BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048263
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 107 bits (266), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 86 TKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145
++ ERK+G PWTE EH++FL GLK GKGDW+ IS+NFV TRTPTQVASHAQKYF+RQ S
Sbjct: 124 SEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLS 183
Query: 146 SDKKNRRTSLFDM 158
K RR S+ D+
Sbjct: 184 GGKDKRRASIHDI 196
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 75/101 (74%), Gaps = 13/101 (12%)
Query: 75 DEGYLS--DGPIHTKH---ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTP 129
DEGY S D H + ERKRG PWTE EH++FL GL+ +GKGDW+GIS+NFV TRTP
Sbjct: 71 DEGYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTP 130
Query: 130 TQVASHAQKYFLRQASSDKKNRRTSLFD--------MPLKE 162
TQVASHAQKYFLR+++ +++ RR+SLFD MP++E
Sbjct: 131 TQVASHAQKYFLRRSNLNRRRRRSSLFDITTDSVSVMPIEE 171
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 70.9 bits (172), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 83 PIHTKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142
P K K+G WT+ EH FL G+++ GKG WK I++ FV TRTPTQ+ SHAQKY+LR
Sbjct: 368 PTGKKTSLKQG--WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLR 424
Query: 143 QASSDKKNRRTSLFDMPLKE 162
Q + KN+R S+ D+ L++
Sbjct: 425 Q-KQETKNKR-SIHDLSLQD 442
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 89 ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142
++K+ + WT EH F+E L G D K IS+ +V+TR PTQV +HAQKYFLR
Sbjct: 168 KKKQSRYWTPEEHSRFIEALSKYGHKDVKSISQ-YVSTRNPTQVRTHAQKYFLR 220
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142
WTE EH FLE L L + DWK I K FV ++T Q+ SHAQKYFL+
Sbjct: 64 WTEQEHDKFLEALHLFDR-DWKKI-KAFVGSKTVIQIRSHAQKYFLK 108
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142
K+ + WT+ EH+ FLE L L + DWK I ++FV ++T Q+ SHAQKYF++
Sbjct: 39 KQRENWTDEEHQKFLEALTLFDR-DWKKI-ESFVGSKTVIQIRSHAQKYFIK 88
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 83 PIHTKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140
P +R+R WTE EH F+E L+L G+ W+ I ++ V T+T Q+ SHAQK+F
Sbjct: 17 PYTITKQRER---WTEEEHNRFIEALRLYGRA-WQKIEEH-VATKTAVQIRSHAQKFF 69
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 83 PIHTKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142
P +R+R WTE EH FLE L+L G+ W+ I ++ + T+T Q+ SHAQK+F +
Sbjct: 17 PYTITKQRER---WTEDEHERFLEALRLYGRA-WQRIEEH-IGTKTAVQIRSHAQKFFTK 71
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 95 PWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140
PW+ EH +FL+ ++ G+G+WK IS + +R Q+ +HA+ YF
Sbjct: 231 PWSNEEHELFLKAIEKYGRGNWKLIS-TLIKSRNTLQIKNHARIYF 275
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142
WT+ E R+F+E KL K D K I ++ V T+T QV SHAQK+ L+
Sbjct: 153 WTKEEERLFVEAYKLYDK-DNKKIQEH-VKTKTILQVRSHAQKFALK 197
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRRTSL 155
WT EH FLE ++ G D+ I+K FV TR QV +H Y Q ++ T +
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAK-FVQTRNHHQVRTHVNTYLKNQKKAEAATSSTQV 715
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 37.7 bits (86), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRR 152
WT E +F +GL G+ W I+K + +RT QV S+A++YF +A +D R
Sbjct: 122 WTSEEKELFEQGLVKYGRR-WTKIAK-LIGSRTVLQVKSYARQYFKNKAKNDGSERE 176
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASH 135
WT E ++ L+ ++ G G+W+ ++ + +RTPT+V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEH 109
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRRTS 154
W E E +F +GL G+ W I+K + TRT QV S+A++YF + ++ TS
Sbjct: 102 WAEEEKELFEKGLAQFGRR-WTKIAK-LIGTRTVLQVKSYAKQYFKNKPKAEPAAEVTS 158
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASH 135
WT E ++ L+ ++ G G+W+ ++ + +RTP +V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEH 109
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASH 135
WT E ++ L+ ++ G G+W+ ++ + +RTP +V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEH 109
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140
WT E +F +GL G+ W ISK + +RT QV S+A++YF
Sbjct: 121 WTIEEKELFEQGLAKFGRR-WTKISK-LIGSRTVLQVKSYARQYF 163
>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1
Length = 431
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 8 GHNGHNSRTCHAKGCFKLFGVNILDQIQDLPSMKKSVKKSYSVGNLQSLGGEFNGHVDEG 67
+ GH + CH + FKL +L+Q Q S + GN+ L F +V
Sbjct: 304 SYPGHETLWCHRRQIFKLIHQLLLEQSQSATPQSTSASITDGSGNISHLSSTFQSYVTNP 363
Query: 68 REFDGDVD---EGY 78
+ DG D +GY
Sbjct: 364 MDVDGMSDPNKQGY 377
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 1 MRKCSHCGHNGHNSRTCHA---KGCFK 24
M KC +CG GH +R C A KGC+K
Sbjct: 389 MVKCFNCGKEGHTARNCRAPRKKGCWK 415
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KCS+CG GH +R C A KGC+K
Sbjct: 394 KCSNCGKEGHIARNCRAPRKKGCWK 418
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 81 DGPIHTKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNF-----VTTRTPTQVASH 135
DG ++ +K+ WT++ H +FL+ ++ +G K + K V T VASH
Sbjct: 212 DGESMSQPAKKKKIQWTDSLHDLFLQAIRHIGLD--KAVPKKILAFMSVPYLTRENVASH 269
Query: 136 AQKY--FLRQAS 145
QKY FLR+ +
Sbjct: 270 LQKYRIFLRRVA 281
>sp|Q9Q721|GAG_HV1V9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag PE=3 SV=3
Length = 498
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KCS+CG GH +R C A KGC+K
Sbjct: 394 KCSNCGKEGHIARNCRAPRKKGCWK 418
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141
WT E + L+ ++ G G+W+ ++ + +RTP +V H ++
Sbjct: 70 WTSREEQSLLDAIEQYGFGNWEDMAAHVGASRTPQEVMDHYVSMYI 115
>sp|Q7KSD8|TAD2A_DROME Transcriptional adapter 2A OS=Drosophila melanogaster GN=Rpb4 PE=1
SV=1
Length = 562
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASH 135
WT + R+ L+ L+ G G+W+ +S+ P +V H
Sbjct: 154 WTARDERILLKTLRTHGYGNWEAVSQALDQRHEPAEVRRH 193
>sp|P03347|GAG_HV1B1 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag PE=1 SV=3
Length = 512
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 1 MRKCSHCGHNGHNSRTCHA---KGCFK 24
M KC +CG GH +R C A KGC+K
Sbjct: 389 MVKCFNCGKEGHTARNCRAPRKKGCWK 415
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 391 KCFNCGKEGHTARNCRAPRKKGCWK 415
>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1
PE=2 SV=1
Length = 553
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKN 122
K+G PWT AE + ++ +K G+G+W + KN
Sbjct: 41 KKG-PWTSAEDAILVDYVKKHGEGNWNAVQKN 71
>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1
PE=2 SV=1
Length = 553
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKN 122
K+G PWT AE + ++ +K G+G+W + KN
Sbjct: 41 KKG-PWTSAEDAILVDYVKKHGEGNWNAVQKN 71
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSD 147
WT E +F +GL G+ W I+ + +RT QV S+A++YF + D
Sbjct: 118 WTVEEKELFEQGLAKFGRR-WTKIA-TLLKSRTVLQVKSYARQYFKNKVKWD 167
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 103 VFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRRTSLFDMPLKE 162
+F G ++ G+ W IS+ FV TRTP QV ++A+ +F + + D+ +E
Sbjct: 39 MFDHGQEIYGRS-WTSISQ-FVQTRTPLQVKNYARHFFKTKVVQKVEEGEDEDVDIEGEE 96
Query: 163 SG 164
SG
Sbjct: 97 SG 98
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG +GH++R C A +GC+K
Sbjct: 390 KCWNCGKDGHSARQCRAPRRQGCWK 414
>sp|Q6L3L0|R1B23_SOLDE Putative late blight resistance protein homolog R1B-23 OS=Solanum
demissum GN=R1B-23 PE=3 SV=1
Length = 1262
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 13/65 (20%)
Query: 17 CHAKGCFKLFGVNILDQIQDLPSMKKSVKKSYSVGNLQSLGGEFNGHVDEGREFDGDVDE 76
CH K CF FG + D++ D+P + ++ S ++S EGR + D+ E
Sbjct: 724 CHLKSCFLYFGAFLEDRVIDIPRL---IRLWISESFIKSC---------EGRSLE-DIAE 770
Query: 77 GYLSD 81
GYL +
Sbjct: 771 GYLEN 775
>sp|Q7Z3K6|MIER3_HUMAN Mesoderm induction early response protein 3 OS=Homo sapiens
GN=MIER3 PE=1 SV=2
Length = 550
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145
WTE E R F L L GK D+ I KN V TRT VA Y++ + S
Sbjct: 282 WTEEECRSFEHALMLFGK-DFHLIQKNKVRTRT---VAECVAFYYMWKKS 327
>sp|P04591|GAG_HV1H2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag PE=1 SV=3
Length = 500
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 391 KCFNCGKEGHTARNCRAPRKKGCWK 415
>sp|Q4R3R9|MIER3_MACFA Mesoderm induction early response protein 3 OS=Macaca fascicularis
GN=MIER3 PE=2 SV=1
Length = 550
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145
WTE E R F L L GK D+ I KN V TRT VA Y++ + S
Sbjct: 282 WTEEECRSFEHALMLFGK-DFHLIQKNKVRTRT---VAECVAFYYMWKKS 327
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141
W+ + + LEGL++ G G+W ++++ V T++ Q H + +L
Sbjct: 105 WSADDEMLLLEGLEIYGLGNWAEVAEH-VGTKSKEQCLEHYRNIYL 149
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 386 KCFNCGKEGHIARNCRAPRKKGCWK 410
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 385 KCFNCGKEGHIARNCRAPRKKGCWK 409
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 391 KCFNCGKEGHIARNCRAPRKKGCWK 415
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 386 KCFNCGKEGHIARNCRAPRKKGCWK 410
>sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rca-1 PE=3 SV=2
Length = 324
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 89 ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQ 131
+++RG PW+ E + ++ +K LG G+W +++ + TRTP Q
Sbjct: 6 DQRRG-PWSAGEDQRLIKLVKDLGPGNWVNVAR-ILGTRTPKQ 46
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 391 KCFNCGKEGHIARNCRAPRKKGCWK 415
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 391 KCFNCGKEGHIARNCRAPRKKGCWK 415
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH++R C A +GC+K
Sbjct: 389 KCWNCGKEGHSARQCRAPRRQGCWK 413
>sp|Q5ZKT9|MIER1_CHICK Mesoderm induction early response protein 1 OS=Gallus gallus
GN=MIER1 PE=2 SV=1
Length = 513
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 84 IHTKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRT 128
+ K R+ WTE E R F +GLK+ GK D+ I N V TR+
Sbjct: 278 FNVKAAREELSVWTEEECRNFEQGLKVYGK-DFHVIQANKVRTRS 321
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 397 KCFNCGKEGHLARNCRAPRKKGCWK 421
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 388 KCFNCGKEGHLARNCRAPRKKGCWK 412
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 386 KCFNCGKEGHLARNCRAPRKKGCWK 410
>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ST) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH++R C A +GC+K
Sbjct: 390 KCWNCGKEGHSARQCRAPRRQGCWK 414
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 388 KCFNCGKEGHLARNCRAPRKKGCWK 412
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 3 KCSHCGHNGHNSRTCHA---KGCFK 24
KC +CG GH +R C A KGC+K
Sbjct: 395 KCFNCGKEGHIARNCRAPRKKGCWK 419
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,399,694
Number of Sequences: 539616
Number of extensions: 3525339
Number of successful extensions: 8545
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 8409
Number of HSP's gapped (non-prelim): 163
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)