Query 048261
Match_columns 56
No_of_seqs 104 out of 186
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 13:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048261.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048261hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sjpa3 d.56.1.1 (A:135-188,A: 79.4 0.27 1.9E-05 28.2 0.8 35 7-44 46-85 (89)
2 d2ogka1 d.77.1.2 (A:4-144) Hyp 43.7 5.1 0.00037 23.7 1.6 16 17-40 12-27 (141)
3 d3bwud1 b.167.1.1 (D:2-122) Ou 38.7 7.9 0.00058 21.6 1.9 15 2-16 27-41 (121)
4 d1giqa1 d.166.1.1 (A:3-209) En 36.8 11 0.00081 23.3 2.5 19 2-20 147-165 (207)
5 d2iida2 d.16.1.5 (A:320-432) L 32.0 8.8 0.00064 19.8 1.2 14 27-40 64-77 (113)
6 d1svva_ c.67.1.1 (A:) Low-spec 31.3 21 0.0015 19.5 2.9 23 10-39 316-338 (340)
7 d2nwua1 d.77.1.2 (A:3-144) Hyp 29.7 9.3 0.00068 22.4 1.2 11 30-40 13-23 (142)
8 d1or7c_ a.180.1.1 (C:) N-termi 27.9 11 0.00078 19.6 1.1 10 32-41 57-66 (66)
9 d1u5ka2 g.45.1.2 (A:81-237) Re 26.8 29 0.0021 19.4 3.0 21 28-51 3-23 (157)
10 d2pzza1 d.77.1.2 (A:2-134) Hyp 26.5 5.9 0.00043 23.0 -0.2 16 17-40 9-24 (133)
11 d2diia1 a.240.1.1 (A:8-55) TFI 26.3 25 0.0018 18.0 2.4 26 23-50 4-29 (48)
12 d2dw4a3 d.16.1.5 (A:655-763) L 25.8 13 0.00097 18.6 1.2 13 27-39 63-75 (109)
13 d1u94a2 d.48.1.1 (A:269-328) R 25.4 30 0.0022 17.8 2.7 36 14-51 18-55 (60)
14 d1b5qa2 d.16.1.5 (A:294-405) P 23.9 15 0.0011 18.6 1.3 14 26-39 65-78 (112)
15 d2v5za2 d.16.1.5 (A:290-401) M 22.2 17 0.0012 18.5 1.2 13 27-39 65-77 (112)
16 d1rw1a_ c.47.1.12 (A:) Hypothe 21.9 9.4 0.00069 20.8 0.1 20 26-45 71-90 (114)
17 d1z3ea1 c.47.1.12 (A:1-114) Re 20.4 13 0.00093 20.3 0.5 20 26-45 72-91 (114)
No 1
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Probab=79.42 E-value=0.27 Score=28.17 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=22.6
Q ss_pred eeEEEEecCCCC-----cCHHHHHhhhchHHHHHHHhcCchHH
Q 048261 7 LQLDIKVAPGSH-----ADEESVNKQLNDKERIAAALENPNLR 44 (56)
Q Consensus 7 fKvdV~I~~GsH-----~~e~~vNKQLnDKERVaAAlEN~~L~ 44 (56)
++..+.+.+|.. .|...++. .|+|+.++|+||.++
T Consensus 46 ~~t~le~veG~~~d~Gy~Sp~fvtd---~k~r~e~~l~~p~il 85 (89)
T d1sjpa3 46 FGLQLELTEVAVIKAGAATEVELKE---RKHRIEDAVRNAKAA 85 (89)
T ss_dssp SSEEEEEESEEEEEEECSSHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cceEEEEEEEEEecCCccCceEEcc---cHHhhHHHHhCceEe
Confidence 344555555543 34555543 278999999999886
No 2
>d2ogka1 d.77.1.2 (A:4-144) Hypothetical protein AF2318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=43.71 E-value=5.1 Score=23.66 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.7
Q ss_pred CCcCHHHHHhhhchHHHHHHHhcC
Q 048261 17 SHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 17 sH~~e~~vNKQLnDKERVaAAlEN 40 (56)
.|.+|+. |||..||++
T Consensus 12 ~haTED~--------~kV~~Al~~ 27 (141)
T d2ogka1 12 VHSTEDR--------EKVGEAIST 27 (141)
T ss_dssp ECTTSCH--------HHHHHHHGG
T ss_pred EEeccCH--------HHHHHHHHH
Confidence 7888866 999999986
No 3
>d3bwud1 b.167.1.1 (D:2-122) Outer membrane usher protein FimD {Escherichia coli [TaxId: 562]}
Probab=38.67 E-value=7.9 Score=21.60 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=11.6
Q ss_pred CcccceeEEEEecCC
Q 048261 2 FTDILLQLDIKVAPG 16 (56)
Q Consensus 2 ~~~~~fKvdV~I~~G 16 (56)
+.|++|.|||+|-..
T Consensus 27 ~~pG~Y~vdI~vN~~ 41 (121)
T d3bwud1 27 LPPGTYRVDIYLNNG 41 (121)
T ss_dssp SCSEEEEEEEEETTE
T ss_pred CCCeEEEEEEEECCe
Confidence 468999999987543
No 4
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin {Clostridium perfringens [TaxId: 1502]}
Probab=36.80 E-value=11 Score=23.25 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=15.3
Q ss_pred CcccceeEEEEecCCCCcC
Q 048261 2 FTDILLQLDIKVAPGSHAD 20 (56)
Q Consensus 2 ~~~~~fKvdV~I~~GsH~~ 20 (56)
|...+..+++.|+.|||.-
T Consensus 147 ~~~~pill~i~vPkGt~~~ 165 (207)
T d1giqa1 147 EKPTPLLIHLKLPKNTGML 165 (207)
T ss_dssp CCCSSEEEEEEECTTCBCE
T ss_pred ccCCceEEEEEcCCCCcee
Confidence 4556678999999999974
No 5
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=32.04 E-value=8.8 Score=19.78 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=11.7
Q ss_pred hhchHHHHHHHhcC
Q 048261 27 QLNDKERIAAALEN 40 (56)
Q Consensus 27 QLnDKERVaAAlEN 40 (56)
.|+|+||+.++|+.
T Consensus 64 ~l~~e~~~~~~l~~ 77 (113)
T d2iida2 64 ALDFKDCADIVFND 77 (113)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 47899999999874
No 6
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}
Probab=31.29 E-value=21 Score=19.47 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=16.4
Q ss_pred EEEecCCCCcCHHHHHhhhchHHHHHHHhc
Q 048261 10 DIKVAPGSHADEESVNKQLNDKERIAAALE 39 (56)
Q Consensus 10 dV~I~~GsH~~e~~vNKQLnDKERVaAAlE 39 (56)
.|++.+|-+.++++| ||.++||.
T Consensus 316 ~vR~s~~~~~t~edi-------d~~l~~l~ 338 (340)
T d1svva_ 316 IMRLCTSWATEEKEC-------HRFVEVLK 338 (340)
T ss_dssp EEEEECCTTCCHHHH-------HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-------HHHHHHHh
Confidence 367777878888877 66666653
No 7
>d2nwua1 d.77.1.2 (A:3-144) Hypothetical protein SSo1042 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=29.71 E-value=9.3 Score=22.36 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.1
Q ss_pred hHHHHHHHhcC
Q 048261 30 DKERIAAALEN 40 (56)
Q Consensus 30 DKERVaAAlEN 40 (56)
|.|||..|+.|
T Consensus 13 D~eKV~~Ai~n 23 (142)
T d2nwua1 13 DVNKVLSAISN 23 (142)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 44999999986
No 8
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=27.87 E-value=11 Score=19.59 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=8.0
Q ss_pred HHHHHHhcCc
Q 048261 32 ERIAAALENP 41 (56)
Q Consensus 32 ERVaAAlEN~ 41 (56)
.||+|||+++
T Consensus 57 ~rv~aaL~~E 66 (66)
T d1or7c_ 57 SRVMAAIEEE 66 (66)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 7899998864
No 9
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=26.79 E-value=29 Score=19.39 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=14.1
Q ss_pred hchHHHHHHHhcCchHHHHHHHHh
Q 048261 28 LNDKERIAAALENPNLRQLVDECL 51 (56)
Q Consensus 28 LnDKERVaAAlEN~~L~~~vn~cl 51 (56)
++|=||.++|. -+.+++++++
T Consensus 3 ~~D~~r~~~A~---~l~El~~~~~ 23 (157)
T d1u5ka2 3 LAEPERYAFAH---LMAEFADALF 23 (157)
T ss_dssp GGSHHHHHHHH---HHHHHHHHHS
T ss_pred hhhHHHHHHHH---HHHHHHHHHh
Confidence 67999999986 3444445444
No 10
>d2pzza1 d.77.1.2 (A:2-134) Hypotheical protein MJ1564 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=26.48 E-value=5.9 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=11.2
Q ss_pred CCcCHHHHHhhhchHHHHHHHhcC
Q 048261 17 SHADEESVNKQLNDKERIAAALEN 40 (56)
Q Consensus 17 sH~~e~~vNKQLnDKERVaAAlEN 40 (56)
-|.+|+. |||..|+.|
T Consensus 9 v~pTED~--------ekV~~Ai~n 24 (133)
T d2pzza1 9 VKPTEDK--------YKVKKAILN 24 (133)
T ss_dssp ECTTBCH--------HHHHHHHHH
T ss_pred EcCcCCH--------HHHHHHHHH
Confidence 4566654 888888765
No 11
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.31 E-value=25 Score=18.02 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=21.1
Q ss_pred HHHhhhchHHHHHHHhcCchHHHHHHHH
Q 048261 23 SVNKQLNDKERIAAALENPNLRQLVDEC 50 (56)
Q Consensus 23 ~vNKQLnDKERVaAAlEN~~L~~~vn~c 50 (56)
.+||.|-.|-|+.. |||.|+++-...
T Consensus 4 k~~keLeEKnr~L~--enp~L~qLYkdL 29 (48)
T d2diia1 4 KANKELEEKNRMLQ--EDPVLFQLYKDL 29 (48)
T ss_dssp CSCHHHHHHHHHHH--HCHHHHHHHHHH
T ss_pred hHHHHHHHHhhccc--cCHHHHHHHHHH
Confidence 47899999999874 899999875544
No 12
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.83 E-value=13 Score=18.61 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=11.2
Q ss_pred hhchHHHHHHHhc
Q 048261 27 QLNDKERIAAALE 39 (56)
Q Consensus 27 QLnDKERVaAAlE 39 (56)
.|.|.||+.++|+
T Consensus 63 ~l~~~~~~~~~l~ 75 (109)
T d2dw4a3 63 NISDDVIVGRCLA 75 (109)
T ss_dssp TSCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHH
Confidence 4689999999986
No 13
>d1u94a2 d.48.1.1 (A:269-328) RecA protein, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.37 E-value=30 Score=17.79 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=23.8
Q ss_pred cCCCCcCHHHHHhhh-chHHHHHHHh-cCchHHHHHHHHh
Q 048261 14 APGSHADEESVNKQL-NDKERIAAAL-ENPNLRQLVDECL 51 (56)
Q Consensus 14 ~~GsH~~e~~vNKQL-nDKERVaAAl-EN~~L~~~vn~cl 51 (56)
+.|+..+-. ..+| .=||.+...| |||.|.+-|.+-+
T Consensus 18 KsGsWysy~--~eklGQGre~~~~~L~enpel~~eie~~i 55 (60)
T d1u94a2 18 KAGAWYSYK--GEKIGQGKANATAWLKDNPETAKEIEKKV 55 (60)
T ss_dssp CCTTCEEET--TEEEESSHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccceEEeC--CccccchHHHHHHHHHHCHHHHHHHHHHH
Confidence 455555432 1233 5678887777 6999999887765
No 14
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=23.92 E-value=15 Score=18.59 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.8
Q ss_pred hhhchHHHHHHHhc
Q 048261 26 KQLNDKERIAAALE 39 (56)
Q Consensus 26 KQLnDKERVaAAlE 39 (56)
-.+.|+||+.++|+
T Consensus 65 ~~l~~~~~~~~~l~ 78 (112)
T d1b5qa2 65 EQQSDEQTKAEIMQ 78 (112)
T ss_dssp HTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 35789999988774
No 15
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.19 E-value=17 Score=18.45 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=10.8
Q ss_pred hhchHHHHHHHhc
Q 048261 27 QLNDKERIAAALE 39 (56)
Q Consensus 27 QLnDKERVaAAlE 39 (56)
.|+|+||+.++|+
T Consensus 65 ~ls~~e~~~~~l~ 77 (112)
T d2v5za2 65 RLTKEERLKKLCE 77 (112)
T ss_dssp TSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 3789999999875
No 16
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.92 E-value=9.4 Score=20.80 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=16.5
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
+.++|.|-+.+-++||.|++
T Consensus 71 ~~ls~~e~i~~i~~~P~Lik 90 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIK 90 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBC
T ss_pred ccccHHHHHHHHHhCcceEe
Confidence 35889999999999998864
No 17
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=20.39 E-value=13 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.0
Q ss_pred hhhchHHHHHHHhcCchHHH
Q 048261 26 KQLNDKERIAAALENPNLRQ 45 (56)
Q Consensus 26 KQLnDKERVaAAlEN~~L~~ 45 (56)
+.++|.|-+.+-++||.|++
T Consensus 72 ~~ls~~~~i~ll~~~P~Lik 91 (114)
T d1z3ea1 72 ESMPLQDLYRLINEHPGLLR 91 (114)
T ss_dssp GGSBHHHHHHHHHHCGGGBC
T ss_pred hhhhhHHHHHHHHhChhhee
Confidence 56788888888888998763
Done!