Query 048261
Match_columns 56
No_of_seqs 104 out of 186
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 07:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3381 Uncharacterized conser 100.0 8.9E-31 1.9E-35 178.1 6.1 53 3-55 109-161 (161)
2 COG5133 Uncharacterized conser 99.9 7.7E-23 1.7E-27 140.8 5.4 52 3-54 129-180 (181)
3 PF05479 PsaN: Photosystem I r 88.8 0.048 1E-06 37.0 -2.0 13 23-35 64-76 (138)
4 PLN00054 photosystem I reactio 86.0 0.34 7.5E-06 32.9 0.8 15 23-37 64-78 (139)
5 PF15043 CNRIP1: CB1 cannabino 64.8 5.5 0.00012 27.5 2.0 18 2-19 41-58 (161)
6 PF08111 Pea-VEAacid: Pea-VEAa 62.5 2.7 5.8E-05 19.1 0.1 9 12-20 2-10 (15)
7 PF07875 Coat_F: Coat F domain 57.5 6.8 0.00015 21.8 1.2 17 36-52 23-41 (64)
8 PHA00360 II replication initia 56.2 8.8 0.00019 29.8 2.0 31 20-50 200-242 (421)
9 PRK10597 DNA damage-inducible 53.3 7 0.00015 24.1 0.9 27 11-39 40-68 (81)
10 PRK00447 hypothetical protein; 46.1 11 0.00024 25.0 1.0 24 9-40 3-26 (144)
11 PF13541 ChlI: Subunit ChlI of 42.2 14 0.00031 23.5 1.0 13 30-42 25-37 (121)
12 PF09860 DUF2087: Uncharacteri 42.0 19 0.00041 21.2 1.5 32 13-50 24-57 (71)
13 PF13137 DUF3983: Protein of u 40.7 14 0.00031 19.9 0.8 11 30-40 17-27 (34)
14 PF03960 ArsC: ArsC family; I 38.2 13 0.00028 22.3 0.4 20 26-45 69-88 (110)
15 PF01877 RNA_binding: RNA bind 37.9 22 0.00048 22.3 1.4 16 17-40 9-24 (120)
16 PF06183 DinI: DinI-like famil 37.8 7.2 0.00016 22.8 -0.8 31 9-39 24-54 (65)
17 cd08038 LARP_2 La RNA-binding 36.7 5.2 0.00011 24.1 -1.5 23 29-51 49-71 (73)
18 cd08789 CARD_IPS-1_RIG-I Caspa 36.7 43 0.00094 20.0 2.5 21 29-49 33-53 (84)
19 PF14490 HHH_4: Helix-hairpin- 36.7 22 0.00048 21.1 1.3 16 24-39 66-81 (94)
20 PF15431 TMEM190: Transmembran 36.3 12 0.00025 25.4 -0.0 9 35-43 26-34 (134)
21 KOG2857 Predicted MYND Zn-fing 36.1 41 0.00089 23.4 2.6 25 25-49 81-105 (157)
22 cd03032 ArsC_Spx Arsenate Redu 35.9 19 0.0004 21.9 0.8 19 27-45 73-91 (115)
23 PF07914 DUF1679: Protein of u 29.6 29 0.00063 26.0 1.1 16 16-31 10-25 (414)
24 PF06240 COXG: Carbon monoxide 28.9 46 0.001 20.5 1.8 22 30-54 8-29 (140)
25 PRK09862 putative ATP-dependen 28.6 24 0.00053 27.5 0.6 13 31-43 46-58 (506)
26 PRK01655 spxA transcriptional 28.6 22 0.00049 22.3 0.3 19 27-45 73-91 (131)
27 cd03033 ArsC_15kD Arsenate Red 27.8 25 0.00053 21.9 0.4 20 26-45 70-89 (113)
28 PF13232 Complex1_LYR_1: Compl 27.7 32 0.00069 18.7 0.8 17 23-39 35-51 (61)
29 PF13027 DUF3888: Protein of u 27.5 56 0.0012 19.8 1.9 16 4-19 45-62 (88)
30 COG1325 Predicted exosome subu 27.4 25 0.00055 24.0 0.4 16 17-40 16-31 (149)
31 PF05144 Phage_CRI: Phage repl 27.3 76 0.0016 22.9 2.9 32 20-51 195-238 (271)
32 PF08998 Epsilon_antitox: Bact 27.0 21 0.00046 22.7 0.0 18 18-35 69-89 (89)
33 PF11923 DUF3441: Domain of un 26.9 41 0.00089 21.4 1.3 14 5-18 42-55 (112)
34 PF04576 Zein-binding: Zein-bi 26.8 58 0.0013 20.7 2.0 20 30-49 23-42 (94)
35 PF01520 Amidase_3: N-acetylmu 26.1 61 0.0013 20.1 2.0 29 10-38 139-169 (175)
36 PF14835 zf-RING_6: zf-RING of 25.9 25 0.00053 21.2 0.1 14 17-30 50-63 (65)
37 PHA02663 hypothetical protein; 25.5 55 0.0012 22.8 1.8 15 21-35 22-36 (172)
38 KOG0307 Vesicle coat complex C 25.5 69 0.0015 27.9 2.7 30 21-50 535-565 (1049)
39 PRK14555 hypothetical protein; 25.3 29 0.00062 22.9 0.4 16 17-40 11-26 (145)
40 PLN00078 photosystem I reactio 25.1 39 0.00083 22.6 1.0 13 23-35 69-81 (122)
41 cd02977 ArsC_family Arsenate R 24.9 32 0.00069 20.2 0.5 20 26-45 72-91 (105)
42 TIGR00368 Mg chelatase-related 24.5 33 0.00071 26.5 0.6 13 31-43 41-53 (499)
43 PF05751 FixH: FixH; InterPro 24.4 45 0.00097 20.4 1.1 26 13-39 34-59 (146)
44 PRK13344 spxA transcriptional 24.1 34 0.00075 21.7 0.6 20 26-45 72-91 (132)
45 TIGR02654 circ_KaiB circadian 22.7 41 0.00088 20.9 0.7 11 28-38 76-86 (87)
46 cd08818 CARD_MDA5_1 Caspase ac 22.1 96 0.0021 19.5 2.3 19 30-48 35-53 (88)
47 PF13954 PapC_N: PapC N-termin 21.9 72 0.0016 20.1 1.8 13 2-14 27-39 (146)
48 PF08125 Mannitol_dh_C: Mannit 21.8 77 0.0017 21.7 2.0 27 26-52 90-116 (245)
49 PF06439 DUF1080: Domain of Un 21.2 89 0.0019 19.2 2.0 16 2-17 52-67 (185)
50 PRK12559 transcriptional regul 21.0 36 0.00077 21.6 0.2 20 26-45 72-91 (131)
51 PF14730 DUF4468: Domain of un 20.0 78 0.0017 18.6 1.5 15 3-17 64-78 (91)
No 1
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=8.9e-31 Score=178.14 Aligned_cols=53 Identities=58% Similarity=0.944 Sum_probs=50.8
Q ss_pred cccceeEEEEecCCCCcCHHHHHhhhchHHHHHHHhcCchHHHHHHHHhccCC
Q 048261 3 TDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 55 (56)
Q Consensus 3 ~~~~fKvdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~~~~ 55 (56)
-|.||||+|+|+||||++|++||||||||||||||||||+|+++||+||..++
T Consensus 109 Lp~rfkvdV~I~~GtH~tE~~vNKQLnDKERVaAA~EN~~L~~~v~~cl~~~~ 161 (161)
T KOG3381|consen 109 LPPRFKVDVYIKPGTHATEEAVNKQLNDKERVAAALENPNLLEVVNKCLPACE 161 (161)
T ss_pred CCCceeEEEEEcCCCcCCHHHHHhhhccHHHHHHHhcChHHHHHHHHHhccCC
Confidence 38899999999999999999999999999999999999999999999998764
No 2
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=7.7e-23 Score=140.80 Aligned_cols=52 Identities=40% Similarity=0.638 Sum_probs=50.2
Q ss_pred cccceeEEEEecCCCCcCHHHHHhhhchHHHHHHHhcCchHHHHHHHHhccC
Q 048261 3 TDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 54 (56)
Q Consensus 3 ~~~~fKvdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~~~ 54 (56)
-|.||.|+|.|+.|+|.+|.++||||||||||+||.||++|+.++++||.+|
T Consensus 129 lpprF~v~v~ikkGtH~se~qvNKQLnDKeRVaAAcENEqLL~v~~kml~tc 180 (181)
T COG5133 129 LPPRFHVQVHIKKGTHISERQVNKQLNDKERVAAACENEQLLDVMEKMLPTC 180 (181)
T ss_pred CCCceeEEEEEecCCcccHHHHhhhhchHHHHHHhhchHHHHHHHHhhhhcc
Confidence 4889999999999999999999999999999999999999999999999876
No 3
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=88.82 E-value=0.048 Score=36.97 Aligned_cols=13 Identities=62% Similarity=0.915 Sum_probs=10.8
Q ss_pred HHHhhhchHHHHH
Q 048261 23 SVNKQLNDKERIA 35 (56)
Q Consensus 23 ~vNKQLnDKERVa 35 (56)
.-||.||||||++
T Consensus 64 kaNKelNDKkRla 76 (138)
T PF05479_consen 64 KANKELNDKKRLA 76 (138)
T ss_dssp HSSSSSTTTSS-T
T ss_pred HhhhhhhhHHHhh
Confidence 5699999999987
No 4
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=86.03 E-value=0.34 Score=32.92 Aligned_cols=15 Identities=53% Similarity=0.831 Sum_probs=13.0
Q ss_pred HHHhhhchHHHHHHH
Q 048261 23 SVNKQLNDKERIAAA 37 (56)
Q Consensus 23 ~vNKQLnDKERVaAA 37 (56)
.-||.||||.|.+--
T Consensus 64 ~aNKeLNDKKRlATS 78 (139)
T PLN00054 64 KANKELNDKKRLATS 78 (139)
T ss_pred hhhhhhhhHHhhhhc
Confidence 579999999998754
No 5
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=64.78 E-value=5.5 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.4
Q ss_pred CcccceeEEEEecCCCCc
Q 048261 2 FTDILLQLDIKVAPGSHA 19 (56)
Q Consensus 2 ~~~~~fKvdV~I~~GsH~ 19 (56)
.++..|||+|.++||+-.
T Consensus 41 ~tdskYkv~V~~kP~~~~ 58 (161)
T PF15043_consen 41 LTDSKYKVDVTIKPPTVE 58 (161)
T ss_pred ecCCEEEEEEEEcCCcce
Confidence 367889999999999865
No 6
>PF08111 Pea-VEAacid: Pea-VEAacid family; InterPro: IPR012593 This family consists of the PEA-VEAacid neuropeptides family. These neuropeptides are isolated from the abdominal perisympathetic organs of the American cockroach. These peptides are found together with Pea-YLS-amide and Pea-SKNacid, giving a unique neuropeptide pattern in abdominal perisympathetic organs. The functions of these neuropeptides are unknown [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=62.55 E-value=2.7 Score=19.08 Aligned_cols=9 Identities=56% Similarity=1.099 Sum_probs=7.1
Q ss_pred EecCCCCcC
Q 048261 12 KVAPGSHAD 20 (56)
Q Consensus 12 ~I~~GsH~~ 20 (56)
.++||||..
T Consensus 2 tltpgshvd 10 (15)
T PF08111_consen 2 TLTPGSHVD 10 (15)
T ss_pred cccCccchh
Confidence 478999964
No 7
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=57.51 E-value=6.8 Score=21.78 Aligned_cols=17 Identities=59% Similarity=0.878 Sum_probs=13.3
Q ss_pred HHhc--CchHHHHHHHHhc
Q 048261 36 AALE--NPNLRQLVDECLY 52 (56)
Q Consensus 36 AAlE--N~~L~~~vn~cl~ 52 (56)
|++| ||+|++.+.+++.
T Consensus 23 a~~E~~np~lR~~l~~~~~ 41 (64)
T PF07875_consen 23 AALECANPELRQILQQILN 41 (64)
T ss_pred HHHHHCCHHHHHHHHHHHH
Confidence 5566 9999998887764
No 8
>PHA00360 II replication initiation protein
Probab=56.17 E-value=8.8 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.2
Q ss_pred CHHHHHhhhchHH------------HHHHHhcCchHHHHHHHH
Q 048261 20 DEESVNKQLNDKE------------RIAAALENPNLRQLVDEC 50 (56)
Q Consensus 20 ~e~~vNKQLnDKE------------RVaAAlEN~~L~~~vn~c 50 (56)
.-+++++||.++. |+.++|+||.|++--+..
T Consensus 200 K~~E~~~ql~~~~~kk~~~~~s~~~~~~~~l~~p~L~~fa~g~ 242 (421)
T PHA00360 200 KHHELQAQIKQLQKKKSAHLTIYEKECLEVLSNPDLLEFASGL 242 (421)
T ss_pred cHHHHHHHHHHHHhhhcccccchhhhhhHHhccHhHHHHhcCc
Confidence 4578999998888 788999999998874443
No 9
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=53.29 E-value=7 Score=24.07 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEecCCCCcCHH--HHHhhhchHHHHHHHhc
Q 048261 11 IKVAPGSHADEE--SVNKQLNDKERIAAALE 39 (56)
Q Consensus 11 V~I~~GsH~~e~--~vNKQLnDKERVaAAlE 39 (56)
|+|++||...=. ...|. |||||..-||
T Consensus 40 v~Vr~~s~n~lsv~g~~k~--dK~~i~eiLq 68 (81)
T PRK10597 40 VSVRYAAANNLSVIGATKE--DKDRISEILQ 68 (81)
T ss_pred EEEeecCCCceEecCCCcc--hHHHHHHHHH
Confidence 888888885533 23354 9999887765
No 10
>PRK00447 hypothetical protein; Provisional
Probab=46.08 E-value=11 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=16.9
Q ss_pred EEEEecCCCCcCHHHHHhhhchHHHHHHHhcC
Q 048261 9 LDIKVAPGSHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 9 vdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN 40 (56)
+.|+|.---|.+|+. |+|..|+.|
T Consensus 3 ~~I~v~a~v~~TED~--------eKV~~Ai~N 26 (144)
T PRK00447 3 VEVEVEAEVRPTEDE--------EKVKKAILN 26 (144)
T ss_pred EEEEEEEEEeCCCCH--------HHHHHHHHh
Confidence 344444446788855 999999986
No 11
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=42.22 E-value=14 Score=23.53 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=11.0
Q ss_pred hHHHHHHHhcCch
Q 048261 30 DKERIAAALENPN 42 (56)
Q Consensus 30 DKERVaAAlEN~~ 42 (56)
.+|||.+|++|..
T Consensus 25 sr~Rv~~al~~~g 37 (121)
T PF13541_consen 25 SRERVRSALKNSG 37 (121)
T ss_pred HHHHHHHHHHhcC
Confidence 6799999999843
No 12
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=42.01 E-value=19 Score=21.25 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=22.4
Q ss_pred ecCCCCcCHHHHHhhhchHHHHHHHhcCchHHH--HHHHH
Q 048261 13 VAPGSHADEESVNKQLNDKERIAAALENPNLRQ--LVDEC 50 (56)
Q Consensus 13 I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~--~vn~c 50 (56)
..||.+.+|.+||.-| ..-.++..++. +|+..
T Consensus 24 f~~g~~y~E~EVN~~L------~~~~~D~a~LRR~LVd~g 57 (71)
T PF09860_consen 24 FEPGREYSEKEVNEIL------KRFFDDYATLRRYLVDYG 57 (71)
T ss_pred CCCCCccCHHHHHHHH------HHHcccHHHHHHHHHHcC
Confidence 4799999999999554 44477776653 45443
No 13
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=40.70 E-value=14 Score=19.87 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=9.7
Q ss_pred hHHHHHHHhcC
Q 048261 30 DKERIAAALEN 40 (56)
Q Consensus 30 DKERVaAAlEN 40 (56)
|||||.+|--|
T Consensus 17 eK~rv~kAWRN 27 (34)
T PF13137_consen 17 EKYRVDKAWRN 27 (34)
T ss_pred HHHHHHHHHHH
Confidence 89999999766
No 14
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=38.21 E-value=13 Score=22.26 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=17.3
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
++++|.|-+..-++||.|++
T Consensus 69 ~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 69 DDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp TTSBHHHHHHHHHHSGGGB-
T ss_pred hhhhhHHHHHHHHhChhhee
Confidence 78999999999999999864
No 15
>PF01877 RNA_binding: RNA binding; InterPro: IPR002739 The proteins in this entry are functionally uncharacterised.; PDB: 2WNY_B 2NWU_A 2NRQ_A 2OGK_A 3D7A_B 3C9G_B 2PZZ_D.
Probab=37.93 E-value=22 Score=22.35 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=11.7
Q ss_pred CCcCHHHHHhhhchHHHHHHHhcC
Q 048261 17 SHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 17 sH~~e~~vNKQLnDKERVaAAlEN 40 (56)
-|.+|+. |+|.-||.|
T Consensus 9 v~~TED~--------eKV~~Al~n 24 (120)
T PF01877_consen 9 VHPTEDE--------EKVKKALSN 24 (120)
T ss_dssp E-TTB-H--------HHHHHHHHH
T ss_pred EcCCcCH--------HHHHHHHHH
Confidence 6777765 999999976
No 16
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=37.77 E-value=7.2 Score=22.76 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=16.9
Q ss_pred EEEEecCCCCcCHHHHHhhhchHHHHHHHhc
Q 048261 9 LDIKVAPGSHADEESVNKQLNDKERIAAALE 39 (56)
Q Consensus 9 vdV~I~~GsH~~e~~vNKQLnDKERVaAAlE 39 (56)
..|+|++||.+.=.-.--.-.|||||..-||
T Consensus 24 ~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLq 54 (65)
T PF06183_consen 24 AEVRVRPGSANGLSVSGGKKDDKERIEEILQ 54 (65)
T ss_dssp -EEEEEEESS-EEEEES--HHHHHHHHHHHH
T ss_pred ceEeeeecccCccccCCcCchHHHHHHHHHH
Confidence 5677778876543322233345899877665
No 17
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=36.68 E-value=5.2 Score=24.12 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.2
Q ss_pred chHHHHHHHhcCchHHHHHHHHh
Q 048261 29 NDKERIAAALENPNLRQLVDECL 51 (56)
Q Consensus 29 nDKERVaAAlEN~~L~~~vn~cl 51 (56)
.|.+-|++||.+...+++.+.++
T Consensus 49 ~d~~~I~~Al~~S~~ve~~~~~~ 71 (73)
T cd08038 49 TNVDLILEALKDSTEVEIVDQKI 71 (73)
T ss_pred CCHHHHHHHHHcCCeEEEeCCcc
Confidence 48999999999998888776665
No 18
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=36.67 E-value=43 Score=20.01 Aligned_cols=21 Identities=38% Similarity=0.289 Sum_probs=15.1
Q ss_pred chHHHHHHHhcCchHHHHHHH
Q 048261 29 NDKERIAAALENPNLRQLVDE 49 (56)
Q Consensus 29 nDKERVaAAlEN~~L~~~vn~ 49 (56)
.|+|++.|+.+|..-.....+
T Consensus 33 ~d~e~I~a~~~~~G~~~aa~~ 53 (84)
T cd08789 33 EDKERIQAAENNSGNIKAAWT 53 (84)
T ss_pred HHHHHHHHHHhcCChHHHHHH
Confidence 489999999888655554443
No 19
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=36.65 E-value=22 Score=21.07 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=10.8
Q ss_pred HHhhhchHHHHHHHhc
Q 048261 24 VNKQLNDKERIAAALE 39 (56)
Q Consensus 24 vNKQLnDKERVaAAlE 39 (56)
+.-..+|.+|+.||++
T Consensus 66 ~g~~~~d~~Ri~A~i~ 81 (94)
T PF14490_consen 66 LGIEPDDPRRIRAAIL 81 (94)
T ss_dssp TT--TT-HHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH
Confidence 4556789999999975
No 20
>PF15431 TMEM190: Transmembrane protein 190
Probab=36.31 E-value=12 Score=25.36 Aligned_cols=9 Identities=78% Similarity=1.117 Sum_probs=8.0
Q ss_pred HHHhcCchH
Q 048261 35 AAALENPNL 43 (56)
Q Consensus 35 aAAlEN~~L 43 (56)
.||+|||||
T Consensus 26 QAAie~PnL 34 (134)
T PF15431_consen 26 QAAIENPNL 34 (134)
T ss_pred ccccCCCcc
Confidence 589999997
No 21
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=36.06 E-value=41 Score=23.36 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=20.0
Q ss_pred HhhhchHHHHHHHhcCchHHHHHHH
Q 048261 25 NKQLNDKERIAAALENPNLRQLVDE 49 (56)
Q Consensus 25 NKQLnDKERVaAAlEN~~L~~~vn~ 49 (56)
-|+|..-=-+..+|+||+|+++|..
T Consensus 81 ~kal~ssseLrsll~dp~Lr~Li~s 105 (157)
T KOG2857|consen 81 LKALPSSSELRSLLEDPHLRNLIES 105 (157)
T ss_pred HHhccchHHHHHHHhCHHHHHHHHH
Confidence 3667777778889999999998764
No 22
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=35.92 E-value=19 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.6
Q ss_pred hhchHHHHHHHhcCchHHH
Q 048261 27 QLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 27 QLnDKERVaAAlEN~~L~~ 45 (56)
.++|.|.+.+-++||.|++
T Consensus 73 ~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 73 ELSLSELIRLISEHPSLLR 91 (115)
T ss_pred cCCHHHHHHHHHhChhhee
Confidence 5788999999999999975
No 23
>PF07914 DUF1679: Protein of unknown function (DUF1679); InterPro: IPR012877 This region is found in a number of Caenorhabditis elegans and Caenorhabditis briggsae proteins, in one case (Q19034 from SWISSPROT) as a repeat. In many of the family members, this region is associated with the CHK region described by SMART as being found in zinc finger-C4 and HLH domain-containing kinases. In fact, one member of this family (Q9GUC1 from SWISSPROT) is annotated as being a member of the nuclear hormone receptor family, and contains regions typical of such proteins (IPR000536 from INTERPRO, IPR008946 from INTERPRO, and IPR001628 from INTERPRO).
Probab=29.62 E-value=29 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCCcCHHHHHhhhchH
Q 048261 16 GSHADEESVNKQLNDK 31 (56)
Q Consensus 16 GsH~~e~~vNKQLnDK 31 (56)
|||.+++.|++.|.+.
T Consensus 10 ~Thvtw~dve~~l~~~ 25 (414)
T PF07914_consen 10 ETHVTWEDVEEALQEA 25 (414)
T ss_pred cCceeHHHHHHHHHHH
Confidence 6999999999888764
No 24
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=28.95 E-value=46 Score=20.49 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=15.7
Q ss_pred hHHHHHHHhcCchHHHHHHHHhccC
Q 048261 30 DKERIAAALENPNLRQLVDECLYSC 54 (56)
Q Consensus 30 DKERVaAAlEN~~L~~~vn~cl~~~ 54 (56)
+.|+|-++|.||+.+ -.|+.++
T Consensus 8 ~~~~vw~~l~D~~~l---~~ciPG~ 29 (140)
T PF06240_consen 8 PPEKVWAFLSDPENL---ARCIPGV 29 (140)
T ss_dssp -HHHHHHHHT-HHHH---HHHSTTE
T ss_pred CHHHHHHHhcCHHHH---HhhCCCc
Confidence 579999999998755 6787654
No 25
>PRK09862 putative ATP-dependent protease; Provisional
Probab=28.61 E-value=24 Score=27.51 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=11.2
Q ss_pred HHHHHHHhcCchH
Q 048261 31 KERIAAALENPNL 43 (56)
Q Consensus 31 KERVaAAlEN~~L 43 (56)
||||.+||-|..+
T Consensus 46 ~eRvr~Al~n~g~ 58 (506)
T PRK09862 46 RDRVRSAIINSGY 58 (506)
T ss_pred HHHHHHHHHhCCC
Confidence 6999999998754
No 26
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=28.59 E-value=22 Score=22.34 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.5
Q ss_pred hhchHHHHHHHhcCchHHH
Q 048261 27 QLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 27 QLnDKERVaAAlEN~~L~~ 45 (56)
++++.|.+.+-++||.|++
T Consensus 73 ~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 73 SLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred cCCHHHHHHHHHhCcceEe
Confidence 6788999999999999875
No 27
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=27.84 E-value=25 Score=21.86 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.9
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
..++|.|.+.+-++||.|++
T Consensus 70 ~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 70 EALDEEEALALMIADPLLIR 89 (113)
T ss_pred cCCCHHHHHHHHHhCcceee
Confidence 45788999999999999875
No 28
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=27.70 E-value=32 Score=18.66 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=13.3
Q ss_pred HHHhhhchHHHHHHHhc
Q 048261 23 SVNKQLNDKERIAAALE 39 (56)
Q Consensus 23 ~vNKQLnDKERVaAAlE 39 (56)
.-||.+.|.|+|..+++
T Consensus 35 r~~~~~td~~~i~~~l~ 51 (61)
T PF13232_consen 35 RRNKNVTDPEKIAKLLK 51 (61)
T ss_pred HHcCCCCCHHHHHHHHH
Confidence 35778889988888776
No 29
>PF13027 DUF3888: Protein of unknown function (DUF3888)
Probab=27.49 E-value=56 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=13.1
Q ss_pred ccceeEEEEecC--CCCc
Q 048261 4 DILLQLDIKVAP--GSHA 19 (56)
Q Consensus 4 ~~~fKvdV~I~~--GsH~ 19 (56)
-.+|+|.|+|+| |.|.
T Consensus 45 ~~~f~vti~v~~~~g~h~ 62 (88)
T PF13027_consen 45 GFNFEVTIEVTTYEGAHN 62 (88)
T ss_pred cEEEEEEEEEEeccCCcC
Confidence 346899999988 9997
No 30
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=27.35 E-value=25 Score=24.04 Aligned_cols=16 Identities=50% Similarity=0.731 Sum_probs=14.0
Q ss_pred CCcCHHHHHhhhchHHHHHHHhcC
Q 048261 17 SHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 17 sH~~e~~vNKQLnDKERVaAAlEN 40 (56)
-|++|+. |||.-||+|
T Consensus 16 iHaTED~--------~kV~eAL~~ 31 (149)
T COG1325 16 IHATEDE--------EKVLEALEN 31 (149)
T ss_pred EEccCCH--------HHHHHHHHH
Confidence 5889876 999999987
No 31
>PF05144 Phage_CRI: Phage replication protein CRI ; InterPro: IPR022686 The sequences matched by this entry represent a family of phage and plasmid replication proteins. In bacteriophage IKe and related phage, the full-length protein is designated gene II protein. A much shorter protein of unknown function, translated from a conserved in-frame alternative initiator, is designated gene X protein. Members of this family also include plasmid replication proteins. ; GO: 0006260 DNA replication
Probab=27.33 E-value=76 Score=22.95 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=25.6
Q ss_pred CHHHHHhhhch------------HHHHHHHhcCchHHHHHHHHh
Q 048261 20 DEESVNKQLND------------KERIAAALENPNLRQLVDECL 51 (56)
Q Consensus 20 ~e~~vNKQLnD------------KERVaAAlEN~~L~~~vn~cl 51 (56)
.-+++.+|+.+ ..|+.++|.+|.|.+.-+..|
T Consensus 195 K~~E~~~~~~~l~~~~~k~~~~~~~~~~~~l~~~~L~~~A~~~L 238 (271)
T PF05144_consen 195 KGDEFQHQLKKLKKKARKGDSSSFHRVIDELSDPKLQEWADNLL 238 (271)
T ss_pred CHHHHHHHHHHHHHhhhccccHHhhhhHHHhccHhHHHHHHhhh
Confidence 35688888877 478999999999998866654
No 32
>PF08998 Epsilon_antitox: Bacterial epsilon antitoxin; InterPro: IPR015090 The epsilon antitoxin, produced by various prokaryotes, forms part of a post-segregational killing system, which is involved in the initiation of programmed cell death of plasmid-free cells. The protein is folded into a three-helix bundle that directly interacts with the zeta toxin, inactivating it []. ; GO: 0015643 toxin binding, 0009636 response to toxin, 0031342 negative regulation of cell killing; PDB: 1GVN_C 3Q8X_C.
Probab=26.97 E-value=21 Score=22.74 Aligned_cols=18 Identities=39% Similarity=0.531 Sum_probs=7.5
Q ss_pred CcCHHHHH---hhhchHHHHH
Q 048261 18 HADEESVN---KQLNDKERIA 35 (56)
Q Consensus 18 H~~e~~vN---KQLnDKERVa 35 (56)
|.-|.++| ||+.+||.||
T Consensus 69 ~~Yw~~mn~y~ksi~tK~kva 89 (89)
T PF08998_consen 69 HEYWRSMNNYIKSITTKEKVA 89 (89)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhccchhccC
Confidence 44455555 7888888875
No 33
>PF11923 DUF3441: Domain of unknown function (DUF3441); InterPro: IPR021846 This presumed domain is functionally uncharacterised. This domain is found in archaea and eukaryotes. This domain is typically between 104 to 119 amino acids in length. This domain is found associated with PF05833 from PFAM, PF05670 from PFAM. This domain has two conserved residues (P and G) that may be functionally important.
Probab=26.87 E-value=41 Score=21.36 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=11.7
Q ss_pred cceeEEEEecCCCC
Q 048261 5 ILLQLDIKVAPGSH 18 (56)
Q Consensus 5 ~~fKvdV~I~~GsH 18 (56)
.+||-.|+|+||+=
T Consensus 42 ~~yKYkvKl~PG~~ 55 (112)
T PF11923_consen 42 SKYKYKVKLQPGNA 55 (112)
T ss_pred hhCceeEEEcCCCc
Confidence 47889999999964
No 34
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=26.80 E-value=58 Score=20.68 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.4
Q ss_pred hHHHHHHHhcCchHHHHHHH
Q 048261 30 DKERIAAALENPNLRQLVDE 49 (56)
Q Consensus 30 DKERVaAAlEN~~L~~~vn~ 49 (56)
||||.|||.-=..-+.||.+
T Consensus 23 EeER~AaAsAA~EAMaMI~R 42 (94)
T PF04576_consen 23 EEERSAAASAASEAMAMILR 42 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999876666666654
No 35
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=26.14 E-value=61 Score=20.10 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=22.7
Q ss_pred EEEecCCCCcCHHHHHhhhchHHH--HHHHh
Q 048261 10 DIKVAPGSHADEESVNKQLNDKER--IAAAL 38 (56)
Q Consensus 10 dV~I~~GsH~~e~~vNKQLnDKER--VaAAl 38 (56)
-|.|..|.++...+..+=.++++| +|.|+
T Consensus 139 avliE~gfi~n~~D~~~l~~~~~~~~~A~ai 169 (175)
T PF01520_consen 139 AVLIELGFIDNPEDAKKLNDPKFQQKIAEAI 169 (175)
T ss_dssp EEEEEEEETTSHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEEEeccCCCHHHHHHhCCHHHHHHHHHHH
Confidence 367888999999988777777777 77765
No 36
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=25.89 E-value=25 Score=21.16 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=6.3
Q ss_pred CCcCHHHHHhhhch
Q 048261 17 SHADEESVNKQLND 30 (56)
Q Consensus 17 sH~~e~~vNKQLnD 30 (56)
++.++-.+|+||++
T Consensus 50 aw~qD~~~NrqLd~ 63 (65)
T PF14835_consen 50 AWIQDIQINRQLDS 63 (65)
T ss_dssp -S-SS----HHHHH
T ss_pred HHHHHHHhhhhhhc
Confidence 46677889999975
No 37
>PHA02663 hypothetical protein; Provisional
Probab=25.51 E-value=55 Score=22.80 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.9
Q ss_pred HHHHHhhhchHHHHH
Q 048261 21 EESVNKQLNDKERIA 35 (56)
Q Consensus 21 e~~vNKQLnDKERVa 35 (56)
..+|-.||+|.||++
T Consensus 22 a~av~e~lt~~er~a 36 (172)
T PHA02663 22 AAAVEEQLTPREREA 36 (172)
T ss_pred HHHHHHhcCHHHHHH
Confidence 357889999999986
No 38
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.47 E-value=69 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.2
Q ss_pred HHHHHhhhchHH-HHHHHhcCchHHHHHHHH
Q 048261 21 EESVNKQLNDKE-RIAAALENPNLRQLVDEC 50 (56)
Q Consensus 21 e~~vNKQLnDKE-RVaAAlEN~~L~~~vn~c 50 (56)
-+.++++.++|+ ||.+||-|.++.++|+.|
T Consensus 535 ~~~Y~~k~~~k~s~li~a~v~~d~~~~ve~~ 565 (1049)
T KOG0307|consen 535 RDKYLAKSNSKLSRLIYAMVNRDLDDYVETC 565 (1049)
T ss_pred HHHHHHHhCChHHHHHHHHHhhhHHHHHhhc
Confidence 357788888887 999999999999999987
No 39
>PRK14555 hypothetical protein; Provisional
Probab=25.32 E-value=29 Score=22.90 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.4
Q ss_pred CCcCHHHHHhhhchHHHHHHHhcC
Q 048261 17 SHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 17 sH~~e~~vNKQLnDKERVaAAlEN 40 (56)
.|.+|+. |||..||+|
T Consensus 11 vhaTED~--------eKV~~Al~n 26 (145)
T PRK14555 11 CHATEDE--------DKVLEALRN 26 (145)
T ss_pred EecccCH--------HHHHHHHHH
Confidence 6888855 999999986
No 40
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=25.14 E-value=39 Score=22.59 Aligned_cols=13 Identities=54% Similarity=0.703 Sum_probs=10.8
Q ss_pred HHHhhhchHHHHH
Q 048261 23 SVNKQLNDKERIA 35 (56)
Q Consensus 23 ~vNKQLnDKERVa 35 (56)
+-||.-|||||+-
T Consensus 69 eeNKakndkERLD 81 (122)
T PLN00078 69 EENKEKNDKERLD 81 (122)
T ss_pred HHhHHHhHHHHHH
Confidence 4589999999974
No 41
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=24.88 E-value=32 Score=20.20 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=15.9
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
+.+++.|-+.+-++||.|++
T Consensus 72 ~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 72 DELSDEEALELMAEHPKLIK 91 (105)
T ss_pred cCCCHHHHHHHHHhCcCeee
Confidence 45778888888889998864
No 42
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=24.53 E-value=33 Score=26.54 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=11.4
Q ss_pred HHHHHHHhcCchH
Q 048261 31 KERIAAALENPNL 43 (56)
Q Consensus 31 KERVaAAlEN~~L 43 (56)
||||.||+.|..+
T Consensus 41 ~erVr~al~n~g~ 53 (499)
T TIGR00368 41 RERVKSAIKNSGF 53 (499)
T ss_pred HHHHHHHHHhcCC
Confidence 6999999999765
No 43
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=24.43 E-value=45 Score=20.43 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=18.9
Q ss_pred ecCCCCcCHHHHHhhhchHHHHHHHhc
Q 048261 13 VAPGSHADEESVNKQLNDKERIAAALE 39 (56)
Q Consensus 13 I~~GsH~~e~~vNKQLnDKERVaAAlE 39 (56)
+.+..+..+..+|+++ |++|-+++|-
T Consensus 34 V~~dYY~~g~~y~~~i-~~~~~a~~lg 59 (146)
T PF05751_consen 34 VVDDYYEKGLAYNQDI-DRERAAEALG 59 (146)
T ss_pred eeccHHHhhhhhhhhh-HHHHHHHhcC
Confidence 4566777888999998 5666666654
No 44
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=24.06 E-value=34 Score=21.68 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=16.9
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
+++++.|-+.+-++||.|++
T Consensus 72 ~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 72 EELSVNEVIDLIQENPRILK 91 (132)
T ss_pred hcCCHHHHHHHHHhCcccee
Confidence 47888899999999999875
No 45
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=22.71 E-value=41 Score=20.92 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=6.3
Q ss_pred hchHHHHHHHh
Q 048261 28 LNDKERIAAAL 38 (56)
Q Consensus 28 LnDKERVaAAl 38 (56)
|+|.|||...|
T Consensus 76 ls~~~~vl~~l 86 (87)
T TIGR02654 76 LSDRERVLIGL 86 (87)
T ss_pred ccchHHHHhcc
Confidence 55666665544
No 46
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=22.08 E-value=96 Score=19.47 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=13.9
Q ss_pred hHHHHHHHhcCchHHHHHH
Q 048261 30 DKERIAAALENPNLRQLVD 48 (56)
Q Consensus 30 DKERVaAAlEN~~L~~~vn 48 (56)
|||||.|..+|..-.....
T Consensus 35 ~ke~I~a~~~~~Gn~~AA~ 53 (88)
T cd08818 35 VKERIRAAAATRGNIAAAE 53 (88)
T ss_pred HHHHHHHHHHccCcHHHHH
Confidence 6899999998776555443
No 47
>PF13954 PapC_N: PapC N-terminal domain; PDB: 2VQI_B 3FIP_A 3RFZ_E 3OHN_A 1ZDV_A 1ZE3_D 3BWU_D 1ZDX_A.
Probab=21.94 E-value=72 Score=20.09 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=8.8
Q ss_pred CcccceeEEEEec
Q 048261 2 FTDILLQLDIKVA 14 (56)
Q Consensus 2 ~~~~~fKvdV~I~ 14 (56)
+.|+.|.|+|.|-
T Consensus 27 ~~pG~Y~vdv~vN 39 (146)
T PF13954_consen 27 IPPGEYSVDVYVN 39 (146)
T ss_dssp S-SEEEEEEEEET
T ss_pred CCCeEEEEEEEEC
Confidence 4678888888763
No 48
>PF08125 Mannitol_dh_C: Mannitol dehydrogenase C-terminal domain; InterPro: IPR013118 Long-chain mannitol dehydrogenases are a group of secondary alcohol dehydrogenases that differ from other alcohol or polyol dehydrogenases in that they do not utilise Zn(2+) or other metal cofactors and do not contain a conserved catalytic tyrosine residue. The proteins in this family that have been studied are monomeric enzymes of ~54 kDa and include: Mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) [] Mannitol 2-dehydrogenase (1.1.1.67 from EC) [] D-arabinitol 4-dehydrogenase (1.1.1.11 from EC) [] Altronate oxidoreductase (1.1.1.58 from EC) D-mannonate oxidoreductase (1.1.1.57 from EC) These enzymes are mostly found in bacteria, though they are also present in some fungal species. This entry represents the C-terminal substrate-binding domain of long-chain mannitol dehydrogenases. This domain is primarily alpha-helical in nature, being composed of eleven helices and a small beta hairpin []. Most of the residues implicated in substrate binding are located within this region, and a conserved lysine residue is thought to act as a proton acceptor during catalysis.; GO: 0016491 oxidoreductase activity, 0050662 coenzyme binding, 0055114 oxidation-reduction process; PDB: 3H2Z_A 1M2W_A 1LJ8_A.
Probab=21.81 E-value=77 Score=21.74 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.6
Q ss_pred hhhchHHHHHHHhcCchHHHHHHHHhc
Q 048261 26 KQLNDKERIAAALENPNLRQLVDECLY 52 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~~vn~cl~ 52 (56)
=+|...|-|..||++|.+...|++.+.
T Consensus 90 G~l~G~~tV~ea~~d~~i~~~v~~~~~ 116 (245)
T PF08125_consen 90 GYLAGYETVHEAMADPEIRAFVRRLME 116 (245)
T ss_dssp HHHCT--BHHHHHTSHHHHHHHHHHHH
T ss_pred HHhcCccChHHhhCchHHHHHHHHHHH
Confidence 357788999999999999999998864
No 49
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=21.18 E-value=89 Score=19.22 Aligned_cols=16 Identities=44% Similarity=0.960 Sum_probs=11.7
Q ss_pred CcccceeEEEEecCCC
Q 048261 2 FTDILLQLDIKVAPGS 17 (56)
Q Consensus 2 ~~~~~fKvdV~I~~Gs 17 (56)
|++..|.+|+++.+|.
T Consensus 52 ~~df~l~~d~k~~~~~ 67 (185)
T PF06439_consen 52 FSDFELEVDFKITPGG 67 (185)
T ss_dssp BSSEEEEEEEEE-TT-
T ss_pred cccEEEEEEEEECCCC
Confidence 6788889999987765
No 50
>PRK12559 transcriptional regulator Spx; Provisional
Probab=20.99 E-value=36 Score=21.59 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.4
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
+.+++.|-+.+-++||.|++
T Consensus 72 ~~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 72 EELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred ccCCHHHHHHHHHhCcceEe
Confidence 46778889999999998875
No 51
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=20.03 E-value=78 Score=18.59 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=12.4
Q ss_pred cccceeEEEEecCCC
Q 048261 3 TDILLQLDIKVAPGS 17 (56)
Q Consensus 3 ~~~~fKvdV~I~~Gs 17 (56)
+.++|.+.|.+++|.
T Consensus 64 ~~i~y~l~i~~kDgk 78 (91)
T PF14730_consen 64 TRINYTLIIDCKDGK 78 (91)
T ss_pred eEEEEEEEEEEECCE
Confidence 567899999999884
Done!