BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048261
(56 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
pdb|3UX3|B Chain B, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
Length = 130
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 40/44 (90%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
+L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 86 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 129
>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer
Length = 130
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 39/44 (88%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
+L+I ++ G+H+ EE +NKQ+NDKER+AAA ENPNLR++V++C+
Sbjct: 86 KLEIYISEGTHSTEEDINKQINDKERVAAAXENPNLREIVEQCV 129
>pdb|3BTP|A Chain A, Crystal Structure Of Agrobacterium Tumefaciens Vire2 In
Complex With Its Chaperone Vire1: A Novel Fold And
Implications For Dna Binding
Length = 556
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 2 FTDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVD 48
FT ++ Q+ + V+ G + SV + D++ + PNLR++ D
Sbjct: 420 FTQLMDQVGLPVSMGRQSHANSVKFEQFDRQAAVIVADGPNLREVPD 466
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 43 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 89
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r)
In Complex With Amppnp
Length = 334
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 50 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 96
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 50 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 96
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 45 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 91
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase
Domain Co-crystallized With Gefitinib
Length = 329
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 45 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 91
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 49 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 95
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 50 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 96
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 45 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 91
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With
Bibw2992
Length = 330
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 46 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 92
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 40 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 86
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 46 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 92
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent
Dual Inhibitor
Length = 315
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 37 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 83
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 45 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 91
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 50 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 96
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 46 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 92
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized
With Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized
With Dacomitinib
Length = 329
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 45 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 91
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 68 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 114
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 46 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 92
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant
Covalently Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant
Covalently Binding To Wz4002
Length = 331
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 47 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 93
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation
In Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation
In Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation
In Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation
In Complex With Iressa
Length = 327
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 43 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 89
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
An Irreversible Inhibitor 13-Jab
Length = 327
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 43 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 89
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
In Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
In Compex With Hki-272
Length = 328
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 44 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 90
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
In Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
In Complex With Aee788
Length = 328
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 44 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 90
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 43 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 89
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 47 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 93
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 53 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 99
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation
In Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation
In Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation
In Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation
In Complex With Afn941
Length = 327
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 43 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 89
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
An Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
+++ + + A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 43 VKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 89
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 19 ADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
A NK++ D+ + A+++NP++ +L+ CL S
Sbjct: 89 ATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,558,382
Number of Sequences: 62578
Number of extensions: 41992
Number of successful extensions: 190
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 33
length of query: 56
length of database: 14,973,337
effective HSP length: 28
effective length of query: 28
effective length of database: 13,221,153
effective search space: 370192284
effective search space used: 370192284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)