BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048261
(56 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9G6|U195A_ARATH MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310
PE=2 SV=2
Length = 157
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 44/48 (91%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55
++DI+VAPGSHA E+++NKQLNDKER+AAALENPNL ++VDECL S E
Sbjct: 110 KIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 157
>sp|Q9V968|U195B_DROME MIP18 family protein CG30152 OS=Drosophila melanogaster GN=CG30152
PE=1 SV=1
Length = 218
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
++LDI + G+H EE +NKQ+NDKERIAAA+ENPNLR LV+ C+
Sbjct: 170 IKLDIYIKKGAHQTEEEINKQINDKERIAAAMENPNLRDLVENCI 214
>sp|Q9DCL2|FA96A_MOUSE MIP18 family protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1
Length = 160
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 40/44 (90%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
+L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156
>sp|Q9H5X1|FA96A_HUMAN MIP18 family protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1
Length = 160
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 40/44 (90%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
+L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156
>sp|Q3T0U7|FA96A_BOVIN MIP18 family protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1
Length = 160
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 40/44 (90%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
+L+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct: 113 KLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156
>sp|Q9D187|MIP18_MOUSE Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus
musculus GN=Fam96b PE=2 SV=1
Length = 163
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
++D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL +
Sbjct: 115 FKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLSA 161
>sp|Q9Y3D0|MIP18_HUMAN Mitotic spindle-associated MMXD complex subunit MIP18 OS=Homo
sapiens GN=FAM96B PE=1 SV=1
Length = 163
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYS 53
++D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL +
Sbjct: 115 FKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLSA 161
>sp|Q9SR25|U195B_ARATH MIP18 family protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380
PE=2 SV=2
Length = 149
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 54
++D++VAPGSH E +VNKQL DKER+ AALENP L L+++ + C
Sbjct: 102 FKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPELVALLNKMMQVC 149
>sp|O62252|U195_CAEEL MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10
PE=1 SV=1
Length = 160
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55
+++ + + PGSH+ EES+N+QL DKER+AAA+EN L V+ECL E
Sbjct: 112 VKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECLRVPE 160
>sp|Q9GPR0|FA96A_DICDI MIP18 family protein FAM96A OS=Dictyostelium discoideum GN=fam96A
PE=3 SV=1
Length = 150
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 8 QLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
+++I + G+H E+ +NKQ+NDKERI AALENP + QLV +C+
Sbjct: 102 KIEIYIKKGTHQTEDEINKQINDKERIIAALENPEIFQLVKKCI 145
>sp|Q9VTC4|U195A_DROME MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949
PE=1 SV=1
Length = 156
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 37/45 (82%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 51
++ +++ PG+HA E +VNKQL DKER+AAALEN +L +++++C+
Sbjct: 108 FKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQCI 152
>sp|Q54QK1|FA96B_DICDI MIP18 family protein FAM96B OS=Dictyostelium discoideum GN=fam96B
PE=3 SV=2
Length = 163
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALE-NPNLRQLVDECL 51
++D+ V PGSH+ E SVNKQLNDKER++AAL+ + ++ +V+EC+
Sbjct: 115 FKVDVIVTPGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECI 160
>sp|Q9UTL0|YIVG_SCHPO MIP18 family protein C144.16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC144.16 PE=3 SV=1
Length = 179
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 54
+D+KV G+HA E VNKQLNDKER+AAA EN L +++ + +C
Sbjct: 131 FHVDVKVKKGTHASESQVNKQLNDKERVAAACENEQLLSVLNGMMATC 178
>sp|P38829|YHS2_YEAST MIP18 family protein YHR122W OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHR122W PE=1 SV=1
Length = 231
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 7 LQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55
++ I + G+H E VNKQLNDKER+AAA EN L +V + L +C+
Sbjct: 183 FRITILLKKGTHDSENQVNKQLNDKERVAAACENEQLLGVVSKMLVTCK 231
>sp|Q15TJ8|Y2273_PSEA6 PKHD-type hydroxylase Patl_2273 OS=Pseudoalteromonas atlantica
(strain T6c / ATCC BAA-1087) GN=Patl_2273 PE=3 SV=1
Length = 227
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 9 LDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLY 52
LD K GS A + N+QL+D +A L N +R+L L+
Sbjct: 27 LDGKHTAGSQASKVKYNQQLDDGSALAIELRNTVIRKLSGNALF 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,054,125
Number of Sequences: 539616
Number of extensions: 554024
Number of successful extensions: 2066
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2049
Number of HSP's gapped (non-prelim): 17
length of query: 56
length of database: 191,569,459
effective HSP length: 29
effective length of query: 27
effective length of database: 175,920,595
effective search space: 4749856065
effective search space used: 4749856065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)