Query 048260
Match_columns 182
No_of_seqs 244 out of 841
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 99.9 8.5E-26 2.9E-30 215.7 8.5 81 96-182 70-150 (732)
2 2sqc_A Squalene-hopene cyclase 99.9 4.8E-23 1.7E-27 193.0 7.1 81 95-182 7-87 (631)
3 1n4q_B Geranyltransferase type 99.3 1.2E-12 4.2E-17 116.9 5.1 119 58-182 69-219 (377)
4 2sqc_A Squalene-hopene cyclase 99.3 3.4E-12 1.2E-16 119.6 7.3 113 59-176 401-536 (631)
5 1w6k_A Lanosterol synthase; cy 99.2 1.9E-11 6.6E-16 116.8 8.6 115 58-176 483-632 (732)
6 1r76_A Pectate lyase; A-helica 99.1 3.7E-11 1.3E-15 108.8 5.6 125 36-174 150-334 (408)
7 2h6f_B Protein farnesyltransfe 99.0 2.2E-10 7.5E-15 104.1 5.7 74 103-182 173-248 (437)
8 2h6f_B Protein farnesyltransfe 99.0 1.5E-10 5.2E-15 105.2 3.7 143 27-180 31-198 (437)
9 3dss_B Geranylgeranyl transfer 98.9 9.7E-10 3.3E-14 96.3 6.1 73 103-181 115-189 (331)
10 3q7a_B Farnesyltransferase bet 98.9 1.5E-09 5.3E-14 100.8 6.9 67 103-175 168-236 (520)
11 1gxm_A Pectate lyase; mechanis 98.8 3.5E-10 1.2E-14 100.0 -2.6 136 25-168 65-251 (332)
12 1hzf_A Complement factor C4A; 98.5 1.7E-07 5.9E-12 82.1 7.8 76 96-176 86-164 (367)
13 3dss_B Geranylgeranyl transfer 98.4 2.3E-07 7.9E-12 81.2 5.4 71 104-180 68-140 (331)
14 1qqf_A Protein (complement C3D 98.1 5.7E-06 1.9E-10 69.1 8.0 74 97-175 34-111 (277)
15 2wy7_A Complement C3D fragment 98.0 1E-05 3.5E-10 68.8 7.8 74 97-175 50-127 (310)
16 1qqf_A Protein (complement C3D 98.0 6.9E-06 2.4E-10 68.6 5.1 73 101-173 88-178 (277)
17 2wy7_A Complement C3D fragment 98.0 6.3E-06 2.2E-10 70.1 4.8 75 101-175 104-196 (310)
18 1gxm_A Pectate lyase; mechanis 97.7 3.7E-05 1.3E-09 68.0 5.8 73 101-173 96-188 (332)
19 1n4q_B Geranyltransferase type 97.4 0.00016 5.3E-09 64.5 5.5 68 104-176 69-164 (377)
20 2pmv_A Gastric intrinsic facto 97.3 0.00029 1E-08 63.6 6.5 65 98-174 180-245 (399)
21 3q7a_B Farnesyltransferase bet 97.3 0.00026 8.8E-09 65.9 5.8 76 102-179 109-192 (520)
22 1r76_A Pectate lyase; A-helica 97.3 0.00034 1.2E-08 63.3 6.4 74 101-174 174-266 (408)
23 1hzf_A Complement factor C4A; 97.1 0.0009 3.1E-08 58.4 6.8 22 154-175 324-345 (367)
24 2bb6_A TCII, TC II, transcobal 97.1 0.0006 2E-08 61.8 5.5 63 102-174 202-269 (414)
25 4acq_A Alpha-2-macroglobulin; 97.1 0.00088 3E-08 68.4 7.4 72 101-175 982-1059(1451)
26 2hr0_B Complement C3 alpha' ch 96.9 0.0013 4.6E-08 63.7 7.0 72 101-175 298-372 (915)
27 2pn5_A TEP1R, thioester-contai 96.9 0.0019 6.4E-08 64.7 7.6 76 97-175 868-945 (1325)
28 2pn5_A TEP1R, thioester-contai 96.8 0.0003 1E-08 70.4 1.4 72 101-176 923-1007(1325)
29 3dra_B Geranylgeranyltransfera 96.6 0.0033 1.1E-07 56.5 6.3 74 106-181 119-218 (390)
30 4acq_A Alpha-2-macroglobulin; 96.3 0.003 1E-07 64.4 4.7 61 101-166 1037-1108(1451)
31 2hr0_B Complement C3 alpha' ch 96.1 0.0037 1.3E-07 60.6 4.3 74 101-174 349-440 (915)
32 4fxk_B Complement C4-A alpha c 95.7 0.024 8.2E-07 53.6 7.5 72 101-175 367-440 (767)
33 2b39_A C3; thioester, immune d 94.8 0.061 2.1E-06 55.3 8.1 72 101-175 1045-1119(1661)
34 3cu7_A Complement C5; Mg domai 93.7 0.12 3.9E-06 53.3 7.3 72 101-175 1046-1120(1676)
35 2bb6_A TCII, TC II, transcobal 93.5 0.084 2.9E-06 47.8 5.2 67 106-174 156-226 (414)
36 3sdr_A Alpha-bisabolene syntha 90.6 0.083 2.8E-06 51.4 1.7 23 154-176 101-123 (817)
37 3pya_A ENT-copalyl diphosphate 90.5 0.3 1E-05 47.1 5.4 54 104-165 52-110 (727)
38 3sdr_A Alpha-bisabolene syntha 90.1 0.32 1.1E-05 47.3 5.3 55 104-166 103-162 (817)
39 3prx_B Cobra venom factor; imm 88.8 0.08 2.7E-06 54.9 0.0 72 101-175 1029-1104(1642)
40 2pmv_A Gastric intrinsic facto 87.5 0.58 2E-05 42.1 4.8 67 102-174 130-203 (399)
41 3dra_B Geranylgeranyltransfera 87.4 0.29 9.8E-06 43.8 2.7 70 104-177 55-142 (390)
42 3s9v_A Abietadiene synthase, c 87.0 0.4 1.4E-05 46.5 3.6 56 104-166 76-135 (785)
43 3pya_A ENT-copalyl diphosphate 87.0 0.27 9.2E-06 47.4 2.4 23 154-176 50-72 (727)
44 3s9v_A Abietadiene synthase, c 86.0 0.31 1.1E-05 47.2 2.3 23 154-176 74-96 (785)
45 3p5p_A Taxadiene synthase; cla 85.9 0.31 1E-05 47.1 2.2 23 154-176 53-75 (764)
46 3p5p_A Taxadiene synthase; cla 85.8 0.61 2.1E-05 45.0 4.2 56 104-166 55-114 (764)
47 2hep_A UPF0291 protein YNZC; S 83.5 0.62 2.1E-05 33.6 2.4 46 36-99 22-67 (85)
48 2b39_A C3; thioester, immune d 80.3 2.6 8.7E-05 43.5 6.4 67 101-167 1096-1179(1661)
49 3pmm_A Putative cytoplasmic pr 74.7 15 0.00052 31.9 9.0 74 97-174 259-340 (382)
50 4fxk_B Complement C4-A alpha c 74.1 2.5 8.6E-05 39.8 4.0 22 154-175 601-622 (767)
51 1nc5_A Hypothetical protein YT 71.6 10 0.00034 32.6 7.0 70 98-171 238-322 (373)
52 3prx_B Cobra venom factor; imm 66.3 1.2 4.2E-05 46.3 0.0 67 100-166 1080-1162(1642)
53 3k11_A Putative glycosyl hydro 65.1 9.8 0.00034 34.3 5.7 72 96-172 289-370 (445)
54 3cu7_A Complement C5; Mg domai 60.4 6.9 0.00024 40.3 4.2 65 101-166 1097-1178(1676)
55 3e6u_A LANC-like protein 1; al 48.6 26 0.00087 30.6 5.4 47 96-143 249-302 (411)
56 3pmm_A Putative cytoplasmic pr 44.1 53 0.0018 28.4 6.7 80 82-170 8-104 (382)
57 3v5w_G G gamma-I, guanine nucl 36.4 33 0.0011 24.0 3.4 45 38-82 16-62 (77)
58 2jvd_A UPF0291 protein YNZC; s 35.4 28 0.00096 22.9 2.7 19 36-54 22-40 (54)
59 1lf6_A Glucoamylase; (alpha/al 35.4 37 0.0013 31.7 4.6 66 101-174 295-379 (684)
60 2j8p_A Cleavage stimulation fa 34.7 21 0.0007 23.0 1.9 20 35-54 26-45 (49)
61 1wgn_A UBAP1, ubiquitin associ 33.4 34 0.0012 23.2 2.9 16 156-171 47-62 (63)
62 1ulv_A Glucodextranase; GH fam 33.3 1.1E+02 0.0036 30.4 7.6 68 98-174 281-369 (1020)
63 3bhp_A UPF0291 protein YNZC; N 32.1 27 0.00093 23.4 2.2 19 35-53 21-39 (60)
64 3k11_A Putative glycosyl hydro 30.1 37 0.0013 30.5 3.5 26 155-180 295-320 (445)
65 2gz6_A N-acetyl-D-glucosamine 28.0 86 0.0029 26.1 5.3 63 101-168 76-152 (388)
66 1nc5_A Hypothetical protein YT 27.3 51 0.0018 28.1 3.8 22 156-177 243-265 (373)
67 3rrs_A Cellobiose phosphorylas 24.6 81 0.0028 30.3 5.0 71 101-171 381-479 (822)
68 1fr2_A Colicin E9 immunity pro 22.6 99 0.0034 21.8 3.9 31 32-66 24-54 (86)
69 2dna_A Unnamed protein product 22.5 50 0.0017 22.4 2.2 17 103-119 47-63 (67)
70 1r44_A D-alanyl-D-alanine dipe 22.1 38 0.0013 27.3 1.9 35 18-52 22-58 (202)
71 2cpw_A CBL-interacting protein 21.2 76 0.0026 20.8 2.9 14 156-169 48-61 (64)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.92 E-value=8.5e-26 Score=215.65 Aligned_cols=81 Identities=46% Similarity=0.815 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260 96 YETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 96 ~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl 175 (182)
.+.+ .++|+||++||+++|.+||||+|+++||+|++|++||++|++|. ++++ +++++++|||++|||+|||||+
T Consensus 70 ~~~~-~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~--~~~~~~~~yl~~~Q~~DGgWgl 143 (732)
T 1w6k_A 70 AHTA-FEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPA--GYREEIVRYLRSVQLPDGGWGL 143 (732)
T ss_dssp CCSH-HHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCT--THHHHHHHHHHHHSCTTSCBCS
T ss_pred cccH-HHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCH--HHHHHHHHHHHHhcCCCCCccC
Confidence 3456 88999999999999999999999999999999999999999995 6777 8999999999999999999999
Q ss_pred cCCCCCC
Q 048260 176 HIEGHST 182 (182)
Q Consensus 176 ~~eG~st 182 (182)
|++|+||
T Consensus 144 ~~~~~s~ 150 (732)
T 1w6k_A 144 HIEDKST 150 (732)
T ss_dssp BTTSCCB
T ss_pred CcCCCcc
Confidence 9999996
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.87 E-value=4.8e-23 Score=192.99 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCcc
Q 048260 95 TYETAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 95 t~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWG 174 (182)
+++.+ .++|+||++||+++|.+||||+|+++||+|++|++|+++|++|. .++ +++++++|||++|||+|||||
T Consensus 7 ~~~~~-~~~~~~~~~~~~~~q~~dG~w~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~~~~yl~~~Q~~dGgW~ 79 (631)
T 2sqc_A 7 EAPAY-ARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDR----VDR--DRMEKIRRYLLHEQREDGTWA 79 (631)
T ss_dssp -CCHH-HHHHHHHHHHHHHHCCTTSCCCCCEECCTHHHHHHHHHHHHTTC----CCH--HHHHHHHHHHHHHSCTTSCCC
T ss_pred chHHH-HHHHHHHHHHHHHhcCCCCcccccCCCcchhhHHHHHHHHHhCC----CCH--HHHHHHHHHHHHhcCCCCCcc
Confidence 45678 99999999999999999999999999999999999999999996 445 899999999999999999999
Q ss_pred CcCCCCCC
Q 048260 175 LHIEGHST 182 (182)
Q Consensus 175 l~~eG~st 182 (182)
+|++||||
T Consensus 80 ~~~~~~~~ 87 (631)
T 2sqc_A 80 LYPGGPPD 87 (631)
T ss_dssp SSTTCCCC
T ss_pred CCCCCCcc
Confidence 99999986
No 3
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.30 E-value=1.2e-12 Score=116.93 Aligned_cols=119 Identities=20% Similarity=0.250 Sum_probs=83.3
Q ss_pred CCchhHHHHhhhhhh-------hcc-cc----CCCCcceec-------cCCCCCcccHHHH----------HHHHHHHHH
Q 048260 58 LKPSADLLWRMQFLK-------EKK-FK----QTIPQVKIK-------VDGDEEEITYETA----------ATTALRRGV 108 (182)
Q Consensus 58 ~~~s~dlL~rmQ~~~-------en~-~~----~~ip~vk~~-------id~~~~~it~e~v----------~~~al~rA~ 108 (182)
.....||++.||... +++ |. ..+|+.++. +|.+.-..|..++ +....++++
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~ 148 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACL 148 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 346789999999821 232 32 246665532 2333334455543 111237899
Q ss_pred HHHHHcccCCCcccc--ccCCC-eeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCCCC
Q 048260 109 RFFSALQASDGHWPA--ENAGP-LFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGHST 182 (182)
Q Consensus 109 ~fl~~~Q~~DGhW~G--e~~g~-~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~st 182 (182)
+||.++|.+||+|.| +|+.+ +.++-..+.+++++|. .+. +.++++++||+++||.|||||+...+.|+
T Consensus 149 ~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~----~~~--~~v~ka~~fL~scQn~DGGfGe~p~~ESh 219 (377)
T 1n4q_B 149 AGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN----WSG--MDMKKAISYIRRSMSYDNGLAQGAGLESH 219 (377)
T ss_dssp HHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC----GGG--SCHHHHHHHHHHTBCTTSSBBSSTTSCBC
T ss_pred HHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC----CCh--HHHHHHHHHHHHhcCCCCCCCCCCCCCCc
Confidence 999999999999999 57655 3346666788899985 333 67999999999999999999998877664
No 4
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.29 E-value=3.4e-12 Score=119.60 Aligned_cols=113 Identities=24% Similarity=0.373 Sum_probs=84.3
Q ss_pred CchhHHHHhhhhhh--------hc--cccCCCCcceec--cCCCCCcccHHHH----------HHHHHHHHHHHHHHccc
Q 048260 59 KPSADLLWRMQFLK--------EK--KFKQTIPQVKIK--VDGDEEEITYETA----------ATTALRRGVRFFSALQA 116 (182)
Q Consensus 59 ~~s~dlL~rmQ~~~--------en--~~~~~ip~vk~~--id~~~~~it~e~v----------~~~al~rA~~fl~~~Q~ 116 (182)
..+.|||+.+|... .+ .+...+|+.+.+ +|+++.+.|..++ ...+++||++||.+.|.
T Consensus 401 ~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~ 480 (631)
T 2sqc_A 401 TKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQK 480 (631)
T ss_dssp HHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcC
Confidence 45789999999742 11 122356665543 5566777787766 13689999999999999
Q ss_pred CCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCc
Q 048260 117 SDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 117 ~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
+||+|+|.|+.+.++ |+..+.+|...|. .. .++.++++++||+++|++|||||..
T Consensus 481 ~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~---~~--~~~~i~rav~~L~s~Q~~DGgWg~~ 536 (631)
T 2sqc_A 481 PDGSWFGRWGVNYLYGTGAVVSALKAVGI---DT--REPYIQKALDWVEQHQNPDGGWGED 536 (631)
T ss_dssp TTSCCCCSSBSSHHHHHHHHHHHHHHTTC---CT--TSHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhCC---cc--cHHHHHHHHHHHHHhCcCCCCcCCc
Confidence 999999999876544 6666777777774 22 3388999999999999999999864
No 5
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.22 E-value=1.9e-11 Score=116.77 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCchhHHHHhhhhhh--------hc--cccCCCCccee----ccCCCCCcccHHHH-----------------HHHHHHH
Q 048260 58 LKPSADLLWRMQFLK--------EK--KFKQTIPQVKI----KVDGDEEEITYETA-----------------ATTALRR 106 (182)
Q Consensus 58 ~~~s~dlL~rmQ~~~--------en--~~~~~ip~vk~----~id~~~~~it~e~v-----------------~~~al~r 106 (182)
...+.++|++||... ++ .+...+|+.++ .++.+..++|..++ ...+++|
T Consensus 483 i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~r 562 (732)
T 1w6k_A 483 LCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQ 562 (732)
T ss_dssp HHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHH
Confidence 367899999999742 11 12334664442 14455555665443 0467999
Q ss_pred HHHHHHHcccCCCccccccCCCeec-cHHHHHHHHHhcCCCCCCCCCH---HHHHHHHHHHHhccCCCCCccCc
Q 048260 107 GVRFFSALQASDGHWPAENAGPLFF-LPPLVMCLYITGHLNTVFPAES---EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 107 A~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~~V~~l~~~G~l~~~~~~~~---e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|++||.+.|.+||+|.+.|+.+.++ +...+.+|..+|. ...++ +.++++++||+++|++|||||..
T Consensus 563 Av~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~----~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~ 632 (732)
T 1w6k_A 563 GLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQ----TYRDGTACAEVSRACDFLLSRQMADGGWGED 632 (732)
T ss_dssp HHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTC----CCBTTBCCHHHHHHHHHHHTTCCTTSCCCBC
T ss_pred HHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCC----cccccchhHHHHHHHHHHHHhcccCCCCCCC
Confidence 9999999999999999999866555 6667788888885 22222 68999999999999999999973
No 6
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.13 E-value=3.7e-11 Score=108.78 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHHh-----hCcCCCCchhHHHHhhhh--------hhhc-cccCCCCcceeccCCCCCcccHHHH--
Q 048260 36 GSDEERAQVEAARLHFY-----NNRDHLKPSADLLWRMQF--------LKEK-KFKQTIPQVKIKVDGDEEEITYETA-- 99 (182)
Q Consensus 36 gt~ee~a~ve~~r~~f~-----~~r~~~~~s~dlL~rmQ~--------~~en-~~~~~ip~vk~~id~~~~~it~e~v-- 99 (182)
.|..+...+.++.+..+ .-|-...-+.+||+.||+ +++| .+...||+.| |||.+++
T Consensus 150 dTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD--------Dvt~rvle~ 221 (408)
T 1r76_A 150 ATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND--------DALVHVAEL 221 (408)
T ss_dssp TTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG--------GHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc--------HHHHHHHHH
Confidence 45555555555544311 123445678999999998 3344 3677888875 3444333
Q ss_pred ---------------------HHHHHHHHHHHHHHcccC-CCccccccCCCeec-cHH----------H------H-HHH
Q 048260 100 ---------------------ATTALRRGVRFFSALQAS-DGHWPAENAGPLFF-LPP----------L------V-MCL 139 (182)
Q Consensus 100 ---------------------~~~al~rA~~fl~~~Q~~-DGhW~Ge~~g~~f~-t~~----------~------V-~~l 139 (182)
...+++||++||++.|.+ ||+|+ .|+.++.+ |.. . + +.+
T Consensus 222 L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~ 300 (408)
T 1r76_A 222 LSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILL 300 (408)
T ss_dssp HHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHH
T ss_pred HHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHH
Confidence 157999999999999999 99999 99988776 322 1 1 223
Q ss_pred HHhcCCCCCCCCCHH----HHHHHHHHHHhccCCCCCcc
Q 048260 140 YITGHLNTVFPAESE----HRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 140 ~~~G~l~~~~~~~~e----~~~e~~ryL~~~QneDGGWG 174 (182)
..++. +..++ .++++++||.++|++||+|-
T Consensus 301 ~LM~~-----~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 301 FLMEI-----EAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHTTS-----SSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred HHccC-----CCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 34452 22123 68999999999999999996
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.01 E-value=2.2e-10 Score=104.10 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcccCCCccccc-cCC-CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCC
Q 048260 103 ALRRGVRFFSALQASDGHWPAE-NAG-PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge-~~g-~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~ 180 (182)
.++||++||.+.|.+||+|.+. |+- .+..+-..+.++..+|. .+. +.++++++||.++||+|||||...++.
T Consensus 173 ~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~----~~~--~~v~k~~~~L~s~Q~~DGGwg~~pg~e 246 (437)
T 2h6f_B 173 NREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNI----ITP--DLFEGTAEWIARCQNWEGGIGGVPGME 246 (437)
T ss_dssp CHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTC----CCT--TTTTTHHHHHHHHBCTTSSBCSSTTSC
T ss_pred HHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCC----CCh--HHHHHHHHHHHHccCCCCCcCCCCCCC
Confidence 3789999999999999999996 542 33346666777888885 344 668899999999999999999988776
Q ss_pred CC
Q 048260 181 ST 182 (182)
Q Consensus 181 st 182 (182)
|+
T Consensus 247 Sh 248 (437)
T 2h6f_B 247 AH 248 (437)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=98.99 E-value=1.5e-10 Score=105.18 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=92.8
Q ss_pred eeeeecCC---CCCHHHHHHHHHHHHHHhhC----------cCCCCchhHHHHhh-hhhh--------hccccCCCCcce
Q 048260 27 QIWQFDPE---AGSDEERAQVEAARLHFYNN----------RDHLKPSADLLWRM-QFLK--------EKKFKQTIPQVK 84 (182)
Q Consensus 27 q~wefdp~---~gt~ee~a~ve~~r~~f~~~----------r~~~~~s~dlL~rm-Q~~~--------en~~~~~ip~vk 84 (182)
..+.|+-+ .-|.+++.+||..-.++.+. .+......++|.+| |... .+.+. ++++
T Consensus 31 ~~~~~~~~~~~t~ts~~Q~~~~~~~~~~~~~~~~~~~~~~~~l~~~~hi~~l~~~lq~~~gg~~a~D~~r~~l--~y~~- 107 (437)
T 2h6f_B 31 ARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWL--CYWI- 107 (437)
T ss_dssp GGGSCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCHHHH--HHHH-
T ss_pred hheecccCCCCCCCHHHHHHHHHHHHHHHHHHhhcccCCcccccHHHHHHHHHHcCCCCCCCcccccCCCccH--HHHH-
Confidence 44777655 44667887887766666642 34445678999999 7521 11111 1111
Q ss_pred ec-cCCCCCcccHHHHHHHHHHHHHHHHHHcccCCCcccc-ccCCCee-ccHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 048260 85 IK-VDGDEEEITYETAATTALRRGVRFFSALQASDGHWPA-ENAGPLF-FLPPLVMCLYITGHLNTVFPAESEHRKEILR 161 (182)
Q Consensus 85 ~~-id~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~G-e~~g~~f-~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~r 161 (182)
+. ++--+..++ ...++|+++|+++.|.+||.|.| +|+-+.+ .|...|.+|.++|..+. ++. ..++++++
T Consensus 108 l~aL~lLg~~~~-----~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~-~~~--i~i~kav~ 179 (437)
T 2h6f_B 108 LHSLELLDEPIP-----QIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEA-YDI--INREKLLQ 179 (437)
T ss_dssp HHHHHHTTCCCC-----HHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHH-HTT--SCHHHHHH
T ss_pred HHHHHHhCCCCC-----HHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCccc-ccc--hHHHHHHH
Confidence 11 111111111 34678999999999999999998 6765444 37778889999984100 122 44889999
Q ss_pred HHHhccCCCCCccCcCCCC
Q 048260 162 YIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 162 yL~~~QneDGGWGl~~eG~ 180 (182)
||.++|++||||+.+..|.
T Consensus 180 ~L~s~Q~~DGsf~~~~~Ge 198 (437)
T 2h6f_B 180 YLYSLKQPDGSFLMHVGGE 198 (437)
T ss_dssp HHHTTBCTTSCBBSSTTCC
T ss_pred HHHHhCCCCCCeeecCCCC
Confidence 9999999999999876653
No 9
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.93 E-value=9.7e-10 Score=96.29 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcccCCCccccc-cCC-CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCC
Q 048260 103 ALRRGVRFFSALQASDGHWPAE-NAG-PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge-~~g-~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~ 180 (182)
.++++++||.+.|.+||+|.+. |+- .+.+|...+.+|.++|. ++. +.++++++||.++||+|||||...+..
T Consensus 115 d~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~----~~~--~~~~k~v~~L~s~Q~~dGGfg~~pg~e 188 (331)
T 3dss_B 115 NVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGK----LDA--INVEKAIEFVLSCMNFDGGFGCRPGSE 188 (331)
T ss_dssp CHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTC----GGG--SCHHHHHHHHHTTBCTTSCBCSSTTCC
T ss_pred HHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCC----CCH--HHHHHHHHHHHHhCcCCCCcCCCCCCC
Confidence 3689999999999999999987 442 23346667788899996 333 568899999999999999999988765
Q ss_pred C
Q 048260 181 S 181 (182)
Q Consensus 181 s 181 (182)
|
T Consensus 189 s 189 (331)
T 3dss_B 189 S 189 (331)
T ss_dssp C
T ss_pred C
Confidence 5
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.90 E-value=1.5e-09 Score=100.77 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHcccCCCccccc-cCCC-eeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260 103 ALRRGVRFFSALQASDGHWPAE-NAGP-LFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DGhW~Ge-~~g~-~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl 175 (182)
..+++++||.++|.+||+|.|. |+.+ +..+-..+.+++++|. ++. +.++++++||+++||.|||||.
T Consensus 168 ~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~----~~~--~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 168 ARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDI----ITP--ELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp THHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTC----CCH--HHHTTHHHHHHTTBCTTSSBCS
T ss_pred HHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCC----CCh--HHHHHHHHHHHHhcCCCCCccC
Confidence 3788999999999999999996 6533 2236667778889995 445 8899999999999999999999
No 11
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.76 E-value=3.5e-10 Score=100.04 Aligned_cols=136 Identities=10% Similarity=0.065 Sum_probs=88.4
Q ss_pred ceeeeeecCCCCCHHHHHHHHHHHHHH--hhCcCCCCchhHHHHhhhh--------hhhc-cccCCCCcce-ec------
Q 048260 25 GRQIWQFDPEAGSDEERAQVEAARLHF--YNNRDHLKPSADLLWRMQF--------LKEK-KFKQTIPQVK-IK------ 86 (182)
Q Consensus 25 grq~wefdp~~gt~ee~a~ve~~r~~f--~~~r~~~~~s~dlL~rmQ~--------~~en-~~~~~ip~vk-~~------ 86 (182)
+.....||-+ .|..+...+.+++..- ..-|-...-+.+||+.||+ ++++ .+...||+.| ++
T Consensus 65 ~~~~~t~Dnd-dTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLel 143 (332)
T 1gxm_A 65 GNESGTIDNG-ATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTV 143 (332)
T ss_dssp CCSCEECGGG-TTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHH
T ss_pred CCCCCCccCc-cHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHH
Confidence 3456677755 5667766666665542 1223445678999999998 2333 4778899975 32
Q ss_pred ---cCCCCC----c-ccH---HHHHHHHHHHHHHHHHHcccCCCccccccCCCeec-cHH----------HH-------H
Q 048260 87 ---VDGDEE----E-ITY---ETAATTALRRGVRFFSALQASDGHWPAENAGPLFF-LPP----------LV-------M 137 (182)
Q Consensus 87 ---id~~~~----~-it~---e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~-t~~----------~V-------~ 137 (182)
+-.... + ... ... .++++||++||++.|.+||+|+|.|+.++.+ |.. .| +
T Consensus 144 L~~~~~~~~~~~~~~~~~~~~~~~-~~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~gi 222 (332)
T 1gxm_A 144 LDFAANKRAPFDTDVFSDNDRTRF-KTAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGV 222 (332)
T ss_dssp HHHHHTTCTTSCSTTSCHHHHHHH-HHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHH
T ss_pred HHHHHhccCCccccccccchhhhh-HHHHHHHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHH
Confidence 100000 0 000 233 5799999999999999999999999988776 332 22 2
Q ss_pred HHHHhcCCCCCCCCCHH----HHHHHHHHHHhccC
Q 048260 138 CLYITGHLNTVFPAESE----HRKEILRYIHYHQN 168 (182)
Q Consensus 138 ~l~~~G~l~~~~~~~~e----~~~e~~ryL~~~Qn 168 (182)
..+.++. +. ++ .++++++||.++|+
T Consensus 223 v~~LM~~-----~~-~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 223 LAFLMTQ-----PQ-TAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp HHHHTTS-----CC-CHHHHHHHHHHHHHHTCTTT
T ss_pred HHHhccC-----CC-CHHHHHHHHHHHHHHHhccc
Confidence 2344553 22 25 58899999999999
No 12
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.53 E-value=1.7e-07 Score=82.08 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCccccccC---CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCC
Q 048260 96 YETAATTALRRGVRFFSALQASDGHWPAENA---GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGG 172 (182)
Q Consensus 96 ~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~---g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGG 172 (182)
.+.+ ...|++|++++++.|.+||+| |-|+ ++.++|+-.+-+|...+.. ..++. +.++++++||.++|++||+
T Consensus 86 ~~~~-~~~i~~g~~~ll~~Q~~dGgf-~~~~~~~~~~~lTa~v~~~l~~a~~~-~~v~~--~~i~~a~~~L~~~Q~~dG~ 160 (367)
T 1hzf_A 86 KDHA-VDLIQKGYMRIQQFRKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQ-VGGSP--EKLQETSNWLLSQQQADGS 160 (367)
T ss_dssp HHHH-HHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHGGG-TCCCH--HHHHHHHHHHGGGBCTTSC
T ss_pred HHHH-HHHHHHHHHHHHhccCCCCCe-eccCCCCCcHHHHHHHHHHHHHHHHH-hCCCH--HHHHHHHHHHHHhhccCCC
Confidence 3456 789999999999999999999 6665 4556676666566666642 12334 8999999999999999999
Q ss_pred ccCc
Q 048260 173 WGLH 176 (182)
Q Consensus 173 WGl~ 176 (182)
|+..
T Consensus 161 ~~~~ 164 (367)
T 1hzf_A 161 FQDP 164 (367)
T ss_dssp BCCS
T ss_pred cccc
Confidence 9864
No 13
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.40 E-value=2.3e-07 Score=81.18 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcccCCCccccccCC--CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccCcCCCC
Q 048260 104 LRRGVRFFSALQASDGHWPAENAG--PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g--~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl~~eG~ 180 (182)
.+++++|+.+.|.+||.|.|..+. .+.+|-..|.+|.+++. ++. ..++++++||.++|++||||+....|.
T Consensus 68 r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~----~~~--id~~k~~~fL~~~Q~~DGsf~~~~~ge 140 (331)
T 3dss_B 68 KEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS----IHV--INVDKVVAYVQSLQKEDGSFAGDIWGE 140 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTC----GGG--SCHHHHHHHHHHTBCTTSCBBSSTTCC
T ss_pred HHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCC----ccH--HHHHHHHHHHhccCCCCCCEecccCCC
Confidence 356799999999999999987753 33345556777777775 333 448899999999999999999876553
No 14
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.15 E-value=5.7e-06 Score=69.13 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCccccccC---CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-ccCCCCC
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPAENA---GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY-HQNEDGG 172 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~---g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~-~QneDGG 172 (182)
+.+ ...|++|+.++++.|.+||+| +-|+ ++..+|+-.+.+|...+... .+++ +.++++++||.+ +|++||+
T Consensus 34 ~~~-~~~i~~g~~~~l~~q~~dGgf-~~f~~~~~s~wlTa~v~~~l~~a~~~~-~v~~--~~i~~a~~~L~~~~Q~~dG~ 108 (277)
T 1qqf_A 34 QEA-LELIKKGYTQQLAFKQPISAY-AAFNNRPPSTWLTAYVSRVFSLAANLI-AIDS--QVLCGAVKWLILEKQKPDGV 108 (277)
T ss_dssp HHH-HHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCH--HHHHHHHHHHHHHHBCTTSC
T ss_pred HHH-HHHHHHHHHHHHHhcCCCCCc-cccCCCCccHHHHHHHHHHHHHHhhcC-CCCH--HHHHHHHHHHHHhccCCCCC
Confidence 455 678999999999999999998 3344 56677887777777666432 2445 889999999995 9999999
Q ss_pred ccC
Q 048260 173 WGL 175 (182)
Q Consensus 173 WGl 175 (182)
|..
T Consensus 109 f~~ 111 (277)
T 1qqf_A 109 FQE 111 (277)
T ss_dssp BCC
T ss_pred ccC
Confidence 975
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.05 E-value=1e-05 Score=68.82 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCccccccC---CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-ccCCCCC
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPAENA---GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY-HQNEDGG 172 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~---g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~-~QneDGG 172 (182)
+.+ ...|++|+.++++.|.+||+| +-|+ ++..+|+-.+.+|....... .+++ +.++++++||.+ +|++||+
T Consensus 50 ~~~-~~~i~~g~~~~l~~q~~dGgf-~~f~~~~~s~wlTa~v~~~l~~a~~~~-~v~~--~~i~~a~~~L~~~~Q~~dGs 124 (310)
T 2wy7_A 50 QGA-LELIKKGYTQQLAFRQPSSAF-AAFVKRAPSTWLTAYVVKVFSLAVNLI-AIDS--QVLCGAVKWLILEKQKPDGV 124 (310)
T ss_dssp HHH-HHHHHHHHHHHHTTBCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCH--HHHHHHHHHHHHHHBCTTSC
T ss_pred HHH-HHHHHHHHHHHHHhcCCCCCc-ccCCCCCccHHHHHHHHHHHHHHHhcC-CCCH--HHHHHHHHHHHHhhcCCCCc
Confidence 445 678999999999999999998 3344 56677877777776666432 2445 889999999995 9999999
Q ss_pred ccC
Q 048260 173 WGL 175 (182)
Q Consensus 173 WGl 175 (182)
|..
T Consensus 125 f~~ 127 (310)
T 2wy7_A 125 FQE 127 (310)
T ss_dssp BCC
T ss_pred ccc
Confidence 974
No 16
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=97.97 E-value=6.9e-06 Score=68.61 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHH-cccCCCccccccCCC---------------eeccHHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSA-LQASDGHWPAENAGP---------------LFFLPPLVMCLYITGHL-NTVFPAESEHRKEILRYI 163 (182)
Q Consensus 101 ~~al~rA~~fl~~-~Q~~DGhW~Ge~~g~---------------~f~t~~~V~~l~~~G~l-~~~~~~~~e~~~e~~ryL 163 (182)
...|++|++||.+ .|.+||+|.+.+... +.+++-++++|.-.|.. +..++..++.++++++||
T Consensus 88 ~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 167 (277)
T 1qqf_A 88 SQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYL 167 (277)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHH
Confidence 5789999999996 999999999887432 23456666677666320 001344447899999999
Q ss_pred HhccCC-CCCc
Q 048260 164 HYHQNE-DGGW 173 (182)
Q Consensus 164 ~~~Qne-DGGW 173 (182)
.++|++ +++|
T Consensus 168 ~~~~~~~~~~y 178 (277)
T 1qqf_A 168 EASYLNLQRPY 178 (277)
T ss_dssp HHHHTTCCCHH
T ss_pred HHHhccCCCHH
Confidence 999885 4433
No 17
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=97.96 E-value=6.3e-06 Score=70.14 Aligned_cols=75 Identities=8% Similarity=0.122 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH-cccCCCccccccCCC---------------eeccHHHHHHHHHhcCC-CCCCCCCHHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSA-LQASDGHWPAENAGP---------------LFFLPPLVMCLYITGHL-NTVFPAESEHRKEILRYI 163 (182)
Q Consensus 101 ~~al~rA~~fl~~-~Q~~DGhW~Ge~~g~---------------~f~t~~~V~~l~~~G~l-~~~~~~~~e~~~e~~ryL 163 (182)
...|++|++||.+ .|.+||+|.+.+... +.+++-++++|.-.|.. +..++..++.++++++||
T Consensus 104 ~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 183 (310)
T 2wy7_A 104 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 183 (310)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHH
Confidence 5789999999996 999999999887532 23456666677666420 001344447899999999
Q ss_pred HhccCC-CCCccC
Q 048260 164 HYHQNE-DGGWGL 175 (182)
Q Consensus 164 ~~~Qne-DGGWGl 175 (182)
.++|++ +++|++
T Consensus 184 ~~~~~~~~~~y~~ 196 (310)
T 2wy7_A 184 EANYMNLQRSYTV 196 (310)
T ss_dssp HHHGGGCCCHHHH
T ss_pred HHHhhccCCHHHH
Confidence 999885 455543
No 18
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.72 E-value=3.7e-05 Score=67.99 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCC------Cee----ccHHHHHHHHHhcCCCCCC----------CCCHHHHHHHH
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAG------PLF----FLPPLVMCLYITGHLNTVF----------PAESEHRKEIL 160 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g------~~f----~t~~~V~~l~~~G~l~~~~----------~~~~e~~~e~~ 160 (182)
.+|+.||++||++.|.++|-|+.-+-- .+. +|+-.|.+|..++.-...+ +..++.+++++
T Consensus 96 ~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgi 175 (332)
T 1gxm_A 96 RDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGT 175 (332)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHH
Confidence 689999999999999999999876432 122 2566666666664211112 22336788999
Q ss_pred HHHHhccCCCCCc
Q 048260 161 RYIHYHQNEDGGW 173 (182)
Q Consensus 161 ryL~~~QneDGGW 173 (182)
+||++.|-+||||
T Consensus 176 d~Llk~Qe~dggw 188 (332)
T 1gxm_A 176 DYILKAQWKQNGV 188 (332)
T ss_dssp HHHHHHSCEETTE
T ss_pred HHHHHhhCccCCC
Confidence 9999999999976
No 19
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=97.40 E-value=0.00016 Score=64.51 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccc---------CCCccccccC-------------------CCeeccHHHHHHHHHhcCCCCCCCCCHHH
Q 048260 104 LRRGVRFFSALQA---------SDGHWPAENA-------------------GPLFFLPPLVMCLYITGHLNTVFPAESEH 155 (182)
Q Consensus 104 l~rA~~fl~~~Q~---------~DGhW~Ge~~-------------------g~~f~t~~~V~~l~~~G~l~~~~~~~~e~ 155 (182)
.+++++|+++.|. ++|-|.|--. +.+..|-..|.+|.++|. .++. ..
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~---~~~~--id 143 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGD---DLSR--VD 143 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTC---CSTT--SC
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCc---ccch--hh
Confidence 5688999999998 6899976421 233446667777877774 3444 45
Q ss_pred HHHHHHHHHhccCCCCCccCc
Q 048260 156 RKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 156 ~~e~~ryL~~~QneDGGWGl~ 176 (182)
++++++||.+.|++||||.-.
T Consensus 144 ~~~~~~fL~~~Q~~DGSf~g~ 164 (377)
T 1n4q_B 144 KEACLAGLRALQLEDGSFCAV 164 (377)
T ss_dssp HHHHHHHHHHHBCTTSCBCSS
T ss_pred HHHHHHHHHHhcCCCCCeeec
Confidence 789999999999999999864
No 20
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.34 E-value=0.00029 Score=63.59 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHH-HHHHHHHHHHhccCCCCCcc
Q 048260 98 TAATTALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESE-HRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 98 ~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e-~~~e~~ryL~~~QneDGGWG 174 (182)
.+ ..+|++++.+|++.|.+||++ ||.+.|+..|-+|.++|. .+. .+ ...+++++|+. |++||+|+
T Consensus 180 ~i-~~ai~~~~~~l~~~q~~dG~f-----Gn~yST~LA~QAL~~~~~----~~~-~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 180 LF-GQVLKDIVEKISMKIKDNGII-----GDIYSTGLAMQALSVTPE----PSK-KEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HH-HHHHHHHHHHHTTSBCTTSCB-----SSHHHHHHHHHHHHHCSS----CCS-SCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HH-HHHHHHHHHHHHHhhcCCCcc-----cccccHHHHHHHHHhcCC----Ccc-ccccHHHHHHHHHH-HhhCCCcC
Confidence 47 899999999999999999999 789999999999999995 122 13 47889999999 99999997
No 21
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=97.31 E-value=0.00026 Score=65.91 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcccCCCcccccc----CCCeeccHHHHHHHHHhcCCCC--CCCCCHHH--HHHHHHHHHhccCCCCCc
Q 048260 102 TALRRGVRFFSALQASDGHWPAEN----AGPLFFLPPLVMCLYITGHLNT--VFPAESEH--RKEILRYIHYHQNEDGGW 173 (182)
Q Consensus 102 ~al~rA~~fl~~~Q~~DGhW~Ge~----~g~~f~t~~~V~~l~~~G~l~~--~~~~~~e~--~~e~~ryL~~~QneDGGW 173 (182)
....++++|+++.|.+||-+.|-- .+.+..|-..|.+|.++|.... .++. -. ++++++||.+.|++||||
T Consensus 109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~--Id~~r~k~v~fL~slQ~~DGSF 186 (520)
T 3q7a_B 109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKD--LAAARQSIYEFFMRCKRPDGGF 186 (520)
T ss_dssp HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHH--HHHTHHHHHHHHHHHBCTTSCB
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhh--hhhHHHHHHHHHHHHhCCCCCE
Confidence 456789999999999999876542 2344457778888999985210 0111 23 788999999999999999
Q ss_pred cCcCCC
Q 048260 174 GLHIEG 179 (182)
Q Consensus 174 Gl~~eG 179 (182)
..+..|
T Consensus 187 ~g~~wG 192 (520)
T 3q7a_B 187 VVCEGG 192 (520)
T ss_dssp BSSTTC
T ss_pred ecCCCC
Confidence 876555
No 22
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.29 E-value=0.00034 Score=63.32 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCCC------eec----cHHHHHHHHHhcCC-C--CCCC-----CCHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAGP------LFF----LPPLVMCLYITGHL-N--TVFP-----AESEHRKEILRY 162 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g~------~f~----t~~~V~~l~~~G~l-~--~~~~-----~~~e~~~e~~ry 162 (182)
.+++.||++||++.|.++|-|+.-+--+ +.+ |+-.|-+|..++.- . ..++ ..++.++++++|
T Consensus 174 ~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~ 253 (408)
T 1r76_A 174 RDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHC 253 (408)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHH
Confidence 5789999999999999999998665422 222 55555555444420 0 0111 223678899999
Q ss_pred HHhccCC-CCCcc
Q 048260 163 IHYHQNE-DGGWG 174 (182)
Q Consensus 163 L~~~Qne-DGGWG 174 (182)
|++.|-+ ||.|-
T Consensus 254 Ll~~Qe~~dGsw~ 266 (408)
T 1r76_A 254 IVETQVVQDGKRL 266 (408)
T ss_dssp HHHHSCEETTEEC
T ss_pred HHHhhcccCCccc
Confidence 9999999 99874
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=97.09 E-value=0.0009 Score=58.39 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhccCCCCCccC
Q 048260 154 EHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl 175 (182)
+...++++||.++||.||||+.
T Consensus 324 ~~~~~iv~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 324 EMADQASAWLTRQGSFQGGFRS 345 (367)
T ss_dssp HHHHHHHHHHHHHTTSTTCSCS
T ss_pred hhhHHHHHHHHhCcCCCCCccc
Confidence 7889999999999999999985
No 24
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.07 E-value=0.0006 Score=61.84 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=49.8
Q ss_pred HHHHHHH----HHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHHHHhccCCCCCcc
Q 048260 102 TALRRGV----RFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAE-SEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 102 ~al~rA~----~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~-~e~~~e~~ryL~~~QneDGGWG 174 (182)
.+|++|+ ++|.+.|.+||++ ||.+.|+..|-+|..+|. .+.. ...+.+++++|++ |++||+++
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG~F-----GN~~ST~lA~QAL~~~~~----~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEGYF-----GNVYSTPLALQLLMGSLR----PSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCB-----SSTTTHHHHHHHHTTCSS----CCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCc-----cchhhHHHHHHHHHhcCC----CcccccchHHHHHHHHHH-hccCCCCC
Confidence 4466666 8888999999998 688889999999999984 2220 0256788999999 99999996
No 25
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.06 E-value=0.00088 Score=68.36 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcccCCCccccc------cCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCcc
Q 048260 101 TTALRRGVRFFSALQASDGHWPAE------NAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge------~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWG 174 (182)
..-|++|++++++.|.+||+|..- -.++.++|+-.+-+|.-.... ..+++ +.++++++||.++|++||+|.
T Consensus 982 ~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~-~~v~~--~~l~~a~~wL~~~Q~~dG~f~ 1058 (1451)
T 4acq_A 982 IGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAY-IFIDE--AHITQALIWLSQRQKDNGCFR 1058 (1451)
T ss_dssp HHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTT-SCCCT--HHHHHHHHHHHHTEETTTEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhh-cccCH--HHHHHHHHHHHhhcccCCccc
Confidence 456899999999999999997422 236777787766666555532 23466 899999999999999999997
Q ss_pred C
Q 048260 175 L 175 (182)
Q Consensus 175 l 175 (182)
.
T Consensus 1059 ~ 1059 (1451)
T 4acq_A 1059 S 1059 (1451)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=96.93 E-value=0.0013 Score=63.73 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcccCCCcccc--ccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH-hccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWPA--ENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIH-YHQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~G--e~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~-~~QneDGGWGl 175 (182)
...|++|+..+++.|.+||+|.. .-.++.++|+-.+.+|.-..... .+++ ..+.++++||. ++|++||+|..
T Consensus 298 ~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~-~v~~--~~i~~al~~L~~~~Q~~dG~f~~ 372 (915)
T 2hr0_B 298 LELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI-AIDS--QVLCGAVKWLILEKQKPDGVFQE 372 (915)
T ss_dssp HHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTS-CCCH--HHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcC-CCCH--HHHHHHHHHHHHhhccCCCcccc
Confidence 45788999999999999998742 22356677776665555444321 2445 88999999999 59999999963
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=96.86 E-value=0.0019 Score=64.66 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCcccc--ccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCcc
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPA--ENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~G--e~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWG 174 (182)
+.+ ...|++|++.+++.|.+||.|.. .-.++.++|+-.+-+|.....+...+++ ..+.++++||.+.|++||.|-
T Consensus 868 ~~~-~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~--~~l~~a~~~L~~~q~~dG~f~ 944 (1325)
T 2pn5_A 868 DKA-TNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDA--AMVEKALDWLASKQHFSGRFD 944 (1325)
T ss_dssp HHH-HHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCH--HHHHHHHHHHHHTCCTTSCCC
T ss_pred HHH-HHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCH--HHHHHHHHHHHhhhccCCCcc
Confidence 445 67899999999999999998742 2236677787776666665443223555 889999999999999999984
Q ss_pred C
Q 048260 175 L 175 (182)
Q Consensus 175 l 175 (182)
.
T Consensus 945 ~ 945 (1325)
T 2pn5_A 945 K 945 (1325)
T ss_dssp C
T ss_pred c
Confidence 3
No 28
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=96.80 E-value=0.0003 Score=70.36 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcccCCCccccccCC----------CeeccHHHH-HHHHHhcCCCCCCC-CCHHHHHHHHHHHHhccC
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENAG----------PLFFLPPLV-MCLYITGHLNTVFP-AESEHRKEILRYIHYHQN 168 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~g----------~~f~t~~~V-~~l~~~G~l~~~~~-~~~e~~~e~~ryL~~~Qn 168 (182)
...+++|++||.+.|.+||+|.+.+.. ..+.+..|| ++|.-.|. .. ...+.++++++||.++|+
T Consensus 923 ~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~----~~~~~~~~i~~a~~~L~~~~~ 998 (1325)
T 2pn5_A 923 AAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDI----AKAKHAEVIQKGMTYLSNQFG 998 (1325)
T ss_dssp HHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHH----HHHHTHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcc----cccccHHHHHHHHHHHHHhhc
Confidence 578999999999999999999987531 122222344 34543342 11 112467889999999998
Q ss_pred C-CCCccCc
Q 048260 169 E-DGGWGLH 176 (182)
Q Consensus 169 e-DGGWGl~ 176 (182)
. +++|++.
T Consensus 999 ~~~~~~~~a 1007 (1325)
T 2pn5_A 999 SINNAYDLS 1007 (1325)
T ss_dssp GCCCHHHHH
T ss_pred ccCCHHHHH
Confidence 7 9999865
No 29
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.57 E-value=0.0033 Score=56.46 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=49.2
Q ss_pred HHHHHHHHccc---C-CCccc-----c--c-----c-CCCeeccHHHHHHHHHhcCCCCCCC---------CCHHHHHHH
Q 048260 106 RGVRFFSALQA---S-DGHWP-----A--E-----N-AGPLFFLPPLVMCLYITGHLNTVFP---------AESEHRKEI 159 (182)
Q Consensus 106 rA~~fl~~~Q~---~-DGhW~-----G--e-----~-~g~~f~t~~~V~~l~~~G~l~~~~~---------~~~e~~~e~ 159 (182)
+-++||.++|. + ||++. + + + +.++=++=-.+..+++++.+....+ . ..+.++
T Consensus 119 ~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~--id~~~~ 196 (390)
T 3dra_B 119 KIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETD--IDLISL 196 (390)
T ss_dssp HHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CC--CCHHHH
T ss_pred HHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCccccccccccccccc--ccHHHH
Confidence 44889999998 6 89987 3 1 2 2344444445556677875331000 1 236889
Q ss_pred HHHHHhccCCCCCccCcCCCCC
Q 048260 160 LRYIHYHQNEDGGWGLHIEGHS 181 (182)
Q Consensus 160 ~ryL~~~QneDGGWGl~~eG~s 181 (182)
++||.++||-|||.|..+.+.|
T Consensus 197 ~~~I~~cq~ydGGfg~~p~~Es 218 (390)
T 3dra_B 197 QQFILDRININGGFSSTIMDES 218 (390)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCC
T ss_pred HHHHHHhcCCCCCcCCCCCccc
Confidence 9999999999999998776543
No 30
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=96.28 E-value=0.003 Score=64.45 Aligned_cols=61 Identities=8% Similarity=0.104 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcccCCCccc--ccc------C---CCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 101 TTALRRGVRFFSALQASDGHWP--AEN------A---GPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~--Ge~------~---g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
...+++|++||.+.|.+||+|. |.+ | ..+.+|+-.+++|...|. +..++.++++++||.++
T Consensus 1037 ~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~-----~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1037 EAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPL-----TVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp THHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTC-----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHh
Confidence 5789999999999999999998 443 1 234568888888888884 22337899999999876
No 31
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=96.12 E-value=0.0037 Score=60.61 Aligned_cols=74 Identities=8% Similarity=0.112 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHH-cccCCCccccccCC---------------CeeccHHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSA-LQASDGHWPAENAG---------------PLFFLPPLVMCLYITGHLN-TVFPAESEHRKEILRYI 163 (182)
Q Consensus 101 ~~al~rA~~fl~~-~Q~~DGhW~Ge~~g---------------~~f~t~~~V~~l~~~G~l~-~~~~~~~e~~~e~~ryL 163 (182)
...|++|++||.+ .|.+||+|.+.+.. .+.+++-++++|.-.|.+. ..++..++.++++++||
T Consensus 349 ~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL 428 (915)
T 2hr0_B 349 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 428 (915)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHH
Confidence 5789999999995 99999999876531 2334566667777776420 01233346788999999
Q ss_pred HhccCC-CCCcc
Q 048260 164 HYHQNE-DGGWG 174 (182)
Q Consensus 164 ~~~Qne-DGGWG 174 (182)
.++++. +++|+
T Consensus 429 ~~~~~~~~~~y~ 440 (915)
T 2hr0_B 429 EANYMNLQRSYT 440 (915)
T ss_dssp HHHGGGCCSHHH
T ss_pred HHhhhccCCHHH
Confidence 998765 44444
No 32
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.65 E-value=0.024 Score=53.58 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcccCCCccc--cccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWP--AENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~--Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~QneDGGWGl 175 (182)
...|+.|+.-+++.|.+||+|. +.-.++.++|+-.+-.|.-.... ..+++ ..+..++.||.++|.+||.|-+
T Consensus 367 ~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~-i~id~--~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 367 VDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQ-VGGSP--EKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp HHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSS-SSCCH--HHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhh-cCcch--HHHHHHHHHHHHhhhhcccchh
Confidence 4568999999999999999763 33346667777665555544332 12455 8899999999999999999864
No 33
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=94.84 E-value=0.061 Score=55.32 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcccCCCccc--cccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH-hccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWP--AENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIH-YHQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~--Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~-~~QneDGGWGl 175 (182)
...|+.|+.-+++.|.+||+|. +.-.++.++|+-.+-.|.-+...- .+++ ..+.++++||. ++|++||.|..
T Consensus 1045 ~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v~~--~~l~~a~~~L~~~~q~~~g~f~~ 1119 (1661)
T 2b39_A 1045 LELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLI-AIDS--KDLCETVKWLILEKQKPDGIFQE 1119 (1661)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCH--HHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcc-cCCH--HHHHHHHHHhhHhhCCCCCcccc
Confidence 5678889999999999999763 333577788887766665554322 3455 89999999999 59999999864
No 34
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=93.71 E-value=0.12 Score=53.29 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHcccCCCccc--cccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh-ccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWP--AENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY-HQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~--Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~-~QneDGGWGl 175 (182)
...|+.|+.-+++.|.+||+|. +.-.++.++|+-.+-.|.-+...- .+++ ..+.++++||.+ +|++||.|..
T Consensus 1046 ~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v~~--~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1046 KKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYV-EQNQ--NSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp HHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTS-CCCH--HHHHHHHHHHHHHSBCTTSCBCC
T ss_pred HHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcc-cCCH--HHHHHHHHHHHHhhCCCCCcccC
Confidence 4567888888889999999763 444577788887766555554322 3556 889999999998 9999999864
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=93.51 E-value=0.084 Score=47.80 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=44.3
Q ss_pred HHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHH----HHHHhccCCCCCcc
Q 048260 106 RGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEIL----RYIHYHQNEDGGWG 174 (182)
Q Consensus 106 rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~----ryL~~~QneDGGWG 174 (182)
+.+..|+..|..++|+.|++- ++=.++..++||..++.=+.. +..++.+.+++ ++|++.|++||++|
T Consensus 156 ~~v~~Ll~~~~~~~~~~g~~~-sVDT~AMA~lAL~C~~~~~~~-~~~~~~i~~al~~l~~~l~~~Q~~dG~FG 226 (414)
T 2bb6_A 156 SVVGKLLYAVEHKPHLLQDHV-SVDTMAMAGMAFSCLELSNLN-PKQRNRINLALKRVQEKILKAQTPEGYFG 226 (414)
T ss_dssp HHHHHHHHHHHSSSCSCCTTT-HHHHHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHHHHTBCTTSCBS
T ss_pred HHHHHHHHHhhccCcCCCCcc-cccHHHHHHHHHHHHhhcCCC-cchHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 467788888888888877652 222367777777777631111 11135577777 67778899999998
No 36
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=90.62 E-value=0.083 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccCCCCCccCc
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
+...+.++||++.|.+|||||..
T Consensus 101 p~Fp~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 101 PQFPQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCT
T ss_pred CCchHHHHHHHHccCCCCCCCCC
Confidence 56688999999999999999963
No 37
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=90.54 E-value=0.3 Score=47.06 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcccCCCccccccCCCee---c--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHh
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLF---F--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHY 165 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f---~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~ 165 (182)
....++|++..|.+||+|.+ .++... + |-..|+||.--+ +.+ .++.++++||..
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~-~~~~~~~D~ll~TLAcvlAL~~w~-----~~~--~~i~rGl~fl~~ 110 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGD-AYLFSYHDRLINTLACVVALRSWN-----LFP--HQCNKGITFFRE 110 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSC-SSSCCHHHHHHHHHHHHHHHHHTT-----CCH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcc-----CCH--HHHHHHHHHHHH
Confidence 34568999999999999953 322111 1 445566766545 234 789999999975
No 38
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=90.15 E-value=0.32 Score=47.32 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcccCCCccccccCCCee---c--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLF---F--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f---~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
...+++||+..|.+||+|.+. ..... + |-..|+||.--+ ..+ .++.++++||.+.
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~-~~~~~~d~ll~TlAcvlAL~~w~-----~~~--~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQ-SHFLLSDRLLATLSCVLVLLKWN-----VGD--LQVEQGIEFIKSN 162 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCT-TCCCHHHHHHHHHHHHHHHHHTT-----CCH--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCC-CCcchHHHHHHHHHHHHHHHHcc-----CCH--HHHHHHHHHHHHH
Confidence 356789999999999999532 22111 1 444566666655 234 8899999999864
No 39
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=88.81 E-value=0.08 Score=54.94 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcccCCCccc--cccCCCeeccHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHh-ccCCCCCccC
Q 048260 101 TTALRRGVRFFSALQASDGHWP--AENAGPLFFLPPLVMCLYITGHLNTV-FPAESEHRKEILRYIHY-HQNEDGGWGL 175 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~--Ge~~g~~f~t~~~V~~l~~~G~l~~~-~~~~~e~~~e~~ryL~~-~QneDGGWGl 175 (182)
..-|+.|..-+++-|.+||+|- |.-.++.++|+-.+-.+.-.... .. +++ ..+.++++||.+ +|++||.|.+
T Consensus 1029 ~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~-i~~Vd~--~~l~~~~~wL~~~~Q~~dG~F~e 1104 (1642)
T 3prx_B 1029 VNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKM-VAGISH--EIICGGVRWLILNRQQPDGAFKE 1104 (1642)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhh-ccCCCH--HHHHHHHHHHHhhccCCCCcccc
Confidence 5678899999999999999753 33346777777655443333221 12 566 889999999997 9999999854
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=87.50 E-value=0.58 Score=42.11 Aligned_cols=67 Identities=12% Similarity=-0.045 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcccCCCccccccCCCeeccHHHHHHHHHhcCCCCC--CCCC-----HHHHHHHHHHHHhccCCCCCcc
Q 048260 102 TALRRGVRFFSALQASDGHWPAENAGPLFFLPPLVMCLYITGHLNTV--FPAE-----SEHRKEILRYIHYHQNEDGGWG 174 (182)
Q Consensus 102 ~al~rA~~fl~~~Q~~DGhW~Ge~~g~~f~t~~~V~~l~~~G~l~~~--~~~~-----~e~~~e~~ryL~~~QneDGGWG 174 (182)
..-.+.+.-|+..|..||.|+ ..+ .++..++||..++. |.. +..+ +..++++.++|...|++||++|
T Consensus 130 ~v~~~~v~kLl~~~~~~g~~~---sVD--T~AMa~LAL~C~~~-~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 130 EATLPIAVRFAKTLLANSSPF---NVD--TGAMATLALTCMYN-KIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHHHHHHHHHHHHHCCSCC---CHH--HHHHHHHHHHHHHT-BCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS
T ss_pred CCCHHHHHHHHHHHHccCCcc---cch--HHHHHHHHHHHHhh-ccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 445677888888888886543 333 35666667766653 111 1111 2456777888999999999998
No 41
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=87.36 E-value=0.29 Score=43.83 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcccCC----Ccccccc----------CCCeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhccC-
Q 048260 104 LRRGVRFFSALQASD----GHWPAEN----------AGPLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYHQN- 168 (182)
Q Consensus 104 l~rA~~fl~~~Q~~D----GhW~Ge~----------~g~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn- 168 (182)
.++-++|+.+.|.++ |-..|-- .+++..|=..|..|.++|.. .++. -.++++++||.+.|+
T Consensus 55 ~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~~~~--vdr~~i~~~l~~lQ~~ 130 (390)
T 3dra_B 55 LIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSP--YHTI--INRKKIMNFLCKCQVK 130 (390)
T ss_dssp HHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC--GGGT--CCHHHHHHHHHHHBCC
T ss_pred HHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCch--hhcc--ccHHHHHHHHHHHhCC
Confidence 345689999988664 5444431 12333344456677777741 1222 348899999999999
Q ss_pred --C-CCCccCcC
Q 048260 169 --E-DGGWGLHI 177 (182)
Q Consensus 169 --e-DGGWGl~~ 177 (182)
+ |||++.++
T Consensus 131 ~~~~dGsF~~~~ 142 (390)
T 3dra_B 131 DGINKGGFVPTL 142 (390)
T ss_dssp SSTTTTCBCSEE
T ss_pred CCCCCCceeeec
Confidence 6 99999665
No 42
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=87.02 E-value=0.4 Score=46.49 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcccCCCccccccCCCee--c--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLF--F--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f--~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
...+++||+..|.+||+|.+.-..+.+ + |-..|+||.--+ ..+ +++.++++||.+.
T Consensus 76 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~-----~~~--~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 76 FPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWR-----TGE--TQVQKGIEFFRTQ 135 (785)
T ss_dssp SHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTT-----CCH--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcc-----cCH--HHHHHHHHHHHHH
Confidence 356689999999999999543211111 2 445566766655 234 8899999999753
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=86.98 E-value=0.27 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccCCCCCccCc
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|...+.++||++.|.+|||||..
T Consensus 50 p~Fp~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 50 PAFPSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp BSCHHHHHHHHHTCCTTSCCSCS
T ss_pred CCCHHHHHHHHhcCCCCCCCCCC
Confidence 45678899999999999999964
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=85.96 E-value=0.31 Score=47.18 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccCCCCCccCc
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|...+.++||++.|.+|||||..
T Consensus 74 p~Fp~~~~wil~nQ~~DGsWg~~ 96 (785)
T 3s9v_A 74 PHFPETVEWILQNQLKDGSWGEG 96 (785)
T ss_dssp BSSHHHHHHHHHCCCTTSCCSCS
T ss_pred CCchHHHHHHHHccCCCCCCCCC
Confidence 55678999999999999999964
No 45
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=85.92 E-value=0.31 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCCCCCccCc
Q 048260 154 EHRKEILRYIHYHQNEDGGWGLH 176 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl~ 176 (182)
|...+.++||++.|.+|||||..
T Consensus 53 p~Fp~~~~wil~nQ~~DGsWg~~ 75 (764)
T 3p5p_A 53 PRFPQALNWVFNNQLQDGSWGIE 75 (764)
T ss_dssp ESCHHHHHHHHHCCCTTSCCSCT
T ss_pred CCChHHHHHHHHccCCCCCCCCC
Confidence 46778899999999999999963
No 46
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=85.80 E-value=0.61 Score=45.05 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcccCCCccccccCCCee--c--cHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 104 LRRGVRFFSALQASDGHWPAENAGPLF--F--LPPLVMCLYITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 104 l~rA~~fl~~~Q~~DGhW~Ge~~g~~f--~--t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
...+++||+..|.+||+|.+.-....+ + |-..|+||.--+ ..+ .++.++++||...
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~-----~~~--~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWK-----TGH--SQVQQGAEFIAEN 114 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTT-----CCH--HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHcc-----CCH--HHHHHHHHHHHHH
Confidence 445689999999999999532211111 1 444566666655 234 7899999999754
No 47
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=83.49 E-value=0.62 Score=33.61 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHHhhCcCCCCchhHHHHhhhhhhhccccCCCCcceeccCCCCCcccHHHH
Q 048260 36 GSDEERAQVEAARLHFYNNRDHLKPSADLLWRMQFLKEKKFKQTIPQVKIKVDGDEEEITYETA 99 (182)
Q Consensus 36 gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rmQ~~~en~~~~~ip~vk~~id~~~~~it~e~v 99 (182)
-|+||.++-.++|++|-.+ | -.+|...|-.++| +|+++.+||++.+
T Consensus 22 LT~eEk~EQ~~LR~eYl~~-f----------------R~~~r~~L~~iki-vD~~G~dvtp~Kl 67 (85)
T 2hep_A 22 ITEEEKAEQQKLRQEYLKG-F----------------RSSMKNTLKSVKI-IDPEGNDVTPEKL 67 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C----------------C--------------------------
T ss_pred CCHHHHHHHHHHHHHHHHH-H----------------HHHHHHHhcceeE-ECCCCCcCCHHHH
Confidence 4999999999999998663 1 1234455666677 7899999999887
No 48
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=80.28 E-value=2.6 Score=43.46 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHH-cccCCCccccc-----------cCC----CeeccHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSA-LQASDGHWPAE-----------NAG----PLFFLPPLVMCLYITGHLNT-VFPAESEHRKEILRYI 163 (182)
Q Consensus 101 ~~al~rA~~fl~~-~Q~~DGhW~Ge-----------~~g----~~f~t~~~V~~l~~~G~l~~-~~~~~~e~~~e~~ryL 163 (182)
...|.+|++||.+ .|.+||+|.-. +.+ .+.+++-++++|.-.|.+.. .++...+.+.++++||
T Consensus 1096 ~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL 1175 (1661)
T 2b39_A 1096 SKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFL 1175 (1661)
T ss_dssp HHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHH
Confidence 6789999999995 99999999522 111 33446666777766664210 1223235677899999
Q ss_pred Hhcc
Q 048260 164 HYHQ 167 (182)
Q Consensus 164 ~~~Q 167 (182)
.++.
T Consensus 1176 ~~~~ 1179 (1661)
T 2b39_A 1176 ENHY 1179 (1661)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8753
No 49
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=74.67 E-value=15 Score=31.93 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCccccccCCC-eec----cHHHHHHH---HHhcCCCCCCCCCHHHHHHHHHHHHhccC
Q 048260 97 ETAATTALRRGVRFFSALQASDGHWPAENAGP-LFF----LPPLVMCL---YITGHLNTVFPAESEHRKEILRYIHYHQN 168 (182)
Q Consensus 97 e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~-~f~----t~~~V~~l---~~~G~l~~~~~~~~e~~~e~~ryL~~~Qn 168 (182)
+.+ ...+++-++++.+.|.+||.|.--+--| -+. ++.++.++ .-.|.|+. ...+..+++.+.|.++-+
T Consensus 259 ~~~-~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~---~Y~~~a~ka~~~l~~~i~ 334 (382)
T 3pmm_A 259 RYL-ITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQ---HYAGVAEKAIRGIVQNIS 334 (382)
T ss_dssp HHH-HHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCG---GGHHHHHHHHHHHHHTBC
T ss_pred HHH-HHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHhhCC
Confidence 456 7889999999999999999998544322 222 22222222 11355432 233678889999999999
Q ss_pred CCCCcc
Q 048260 169 EDGGWG 174 (182)
Q Consensus 169 eDGGWG 174 (182)
+||--+
T Consensus 335 ~dG~l~ 340 (382)
T 3pmm_A 335 PQGELL 340 (382)
T ss_dssp TTSCBC
T ss_pred CCCCEe
Confidence 999654
No 50
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=74.05 E-value=2.5 Score=39.75 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhccCCCCCccC
Q 048260 154 EHRKEILRYIHYHQNEDGGWGL 175 (182)
Q Consensus 154 e~~~e~~ryL~~~QneDGGWGl 175 (182)
+...++++||.++||.+|||+-
T Consensus 601 ~~a~~iv~WL~~Qr~~~Ggf~S 622 (767)
T 4fxk_B 601 EMADQASAWLTRQGSFQGGFRS 622 (767)
T ss_dssp HHHHHHHHHHHHTCCTTSSCSS
T ss_pred hHHHHHHHHHHHhhcCCCCCcC
Confidence 7788999999999999999974
No 51
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=71.62 E-value=10 Score=32.60 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHcccC-CCccccccCCC----eec----cHHHHHHHHH---hcCCCCCCCCCHHHHHHHHHHHHh
Q 048260 98 TAATTALRRGVRFFSALQAS-DGHWPAENAGP----LFF----LPPLVMCLYI---TGHLNTVFPAESEHRKEILRYIHY 165 (182)
Q Consensus 98 ~v~~~al~rA~~fl~~~Q~~-DGhW~Ge~~g~----~f~----t~~~V~~l~~---~G~l~~~~~~~~e~~~e~~ryL~~ 165 (182)
.+ ...+++-++++.+.|.+ ||.|..-+-.+ -+. ++.++.++.- .|.|+. ...+...++.++|.+
T Consensus 238 ~~-~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~---~Y~~~a~k~~~~l~~ 313 (373)
T 1nc5_A 238 VW-KNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDR---AYETTLLKAYQGLIQ 313 (373)
T ss_dssp HH-HHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCG---GGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcH---HHHHHHHHHHHHHHH
Confidence 35 67788889999999997 99998433211 122 2233333322 365442 233668888999987
Q ss_pred c---cCCCC
Q 048260 166 H---QNEDG 171 (182)
Q Consensus 166 ~---QneDG 171 (182)
+ .++||
T Consensus 314 ~~~~~~~dG 322 (373)
T 1nc5_A 314 HKTETSEDG 322 (373)
T ss_dssp HHEEECTTS
T ss_pred hceeECCCC
Confidence 4 58888
No 52
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=66.29 E-value=1.2 Score=46.26 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-cccCCCcccccc--------C------CCeeccHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHH
Q 048260 100 ATTALRRGVRFFSA-LQASDGHWPAEN--------A------GPLFFLPPLVMCLYITGHLNT-VFPAESEHRKEILRYI 163 (182)
Q Consensus 100 ~~~al~rA~~fl~~-~Q~~DGhW~Ge~--------~------g~~f~t~~~V~~l~~~G~l~~-~~~~~~e~~~e~~ryL 163 (182)
+...|.+|++||.+ .|.+||+|...- | .++.+|+-.+++|.-.+.+-. .++...+.+.+++.||
T Consensus 1080 d~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L 1159 (1642)
T 3prx_B 1080 SHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYL 1159 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 46789999999998 899999995331 1 256778888888876664200 1111124688899999
Q ss_pred Hhc
Q 048260 164 HYH 166 (182)
Q Consensus 164 ~~~ 166 (182)
.++
T Consensus 1160 ~~~ 1162 (1642)
T 3prx_B 1160 LKK 1162 (1642)
T ss_dssp ---
T ss_pred HHh
Confidence 865
No 53
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.10 E-value=9.8 Score=34.34 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCccccccCCC-eec----cHHHHHHH---HHhcCCCCCCCC--CHHHHHHHHHHHHh
Q 048260 96 YETAATTALRRGVRFFSALQASDGHWPAENAGP-LFF----LPPLVMCL---YITGHLNTVFPA--ESEHRKEILRYIHY 165 (182)
Q Consensus 96 ~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~g~-~f~----t~~~V~~l---~~~G~l~~~~~~--~~e~~~e~~ryL~~ 165 (182)
.+.+ ...+++-++++.+.|.+||.|.--+.-+ -+. ++.++.++ .-.|. ++. ..+...++.+.|..
T Consensus 289 r~~l-~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~----Ld~~~Y~~~A~ka~~~L~~ 363 (445)
T 3k11_A 289 RPKV-MDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGW----IDAIAYGPVAQLGWHAVAG 363 (445)
T ss_dssp HHHH-HHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHH
Confidence 3455 6889999999999999999998544211 122 22222222 22364 332 12567889999999
Q ss_pred ccCCCCC
Q 048260 166 HQNEDGG 172 (182)
Q Consensus 166 ~QneDGG 172 (182)
+-++||-
T Consensus 364 ~i~~dG~ 370 (445)
T 3k11_A 364 KINEEGQ 370 (445)
T ss_dssp TBCTTSC
T ss_pred hCCCCCC
Confidence 9999983
No 54
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=60.36 E-value=6.9 Score=40.31 Aligned_cols=65 Identities=6% Similarity=0.086 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH-cccCCCccccc--c------CC--------CeeccHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Q 048260 101 TTALRRGVRFFSA-LQASDGHWPAE--N------AG--------PLFFLPPLVMCLYITGHLNTVFPAESEHRKEILRYI 163 (182)
Q Consensus 101 ~~al~rA~~fl~~-~Q~~DGhW~Ge--~------~g--------~~f~t~~~V~~l~~~G~l~~~~~~~~e~~~e~~ryL 163 (182)
...|.+|++||.+ .|.+||+|.-. + +| .+.+++-++++|.-.|.+. .++...+.+.++++||
T Consensus 1097 ~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~-~~~~~~~~i~~a~~yL 1175 (1676)
T 3cu7_A 1097 QNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDIC-PLVKIDTALIKADNFL 1175 (1676)
T ss_dssp HHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhccccc-CCcccHHHHHHHHHHH
Confidence 6688999999999 99999998532 1 11 2234455556665554310 0111123456677777
Q ss_pred Hhc
Q 048260 164 HYH 166 (182)
Q Consensus 164 ~~~ 166 (182)
.++
T Consensus 1176 ~~~ 1178 (1676)
T 3cu7_A 1176 LEN 1178 (1676)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 55
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=48.59 E-value=26 Score=30.59 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCCccccccC--CC-----eeccHHHHHHHHHhc
Q 048260 96 YETAATTALRRGVRFFSALQASDGHWPAENA--GP-----LFFLPPLVMCLYITG 143 (182)
Q Consensus 96 ~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~--g~-----~f~t~~~V~~l~~~G 143 (182)
.+.+ .+.++++++|+.+.+.++|.||...+ .+ |.-.|+.++++....
T Consensus 249 ~~~~-~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~ 302 (411)
T 3e6u_A 249 QGKL-HSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAY 302 (411)
T ss_dssp HHHH-HHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHHHH
Confidence 4556 78999999999999999999997421 11 122777776665544
No 56
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=44.14 E-value=53 Score=28.42 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=49.5
Q ss_pred cceec--cCCCCCcccHHHHHHHHHHHHHHHHHHcccCCCccccccC-CC--------------eeccHHHHHHHHHhcC
Q 048260 82 QVKIK--VDGDEEEITYETAATTALRRGVRFFSALQASDGHWPAENA-GP--------------LFFLPPLVMCLYITGH 144 (182)
Q Consensus 82 ~vk~~--id~~~~~it~e~v~~~al~rA~~fl~~~Q~~DGhW~Ge~~-g~--------------~f~t~~~V~~l~~~G~ 144 (182)
+||+. +-...-.++.+.+ ..+|.++++.|..++.++|..+-+.. ++ =|++.+++.+..++|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd 86 (382)
T 3pmm_A 8 PVKHSPLLRQPERFIARSEL-QALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD 86 (382)
T ss_dssp CCTTCTTTSCCCCSSCHHHH-HHHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC
T ss_pred eccccHHHhhhhhcCCHHHH-HHHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC
Confidence 34443 3355667899999 99999999999999877665554432 11 1223334444456662
Q ss_pred CCCCCCCCHHHHHHHHHHHHhccCCC
Q 048260 145 LNTVFPAESEHRKEILRYIHYHQNED 170 (182)
Q Consensus 145 l~~~~~~~~e~~~e~~ryL~~~QneD 170 (182)
+ .....+.+|+.+.-+++
T Consensus 87 ------~--~y~~~a~~~~~~~~~~~ 104 (382)
T 3pmm_A 87 ------I--EMRDIIDRWFADRFAEG 104 (382)
T ss_dssp ------H--HHHHHHHHHHHHHHHHC
T ss_pred ------H--HHHHHHHHHHHHHHcCC
Confidence 3 66767766666544333
No 57
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=36.37 E-value=33 Score=24.03 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhCcCCCCchhHHHHhh--hhhhhccccCCCCc
Q 048260 38 DEERAQVEAARLHFYNNRDHLKPSADLLWRM--QFLKEKKFKQTIPQ 82 (182)
Q Consensus 38 ~ee~a~ve~~r~~f~~~r~~~~~s~dlL~rm--Q~~~en~~~~~ip~ 82 (182)
..-|..||++|.+-.-+|..+-.++.-|+.+ |...+..+..-+|.
T Consensus 16 ~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~~~~~~DpLl~Gvp~ 62 (77)
T 3v5w_G 16 AQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA 62 (77)
T ss_dssp HHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHSGGGCTTTSCCCG
T ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 4567899999999999999998777766553 22333345544544
No 58
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=35.41 E-value=28 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHHhhC
Q 048260 36 GSDEERAQVEAARLHFYNN 54 (182)
Q Consensus 36 gt~ee~a~ve~~r~~f~~~ 54 (182)
-|+||.++-.++|++|-.+
T Consensus 22 LT~eEk~EQ~~LR~eYl~~ 40 (54)
T 2jvd_A 22 ITEEEKAEQQKLRQEYLKG 40 (54)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999764
No 59
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=35.38 E-value=37 Score=31.67 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcccC--CCccccccC------------CCeecc-----HHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Q 048260 101 TTALRRGVRFFSALQAS--DGHWPAENA------------GPLFFL-----PPLVMCLYITGHLNTVFPAESEHRKEILR 161 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~--DGhW~Ge~~------------g~~f~t-----~~~V~~l~~~G~l~~~~~~~~e~~~e~~r 161 (182)
...+.|++--|+.++.+ .|.-.+..+ +.+.++ ...++++..+|. . +..++.++
T Consensus 295 ~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~------~--~~a~~~l~ 366 (684)
T 1lf6_A 295 NSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD------V--DSANRSLD 366 (684)
T ss_dssp CHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC------H--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC------H--HHHHHHHH
Confidence 45678888888888763 665533321 223332 234455555663 3 67888999
Q ss_pred HHHhccCCCCCcc
Q 048260 162 YIHYHQNEDGGWG 174 (182)
Q Consensus 162 yL~~~QneDGGWG 174 (182)
||.++|++||+|-
T Consensus 367 ~l~~~q~~~G~~~ 379 (684)
T 1lf6_A 367 YLAKVVKDNGMIP 379 (684)
T ss_dssp HHHHHHHHHSSCC
T ss_pred HHHhhcCCCCCcc
Confidence 9999999999973
No 60
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=34.66 E-value=21 Score=23.03 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHhhC
Q 048260 35 AGSDEERAQVEAARLHFYNN 54 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~~ 54 (182)
.=.|+||.+|...|+.|.++
T Consensus 26 ~LPp~qR~qI~~LR~q~~~~ 45 (49)
T 2j8p_A 26 MLPPEQRQSILILKEQIQKS 45 (49)
T ss_dssp TSCHHHHTHHHHHHHHHHCC
T ss_pred hCCHHHHHHHHHHHHHHHhc
Confidence 34689999999999999765
No 61
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.38 E-value=34 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccCCCC
Q 048260 156 RKEILRYIHYHQNEDG 171 (182)
Q Consensus 156 ~~e~~ryL~~~QneDG 171 (182)
+.+++.||.+|..+--
T Consensus 47 vErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 47 IEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhCCCCCC
Confidence 6788999999987653
No 62
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=33.26 E-value=1.1e+02 Score=30.39 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHcccCC--Cc--------cccccC----C-Ceec-----cHHHHHHHHHhcCCCCCCCCCHHHHH
Q 048260 98 TAATTALRRGVRFFSALQASD--GH--------WPAENA----G-PLFF-----LPPLVMCLYITGHLNTVFPAESEHRK 157 (182)
Q Consensus 98 ~v~~~al~rA~~fl~~~Q~~D--Gh--------W~Ge~~----g-~~f~-----t~~~V~~l~~~G~l~~~~~~~~e~~~ 157 (182)
.. .+.++|++--|..++... |. |+-..+ . .+.+ ....+++|..+|. . +..+
T Consensus 281 ~~-~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~------~--e~A~ 351 (1020)
T 1ulv_A 281 AL-RTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGD------E--EAAA 351 (1020)
T ss_dssp HH-HHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC------H--HHHH
T ss_pred HH-HHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCC------H--HHHH
Confidence 44 667888888888888753 43 542211 1 2344 2334455556673 3 6788
Q ss_pred HHHHHHHhcc-CCCCCcc
Q 048260 158 EILRYIHYHQ-NEDGGWG 174 (182)
Q Consensus 158 e~~ryL~~~Q-neDGGWG 174 (182)
+.++||.+.| ++||.|-
T Consensus 352 ~~l~~L~~~Q~~~~G~~~ 369 (1020)
T 1ulv_A 352 RGVEWLFTYQQQPDGHFP 369 (1020)
T ss_dssp HHHHHHHHHTCCTTSCCC
T ss_pred HHHHHHHHHhcCCCCCee
Confidence 8999999999 9999875
No 63
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=32.07 E-value=27 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 048260 35 AGSDEERAQVEAARLHFYN 53 (182)
Q Consensus 35 ~gt~ee~a~ve~~r~~f~~ 53 (182)
.-|+||.++-.++|++|-+
T Consensus 21 gLT~eEk~EQ~~LR~eYl~ 39 (60)
T 3bhp_A 21 VITEEEKAEQQKLRQEYLK 39 (60)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3599999999999999865
No 64
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.15 E-value=37 Score=30.54 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCCCCCccCcCCCC
Q 048260 155 HRKEILRYIHYHQNEDGGWGLHIEGH 180 (182)
Q Consensus 155 ~~~e~~ryL~~~QneDGGWGl~~eG~ 180 (182)
..++++.+|.++|.+||-|-..+..|
T Consensus 295 ~~~~~a~~l~~~Q~~~G~W~~vld~~ 320 (445)
T 3k11_A 295 YFRAHVRGVTALQSGEGFWHQLLDCN 320 (445)
T ss_dssp HHHHHHHHHHTTCCTTSCEESBTTCT
T ss_pred HHHHHHHHHHHhCCCCCchhhccCCC
Confidence 46678999999999999999766544
No 65
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=27.95 E-value=86 Score=26.07 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHc-ccCCCcccccc--CC-----Ceec--cHHHHHHH----HHhcCCCCCCCCCHHHHHHHHHHHHhc
Q 048260 101 TTALRRGVRFFSAL-QASDGHWPAEN--AG-----PLFF--LPPLVMCL----YITGHLNTVFPAESEHRKEILRYIHYH 166 (182)
Q Consensus 101 ~~al~rA~~fl~~~-Q~~DGhW~Ge~--~g-----~~f~--t~~~V~~l----~~~G~l~~~~~~~~e~~~e~~ryL~~~ 166 (182)
.+.++++++|+.+. +.++|.|+..+ .| .-.+ .+-+|.++ .++|. +..-+..+++.++|..+
T Consensus 76 ~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~-----~~~l~~A~~~~~~i~~~ 150 (388)
T 2gz6_A 76 LKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGE-----EWAKDVAMQAYNNVLRR 150 (388)
T ss_dssp HHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHH
Confidence 45679999999987 67789888554 11 1111 22333333 34563 11112455667788887
Q ss_pred cC
Q 048260 167 QN 168 (182)
Q Consensus 167 Qn 168 (182)
..
T Consensus 151 ~~ 152 (388)
T 2gz6_A 151 KD 152 (388)
T ss_dssp --
T ss_pred hc
Confidence 64
No 66
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=27.26 E-value=51 Score=28.07 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=17.8
Q ss_pred HHHHHHHHHhccCC-CCCccCcC
Q 048260 156 RKEILRYIHYHQNE-DGGWGLHI 177 (182)
Q Consensus 156 ~~e~~ryL~~~Qne-DGGWGl~~ 177 (182)
.++++++|.++|.+ ||-|-...
T Consensus 243 ~~~~a~~l~~~q~~~dG~W~~~l 265 (373)
T 1nc5_A 243 LQDMIKSICRYQDKETGLWYQIV 265 (373)
T ss_dssp HHHHHHHHHTTSCTTTSCCBSBT
T ss_pred HHHHHHHHHHhcCCCCCceeeec
Confidence 46678999999997 99998444
No 67
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=24.62 E-value=81 Score=30.34 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcccCCCccccccC-----CC-----eec-cH---HHHHHHHH--hcC---CCCCCC---C------C
Q 048260 101 TTALRRGVRFFSALQASDGHWPAENA-----GP-----LFF-LP---PLVMCLYI--TGH---LNTVFP---A------E 152 (182)
Q Consensus 101 ~~al~rA~~fl~~~Q~~DGhW~Ge~~-----g~-----~f~-t~---~~V~~l~~--~G~---l~~~~~---~------~ 152 (182)
.+.+|+.+.++.+.|.+||.++-.|. |+ .+. .+ .+.+..|+ +|. |+..++ . -
T Consensus 381 pe~ar~~il~~~~~Q~~dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl 460 (822)
T 3rrs_A 381 PERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPL 460 (822)
T ss_dssp HHHHHHHHHHHHTTCCTTSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEH
T ss_pred HHHHHHHHHHHHHhhcccCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccH
Confidence 46788889999999999995544332 11 122 11 12223333 443 322222 0 0
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 048260 153 SEHRKEILRYIHYHQNEDG 171 (182)
Q Consensus 153 ~e~~~e~~ryL~~~QneDG 171 (182)
=+|.+++++|++++..++|
T Consensus 461 ~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 461 FEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHHSBCTTS
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 1589999999998776654
No 68
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=22.64 E-value=99 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=21.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhCcCCCCchhHHHH
Q 048260 32 DPEAGSDEERAQVEAARLHFYNNRDHLKPSADLLW 66 (182)
Q Consensus 32 dp~~gt~ee~a~ve~~r~~f~~~r~~~~~s~dlL~ 66 (182)
+.+.+|.+|. +.+=.+|.++ +....++||+.
T Consensus 24 ~~~~~~e~e~---d~ll~~f~~~-teHP~gSDLIf 54 (86)
T 1fr2_A 24 NADTSSEEEL---VKLVTHFAEM-TEHPSGSDLIY 54 (86)
T ss_dssp TTCSSSHHHH---HHHHHHHHHH-HCCTTTTHHHH
T ss_pred hCCCCChHHH---HHHHHHHHHh-cCCCCcCceee
Confidence 4455665553 6677778877 66788899995
No 69
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.50 E-value=50 Score=22.37 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcccCCC
Q 048260 103 ALRRGVRFFSALQASDG 119 (182)
Q Consensus 103 al~rA~~fl~~~Q~~DG 119 (182)
-|.+|++||++.+..+|
T Consensus 47 nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 47 DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp CHHHHHHHHHHCCSSSC
T ss_pred CHHHHHHHHHhCCCccC
Confidence 47899999999998776
No 70
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=22.12 E-value=38 Score=27.34 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=24.7
Q ss_pred eecCCccceeeeeec-CC-CCCHHHHHHHHHHHHHHh
Q 048260 18 YSTNNYAGRQIWQFD-PE-AGSDEERAQVEAARLHFY 52 (182)
Q Consensus 18 ~s~n~~~grq~wefd-p~-~gt~ee~a~ve~~r~~f~ 52 (182)
.++|||+||.+=.|+ +. ..+++=...+.+|.+...
T Consensus 22 at~~Nf~g~~v~gY~~~~~~Lr~~aa~aL~~aq~~L~ 58 (202)
T 1r44_A 22 ATWDNFTGKPVDGYEVNRIVGTYELAESLLKAKELAA 58 (202)
T ss_dssp GSSCSTTSSCCTTBCSSSCEEEHHHHHHHHHHHHHTT
T ss_pred ccCcccCCCcCCCcCCCcEEECHHHHHHHHHHHHHHH
Confidence 489999999984444 33 356766677777777764
No 71
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.24 E-value=76 Score=20.80 Aligned_cols=14 Identities=7% Similarity=0.187 Sum_probs=11.7
Q ss_pred HHHHHHHHHhccCC
Q 048260 156 RKEILRYIHYHQNE 169 (182)
Q Consensus 156 ~~e~~ryL~~~Qne 169 (182)
..+++.||++|+.+
T Consensus 48 ve~A~ewL~~~~~d 61 (64)
T 2cpw_A 48 VQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHSCCSC
T ss_pred HHHHHHHHHhCCCC
Confidence 66788999999875
Done!