~e 178 (182)
+.++..+++.++. ..+ . ....++++.|..+|.+||=-|-+.+
T Consensus 66 l~a~a~~~~~~~D--~~l-~--~~~d~~V~~l~~~Q~~dGYl~~~~~ 107 (520)
T PF07944_consen 66 LEAAAYAYAYTGD--PEL-K--AKADEIVDELAAAQQPDGYLGTYPE 107 (520)
T ss_pred HHHHHHHHHHCCC--HHH-H--HHHHHHHHHHHHhccCCceeccccc
Confidence 5555566666662 111 1 3456668999999999995554443
No 89
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=25.17 E-value=73 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHhhCcCC
Q 048260 35 AGSDEERAQVEAARLHFYNNRDH 57 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~~r~~ 57 (182)
.-||.||..+-+|=++|..+|-.
T Consensus 15 lLt~~ER~~i~qaL~~y~~~Rnv 37 (80)
T cd07355 15 LLTPPERYGIKKALEDYFQHRNI 37 (80)
T ss_pred hCCHHHHHHHHHHHHHHHHhccH
Confidence 46999999999999999888753
No 90
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=25.00 E-value=81 Score=29.13 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHcccCCCccccccCC---CeeccHH----HHHHH----HHhcCCCCCCCCCHHHHHHHHHHHHhccC
Q 048260 100 ATTALRRGVRFFSALQASDGHWPAENAG---PLFFLPP----LVMCL----YITGHLNTVFPAESEHRKEILRYIHYHQN 168 (182)
Q Consensus 100 ~~~al~rA~~fl~~~Q~~DGhW~Ge~~g---~~f~t~~----~V~~l----~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn 168 (182)
+...++++++.+...|.++|.+|.-.-. ..+..|. +|+.+ ..+|... .+...-+..++.++|+..+.+
T Consensus 167 ~~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD~~-~l~~~~~~~~~~l~~~~~~~~ 245 (509)
T PF05592_consen 167 DAALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGDRE-FLEEYYPAMKRYLDYLERRVD 245 (509)
T ss_dssp -HHHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT-HH-HHHHHHHHHHHHHHHHHTTB-
T ss_pred cHHHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999975432 1222332 22222 1234211 111222457778899999888
Q ss_pred C
Q 048260 169 E 169 (182)
Q Consensus 169 e 169 (182)
+
T Consensus 246 ~ 246 (509)
T PF05592_consen 246 D 246 (509)
T ss_dssp T
T ss_pred c
Confidence 7
No 91
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 2WCO_A 2X03_B 2WDA_A 1N7N_A 1W3Y_A 1LXK_A 1LOH_A 1OJO_A 1C82_A 1EGU_A ....
Probab=23.97 E-value=79 Score=28.11 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCC------ccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcc
Q 048260 96 YETAATTALRRGVRFFSALQASDG------HWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQ 167 (182)
Q Consensus 96 ~e~v~~~al~rA~~fl~~~Q~~DG------hW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Q 167 (182)
.+.+ ..+|..|++|+....-..+ .|.-+.+.|..+...+|+ +. ..+++ +.+.+.++.|...+
T Consensus 82 n~~l-~~~I~~aL~~~~~~~y~~~~~~~gNWW~~eIG~P~~l~~~liL----l~---d~l~~--~~~~~~~~~i~~~~ 149 (324)
T PF08124_consen 82 NPAL-LNAILKALDWWYDNDYNPSKDEYGNWWDWEIGIPQALGNILIL----LY---DELPP--ELIAKYTAAIDRFV 149 (324)
T ss_dssp -HHH-HHHHHHHHHHHHHHTSSTTS-TTSSHHHHHTHHHHHHHHHHHH----TG---GGSCH--HHHHHHHHHHHHHS
T ss_pred CHHH-HHHHHHHHHHHHHhCCCCCCCCCCCccccccchHHHHHHHHHH----cc---cccCH--HHHHHHHHHHHHhC
Confidence 3566 8899999999998875444 666777766555555543 22 24666 77888888776543
No 92
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=23.84 E-value=2.3e+02 Score=25.11 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=49.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 89 GDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 89 ~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
..+..+|+..+ ...+.+...+|.+.--+.|...+-+..+..-....++++...|..-..++. ....+.+..+.+.
T Consensus 21 ~~~~~~ty~el-~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~--~~~~~~~~~~~~~ 95 (502)
T TIGR01734 21 YQGQELTYQQL-KEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDT--SIPSERIEMIIEA 95 (502)
T ss_pred cCCcEEeHHHH-HHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCC--cChHHHHHHHHHh
Confidence 34567999999 989999999998765556666666655555555666777778874444444 3334444444443
No 93
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=23.62 E-value=95 Score=27.03 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHccc-CCCccccccC--------------CCeeccHHHHHHHHHhcCCCCCCCCCH-------HHHHH
Q 048260 101 TTALRRGVRFFSALQA-SDGHWPAENA--------------GPLFFLPPLVMCLYITGHLNTVFPAES-------EHRKE 158 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~-~DGhW~Ge~~--------------g~~f~t~~~V~~l~~~G~l~~~~~~~~-------e~~~e 158 (182)
+.+++.+..+...+.. .+|-|.-.+. |+--++.+++..+..+- +++ +..++
T Consensus 147 ~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp-------~~~~~~~~~~~~~~~ 219 (336)
T PF07470_consen 147 DEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLP-------EDHPERDELLEIAKK 219 (336)
T ss_dssp HHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHH-------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhc-------chhhhHHHHHHHHHH
Confidence 5566666667766765 4776643321 12222334444444432 111 23456
Q ss_pred HHHHHHhccCCCCCccCcCCCC
Q 048260 159 ILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 159 ~~ryL~~~QneDGGWGl~~eG~ 180 (182)
++.+|.+.|.+||.|.-.+.-|
T Consensus 220 ~~~~l~~~q~~~G~w~~~~~~~ 241 (336)
T PF07470_consen 220 LADALARYQDEDGLWYQDLDDP 241 (336)
T ss_dssp HHHHHHTTSTTTSBEBSBTTTT
T ss_pred HHHHHHhcCCCCCCcceecCCC
Confidence 6788889999999998766544
No 94
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=23.37 E-value=2.6e+02 Score=27.76 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcccCC--Ccccccc--------C----CCeec-----cHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 048260 101 TTALRRGVRFFSALQASD--GHWPAEN--------A----GPLFF-----LPPLVMCLYITGHLNTVFPAESEHRKEILR 161 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~D--GhW~Ge~--------~----g~~f~-----t~~~V~~l~~~G~l~~~~~~~~e~~~e~~r 161 (182)
...++|++-=|+.++... |.-.+.. + +.+=+ .+..+.+|..+|. . +..+++.+
T Consensus 250 ~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~------~--~~a~~~~~ 321 (648)
T TIGR01535 250 NSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGD------V--DSALRSLD 321 (648)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCC------H--HHHHHHHH
Confidence 667889998899998863 7554443 2 12334 3345567777884 3 66889999
Q ss_pred HHHhccCCCCCc
Q 048260 162 YIHYHQNEDGGW 173 (182)
Q Consensus 162 yL~~~QneDGGW 173 (182)
||.+.|.+||.|
T Consensus 322 ~l~~~~~~~G~~ 333 (648)
T TIGR01535 322 YLAKVQQDNGMF 333 (648)
T ss_pred HHHHHhccCCCc
Confidence 999999999988
No 95
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=23.33 E-value=36 Score=23.87 Aligned_cols=14 Identities=43% Similarity=0.727 Sum_probs=12.2
Q ss_pred cccCCCccccccCC
Q 048260 114 LQASDGHWPAENAG 127 (182)
Q Consensus 114 ~Q~~DGhW~Ge~~g 127 (182)
.|.+.|||.++++.
T Consensus 4 h~Dee~hWVA~L~C 17 (61)
T PF12088_consen 4 HQDEEGHWVAELSC 17 (61)
T ss_pred cccccCCEEEEecc
Confidence 58899999999984
No 96
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=94 Score=28.34 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=21.8
Q ss_pred Cccceeeeeec-CC------------CCCHHHHHHHHHHHHH
Q 048260 22 NYAGRQIWQFD-PE------------AGSDEERAQVEAARLH 50 (182)
Q Consensus 22 ~~~grq~wefd-p~------------~gt~ee~a~ve~~r~~ 50 (182)
+--||..|-|| |+ +.+||=+..||+.++.
T Consensus 39 ~~kgR~YWYfd~p~~~g~~krrYvGp~ddpei~~rv~~~K~~ 80 (349)
T COG5397 39 DRKGRVYWYFDTPDGGGGRKRRYVGPADDPEIAQRVERHKAV 80 (349)
T ss_pred ccCCceEEEEecCCCCCCceecccCCCCCHHHHHHHHHHHHh
Confidence 56699999999 43 3577877888877654
No 97
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.61 E-value=55 Score=18.32 Aligned_cols=19 Identities=21% Similarity=0.733 Sum_probs=15.1
Q ss_pred CCceeecCCccceeeeeec
Q 048260 14 DAYIYSTNNYAGRQIWQFD 32 (182)
Q Consensus 14 ~~~l~s~n~~~grq~wefd 32 (182)
+-.|+..|---|+..|+|+
T Consensus 15 ~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 15 DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred CCEEEEEEcccCcEEEEcC
Confidence 3478888888899999875
No 98
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=22.43 E-value=64 Score=22.48 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHH
Q 048260 35 AGSDEERAQVEAAR 48 (182)
Q Consensus 35 ~gt~ee~a~ve~~r 48 (182)
-=||||..+++++-
T Consensus 44 CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 44 CITPEEDREILEAT 57 (60)
T ss_pred cCCHHHHHHHHHHH
Confidence 45999999998863
No 99
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=21.23 E-value=3.7e+02 Score=23.11 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHHHHHHHHHHHH
Q 048260 38 DEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETAATTALRRGVR 109 (182)
Q Consensus 38 ~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v~~~al~rA~~ 109 (182)
++.+++++++|+.....=- -..-+||.++ =+++++|.+.+ ..+|++|+.
T Consensus 190 ~~~~~~~~~~r~~l~e~va--e~dd~L~e~y--------------------l~~~~~~~~el-~~~l~~~~~ 238 (270)
T cd01886 190 EDLLEEAEEAREELIETLA--EFDDELMEKY--------------------LEGEEITEEEI-KAAIRKGTI 238 (270)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCHHHHHHH--------------------hCCCCCCHHHH-HHHHHHHHH
Confidence 3557789999998755211 1122333332 23457899999 999998875
No 100
>PTZ00491 major vault protein; Provisional
Probab=21.18 E-value=72 Score=32.71 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=28.4
Q ss_pred ceeecCCccceeeeeecCCCCCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhh
Q 048260 16 YIYSTNNYAGRQIWQFDPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFL 71 (182)
Q Consensus 16 ~l~s~n~~~grq~wefdp~~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~ 71 (182)
-++|+.+||| | -..-=+..|-.|=...+...|+ |+|++++-+-=|.
T Consensus 564 k~Fsv~DFvG------d---~Ck~iaSrIR~aVA~~~Fd~FH-knsa~iiR~aVFg 609 (850)
T PTZ00491 564 KCFSVPDFVG------D---ACKTIASRVRAAVASEPFDEFH-KNSAKIIRQAVFG 609 (850)
T ss_pred heeccCchHH------H---HHHHHHHHHHHHHhcCCHHHHh-ccHHHHHHHHhcc
Confidence 4677777777 3 1122233455555556666675 8899999777664
No 101
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=20.81 E-value=75 Score=30.45 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhccCCCCCccCcCC
Q 048260 153 SEHRKEILRYIHYHQNEDGGWGLHIE 178 (182)
Q Consensus 153 ~e~~~e~~ryL~~~QneDGGWGl~~e 178 (182)
+.+.-.++.||..-|++-|||..-++
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~ 404 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVE 404 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhh
Confidence 34456678999999999999987653
No 102
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=2.4e+02 Score=30.83 Aligned_cols=72 Identities=13% Similarity=0.238 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcccCCCccc--cc--cCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWP--AE--NAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~--Ge--~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl 175 (182)
..-|..+..-.+.-+.+||+.- |+ ..+++-+|+-.+-.+..... -..+++ ..+.++..||.++|.++|..-+
T Consensus 970 ~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~-~i~id~--~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 970 LKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKE-YIFIDP--NVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccC-ceEecH--HHHHHHHHHHHHhhccCceEec
Confidence 5667777788888899999874 33 33555555555444443332 012356 8999999999999999997654
No 103
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=20.61 E-value=2.5e+02 Score=25.03 Aligned_cols=56 Identities=16% Similarity=-0.012 Sum_probs=44.6
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcC
Q 048260 88 DGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGH 144 (182)
Q Consensus 88 d~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~ 144 (182)
+.++..+|+..+ ...+.+-..+|.+.--..|...+-+..+..-+..+++++...|.
T Consensus 6 ~~~~~~~ty~el-~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~ 61 (502)
T PRK08276 6 APSGEVVTYGEL-EARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGL 61 (502)
T ss_pred cCCCcEEEHHHH-HHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCc
Confidence 467788999999 99999999999998777788877777666666667777777774
No 104
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=20.16 E-value=28 Score=33.56 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=21.1
Q ss_pred ecCC-CCCHHHHHHHHHHHHHHhhCcC
Q 048260 31 FDPE-AGSDEERAQVEAARLHFYNNRD 56 (182)
Q Consensus 31 fdp~-~gt~ee~a~ve~~r~~f~~~r~ 56 (182)
+|.. -|||||||+-+++...|...|.
T Consensus 427 ~devyvgt~eer~~~~~~d~~~~~~~~ 453 (545)
T TIGR00811 427 LDEVYVGTAEERAAGEKPDHSVHAGRE 453 (545)
T ss_pred cceeEeCCHHHhhhccCCccccccccc
Confidence 4433 5999999999999999888764
Done!