Query 048263
Match_columns 207
No_of_seqs 217 out of 655
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 8.5E-18 2.9E-22 120.4 9.0 66 90-157 6-71 (72)
2 2elk_A SPCC24B10.08C protein; 99.7 1.2E-16 4.1E-21 110.7 6.0 49 92-141 8-57 (58)
3 2yum_A ZZZ3 protein, zinc fing 99.6 1.5E-16 5.2E-21 114.2 6.1 55 90-145 5-64 (75)
4 1x41_A Transcriptional adaptor 99.6 2.8E-16 9.6E-21 109.1 6.4 51 91-142 6-56 (60)
5 1guu_A C-MYB, MYB proto-oncoge 99.6 1.2E-15 4.2E-20 102.4 7.1 49 92-141 2-50 (52)
6 2yus_A SWI/SNF-related matrix- 99.6 3.5E-16 1.2E-20 115.2 3.9 50 89-140 14-63 (79)
7 1gvd_A MYB proto-oncogene prot 99.6 1.9E-15 6.4E-20 101.6 6.0 48 92-140 2-49 (52)
8 2d9a_A B-MYB, MYB-related prot 99.5 6.7E-15 2.3E-19 101.5 6.3 51 90-141 5-55 (60)
9 1w0t_A Telomeric repeat bindin 99.5 1.7E-14 6E-19 97.5 7.2 49 92-141 1-51 (53)
10 1ity_A TRF1; helix-turn-helix, 99.5 1.8E-14 6.2E-19 102.2 7.6 55 88-143 5-61 (69)
11 2eqr_A N-COR1, N-COR, nuclear 99.5 3.7E-14 1.3E-18 99.1 8.0 54 87-145 6-59 (61)
12 3sjm_A Telomeric repeat-bindin 99.5 3E-14 1E-18 101.0 7.4 52 89-141 7-60 (64)
13 2dim_A Cell division cycle 5-l 99.5 1.1E-13 3.9E-18 98.1 8.6 52 89-141 5-56 (70)
14 2din_A Cell division cycle 5-l 99.4 3.2E-13 1.1E-17 94.8 7.6 52 91-145 7-58 (66)
15 2ltp_A Nuclear receptor corepr 99.1 4.6E-14 1.6E-18 105.3 0.0 53 91-145 14-66 (89)
16 2cqr_A RSGI RUH-043, DNAJ homo 99.4 9.8E-13 3.4E-17 95.9 6.7 51 89-140 14-67 (73)
17 1gv2_A C-MYB, MYB proto-oncoge 99.4 8.7E-13 3E-17 99.1 6.0 48 92-140 3-50 (105)
18 2iw5_B Protein corest, REST co 99.3 5.6E-13 1.9E-17 115.9 5.3 57 87-145 127-183 (235)
19 2yqk_A Arginine-glutamic acid 99.3 2.9E-12 9.9E-17 90.3 7.8 55 88-146 4-58 (63)
20 3osg_A MYB21; transcription-DN 99.3 2.2E-12 7.7E-17 100.5 7.1 54 86-141 4-57 (126)
21 2ckx_A NGTRF1, telomere bindin 99.3 4.4E-12 1.5E-16 94.4 8.2 51 94-144 1-54 (83)
22 2k9n_A MYB24; R2R3 domain, DNA 99.3 1.8E-12 6.2E-17 98.3 6.2 48 93-141 1-48 (107)
23 2k9n_A MYB24; R2R3 domain, DNA 99.3 4.7E-12 1.6E-16 96.0 7.3 52 92-145 52-103 (107)
24 2aje_A Telomere repeat-binding 99.3 7.6E-12 2.6E-16 97.0 8.1 57 88-144 8-67 (105)
25 3zqc_A MYB3; transcription-DNA 99.3 3.1E-12 1.1E-16 100.1 5.6 48 93-141 2-49 (131)
26 1h8a_C AMV V-MYB, MYB transfor 99.3 4.7E-12 1.6E-16 98.4 6.1 50 91-141 25-74 (128)
27 2roh_A RTBP1, telomere binding 99.3 1.5E-11 5.2E-16 97.7 8.4 57 88-144 26-85 (122)
28 1gv2_A C-MYB, MYB proto-oncoge 99.2 7.8E-12 2.7E-16 93.8 5.8 48 91-140 54-101 (105)
29 2llk_A Cyclin-D-binding MYB-li 99.2 1.1E-11 3.6E-16 90.5 6.2 45 90-137 20-64 (73)
30 3osg_A MYB21; transcription-DN 99.2 1.6E-11 5.6E-16 95.6 7.5 54 91-146 60-113 (126)
31 2juh_A Telomere binding protei 99.2 1.6E-11 5.6E-16 97.4 7.5 57 88-144 12-71 (121)
32 2xag_B REST corepressor 1; ami 99.2 6.9E-12 2.3E-16 118.3 5.6 54 90-145 377-430 (482)
33 2cjj_A Radialis; plant develop 99.2 1.7E-11 6E-16 93.0 6.7 51 93-144 8-61 (93)
34 2crg_A Metastasis associated p 99.2 3.3E-11 1.1E-15 86.7 7.6 54 89-146 4-57 (70)
35 1irz_A ARR10-B; helix-turn-hel 99.2 5.2E-11 1.8E-15 85.4 7.6 55 89-145 3-62 (64)
36 3zqc_A MYB3; transcription-DNA 99.2 4.9E-11 1.7E-15 93.3 7.0 53 91-145 52-104 (131)
37 1h8a_C AMV V-MYB, MYB transfor 99.1 2.7E-11 9.1E-16 94.1 4.9 48 91-140 77-124 (128)
38 1h89_C C-MYB, MYB proto-oncoge 99.1 6.1E-11 2.1E-15 95.0 6.1 49 91-140 56-104 (159)
39 1wgx_A KIAA1903 protein; MYB D 99.1 9.5E-11 3.2E-15 85.9 5.0 46 93-139 8-56 (73)
40 2cqq_A RSGI RUH-037, DNAJ homo 99.0 3.9E-10 1.3E-14 81.8 6.7 46 92-139 7-55 (72)
41 1h89_C C-MYB, MYB proto-oncoge 99.0 2.1E-10 7.2E-15 91.8 4.8 47 91-139 108-154 (159)
42 1x58_A Hypothetical protein 49 99.0 8.2E-10 2.8E-14 78.9 5.9 47 92-139 7-55 (62)
43 4a69_C Nuclear receptor corepr 99.0 6.1E-10 2.1E-14 84.2 5.4 63 76-144 27-89 (94)
44 4eef_G F-HB80.4, designed hema 98.8 4.5E-10 1.5E-14 82.8 0.3 47 90-137 17-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.8 3.2E-09 1.1E-13 93.0 4.3 51 92-143 7-62 (246)
46 1fex_A TRF2-interacting telome 98.1 2.7E-06 9.3E-11 59.3 4.5 48 93-140 2-57 (59)
47 1ofc_X ISWI protein; nuclear p 97.6 4.5E-05 1.5E-09 68.4 5.0 50 92-141 211-274 (304)
48 1ug2_A 2610100B20RIK gene prod 97.6 0.0007 2.4E-08 51.8 10.7 51 89-140 29-81 (95)
49 3hm5_A DNA methyltransferase 1 97.6 0.00014 5E-09 55.2 6.6 49 94-144 31-84 (93)
50 2xag_B REST corepressor 1; ami 97.6 9.8E-06 3.3E-10 76.7 0.0 41 93-135 189-229 (482)
51 1ofc_X ISWI protein; nuclear p 97.5 0.00019 6.5E-09 64.4 7.2 50 94-144 111-160 (304)
52 2ebi_A DNA binding protein GT- 97.0 0.00081 2.8E-08 48.7 4.9 56 90-146 1-69 (86)
53 4b4c_A Chromodomain-helicase-D 96.9 0.0012 4E-08 54.2 5.7 55 89-143 3-60 (211)
54 2lr8_A CAsp8-associated protei 95.9 0.00015 5.2E-09 52.8 0.0 46 92-139 13-60 (70)
55 4b4c_A Chromodomain-helicase-D 96.8 0.00082 2.8E-08 55.2 3.8 50 93-143 134-196 (211)
56 2xb0_X Chromo domain-containin 96.4 0.0023 7.9E-08 56.4 3.8 28 94-121 169-196 (270)
57 4iej_A DNA methyltransferase 1 96.3 0.0097 3.3E-07 45.3 6.5 51 94-145 31-85 (93)
58 2y9y_A Imitation switch protei 95.6 0.021 7.1E-07 52.6 6.6 51 94-145 124-175 (374)
59 2y9y_A Imitation switch protei 94.9 0.038 1.3E-06 50.9 6.1 52 92-143 227-292 (374)
60 1dsq_A Nucleic acid binding pr 94.5 0.019 6.3E-07 33.6 2.1 19 2-20 3-21 (26)
61 1ign_A Protein (RAP1); RAP1,ye 94.0 0.093 3.2E-06 46.0 6.1 28 115-143 173-200 (246)
62 2hzd_A Transcriptional enhance 92.9 0.17 5.8E-06 37.6 5.2 49 90-139 3-71 (82)
63 1nc8_A Nucleocapsid protein; H 91.0 0.099 3.4E-06 31.0 1.7 19 2-20 7-25 (29)
64 1a6b_B Momulv, zinc finger pro 90.1 0.15 5.3E-06 32.9 2.1 19 2-20 11-29 (40)
65 2bl6_A Nucleocapsid protein P1 86.6 0.29 1E-05 30.1 1.6 17 3-19 2-18 (37)
66 2a51_A Nucleocapsid protein; s 85.9 0.43 1.5E-05 29.7 2.2 16 3-18 23-38 (39)
67 2xb0_X Chromo domain-containin 85.7 2.2 7.6E-05 37.4 7.4 45 93-137 3-50 (270)
68 1u6p_A GAG polyprotein; MLV, A 85.6 0.33 1.1E-05 33.4 1.6 18 3-20 25-42 (56)
69 2bl6_A Nucleocapsid protein P1 84.7 0.51 1.7E-05 29.0 2.1 17 3-19 21-37 (37)
70 2ec7_A GAG polyprotein (PR55GA 83.3 0.61 2.1E-05 30.4 2.1 19 2-20 7-25 (49)
71 1a1t_A Nucleocapsid protein; s 83.1 0.49 1.7E-05 31.3 1.6 17 3-19 14-30 (55)
72 2a51_A Nucleocapsid protein; s 82.7 0.59 2E-05 29.0 1.8 18 3-20 2-19 (39)
73 2ec7_A GAG polyprotein (PR55GA 82.1 0.64 2.2E-05 30.3 1.9 19 2-20 28-46 (49)
74 2ihx_A Nucleocapsid (NC) prote 80.9 0.75 2.6E-05 31.2 1.9 18 3-20 32-49 (61)
75 1a1t_A Nucleocapsid protein; s 79.1 0.89 3.1E-05 30.0 1.8 19 2-20 34-52 (55)
76 1cl4_A Protein (GAG polyprotei 77.9 1.4 4.7E-05 29.6 2.5 19 2-20 31-49 (60)
77 1cl4_A Protein (GAG polyprotei 73.3 0.7 2.4E-05 31.0 0.0 19 2-20 2-20 (60)
78 2ihx_A Nucleocapsid (NC) prote 73.2 1.5 5.2E-05 29.7 1.7 19 2-20 5-23 (61)
79 2cqf_A RNA-binding protein LIN 70.4 2.4 8.4E-05 28.9 2.3 19 2-20 8-26 (63)
80 2cqf_A RNA-binding protein LIN 69.7 2.1 7.2E-05 29.3 1.8 19 2-20 30-48 (63)
81 2li6_A SWI/SNF chromatin-remod 69.2 5.8 0.0002 30.0 4.4 29 114-143 71-99 (116)
82 2li8_A Protein LIN-28 homolog 68.5 2.1 7.2E-05 30.5 1.6 17 3-19 26-42 (74)
83 2li8_A Protein LIN-28 homolog 66.3 3.1 0.00011 29.6 2.2 19 2-20 47-65 (74)
84 3nyb_B Protein AIR2; polya RNA 66.2 2.6 8.9E-05 30.7 1.8 19 2-20 47-65 (83)
85 3ts2_A Protein LIN-28 homolog 64.7 2.6 8.8E-05 33.4 1.6 18 3-20 99-116 (148)
86 2eqy_A RBP2 like, jumonji, at 64.6 20 0.00068 27.3 6.6 32 114-146 64-99 (122)
87 2lm1_A Lysine-specific demethy 63.2 12 0.0004 27.6 4.9 31 114-145 66-100 (107)
88 2lli_A Protein AIR2; RNA surve 63.0 3.7 0.00013 30.9 2.1 19 2-20 65-83 (124)
89 2jrz_A Histone demethylase jar 62.2 10 0.00035 28.6 4.6 41 104-145 45-96 (117)
90 3nyb_B Protein AIR2; polya RNA 60.5 2.8 9.6E-05 30.5 1.0 19 2-20 6-24 (83)
91 2cxy_A BAF250B subunit, HBAF25 59.0 11 0.00039 28.7 4.3 32 114-146 73-108 (125)
92 1kkx_A Transcription regulator 55.6 9 0.00031 29.5 3.2 31 114-145 70-100 (123)
93 2ysa_A Retinoblastoma-binding 54.2 5.2 0.00018 27.2 1.5 19 2-20 8-26 (55)
94 2lli_A Protein AIR2; RNA surve 53.7 6.5 0.00022 29.5 2.1 19 2-20 5-23 (124)
95 1ig6_A MRF-2, modulator recogn 48.8 11 0.00036 27.9 2.6 30 114-144 55-89 (107)
96 2jxj_A Histone demethylase jar 48.2 8.3 0.00028 27.9 1.9 29 114-143 58-90 (96)
97 2rq5_A Protein jumonji; develo 44.3 25 0.00084 27.1 4.1 32 114-146 64-100 (121)
98 1c20_A DEAD ringer protein; DN 43.9 37 0.0013 25.8 5.1 32 114-146 74-110 (128)
99 2kk0_A AT-rich interactive dom 43.4 24 0.00084 27.6 4.0 32 114-146 86-122 (145)
100 2lc3_A E3 ubiquitin-protein li 41.8 76 0.0026 23.7 6.2 53 88-144 8-81 (88)
101 2juh_A Telomere binding protei 37.4 14 0.00049 28.7 1.8 26 92-118 78-103 (121)
102 3o2i_A Uncharacterized protein 31.2 33 0.0011 26.7 2.9 26 93-118 48-74 (125)
103 3e7l_A Transcriptional regulat 29.9 98 0.0033 20.1 4.8 27 98-126 18-44 (63)
104 2gu0_A Nonstructural protein 2 29.7 13 0.00043 33.3 0.3 57 93-157 191-256 (312)
105 4g0a_A Non-structural protein 28.3 13 0.00045 33.3 0.2 59 92-158 193-260 (317)
106 1je8_A Nitrate/nitrite respons 27.5 1.2E+02 0.0041 20.6 5.1 49 93-146 19-67 (82)
107 3ulq_B Transcriptional regulat 26.8 1.3E+02 0.0046 21.0 5.4 51 92-147 26-76 (90)
108 1x3u_A Transcriptional regulat 26.3 1.4E+02 0.0046 19.4 5.7 46 96-146 17-62 (79)
109 3c57_A Two component transcrip 24.5 1.8E+02 0.0062 20.2 5.9 49 93-146 25-73 (95)
110 4ae8_A Thioesterase superfamil 23.1 33 0.0011 28.3 1.7 36 92-128 20-55 (211)
111 1fse_A GERE; helix-turn-helix 22.4 1.5E+02 0.0053 18.7 5.8 50 92-146 8-57 (74)
112 2a1i_A DNA excision repair pro 20.5 55 0.0019 26.3 2.5 22 93-114 116-137 (146)
113 2e1c_A Putative HTH-type trans 20.5 2.4E+02 0.0082 21.8 6.2 39 98-138 26-64 (171)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.74 E-value=8.5e-18 Score=120.45 Aligned_cols=66 Identities=29% Similarity=0.476 Sum_probs=60.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccccccCCCccc
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRRTSLFD 157 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~~k~krrsSl~d 157 (207)
..++++||+|||++|++++++||. +|..||+ +|++||..||++||++||.+..+.+..+++++|++
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 345789999999999999999999 9999997 99999999999999999999988777778888765
No 2
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.65 E-value=1.2e-16 Score=110.67 Aligned_cols=49 Identities=24% Similarity=0.574 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVT-TRTPTQVASHAQKYFL 141 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~-TRT~~QVrsHaQKYf~ 141 (207)
...+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence 357899999999999999999889999996 999 9999999999999986
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=114.15 Aligned_cols=55 Identities=29% Similarity=0.451 Sum_probs=49.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGK-----GDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGk-----GdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
.....+||+|||++|+++|++||. ++|..||+ +|++||..||++||++||.++.+
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999996 69999996 99999999999999999987644
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.8e-16 Score=109.14 Aligned_cols=51 Identities=27% Similarity=0.529 Sum_probs=47.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLR 142 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~r 142 (207)
..+.+||+|||++|+++|++||.++|..||+ +|++||+.||+.||++||..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHccC
Confidence 4568999999999999999999889999996 99999999999999999764
No 5
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.61 E-value=1.2e-15 Score=102.39 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
++++||+|||++|++++++||.++|..||+ +|++||+.||+.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999999996 9999999999999998863
No 6
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=115.22 Aligned_cols=50 Identities=30% Similarity=0.551 Sum_probs=45.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
......+||+|||++||+||++|| ++|..||+ +|++||+.||+.||++|+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTSC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHhc
Confidence 344578999999999999999999 69999996 999999999999988763
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.9e-15 Score=101.63 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
++++||+|||++|++++++||.++|..||+ +|++||..||+.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 468999999999999999999989999996 999999999999998875
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=6.7e-15 Score=101.52 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=46.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
..++.+||+|||++|++++++||.++|..||+ +|++||+.||+.||++|+.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcC
Confidence 34578999999999999999999779999996 9999999999999988753
No 9
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=1.7e-14 Score=97.52 Aligned_cols=49 Identities=18% Similarity=0.383 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVT--TRTPTQVASHAQKYFL 141 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~--TRT~~QVrsHaQKYf~ 141 (207)
++++||+|||++|++++++||.++|..||+ +++ +||+.||+.+|.+|..
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence 368999999999999999999889999996 999 9999999999998753
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.53 E-value=1.8e-14 Score=102.15 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=49.9
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHHHh
Q 048263 88 HERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVT--TRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 88 ~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~--TRT~~QVrsHaQKYf~rl 143 (207)
..++++.+||+|||++|++++++||.++|..||+ +++ +||..||+.||.+|+...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCC
Confidence 3567789999999999999999999889999996 999 999999999999887654
No 11
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=99.12 Aligned_cols=54 Identities=17% Similarity=0.376 Sum_probs=48.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 87 KHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 87 ~~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
.++|+...+||+||+++|++||.+||+ +|..||+ +|++||..||..| ||...+.
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~-~l~~rt~~~~v~~---Yy~~Kk~ 59 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS-YLERKSVPDCVLY---YYLTKKN 59 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH-HCTTSCHHHHHHH---HHHHTCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHH---HHHhcCC
Confidence 477889999999999999999999998 9999995 9999999999987 6665543
No 12
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=3e-14 Score=100.95 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=44.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC--CCCHHHHHHHHHHHHH
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVT--TRTPTQVASHAQKYFL 141 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~--TRT~~QVrsHaQKYf~ 141 (207)
...++.+||+|||++|+++|++||.++|..||+ +++ +||+.||+.+|..+..
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHhc
Confidence 344668999999999999999999999999997 755 9999999999988753
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=98.09 Aligned_cols=52 Identities=15% Similarity=0.427 Sum_probs=46.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
...++++||+|||++|+++|++||.++|..||+ +|++||..||+.||++|+.
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHcC
Confidence 345678999999999999999999889999996 9999999999999887753
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=94.83 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=46.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
.+..+||+|||++|++++++||. +|..||+ ++ +||+.||+.||++|+....+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhc
Confidence 35689999999999999999999 9999996 55 59999999999999877644
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.07 E-value=4.6e-14 Score=105.33 Aligned_cols=53 Identities=28% Similarity=0.403 Sum_probs=48.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
...++||+|||++|++++++||. +|..||+ +|++||..||++||+.|+.++..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 34689999999999999999999 9999996 99999999999999999876543
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=9.8e-13 Score=95.86 Aligned_cols=51 Identities=16% Similarity=0.424 Sum_probs=45.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGK---GDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGk---GdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
.+....+||.||+.+|++||++||+ .+|..||+ +|++||..||+.||+.+.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999994 38999996 999999999999998764
No 17
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.35 E-value=8.7e-13 Score=99.06 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
++++||+|||++|++++++||.++|..||+ +|++||+.||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence 468999999999999999999989999996 999999999999988875
No 18
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.35 E-value=5.6e-13 Score=115.89 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=50.8
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 87 KHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 87 ~~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
....+...+||+||+++|++||.+||+ ||..||+ +|+|||..||++||++|..++..
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRlnL 183 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI 183 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhhH
Confidence 345567899999999999999999998 9999997 99999999999999988777543
No 19
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.9e-12 Score=90.33 Aligned_cols=55 Identities=25% Similarity=0.509 Sum_probs=46.8
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 88 HERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 88 ~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
..+.....||+||+++|++||.+||+ ||..|++++|++||..||..+ ||...+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f---YY~wKkt~ 58 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITF---YYYWKKTS 58 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHH---HHHHHCSS
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHH---HhcccCCC
Confidence 45556789999999999999999999 999999657999999999876 67665443
No 20
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.33 E-value=2.2e-12 Score=100.48 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=48.2
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 86 TKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 86 ~~~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
......++++||+|||++|++++++||. +|..||+ +|++||+.||+.||++|+.
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHTS
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhcc
Confidence 3456677899999999999999999999 9999996 9999999999999988864
No 21
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=4.4e-12 Score=94.44 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhh---hcCCCCHHHHHHHHHHHHHHhc
Q 048263 94 KPWTEAEHRVFLEGLKLLGKGDWKGISKN---FVTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 94 ~~WTeEEh~~FL~gLkkyGkGdWk~IAk~---~V~TRT~~QVrsHaQKYf~rl~ 144 (207)
.+||+||+++|++|+++||.|+|+.|++. ++++||..||+.+|.+++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999974 3789999999999999876544
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=1.8e-12 Score=98.30 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
+++||+|||++|+++|++||.++|..||+ +|++||+.||+.||.+|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHHc
Confidence 36899999999999999999999999996 9999999999999888753
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.30 E-value=4.7e-12 Score=96.00 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
+.++||+|||.+|++++++||. +|..||+ +|++||+.||+.||..+..+..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHH
Confidence 4689999999999999999998 9999996 99999999999999988776544
No 24
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=7.6e-12 Score=97.03 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=49.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHhc
Q 048263 88 HERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNF---VTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 88 ~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~---V~TRT~~QVrsHaQKYf~rl~ 144 (207)
..++++.+||+||+++|++||++||.|+|+.|++.+ +.+||..||+.+|.+++....
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 567788999999999999999999999999999733 279999999999998876543
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.28 E-value=3.1e-12 Score=100.14 Aligned_cols=48 Identities=29% Similarity=0.436 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
+++||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhccC
Confidence 47999999999999999999889999996 9999999999999988864
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.27 E-value=4.7e-12 Score=98.43 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=45.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~ 141 (207)
.++++||+|||++|++++++||.++|..||+ +|++||..||+.||++|+.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhcc
Confidence 3568999999999999999999989999996 9999999999999887753
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.26 E-value=1.5e-11 Score=97.67 Aligned_cols=57 Identities=23% Similarity=0.429 Sum_probs=50.3
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHhc
Q 048263 88 HERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNF---VTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 88 ~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~---V~TRT~~QVrsHaQKYf~rl~ 144 (207)
..++++.+||+||++.|++|+++||.|+|+.|++.+ +..||..||+.+|.+++..-.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 466788999999999999999999999999999743 389999999999999986543
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.24 E-value=7.8e-12 Score=93.84 Aligned_cols=48 Identities=29% Similarity=0.579 Sum_probs=44.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
.+.++||+|||++|++++++||. +|..||+ +|++||+.||++||..++
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 9999996 999999999999988664
No 29
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=90.46 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=41.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHH
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQ 137 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQ 137 (207)
..++++||+|||++|++++++||. +|..||+ ++ +||..||++||.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 345789999999999999999999 6999997 88 999999999976
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.23 E-value=1.6e-11 Score=95.59 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=47.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
.+.++||+|||++|++++++||. +|..||+ +|++||..||++||..+..++...
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHhcCCC
Confidence 34679999999999999999997 9999996 999999999999998887776443
No 31
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.23 E-value=1.6e-11 Score=97.38 Aligned_cols=57 Identities=19% Similarity=0.413 Sum_probs=50.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh---cCCCCHHHHHHHHHHHHHHhc
Q 048263 88 HERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNF---VTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 88 ~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~---V~TRT~~QVrsHaQKYf~rl~ 144 (207)
..++++.+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++....
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 467788999999999999999999999999999743 489999999999999987543
No 32
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.22 E-value=6.9e-12 Score=118.33 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=49.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
.+...+||+||+.+|++||.+||+ ||+.||+ +|+|||..||++||++|+.++..
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhCh
Confidence 356799999999999999999999 9999996 99999999999999998776654
No 33
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=1.7e-11 Score=92.98 Aligned_cols=51 Identities=27% Similarity=0.602 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKG---DWKGISKNFVTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkG---dWk~IAk~~V~TRT~~QVrsHaQKYf~rl~ 144 (207)
..+||.||+.+|++||.+||++ +|..||+ +|++||..||+.||++++....
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999853 6999996 9999999999999999876653
No 34
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.21 E-value=3.3e-11 Score=86.66 Aligned_cols=54 Identities=22% Similarity=0.500 Sum_probs=46.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
.|+....||+||+.+|++||.+||+ ||..|++++|++||..||..+ ||...+..
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f---YY~wKkt~ 57 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEY---YYMWKTTD 57 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHH---HHHHHTCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHH---HHhhcCCc
Confidence 4567889999999999999999999 999999657999999999987 55554443
No 35
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.19 E-value=5.2e-11 Score=85.41 Aligned_cols=55 Identities=31% Similarity=0.402 Sum_probs=48.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCC---HHHHHhhhcC--CCCHHHHHHHHHHHHHHhcc
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGKGD---WKGISKNFVT--TRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGkGd---Wk~IAk~~V~--TRT~~QVrsHaQKYf~rl~~ 145 (207)
.++.+..||+|+|+.|++||+++| ++ |+.|.+ +++ +.|..||+||.|||+.++.+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 567889999999999999999999 45 899986 755 67999999999999998865
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.16 E-value=4.9e-11 Score=93.29 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=47.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
.+.++||+|||++|++++++||. +|..||+ +|++||..||++||+.++.+...
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGGCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHhh
Confidence 34679999999999999999997 9999996 99999999999998888765543
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.15 E-value=2.7e-11 Score=94.14 Aligned_cols=48 Identities=31% Similarity=0.581 Sum_probs=43.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
.+.++||+|||++|++++++||. +|..||+ +|++||+.||++||..++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 9999996 999999999999977543
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.12 E-value=6.1e-11 Score=95.01 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
.+.++||+|||++|++++++||.++|..||+ +|++||+.||+.||++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999889999996 999999999999988875
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.08 E-value=9.5e-11 Score=85.86 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 048263 93 GKPWTEAEHRVFLEGLKLLGK---GDWKGISKNFVTTRTPTQVASHAQKY 139 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGk---GdWk~IAk~~V~TRT~~QVrsHaQKY 139 (207)
...||+||+.+|++||..|++ ++|..||. +|++||..||+.||+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 357999999999999999997 57999996 99999999999997654
No 40
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.04 E-value=3.9e-10 Score=81.84 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKG---DWKGISKNFVTTRTPTQVASHAQKY 139 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkG---dWk~IAk~~V~TRT~~QVrsHaQKY 139 (207)
....||+||+.+|..||.+|+.| +|..||+ ++ +||..||+.||+++
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence 35789999999999999999964 6999996 88 79999999998876
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.01 E-value=2.1e-10 Score=91.85 Aligned_cols=47 Identities=30% Similarity=0.580 Sum_probs=43.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHH
Q 048263 91 KRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKY 139 (207)
Q Consensus 91 k~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKY 139 (207)
.+..+||+|||++|++++++||. +|..||+ +|++||..||++||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHHH-HCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998 9999996 99999999999997754
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.97 E-value=8.2e-10 Score=78.88 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhh--hcCCCCHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKN--FVTTRTPTQVASHAQKY 139 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~--~V~TRT~~QVrsHaQKY 139 (207)
.+.+||+||++.|++|+++||. +|+.|+.+ |+..||...++++|...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 5789999999999999999999 99999942 78899999999987654
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.96 E-value=6.1e-10 Score=84.18 Aligned_cols=63 Identities=24% Similarity=0.478 Sum_probs=50.6
Q ss_pred CCccCCCCCCccccccCCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 048263 76 EGYLSDGPIHTKHERKRGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 76 ~GY~sd~~~~~~~~rk~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~ 144 (207)
.|.+.| ..+.-+.++....||+||+++|.+++.+||+ +|..||+ +|++||..||..+ ||...+
T Consensus 27 n~lv~d-p~~~~~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~l~~Kt~~~cV~~---YY~~Kk 89 (94)
T 4a69_C 27 NGLMAD-PMKVYKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-FLERKTVAECVLY---YYLTKK 89 (94)
T ss_dssp TSBBSC-HHHHHHHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHH-TCTTCCHHHHHHH---HHHHSC
T ss_pred CCcccC-HHHHHhccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHH-HcCCCCHHHHHHH---Hhcccc
Confidence 455544 2222256678899999999999999999999 9999995 9999999999987 665543
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.82 E-value=4.5e-10 Score=82.76 Aligned_cols=47 Identities=34% Similarity=0.702 Sum_probs=40.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCC---CHHHHHhhhcCCCCHHHHHHHHH
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGKG---DWKGISKNFVTTRTPTQVASHAQ 137 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGkG---dWk~IAk~~V~TRT~~QVrsHaQ 137 (207)
+.....||.||+.+|..||.+|+++ +|.+||. +|++||+.||+.|||
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 4446789999999999999999986 8999996 999999999999976
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.78 E-value=3.2e-09 Score=92.99 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGD-----WKGISKNFVTTRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGd-----Wk~IAk~~V~TRT~~QVrsHaQKYf~rl 143 (207)
.+.+||+|||+++|+.+++||..+ |..||+ ++++||..||++||..|+.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhh
Confidence 467999999999999999999854 999997 999999999999999998664
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.11 E-value=2.7e-06 Score=59.28 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 93 GKPWTEAEHRVFLEGLKLL--------GKGDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkky--------GkGdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
+.+||+|||..+++-|.+| |..-|+.|++..++.+|-.++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5799999999999999999 76789999964799999999999988864
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.63 E-value=4.5e-05 Score=68.41 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHh-----------hhcCCCCHHHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGK---GDWKGISK-----------NFVTTRTPTQVASHAQKYFL 141 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGk---GdWk~IAk-----------~~V~TRT~~QVrsHaQKYf~ 141 (207)
++..||+|||+.||-+|.+||. |+|..|.. .|+.+||+.++..|++--+.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999 99999962 37889999999999985543
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.61 E-value=0.0007 Score=51.79 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=44.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCC--CCHHHHHhhhcCCCCHHHHHHHHHHHH
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLGK--GDWKGISKNFVTTRTPTQVASHAQKYF 140 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyGk--GdWk~IAk~~V~TRT~~QVrsHaQKYf 140 (207)
.-....-||.|||+.+|.+.++-|. .-|..||+ .+++|++.||++|.|..+
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHH
Confidence 3445789999999999999999985 58999997 999999999999988654
No 49
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.59 E-value=0.00014 Score=55.21 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhc-----CCCCHHHHHHHHHHHHHHhc
Q 048263 94 KPWTEAEHRVFLEGLKLLGKGDWKGISKNFV-----TTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 94 ~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V-----~TRT~~QVrsHaQKYf~rl~ 144 (207)
.+||.||...|++.+++||. .|-.|+. .. +.||..++++|+-..-.++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999 9999996 66 58999999999655444443
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.58 E-value=9.8e-06 Score=76.67 Aligned_cols=41 Identities=15% Similarity=0.419 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHH
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASH 135 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsH 135 (207)
...||+||..+|.+||.+||+ +|..|++ +|++||..||-.+
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~-~lp~Ksv~e~V~y 229 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQ-MLPDKSIASLVKF 229 (482)
T ss_dssp -------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHH-HcCCCCHHHHHHH
Confidence 458999999999999999999 9999996 9999999999877
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.50 E-value=0.00019 Score=64.37 Aligned_cols=50 Identities=24% Similarity=0.451 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 048263 94 KPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 94 ~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~ 144 (207)
..||..|-..|+.|+.+||..+|..||. .|+++|+.+|+.|++-|+.+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry~ 160 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERCT 160 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHGG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhHH
Confidence 3599999999999999999999999996 9999999999999998887763
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.02 E-value=0.00081 Score=48.70 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=43.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCC---------CCHHHHHhhhcC----CCCHHHHHHHHHHHHHHhccc
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGK---------GDWKGISKNFVT----TRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGk---------GdWk~IAk~~V~----TRT~~QVrsHaQKYf~rl~~~ 146 (207)
++....||.+|-.+||++....-. ..|..||. .+. .||+.||+..|..........
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk~~ 69 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFKKA 69 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999876321 27999996 544 799999999988665555443
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.93 E-value=0.0012 Score=54.22 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=43.1
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhC--CCCHHHHHhhh-cCCCCHHHHHHHHHHHHHHh
Q 048263 89 ERKRGKPWTEAEHRVFLEGLKLLG--KGDWKGISKNF-VTTRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 89 ~rk~~~~WTeEEh~~FL~gLkkyG--kGdWk~IAk~~-V~TRT~~QVrsHaQKYf~rl 143 (207)
.+.....||+.|-+.|+.|+.+|| .++|..|+++. +..||..+|+..++.+..+-
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 345678999999999999999999 68999998622 66899999999888776553
No 54
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.93 E-value=0.00015 Score=52.76 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCHHHHHhhhcCCCCHHHHHHHHHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGK--GDWKGISKNFVTTRTPTQVASHAQKY 139 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGk--GdWk~IAk~~V~TRT~~QVrsHaQKY 139 (207)
...-||.|||+.+|...++-|. .-|..||+ .+ +||+.||..|+|..
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 3578999999999999999985 58999997 66 89999999997764
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.81 E-value=0.00082 Score=55.15 Aligned_cols=50 Identities=20% Similarity=0.434 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhh-------------cCCCCHHHHHHHHHHHHHHh
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKGDWKGISKNF-------------VTTRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~-------------V~TRT~~QVrsHaQKYf~rl 143 (207)
...||+|||..||.||.+||.|+|..|-.+- ..+++..++..|+. |++++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHH
Confidence 4579999999999999999999999996421 23566678888876 44443
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.35 E-value=0.0023 Score=56.38 Aligned_cols=28 Identities=32% Similarity=0.659 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHh
Q 048263 94 KPWTEAEHRVFLEGLKLLGKGDWKGISK 121 (207)
Q Consensus 94 ~~WTeEEh~~FL~gLkkyGkGdWk~IAk 121 (207)
..|+.+||..||.||-+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5799999999999999999999999964
No 57
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.29 E-value=0.0097 Score=45.26 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhc----CCCCHHHHHHHHHHHHHHhcc
Q 048263 94 KPWTEAEHRVFLEGLKLLGKGDWKGISKNFV----TTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 94 ~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V----~TRT~~QVrsHaQKYf~rl~~ 145 (207)
..||.||-..|++.+++|+. +|-.|+.-|- ..||..+++.|+-..-.++..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998 9999997443 379999999997666555544
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.57 E-value=0.021 Score=52.63 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcC-CCCHHHHHHHHHHHHHHhcc
Q 048263 94 KPWTEAEHRVFLEGLKLLGKGDWKGISKNFVT-TRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 94 ~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~-TRT~~QVrsHaQKYf~rl~~ 145 (207)
..||..|=..|+.|+.+||..+...||. .|. ++|+.+|+.+++-|+.|...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry~E 175 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNIER 175 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhhhh
Confidence 3699999999999999999999999996 887 99999999998888877654
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.88 E-value=0.038 Score=50.86 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHh-----------hhcCCCCHHHHHHHHHHHHHHh
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGK---GDWKGISK-----------NFVTTRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGk---GdWk~IAk-----------~~V~TRT~~QVrsHaQKYf~rl 143 (207)
++..||+|||+.||-+|-+||. |+|..|-. -|+.+||+.++..|..-.+.-+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 99999932 2378999999999987554433
No 60
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=94.54 E-value=0.019 Score=33.60 Aligned_cols=19 Identities=37% Similarity=0.929 Sum_probs=17.6
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
++|-.||..||-+|.|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799999999999999976
No 61
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.96 E-value=0.093 Score=45.98 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=25.6
Q ss_pred CHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 048263 115 DWKGISKNFVTTRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 115 dWk~IAk~~V~TRT~~QVrsHaQKYf~rl 143 (207)
-|+.||+ +++.||...+|.+|.|++.+.
T Consensus 173 ~fk~ia~-~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAE-EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence 6999997 999999999999999987666
No 62
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=92.87 E-value=0.17 Score=37.64 Aligned_cols=49 Identities=29% Similarity=0.449 Sum_probs=36.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCC-CCH--------------HHHHhhhc-----CCCCHHHHHHHHHHH
Q 048263 90 RKRGKPWTEAEHRVFLEGLKLLGK-GDW--------------KGISKNFV-----TTRTPTQVASHAQKY 139 (207)
Q Consensus 90 rk~~~~WTeEEh~~FL~gLkkyGk-GdW--------------k~IAk~~V-----~TRT~~QVrsHaQKY 139 (207)
.....-|.++=|..|++||+.|-. |.| ..||. || ..||.+||-+|-|-.
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~-yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHH-HHHHHHSCCCCSHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHH-HHHHHHcccCCccchhHHHHHH
Confidence 345789999999999999999874 222 23442 43 489999999997743
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=90.97 E-value=0.099 Score=31.05 Aligned_cols=19 Identities=42% Similarity=1.095 Sum_probs=17.0
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
.+|-.||..||-+|.|+..
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4799999999999999864
No 64
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=90.09 E-value=0.15 Score=32.91 Aligned_cols=19 Identities=32% Similarity=0.863 Sum_probs=17.4
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
-+|-.||..||-+|+||..
T Consensus 11 ~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSS
T ss_pred CeeeECCCCCcchhhCcCC
Confidence 3799999999999999987
No 65
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=86.61 E-value=0.29 Score=30.13 Aligned_cols=17 Identities=47% Similarity=1.073 Sum_probs=10.3
Q ss_pred ccCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHA 19 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~ 19 (207)
+|--||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 45666666666666653
No 66
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=85.91 E-value=0.43 Score=29.68 Aligned_cols=16 Identities=31% Similarity=0.823 Sum_probs=7.9
Q ss_pred ccCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCH 18 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~ 18 (207)
.|-.||..||-+|.|+
T Consensus 23 ~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 23 GCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SCTTTCCSSSCTTTSC
T ss_pred ccccCCCCCCccCcCc
Confidence 3444555555555554
No 67
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.73 E-value=2.2 Score=37.38 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCCHHHHHhhh-cCCCCHHHHHHHHH
Q 048263 93 GKPWTEAEHRVFLEGLKLLG--KGDWKGISKNF-VTTRTPTQVASHAQ 137 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyG--kGdWk~IAk~~-V~TRT~~QVrsHaQ 137 (207)
.+.||+.|=+.|+.++.+|| .++|..|+++- +..|+...++.-++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 57899999999999999999 47999996432 66788877764443
No 68
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=85.57 E-value=0.33 Score=33.42 Aligned_cols=18 Identities=33% Similarity=0.916 Sum_probs=17.1
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~~ 20 (207)
+|-.||..||-+|.|+..
T Consensus 25 ~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 25 QCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp BCSSSCCBSSCGGGCTTC
T ss_pred cceeCCCCCcccccCcCC
Confidence 699999999999999987
No 69
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=84.74 E-value=0.51 Score=29.01 Aligned_cols=17 Identities=35% Similarity=0.899 Sum_probs=15.4
Q ss_pred ccCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHA 19 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~ 19 (207)
.|-.||..||-+|.|++
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 58899999999999985
No 70
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.25 E-value=0.61 Score=30.43 Aligned_cols=19 Identities=42% Similarity=1.095 Sum_probs=16.0
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
.+|-.||..||-++.|+..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 4788899999999999875
No 71
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=83.10 E-value=0.49 Score=31.28 Aligned_cols=17 Identities=47% Similarity=1.200 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHA 19 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~ 19 (207)
+|-.||..||-++.|+.
T Consensus 14 ~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp BCTTTCCBSSCGGGCSS
T ss_pred ceeeeCCCCcChhhcCC
Confidence 45566666666666654
No 72
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=82.69 E-value=0.59 Score=29.04 Aligned_cols=18 Identities=39% Similarity=1.062 Sum_probs=16.5
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~~ 20 (207)
+|-.||..||-+|.|+..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 689999999999999975
No 73
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=82.10 E-value=0.64 Score=30.31 Aligned_cols=19 Identities=32% Similarity=0.877 Sum_probs=16.9
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||-+|.|+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3699999999999999975
No 74
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=80.95 E-value=0.75 Score=31.24 Aligned_cols=18 Identities=33% Similarity=1.025 Sum_probs=12.9
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~~ 20 (207)
+|-.||..||-+|.|+..
T Consensus 32 ~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp BCTTTCCBSSCGGGCCCC
T ss_pred eeCCCCCCCCCcCCCcCC
Confidence 477777777777777765
No 75
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=79.06 E-value=0.89 Score=29.98 Aligned_cols=19 Identities=32% Similarity=1.025 Sum_probs=17.1
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||-+|.|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4699999999999999975
No 76
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=77.95 E-value=1.4 Score=29.56 Aligned_cols=19 Identities=26% Similarity=0.699 Sum_probs=14.2
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||-+|.|+..
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCT
T ss_pred cceeECCCCCCccCcCCCc
Confidence 4577788888888888765
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=73.29 E-value=0.7 Score=31.04 Aligned_cols=19 Identities=37% Similarity=1.048 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
++|-.||..||-+|.|+..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 5799999999999999976
No 78
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=73.15 E-value=1.5 Score=29.67 Aligned_cols=19 Identities=37% Similarity=0.828 Sum_probs=17.5
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
.+|-.||..||-+|.|+..
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTT
T ss_pred CcccccCCCCeehhhCcCC
Confidence 5799999999999999986
No 79
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.37 E-value=2.4 Score=28.92 Aligned_cols=19 Identities=26% Similarity=0.845 Sum_probs=16.3
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
.+|-.||..||-+|.|+..
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSC
T ss_pred CcccccCCCCcChhhCCCC
Confidence 4688999999999999864
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.71 E-value=2.1 Score=29.26 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=17.2
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
.+|-.||..||-+|.|+..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 4789999999999999976
No 81
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=69.20 E-value=5.8 Score=29.97 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCHHHHHhhhcCCCCHHHHHHHHHHHHHHh
Q 048263 114 GDWKGISKNFVTTRTPTQVASHAQKYFLRQ 143 (207)
Q Consensus 114 GdWk~IAk~~V~TRT~~QVrsHaQKYf~rl 143 (207)
+.|+.|++ .++-....+++.||.+|+...
T Consensus 71 ~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 71 QQWSMVAQ-RLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp TCHHHHHH-HHTSCCTTHHHHHHHHHHSHH
T ss_pred CcHHHHHH-HhCCChHHHHHHHHHHHHHHH
Confidence 58999997 777666899999999997544
No 82
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=68.47 E-value=2.1 Score=30.48 Aligned_cols=17 Identities=29% Similarity=0.962 Sum_probs=12.5
Q ss_pred ccCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHA 19 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~ 19 (207)
+|-.||..||-++.|+.
T Consensus 26 ~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 26 RCYNCGGLDHHAKECKL 42 (74)
T ss_dssp CCTTTCCSSSCTTTCSS
T ss_pred cccccCCcCcCcccCCC
Confidence 57777777777777773
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=66.34 E-value=3.1 Score=29.58 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=17.2
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||-+|.|+..
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTG
T ss_pred CccCCcCCcCCccCcCcCC
Confidence 4789999999999999976
No 84
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=66.22 E-value=2.6 Score=30.71 Aligned_cols=19 Identities=37% Similarity=0.854 Sum_probs=17.4
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||=+|.|+..
T Consensus 47 ~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSC
T ss_pred CeecccCCCCcCcccCCcc
Confidence 4699999999999999987
No 85
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=64.72 E-value=2.6 Score=33.45 Aligned_cols=18 Identities=28% Similarity=0.898 Sum_probs=16.7
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 048263 3 KCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 3 ~cs~cg~~ghnsrtc~~~ 20 (207)
+|-.||..||-+|.|+..
T Consensus 99 ~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 99 RCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCTTTCCSSCCGGGCCSC
T ss_pred cccEeCCccchhhhCCCC
Confidence 699999999999999975
No 86
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.60 E-value=20 Score=27.29 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=24.0
Q ss_pred CCHHHHHhhhcCCCC----HHHHHHHHHHHHHHhccc
Q 048263 114 GDWKGISKNFVTTRT----PTQVASHAQKYFLRQASS 146 (207)
Q Consensus 114 GdWk~IAk~~V~TRT----~~QVrsHaQKYf~rl~~~ 146 (207)
+.|+.|++ .++-.. ..+++.||++|+......
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~ 99 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNLF 99 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 58999997 665432 468999999998776654
No 87
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=63.18 E-value=12 Score=27.57 Aligned_cols=31 Identities=6% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCHHHHHhhhcCCCC----HHHHHHHHHHHHHHhcc
Q 048263 114 GDWKGISKNFVTTRT----PTQVASHAQKYFLRQAS 145 (207)
Q Consensus 114 GdWk~IAk~~V~TRT----~~QVrsHaQKYf~rl~~ 145 (207)
+.|+.|++ .++--. ..+++.||.+|+.....
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 48999997 665433 57899999999766543
No 88
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=63.02 E-value=3.7 Score=30.94 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=15.1
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||.+|.||..
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCS
T ss_pred ccCCCCCcCCcchhhCCCc
Confidence 3678888888888888866
No 89
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=62.18 E-value=10 Score=28.65 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=28.3
Q ss_pred HHHHHHHhC-------CCCHHHHHhhhcCCCC----HHHHHHHHHHHHHHhcc
Q 048263 104 FLEGLKLLG-------KGDWKGISKNFVTTRT----PTQVASHAQKYFLRQAS 145 (207)
Q Consensus 104 FL~gLkkyG-------kGdWk~IAk~~V~TRT----~~QVrsHaQKYf~rl~~ 145 (207)
|-..|.+.| .+.|+.|++ .++--. ..+++.||.+|+.....
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 444556666 358999997 665432 67899999999765544
No 90
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=60.49 E-value=2.8 Score=30.52 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=16.7
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||-++.||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 3699999999999999975
No 91
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=58.96 E-value=11 Score=28.68 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCHHHHHhhhcCCCC----HHHHHHHHHHHHHHhccc
Q 048263 114 GDWKGISKNFVTTRT----PTQVASHAQKYFLRQASS 146 (207)
Q Consensus 114 GdWk~IAk~~V~TRT----~~QVrsHaQKYf~rl~~~ 146 (207)
+.|+.|++ .++--+ ..+++.+|.+|+......
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 59999997 665433 478999999997766554
No 92
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=55.58 E-value=9 Score=29.51 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=25.6
Q ss_pred CCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcc
Q 048263 114 GDWKGISKNFVTTRTPTQVASHAQKYFLRQAS 145 (207)
Q Consensus 114 GdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~ 145 (207)
+.|+.|++ -++--...+++.+|.+|+.....
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHHH
Confidence 48999997 67666699999999999877654
No 93
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.22 E-value=5.2 Score=27.25 Aligned_cols=19 Identities=32% Similarity=0.873 Sum_probs=17.1
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|=-||..||-.+-|++.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGG
T ss_pred CccccCCCcCcccccCCCC
Confidence 4699999999999999966
No 94
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=53.67 E-value=6.5 Score=29.52 Aligned_cols=19 Identities=32% Similarity=0.863 Sum_probs=12.5
Q ss_pred CccCCCCCCCCCCCCCCCC
Q 048263 2 RKCSHCGHNGHNSRTCHAK 20 (207)
Q Consensus 2 r~cs~cg~~ghnsrtc~~~ 20 (207)
..|-.||..||.+|.||..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC
T ss_pred CcccCCCCCCcCcccCcCC
Confidence 3566677777777777653
No 95
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=48.84 E-value=11 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=21.9
Q ss_pred CCHHHHHhhhcCC-----CCHHHHHHHHHHHHHHhc
Q 048263 114 GDWKGISKNFVTT-----RTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 114 GdWk~IAk~~V~T-----RT~~QVrsHaQKYf~rl~ 144 (207)
+.|+.|++ -++- -...+++.||++|+....
T Consensus 55 ~~W~~Va~-~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 55 RQWKHIYD-ELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp TTHHHHHH-HHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 58999997 5552 234789999999965543
No 96
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=48.23 E-value=8.3 Score=27.85 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCHHHHHhhhcCCC----CHHHHHHHHHHHHHHh
Q 048263 114 GDWKGISKNFVTTR----TPTQVASHAQKYFLRQ 143 (207)
Q Consensus 114 GdWk~IAk~~V~TR----T~~QVrsHaQKYf~rl 143 (207)
+.|+.|++ .++-- ...+++.||++|+...
T Consensus 58 ~~W~~v~~-~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 58 KKWSKVGS-RLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp TTHHHHHH-HHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHH-HhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 58999997 55532 2578999988886554
No 97
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=44.26 E-value=25 Score=27.10 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCHHHHHhhhcCC-C----CHHHHHHHHHHHHHHhccc
Q 048263 114 GDWKGISKNFVTT-R----TPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 114 GdWk~IAk~~V~T-R----T~~QVrsHaQKYf~rl~~~ 146 (207)
+.|+.|++ -++- . ...+++.||.||+......
T Consensus 64 k~W~~Va~-~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~ 100 (121)
T 2rq5_A 64 KKWNKLAD-MLRIPKTAQDRLAKLQEAYCQYLLSYDSL 100 (121)
T ss_dssp TCHHHHHH-HTCCCTTCSSHHHHHHHHHHTTHHHHHHC
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHhHHHHCc
Confidence 59999997 5542 2 2578999999998766543
No 98
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=43.92 E-value=37 Score=25.79 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCHHHHHhhhcCC-C----CHHHHHHHHHHHHHHhccc
Q 048263 114 GDWKGISKNFVTT-R----TPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 114 GdWk~IAk~~V~T-R----T~~QVrsHaQKYf~rl~~~ 146 (207)
+.|+.|++ .++- . ...+++.||.+|+......
T Consensus 74 k~W~~Va~-~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~ 110 (128)
T 1c20_A 74 KLWQEIIK-GLHLPSSITSAAFTLRTQYMKYLYPYECE 110 (128)
T ss_dssp TTHHHHHH-HTCCCSSCCSHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 58999997 5552 2 2589999999998766544
No 99
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.37 E-value=24 Score=27.61 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCHHHHHhhhcCC-C----CHHHHHHHHHHHHHHhccc
Q 048263 114 GDWKGISKNFVTT-R----TPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 114 GdWk~IAk~~V~T-R----T~~QVrsHaQKYf~rl~~~ 146 (207)
+.|+.|++ -++- . ...+++.+|.+|+......
T Consensus 86 ~~W~~Va~-~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 86 KLWREITK-GLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp TCHHHHHH-HTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 58999997 5553 2 2579999999997655443
No 100
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=41.77 E-value=76 Score=23.68 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=36.9
Q ss_pred ccccCCCCCCHHH-----------HHHHHHHHHHhCC----------CCHHHHHhhhcCCCCHHHHHHHHHHHHHHhc
Q 048263 88 HERKRGKPWTEAE-----------HRVFLEGLKLLGK----------GDWKGISKNFVTTRTPTQVASHAQKYFLRQA 144 (207)
Q Consensus 88 ~~rk~~~~WTeEE-----------h~~FL~gLkkyGk----------GdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~ 144 (207)
.+.-+++.||.|+ -.-++.-|+.+|. |+=+.|+ .|+...|...-|.++|-.-.
T Consensus 8 ~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVa----KtanK~qLiaAY~~lfE~~~ 81 (88)
T 2lc3_A 8 KENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIR----KNRNCSQLIAAYKDFCEHGT 81 (88)
T ss_dssp HCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHH----HHSCHHHHHHHHHHHHHHTC
T ss_pred cccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHH----hcCcHHHHHHHHHHHHhccc
Confidence 4566789999999 3345555666653 4555555 47889999998888886543
No 101
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=37.38 E-value=14 Score=28.74 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKG 118 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~ 118 (207)
++.+|++||..+++++-..+|. .|.+
T Consensus 78 rg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 78 RGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred CCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 3569999999999999999997 5544
No 102
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=31.20 E-value=33 Score=26.68 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=21.5
Q ss_pred CCCCCHHHH-HHHHHHHHHhCCCCHHH
Q 048263 93 GKPWTEAEH-RVFLEGLKLLGKGDWKG 118 (207)
Q Consensus 93 ~~~WTeEEh-~~FL~gLkkyGkGdWk~ 118 (207)
...|||||= ++||+|++.--.-+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 468999995 67889998888889984
No 103
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=29.91 E-value=98 Score=20.14 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhhhcCC
Q 048263 98 EAEHRVFLEGLKLLGKGDWKGISKNFVTT 126 (207)
Q Consensus 98 eEEh~~FL~gLkkyGkGdWk~IAk~~V~T 126 (207)
+-|.+.+.++|+.+|. ++...|+ .++-
T Consensus 18 ~~E~~~i~~aL~~~~g-n~~~aA~-~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDY-DLKRTAE-EIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHH-HHTC
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHH-HHCc
Confidence 3578889999999984 9999997 6654
No 104
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=29.73 E-value=13 Score=33.34 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHH---------HhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccccccCCCccc
Q 048263 93 GKPWTEAEHRVFLEGLK---------LLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRRTSLFD 157 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLk---------kyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~~k~krrsSl~d 157 (207)
..|=.+.-...|..-|+ .+|+|-|+.|-- .||++||...|...++..|.++..+..+
T Consensus 191 ~~pi~D~~~kelvAelRwqyNkFAvItHGkgHyRvV~y--------s~v~nHAdRv~at~ks~~K~~~~~~f~~ 256 (312)
T 2gu0_A 191 KTDIPDRNQTAFAAYIRYNFNKFAAISHGKRHWRLVLH--------SQLMSHAERLDRKIKSDKKHGRQFSYDD 256 (312)
T ss_dssp SSCCCHHHHHHHHHHHHHHSTTEEEECSSSSEEEEEEG--------GGHHHHHHHHHHHHHCCC-------CCC
T ss_pred CCcCchHHHHHHHHHHHHhhcceEEEecCCccEEEEeh--------HHhhhhHHHHHHHHhhhhhcCCCccccc
Confidence 34444444445554444 278889988762 6899999999999999888776544443
No 105
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=28.30 E-value=13 Score=33.28 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHH---------hCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccccccccCCCcccC
Q 048263 92 RGKPWTEAEHRVFLEGLKL---------LGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSDKKNRRTSLFDM 158 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkk---------yGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~~k~krrsSl~d~ 158 (207)
...|=.+.+-..|..-|+= +|+|-|+.|-- .||++||...|...++..|.++..+..+.
T Consensus 193 ~~~pi~d~~~kelvAelRwqyNkFAvItHGkgHyRvV~y--------s~v~nHAdRv~at~ks~~K~~~~~~fn~l 260 (317)
T 4g0a_A 193 EDKPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVKY--------SSVANHADRVYATFKSNVKTGVNNDFNLL 260 (317)
T ss_dssp CSSCCCHHHHHHHHHHHHHHCTTEEEECCSSSSEEEEEG--------GGHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcceEEEecCCccEEEEeh--------HHhhhhHHHHHHHHhhhhccCCCcchhhc
Confidence 4455666666666666653 78999988862 68999999999999998887766554443
No 106
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.52 E-value=1.2e+02 Score=20.55 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
-...|+.|-+.|.. + ..|. ..++||+ .+ .-+...|+.|-.+-+.++...
T Consensus 19 ~~~Lt~~e~~vl~l-~-~~g~-s~~eIA~-~l-~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKL-I-AQGL-PNKMIAR-RL-DITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHH-H-TTTC-CHHHHHH-HH-TSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHH-H-HcCC-CHHHHHH-HH-CcCHHHHHHHHHHHHHHHcCC
Confidence 34588988888776 4 5676 9999996 44 468888998877777776543
No 107
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.80 E-value=1.3e+02 Score=20.99 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhcccc
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASSD 147 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~~ 147 (207)
....-|+.|-+.|.... -|. .-++||+ .-.-+..-|+.|..+-+.++.-.+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~-s~~eIA~--~L~iS~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGF-TNQEIAD--ALHLSKRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTC-CHHHHHH--HHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred cccCCCHHHHHHHHHHH--cCC-CHHHHHH--HHCcCHHHHHHHHHHHHHHHCCCC
Confidence 45667888888776544 777 9999996 445688999999998888876543
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.28 E-value=1.4e+02 Score=19.36 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 96 WTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 96 WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
+|+.|-+.|.. + ..|. ..++||+ . -.-+...|+.|..+-+.++...
T Consensus 17 L~~~e~~vl~l-~-~~g~-s~~eIA~-~-l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 17 LSERERQVLSA-V-VAGL-PNKSIAY-D-LDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HCHHHHHHHHH-H-TTTC-CHHHHHH-H-TTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHH-H-HcCC-CHHHHHH-H-HCcCHHHHHHHHHHHHHHHcCC
Confidence 57777777665 4 5566 9999996 4 4558889998877777766543
No 109
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=24.46 E-value=1.8e+02 Score=20.17 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
-...|+.|-+.|.. + ..|. .-++||+ .+ .-+..-|+.|..+-+.++...
T Consensus 25 l~~Lt~~e~~vl~l-~-~~g~-s~~eIA~-~l-~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 25 LSGLTDQERTLLGL-L-SEGL-TNKQIAD-RM-FLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp --CCCHHHHHHHHH-H-HTTC-CHHHHHH-HH-TCCHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCHHHHHHHHH-H-HcCC-CHHHHHH-HH-CcCHHHHHHHHHHHHHHHcCC
Confidence 34688888888877 4 6777 8999996 44 458899999888877777554
No 110
>4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A*
Probab=23.05 E-value=33 Score=28.28 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCC
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRT 128 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT 128 (207)
.+..|+++=-.+|-+.+++.-.|.|+++.+ |-.+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~ 55 (211)
T 4ae8_A 20 PNPSWNKDLRLLFDQFMKKCEDGSWKRLPS-YKRTPT 55 (211)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTTSSEEEECC-BC----
T ss_pred CCCccCHHHHHHHHHHHhhCcCCCeEECcc-cccchh
Confidence 468899999999999999999999999997 665543
No 111
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.41 E-value=1.5e+02 Score=18.67 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHHHHHHhccc
Q 048263 92 RGKPWTEAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQKYFLRQASS 146 (207)
Q Consensus 92 ~~~~WTeEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQKYf~rl~~~ 146 (207)
....+|+.|-+.|.. + ..|. ..++||+ .++ -+..-|+.|..+-+.++...
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~-s~~eIA~-~l~-is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDK-TTKEIAS-ELF-ISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTC-CHHHHHH-HHT-SCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHH-H-HcCC-CHHHHHH-HHC-CCHHHHHHHHHHHHHHHCCC
Confidence 346688888888776 4 5566 9999996 554 48888988877777766543
No 112
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=20.53 E-value=55 Score=26.33 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC
Q 048263 93 GKPWTEAEHRVFLEGLKLLGKG 114 (207)
Q Consensus 93 ~~~WTeEEh~~FL~gLkkyGkG 114 (207)
--.||.||-.+.|++++.|..+
T Consensus 116 iLawS~eEaa~Yle~~k~~e~k 137 (146)
T 2a1i_A 116 ILAWSPEEAGRYLETYKAYEQK 137 (146)
T ss_dssp EEESSHHHHHHHHHHHHTCCSS
T ss_pred EEECCHHHHHHHHHHHHHhccC
Confidence 4579999999999999999874
No 113
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.48 E-value=2.4e+02 Score=21.75 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHhhhcCCCCHHHHHHHHHH
Q 048263 98 EAEHRVFLEGLKLLGKGDWKGISKNFVTTRTPTQVASHAQK 138 (207)
Q Consensus 98 eEEh~~FL~gLkkyGkGdWk~IAk~~V~TRT~~QVrsHaQK 138 (207)
.+-+..+|..|++.|.-.|.+||+ .++ -++..|+.|.++
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~-~lg-lS~~tv~~rl~~ 64 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISK-ITG-LAESTIHERIRK 64 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHH-HHT-SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHH-HHC-cCHHHHHHHHHH
Confidence 456778999999999889999997 666 488888877443
Done!