Query 048261
Match_columns 56
No_of_seqs 104 out of 186
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 13:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ux2_A MIP18 family protein FA 100.0 2.5E-30 8.4E-35 168.5 2.2 50 3-52 81-130 (130)
2 2llw_A Heat shock protein STI1 81.9 1.5 5.1E-05 25.2 3.1 31 21-52 10-40 (71)
3 2lnm_A Protein TIC 40, chlorop 78.1 3.2 0.00011 22.6 3.6 32 21-53 2-33 (62)
4 2f4e_A ATFKBP42; FKBP-like, al 53.7 7.9 0.00027 24.5 2.2 32 3-37 147-179 (180)
5 3lw5_N Photosystem I-N subunit 51.6 0.66 2.3E-05 28.4 -3.0 14 23-36 11-24 (85)
6 3d7a_A UPF0201 protein PH1010; 46.0 4 0.00014 25.6 -0.1 21 12-40 9-29 (138)
7 2nrq_A Hypothetical protein OR 43.1 9 0.00031 24.7 1.2 16 17-40 14-29 (159)
8 2wsc_N PSAN, PSI-N, photosyste 41.5 1.2 4.1E-05 30.1 -3.2 13 23-35 96-108 (170)
9 2wny_A MTH_689, conserved prot 41.4 11 0.00037 23.7 1.4 23 11-41 11-33 (141)
10 3c9g_A UPF0200/UPF0201 protein 40.5 7.9 0.00027 24.5 0.6 24 9-40 8-31 (142)
11 2nwu_A UPF0201 protein SSO1042 36.2 9.7 0.00033 24.6 0.5 24 10-41 5-28 (155)
12 3bwu_D FIMD, outer membrane us 35.4 20 0.0007 21.0 1.9 13 2-14 28-40 (125)
13 2pzz_A UPF0201 protein MJ1564; 35.1 7.3 0.00025 24.8 -0.2 22 11-40 4-25 (147)
14 2ogk_A Hypothetical protein; a 33.4 14 0.00047 23.3 0.9 24 10-41 8-31 (146)
15 2az0_A B2 protein; protein-RNA 32.0 13 0.00044 22.1 0.6 14 27-40 58-71 (73)
16 4gmq_A Putative ribosome assoc 30.8 42 0.0014 20.9 2.8 33 18-50 35-67 (103)
17 3g80_A Protein B2; RNA-binding 29.7 14 0.00049 22.9 0.5 14 28-41 83-96 (97)
18 4ay7_A Methylcobalamin\: coenz 29.0 20 0.0007 24.1 1.2 15 27-41 12-26 (348)
19 1zxa_A CGMP-dependent protein 28.9 30 0.001 19.9 1.7 36 15-50 6-51 (67)
20 1r73_A TM1492, 50S ribosomal p 28.6 79 0.0027 17.4 3.5 33 20-52 10-51 (66)
21 4b0m_A F1 capsule-anchoring pr 27.9 30 0.001 21.1 1.7 12 3-14 28-39 (136)
22 2cp8_A NEXT to BRCA1 gene 1 pr 27.9 69 0.0023 17.5 3.1 25 29-53 22-48 (54)
23 2llv_A Heat shock protein STI1 27.1 28 0.00096 19.3 1.4 26 27-52 18-43 (71)
24 3v2d_2 50S ribosomal protein L 26.8 90 0.0031 17.5 3.6 33 20-52 17-58 (72)
25 1ghh_A DINI, DNA-damage-induci 26.3 8.3 0.00028 22.8 -1.0 27 10-39 39-68 (81)
26 4h22_A Leucine-rich repeat fli 25.9 14 0.00049 23.0 0.0 10 32-41 90-99 (103)
27 1or7_C Sigma-E factor negative 25.7 26 0.00088 20.6 1.1 14 31-44 56-69 (90)
28 4a53_A EDC3; RNA binding prote 25.0 28 0.00096 22.3 1.3 17 5-21 11-27 (125)
29 2zjr_V 50S ribosomal protein L 24.8 95 0.0033 17.1 3.5 33 20-52 10-51 (67)
30 3dqg_A Heat shock 70 kDa prote 23.5 1.2E+02 0.0041 18.6 4.0 28 9-36 108-135 (151)
31 3k3c_A Protein RV1364C/MT1410; 21.1 30 0.001 18.6 0.7 25 16-40 1-25 (158)
No 1
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.96 E-value=2.5e-30 Score=168.46 Aligned_cols=50 Identities=50% Similarity=0.890 Sum_probs=42.0
Q ss_pred cccceeEEEEecCCCCcCHHHHHhhhchHHHHHHHhcCchHHHHHHHHhc
Q 048261 3 TDILLQLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLY 52 (56)
Q Consensus 3 ~~~~fKvdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~ 52 (56)
-|.+|||+|+|+||||++|++|||||||||||||||||++|+++|++||.
T Consensus 81 lp~~~kV~v~I~pgtH~~e~~vnKQl~DKERvaAAlEn~~l~~~v~~c~~ 130 (130)
T 3ux2_A 81 LPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL 130 (130)
T ss_dssp CSSCCCCCCCCCCC------CHHHHHHCHHHHHHHHHSHHHHHHHHHHHC
T ss_pred CCCceEEEEEECCCCCcCHHHHHHhhhhHHHHHHHhcCHHHHHHHHHHcC
Confidence 37899999999999999999999999999999999999999999999983
No 2
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=81.93 E-value=1.5 Score=25.17 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=25.9
Q ss_pred HHHHHhhhchHHHHHHHhcCchHHHHHHHHhc
Q 048261 21 EESVNKQLNDKERIAAALENPNLRQLVDECLY 52 (56)
Q Consensus 21 e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~ 52 (56)
|+.+++=++|-| |.++|-||....++..|..
T Consensus 10 ee~~~~~m~dPE-i~~im~DP~~~~~lq~~~~ 40 (71)
T 2llw_A 10 EETYQRAMKDPE-VAAIMQDPVMQSILQQAQQ 40 (71)
T ss_dssp HHHHHHHHHSHH-HHHHHTCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCHH-HHHHhCCHHHHHHHHHHHH
Confidence 667888899987 8999999999988887754
No 3
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=78.06 E-value=3.2 Score=22.62 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=25.0
Q ss_pred HHHHHhhhchHHHHHHHhcCchHHHHHHHHhcc
Q 048261 21 EESVNKQLNDKERIAAALENPNLRQLVDECLYS 53 (56)
Q Consensus 21 e~~vNKQLnDKERVaAAlEN~~L~~~vn~cl~~ 53 (56)
|+-++|=++|-| ++++|.||.++.++.++.+.
T Consensus 2 ~e~~~kl~~dPe-~~~~m~dP~~~~~lq~i~~N 33 (62)
T 2lnm_A 2 EEVISKIMENPD-VAMAFQNPRVQAALMECSEN 33 (62)
T ss_dssp HHHHHHHTTSHH-HHHHTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHcChH-HHHHcCCHHHHHHHHHHHHC
Confidence 556778888865 89999999999888877543
No 4
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=53.72 E-value=7.9 Score=24.51 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=9.6
Q ss_pred cccceeEEEE-ecCCCCcCHHHHHhhhchHHHHHHH
Q 048261 3 TDILLQLDIK-VAPGSHADEESVNKQLNDKERIAAA 37 (56)
Q Consensus 3 ~~~~fKvdV~-I~~GsH~~e~~vNKQLnDKERVaAA 37 (56)
+++.|.|++. |.+... ..---+|++.||+.+|
T Consensus 147 s~l~F~VeL~~v~~~~e---~~~~~~mt~eErl~~A 179 (180)
T 2f4e_A 147 ADLLYEVEVIGFDETKE---GKARSDMTVEERIGAA 179 (180)
T ss_dssp CCEEEEEEEEEESCBCC---C---------------
T ss_pred CeEEEEEEEEEEecCcc---ccccccCCHHHHHhhc
Confidence 4567777765 554443 2222389999999987
No 5
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=51.62 E-value=0.66 Score=28.44 Aligned_cols=14 Identities=57% Similarity=0.862 Sum_probs=11.6
Q ss_pred HHHhhhchHHHHHH
Q 048261 23 SVNKQLNDKERIAA 36 (56)
Q Consensus 23 ~vNKQLnDKERVaA 36 (56)
+-||.||||-|.+-
T Consensus 11 ~aNKeLnDkKRlaT 24 (85)
T 3lw5_N 11 KTNKELNDKKRLAT 24 (85)
T ss_dssp CCCSTTCCCSSCCS
T ss_pred hhhhhhhhHHHhhh
Confidence 46999999999763
No 6
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=46.04 E-value=4 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=14.7
Q ss_pred EecCCCCcCHHHHHhhhchHHHHHHHhcC
Q 048261 12 KVAPGSHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 12 ~I~~GsH~~e~~vNKQLnDKERVaAAlEN 40 (56)
+|.---|.+|+. |||..||+|
T Consensus 9 ~i~a~v~~TED~--------eKV~~Al~n 29 (138)
T 3d7a_A 9 EVEAYVYPTEDI--------RKVKKAMLN 29 (138)
T ss_dssp EEEEEECTTBCH--------HHHHHHHHH
T ss_pred EEEEEEeCCCCH--------HHHHHHHHH
Confidence 333336788855 999999876
No 7
>2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=43.13 E-value=9 Score=24.70 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.5
Q ss_pred CCcCHHHHHhhhchHHHHHHHhcC
Q 048261 17 SHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 17 sH~~e~~vNKQLnDKERVaAAlEN 40 (56)
.|.+|+. |||..||+|
T Consensus 14 vh~TED~--------eKV~~Al~n 29 (159)
T 2nrq_A 14 IHETEDY--------NKIVNTIES 29 (159)
T ss_dssp ECTTSCH--------HHHHHHHHH
T ss_pred EecCcCH--------HHHHHHHHH
Confidence 6888855 999999987
No 8
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=41.52 E-value=1.2 Score=30.09 Aligned_cols=13 Identities=62% Similarity=0.912 Sum_probs=11.1
Q ss_pred HHHhhhchHHHHH
Q 048261 23 SVNKQLNDKERIA 35 (56)
Q Consensus 23 ~vNKQLnDKERVa 35 (56)
.-||.||||-|.+
T Consensus 96 ~aNKeLNDKKRlA 108 (170)
T 2wsc_N 96 KTNKELNDKKRLA 108 (170)
T ss_dssp CSCSSSCCCSSCC
T ss_pred hhhhhhhhhHhhh
Confidence 4699999999975
No 9
>2wny_A MTH_689, conserved protein MTH689; unknown function, exosome superoperon; 1.95A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=41.42 E-value=11 Score=23.72 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=16.7
Q ss_pred EEecCCCCcCHHHHHhhhchHHHHHHHhcCc
Q 048261 11 IKVAPGSHADEESVNKQLNDKERIAAALENP 41 (56)
Q Consensus 11 V~I~~GsH~~e~~vNKQLnDKERVaAAlEN~ 41 (56)
|+|.--.|.+|+. |||..||+|=
T Consensus 11 V~i~a~v~~TED~--------eKV~~Al~ni 33 (141)
T 2wny_A 11 ISYCLMVYGTEDE--------EKVIEALRNV 33 (141)
T ss_dssp EEEEEEECTTSCH--------HHHHHHHTTT
T ss_pred EEEEEEEcCCCCH--------HHHHHHHHHh
Confidence 3334347888865 9999999984
No 10
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein AF_135, structural genomics, PSI-II, dimer; 2.30A {Archaeoglobus fulgidus dsm 4304}
Probab=40.46 E-value=7.9 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=18.5
Q ss_pred EEEEecCCCCcCHHHHHhhhchHHHHHHHhcC
Q 048261 9 LDIKVAPGSHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 9 vdV~I~~GsH~~e~~vNKQLnDKERVaAAlEN 40 (56)
+.|+|.---|.+|+. |||..||+|
T Consensus 8 ~~I~i~a~v~~TED~--------eKV~~Al~n 31 (142)
T 3c9g_A 8 VEIEIRTKIHPTESE--------DKVLKAIRN 31 (142)
T ss_dssp EEEEEEEECCTTBCH--------HHHHHHHHH
T ss_pred eEEEEEEEEeCCCCH--------HHHHHHHHH
Confidence 455555558889865 999999987
No 11
>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, sulfolobus solfataricus P2, structural genomics, PSI-2; 2.40A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=36.19 E-value=9.7 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=16.6
Q ss_pred EEEecCCCCcCHHHHHhhhchHHHHHHHhcCc
Q 048261 10 DIKVAPGSHADEESVNKQLNDKERIAAALENP 41 (56)
Q Consensus 10 dV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~ 41 (56)
.|++.--.|.+|+. |||..|+.|=
T Consensus 5 ~I~v~a~V~~TED~--------eKV~~Ai~Ni 28 (155)
T 2nwu_A 5 KVMVVAEVRPSEDV--------NKVLSAISNF 28 (155)
T ss_dssp EEEEEEEECTTBCH--------HHHHHHHHTT
T ss_pred EEEEEEEEeCCCCH--------HHHHHHHHHh
Confidence 34444446777755 9999999883
No 12
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=35.44 E-value=20 Score=21.04 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=10.2
Q ss_pred CcccceeEEEEec
Q 048261 2 FTDILLQLDIKVA 14 (56)
Q Consensus 2 ~~~~~fKvdV~I~ 14 (56)
+.|+.|.|+|+|-
T Consensus 28 ~~PG~Y~vdI~vN 40 (125)
T 3bwu_D 28 LPPGTYRVDIYLN 40 (125)
T ss_dssp SCSEEEEEEEEET
T ss_pred cCCcEEEEEEEEC
Confidence 4688898888864
No 13
>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
Probab=35.13 E-value=7.3 Score=24.83 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=15.3
Q ss_pred EEecCCCCcCHHHHHhhhchHHHHHHHhcC
Q 048261 11 IKVAPGSHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 11 V~I~~GsH~~e~~vNKQLnDKERVaAAlEN 40 (56)
|+|.--.|.+|+. |||..||+|
T Consensus 4 I~i~a~V~~TED~--------eKV~~Al~n 25 (147)
T 2pzz_A 4 VIIKAKVKPTEDK--------YKVKKAILN 25 (147)
T ss_dssp EEEEEEECTTBCH--------HHHHHHHHH
T ss_pred EEEEEEEeCCCCH--------HHHHHHHHH
Confidence 3333336778755 999999986
No 14
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=33.43 E-value=14 Score=23.30 Aligned_cols=24 Identities=21% Similarity=0.388 Sum_probs=17.2
Q ss_pred EEEecCCCCcCHHHHHhhhchHHHHHHHhcCc
Q 048261 10 DIKVAPGSHADEESVNKQLNDKERIAAALENP 41 (56)
Q Consensus 10 dV~I~~GsH~~e~~vNKQLnDKERVaAAlEN~ 41 (56)
.|+|.---|.+|+. |||..||+|=
T Consensus 8 ~I~i~a~v~~TED~--------eKV~~Al~ni 31 (146)
T 2ogk_A 8 WVRVSAVVHSTEDR--------EKVGEAISTL 31 (146)
T ss_dssp EEEEEEEECTTSCH--------HHHHHHHGGG
T ss_pred EEEEEEEEcCCCCH--------HHHHHHHHHh
Confidence 34444447888865 9999999873
No 15
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=31.96 E-value=13 Score=22.11 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=11.5
Q ss_pred hhchHHHHHHHhcC
Q 048261 27 QLNDKERIAAALEN 40 (56)
Q Consensus 27 QLnDKERVaAAlEN 40 (56)
-|=+|=||+|+||-
T Consensus 58 sLL~KprvaA~L~G 71 (73)
T 2az0_A 58 SLLEKPSVVAYLEG 71 (73)
T ss_dssp HHTTCHHHHHHHHC
T ss_pred HHhhhHHHHHHhcC
Confidence 36689999999984
No 16
>4gmq_A Putative ribosome associated protein; ribosome binding, CO-translational chaperone, ribosome-bindi protein; 1.30A {Chaetomium thermophilum var}
Probab=30.79 E-value=42 Score=20.87 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=28.2
Q ss_pred CcCHHHHHhhhchHHHHHHHhcCchHHHHHHHH
Q 048261 18 HADEESVNKQLNDKERIAAALENPNLRQLVDEC 50 (56)
Q Consensus 18 H~~e~~vNKQLnDKERVaAAlEN~~L~~~vn~c 50 (56)
=.+...|..||+|=|=+...|++.+|-.+-.++
T Consensus 35 a~~aa~ID~vL~dvdli~~kld~eeLa~lA~kl 67 (103)
T 4gmq_A 35 EASAATIDAVLNDVDLVITKIDADEIAALAGKL 67 (103)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhHHHHHHhcCHHHHHHHHHHH
Confidence 455678999999999999999999998876554
No 17
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=29.75 E-value=14 Score=22.92 Aligned_cols=14 Identities=50% Similarity=0.458 Sum_probs=11.4
Q ss_pred hchHHHHHHHhcCc
Q 048261 28 LNDKERIAAALENP 41 (56)
Q Consensus 28 LnDKERVaAAlEN~ 41 (56)
|=+|=||+|||+-+
T Consensus 83 LL~KprVaA~L~Ge 96 (97)
T 3g80_A 83 LLIKPRVAAALRGE 96 (97)
T ss_dssp HHTSHHHHHHHTTC
T ss_pred HhhhHHHHHHHhcC
Confidence 55899999999853
No 18
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=29.03 E-value=20 Score=24.11 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.6
Q ss_pred hhchHHHHHHHhcCc
Q 048261 27 QLNDKERIAAALENP 41 (56)
Q Consensus 27 QLnDKERVaAAlEN~ 41 (56)
+++-|||+.+||...
T Consensus 12 ~MT~kER~l~al~ge 26 (348)
T 4ay7_A 12 EFTLKTRLLAALKGE 26 (348)
T ss_dssp CCCHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 478899999999764
No 19
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.90 E-value=30 Score=19.88 Aligned_cols=36 Identities=36% Similarity=0.487 Sum_probs=19.2
Q ss_pred CCC-CcCHHHHHhhhchHHHHHHHhcC---------chHHHHHHHH
Q 048261 15 PGS-HADEESVNKQLNDKERIAAALEN---------PNLRQLVDEC 50 (56)
Q Consensus 15 ~Gs-H~~e~~vNKQLnDKERVaAAlEN---------~~L~~~vn~c 50 (56)
||| -.+++.+.++|+.|+=...+||. ..|...++++
T Consensus 6 ~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 6 PGSTSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 34588999999999988888853 4555556555
No 20
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=28.56 E-value=79 Score=17.40 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=23.3
Q ss_pred CHHHHHhhhchH------HHHHHH---hcCchHHHHHHHHhc
Q 048261 20 DEESVNKQLNDK------ERIAAA---LENPNLRQLVDECLY 52 (56)
Q Consensus 20 ~e~~vNKQLnDK------ERVaAA---lEN~~L~~~vn~cl~ 52 (56)
+.++++++|.+- -|+..| ++||.-+..|.+-|+
T Consensus 10 s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IA 51 (66)
T 1r73_A 10 TDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIA 51 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCccCcHHHHHHHHHHH
Confidence 456777777763 366666 789998888877653
No 21
>4b0m_A F1 capsule-anchoring protein; protein transport, chaperone-usher pathway, PILI assembly; 1.80A {Yersinia pestis} PDB: 4b0e_A
Probab=27.87 E-value=30 Score=21.13 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=9.8
Q ss_pred cccceeEEEEec
Q 048261 3 TDILLQLDIKVA 14 (56)
Q Consensus 3 ~~~~fKvdV~I~ 14 (56)
.|+.|.|||+|-
T Consensus 28 ~PG~Y~vdI~vN 39 (136)
T 4b0m_A 28 LPGNYFVNVFVN 39 (136)
T ss_dssp CCEEEEEEEEET
T ss_pred CCcEEEEEEEEC
Confidence 488999999875
No 22
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.86 E-value=69 Score=17.55 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=21.5
Q ss_pred chHHHHHHHhc--CchHHHHHHHHhcc
Q 048261 29 NDKERIAAALE--NPNLRQLVDECLYS 53 (56)
Q Consensus 29 nDKERVaAAlE--N~~L~~~vn~cl~~ 53 (56)
.|.+|-..||. |-++-.+|+.++..
T Consensus 22 ~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 22 CDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 48999999997 88999999999853
No 23
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=27.08 E-value=28 Score=19.26 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=19.8
Q ss_pred hhchHHHHHHHhcCchHHHHHHHHhc
Q 048261 27 QLNDKERIAAALENPNLRQLVDECLY 52 (56)
Q Consensus 27 QLnDKERVaAAlEN~~L~~~vn~cl~ 52 (56)
.|.+--|++++|.+|.++.++.++.+
T Consensus 18 kl~~dP~t~~~~~DP~~~~~lq~i~~ 43 (71)
T 2llv_A 18 NLKKNPKTSEMMKDPQLVAKLIGYKQ 43 (71)
T ss_dssp HHHHSSTTHHHHHSCTHHHHHHHHHH
T ss_pred HHHcChHHHHHhcCHHHHHHHHHHHH
Confidence 35555678889999999998887654
No 24
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=26.78 E-value=90 Score=17.52 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=24.1
Q ss_pred CHHHHHhhhchH------HHHHHH---hcCchHHHHHHHHhc
Q 048261 20 DEESVNKQLNDK------ERIAAA---LENPNLRQLVDECLY 52 (56)
Q Consensus 20 ~e~~vNKQLnDK------ERVaAA---lEN~~L~~~vn~cl~ 52 (56)
+.+++++||.+- -|+..| +|||.-+..|.+-|+
T Consensus 17 s~eEL~~~L~elk~ELf~LR~q~atgql~n~~~ir~vRr~IA 58 (72)
T 3v2d_2 17 SPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIA 58 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 456778887774 367776 789998888877664
No 25
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=26.28 E-value=8.3 Score=22.76 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=18.1
Q ss_pred EEEecCCCCcCHHH---HHhhhchHHHHHHHhc
Q 048261 10 DIKVAPGSHADEES---VNKQLNDKERIAAALE 39 (56)
Q Consensus 10 dV~I~~GsH~~e~~---vNKQLnDKERVaAAlE 39 (56)
.|+|++||.+ .-+ ..| +|||||..-||
T Consensus 39 ~V~Vr~~s~n-~lsV~g~~k--~dKe~i~eiLq 68 (81)
T 1ghh_A 39 HVSVRYAAAN-NLSVIGATK--EDKQRISEILQ 68 (81)
T ss_dssp EEEEEEESSC-EEEEESCCH--HHHHHHHHHHH
T ss_pred eEEEeecCCC-ceeecCCCh--hHHHHHHHHHH
Confidence 6888888843 322 225 49999987765
No 26
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.91 E-value=14 Score=22.97 Aligned_cols=10 Identities=50% Similarity=0.664 Sum_probs=0.0
Q ss_pred HHHHHHhcCc
Q 048261 32 ERIAAALENP 41 (56)
Q Consensus 32 ERVaAAlEN~ 41 (56)
||||||||.-
T Consensus 90 E~~~~~~~~~ 99 (103)
T 4h22_A 90 PKLAAALEHH 99 (103)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 7899998853
No 27
>1or7_C Sigma-E factor negative regulatory protein, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.180.1.1
Probab=25.70 E-value=26 Score=20.57 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=9.5
Q ss_pred HHHHHHHhcCchHH
Q 048261 31 KERIAAALENPNLR 44 (56)
Q Consensus 31 KERVaAAlEN~~L~ 44 (56)
-.||+|||+++...
T Consensus 56 ~~rv~aaL~~Ep~~ 69 (90)
T 1or7_C 56 SSRVMAAIEEEPVR 69 (90)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHcCCcc
Confidence 47999999987644
No 28
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=25.01 E-value=28 Score=22.32 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=14.1
Q ss_pred cceeEEEEecCCCCcCH
Q 048261 5 ILLQLDIKVAPGSHADE 21 (56)
Q Consensus 5 ~~fKvdV~I~~GsH~~e 21 (56)
+-|+|.|++++|++.+-
T Consensus 11 lGy~V~v~LkDgs~~qG 27 (125)
T 4a53_A 11 YGSNVEVLLNNDSKARG 27 (125)
T ss_dssp TTCEEEEEETTSCEEEE
T ss_pred cCceEEEEECCCCEeeE
Confidence 46899999999997653
No 29
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=24.76 E-value=95 Score=17.09 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=23.8
Q ss_pred CHHHHHhhhchH------HHHHHH---hcCchHHHHHHHHhc
Q 048261 20 DEESVNKQLNDK------ERIAAA---LENPNLRQLVDECLY 52 (56)
Q Consensus 20 ~e~~vNKQLnDK------ERVaAA---lEN~~L~~~vn~cl~ 52 (56)
+.++++++|.+- -|+..| ++||+-+..|.+-|+
T Consensus 10 s~~EL~~~l~elk~ELf~LR~q~atgql~n~~~ir~vRr~IA 51 (67)
T 2zjr_V 10 QATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVA 51 (67)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 456777777763 366666 789998888877653
No 30
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=23.46 E-value=1.2e+02 Score=18.57 Aligned_cols=28 Identities=14% Similarity=0.308 Sum_probs=22.0
Q ss_pred EEEEecCCCCcCHHHHHhhhchHHHHHH
Q 048261 9 LDIKVAPGSHADEESVNKQLNDKERIAA 36 (56)
Q Consensus 9 vdV~I~~GsH~~e~~vNKQLnDKERVaA 36 (56)
..+.|+..+..+++++.+-+.+-|+.++
T Consensus 108 ~~i~I~~~~~Ls~~ei~~~~~~a~~~~~ 135 (151)
T 3dqg_A 108 QQIVIQSSGGLSKDQIENMIKEAEKNAA 135 (151)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 3566666678899999999988887765
No 31
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=21.14 E-value=30 Score=18.59 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=16.9
Q ss_pred CCCcCHHHHHhhhchHHHHHHHhcC
Q 048261 16 GSHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 16 GsH~~e~~vNKQLnDKERVaAAlEN 40 (56)
|+-..+..+.++|.+.||..+.+++
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~~~ 25 (158)
T 3k3c_A 1 GAMAAEMDWDKTVGAAEDVRRIFEH 25 (158)
T ss_dssp CCCCCSCCHHHHTCCHHHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhc
Confidence 3344455566778899988877764
Done!