Query 048265
Match_columns 90
No_of_seqs 100 out of 263
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:55:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03151 TPT: Triose-phosphate 98.9 1.9E-09 4.2E-14 72.6 3.6 43 7-49 111-153 (153)
2 KOG1443 Predicted integral mem 98.7 1.3E-08 2.7E-13 81.7 4.9 42 6-47 272-313 (349)
3 KOG1441 Glucose-6-phosphate/ph 98.6 2E-09 4.4E-14 85.1 -2.7 49 7-55 265-313 (316)
4 PTZ00343 triose or hexose phos 98.4 2.3E-07 5E-12 72.3 4.5 45 7-51 306-350 (350)
5 TIGR00817 tpt Tpt phosphate/ph 98.4 1.7E-07 3.6E-12 70.3 1.9 47 7-53 251-297 (302)
6 COG2076 EmrE Membrane transpor 98.0 1E-05 2.2E-10 55.8 4.3 39 12-50 66-104 (106)
7 PRK09541 emrE multidrug efflux 98.0 1.4E-05 2.9E-10 54.7 4.7 40 12-51 66-105 (110)
8 PRK10452 multidrug efflux syst 97.9 1E-05 2.3E-10 56.3 3.8 46 5-51 60-105 (120)
9 PRK11431 multidrug efflux syst 97.9 1.7E-05 3.7E-10 53.9 4.2 39 12-50 65-103 (105)
10 PF08449 UAA: UAA transporter 97.9 1.8E-05 4E-10 60.0 4.5 48 7-54 255-302 (303)
11 PRK10650 multidrug efflux syst 97.9 2.2E-05 4.8E-10 53.8 4.4 38 12-49 71-108 (109)
12 PRK15051 4-amino-4-deoxy-L-ara 97.8 3.6E-05 7.8E-10 52.1 4.2 37 12-48 72-108 (111)
13 PF13536 EmrE: Multidrug resis 97.5 0.00021 4.6E-09 47.2 4.3 39 14-52 71-109 (113)
14 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.00037 8E-09 48.6 4.6 34 16-49 87-122 (129)
15 PF00892 EamA: EamA-like trans 97.3 0.00073 1.6E-08 42.7 4.9 40 9-48 86-125 (126)
16 PLN00411 nodulin MtN21 family 97.1 0.0012 2.6E-08 52.4 5.6 43 12-54 291-333 (358)
17 KOG1444 Nucleotide-sugar trans 96.9 0.0011 2.4E-08 53.1 3.7 49 7-56 258-307 (314)
18 COG2510 Predicted membrane pro 96.8 0.00083 1.8E-08 48.5 2.0 35 14-48 104-138 (140)
19 PRK10532 threonine and homoser 96.8 0.0035 7.5E-08 47.3 5.4 44 8-51 240-283 (293)
20 TIGR00803 nst UDP-galactose tr 96.8 0.0013 2.8E-08 47.6 3.0 43 5-47 180-222 (222)
21 PRK11272 putative DMT superfam 96.6 0.0038 8.2E-08 47.0 4.7 42 11-52 247-288 (292)
22 TIGR03340 phn_DUF6 phosphonate 96.4 0.0043 9.4E-08 46.3 3.9 33 14-46 248-280 (281)
23 PF00893 Multi_Drug_Res: Small 96.3 0.006 1.3E-07 39.8 3.5 35 5-40 59-93 (93)
24 PRK15430 putative chlorampheni 96.2 0.021 4.5E-07 43.1 6.7 44 9-52 245-288 (296)
25 PF06027 DUF914: Eukaryotic pr 96.2 0.0033 7.2E-08 50.1 2.3 39 14-52 270-308 (334)
26 PRK11689 aromatic amino acid e 96.2 0.0088 1.9E-07 45.1 4.4 39 11-49 249-287 (295)
27 TIGR03340 phn_DUF6 phosphonate 96.1 0.0083 1.8E-07 44.8 4.2 37 13-49 99-135 (281)
28 TIGR00688 rarD rarD protein. T 96.1 0.0084 1.8E-07 43.9 4.1 36 13-48 106-141 (256)
29 TIGR00950 2A78 Carboxylate/Ami 96.0 0.01 2.2E-07 42.8 3.8 36 14-49 84-119 (260)
30 PRK15430 putative chlorampheni 95.9 0.012 2.5E-07 44.5 4.2 36 13-48 109-144 (296)
31 PRK11453 O-acetylserine/cystei 95.9 0.013 2.7E-07 44.3 4.2 39 13-51 251-289 (299)
32 TIGR00950 2A78 Carboxylate/Ami 95.8 0.016 3.4E-07 41.8 4.3 39 7-45 222-260 (260)
33 TIGR00776 RhaT RhaT L-rhamnose 95.4 0.016 3.4E-07 44.2 3.2 44 8-51 243-290 (290)
34 TIGR00817 tpt Tpt phosphate/ph 95.3 0.038 8.3E-07 41.4 4.8 40 8-47 93-135 (302)
35 PF04142 Nuc_sug_transp: Nucle 95.2 0.019 4.1E-07 43.4 3.0 45 8-52 48-92 (244)
36 COG0697 RhaT Permeases of the 95.2 0.054 1.2E-06 38.6 5.2 40 11-50 249-288 (292)
37 PRK11689 aromatic amino acid e 95.1 0.026 5.6E-07 42.6 3.6 36 14-49 102-137 (295)
38 PRK11453 O-acetylserine/cystei 95.1 0.033 7.1E-07 42.0 4.0 35 15-49 98-132 (299)
39 PF06027 DUF914: Eukaryotic pr 95.1 0.014 3E-07 46.6 2.1 38 15-52 117-154 (334)
40 PTZ00343 triose or hexose phos 94.7 0.042 9.1E-07 43.0 3.9 34 15-48 152-185 (350)
41 PLN00411 nodulin MtN21 family 94.6 0.051 1.1E-06 43.2 4.1 38 14-51 115-158 (358)
42 KOG1581 UDP-galactose transpor 93.8 0.057 1.2E-06 43.7 3.0 42 12-53 276-317 (327)
43 PF08449 UAA: UAA transporter 93.6 0.052 1.1E-06 41.2 2.3 42 12-53 99-140 (303)
44 COG2962 RarD Predicted permeas 93.5 0.23 4.9E-06 39.7 5.9 44 12-55 246-289 (293)
45 PRK11272 putative DMT superfam 93.4 0.12 2.6E-06 38.9 4.0 35 14-49 107-141 (292)
46 KOG1580 UDP-galactose transpor 93.4 0.15 3.3E-06 40.9 4.7 37 13-49 277-313 (337)
47 KOG4510 Permease of the drug/m 93.1 0.048 1.1E-06 44.1 1.5 39 14-52 134-172 (346)
48 COG0697 RhaT Permeases of the 92.4 0.2 4.4E-06 35.6 3.7 39 14-52 107-146 (292)
49 PF10639 UPF0546: Uncharacteri 92.3 0.11 2.4E-06 36.1 2.2 33 14-46 79-111 (113)
50 TIGR00776 RhaT RhaT L-rhamnose 91.3 0.15 3.2E-06 38.9 2.2 36 16-51 99-138 (290)
51 PF08507 COPI_assoc: COPI asso 91.2 0.84 1.8E-05 31.5 5.7 40 12-52 69-108 (136)
52 PF06679 DUF1180: Protein of u 90.6 0.38 8.3E-06 35.3 3.7 52 35-90 102-154 (163)
53 PF04342 DUF486: Protein of un 90.2 0.41 9E-06 33.4 3.4 43 4-46 63-105 (108)
54 KOG2765 Predicted membrane pro 89.4 0.099 2.1E-06 43.5 -0.2 39 15-53 197-235 (416)
55 COG2962 RarD Predicted permeas 89.3 0.5 1.1E-05 37.8 3.6 33 15-47 110-142 (293)
56 KOG3912 Predicted integral mem 88.0 0.62 1.3E-05 38.1 3.4 44 7-50 292-335 (372)
57 COG3169 Uncharacterized protei 87.0 1.6 3.4E-05 30.7 4.5 44 4-47 70-113 (116)
58 KOG2234 Predicted UDP-galactos 86.6 1 2.3E-05 36.7 4.0 42 12-53 285-326 (345)
59 KOG2234 Predicted UDP-galactos 83.7 3.1 6.6E-05 34.0 5.4 42 7-48 122-163 (345)
60 PF05653 Mg_trans_NIPA: Magnes 81.5 1.6 3.4E-05 34.1 2.9 42 10-51 83-124 (300)
61 KOG1582 UDP-galactose transpor 81.1 2 4.4E-05 35.1 3.5 40 12-51 295-334 (367)
62 KOG1442 GDP-fucose transporter 80.7 1.2 2.5E-05 36.3 2.0 52 7-58 285-336 (347)
63 COG5006 rhtA Threonine/homoser 78.0 3.3 7.2E-05 33.2 3.8 33 15-47 248-280 (292)
64 COG5070 VRG4 Nucleotide-sugar 73.2 8.1 0.00018 30.9 4.8 48 8-55 255-302 (309)
65 PF07857 DUF1632: CEO family ( 72.9 2 4.3E-05 33.3 1.4 26 29-54 114-139 (254)
66 KOG1583 UDP-N-acetylglucosamin 72.0 3.4 7.4E-05 33.6 2.5 39 13-51 278-316 (330)
67 KOG2766 Predicted membrane pro 71.4 0.8 1.7E-05 37.0 -1.2 42 11-52 112-153 (336)
68 KOG3912 Predicted integral mem 70.9 4 8.7E-05 33.5 2.7 37 15-51 124-160 (372)
69 PF05653 Mg_trans_NIPA: Magnes 70.0 4.5 9.8E-05 31.6 2.7 39 13-51 250-294 (300)
70 PF06800 Sugar_transport: Suga 66.8 6.1 0.00013 31.0 2.9 37 15-51 84-124 (269)
71 PF13755 Sensor_TM1: Sensor N- 63.8 7.4 0.00016 25.6 2.4 21 31-51 20-40 (79)
72 PRK10746 putative transport pr 61.0 17 0.00037 29.3 4.5 30 32-61 430-459 (461)
73 PF05545 FixQ: Cbb3-type cytoc 60.7 18 0.00039 20.9 3.5 17 37-53 18-34 (49)
74 PF04142 Nuc_sug_transp: Nucle 60.7 8.7 0.00019 29.0 2.7 34 6-39 210-243 (244)
75 PF04156 IncA: IncA protein; 60.0 26 0.00056 24.8 4.9 21 32-52 38-58 (191)
76 PF04657 DUF606: Protein of un 55.8 15 0.00032 25.6 3.0 20 27-46 119-138 (138)
77 PRK02237 hypothetical protein; 55.0 21 0.00046 24.9 3.6 32 16-47 72-103 (109)
78 PRK13664 hypothetical protein; 54.6 24 0.00052 22.4 3.5 36 37-72 12-49 (62)
79 KOG2766 Predicted membrane pro 54.0 8.6 0.00019 31.2 1.7 26 23-48 273-298 (336)
80 PF07444 Ycf66_N: Ycf66 protei 53.7 16 0.00034 24.2 2.7 24 28-51 4-27 (84)
81 PRK02935 hypothetical protein; 53.4 33 0.00072 24.0 4.4 42 11-53 20-64 (110)
82 PF11381 DUF3185: Protein of u 53.4 3.5 7.7E-05 25.7 -0.4 17 33-49 1-17 (59)
83 PF13994 PgaD: PgaD-like prote 52.8 19 0.00041 25.0 3.1 29 29-57 61-89 (138)
84 PF13980 UPF0370: Uncharacteri 51.2 28 0.00061 22.2 3.4 36 37-72 11-48 (63)
85 PF02694 UPF0060: Uncharacteri 50.7 22 0.00049 24.7 3.2 33 15-47 69-101 (107)
86 TIGR00803 nst UDP-galactose tr 49.6 20 0.00043 25.7 2.9 42 13-54 14-55 (222)
87 PF10855 DUF2648: Protein of u 49.3 25 0.00054 19.8 2.6 19 37-55 6-24 (33)
88 PF11044 TMEMspv1-c74-12: Plec 48.9 46 0.001 20.2 3.9 31 14-54 3-33 (49)
89 PF05961 Chordopox_A13L: Chord 48.6 18 0.00038 23.4 2.2 20 33-52 6-25 (68)
90 COG4736 CcoQ Cbb3-type cytochr 48.2 10 0.00022 23.8 1.0 16 37-52 18-33 (60)
91 PF05915 DUF872: Eukaryotic pr 48.2 28 0.00061 24.0 3.4 13 34-46 52-64 (115)
92 COG1030 NfeD Membrane-bound se 48.1 25 0.00055 29.6 3.7 31 17-47 265-295 (436)
93 COG3238 Uncharacterized protei 47.8 41 0.0009 24.4 4.3 24 27-50 124-147 (150)
94 PF15168 TRIQK: Triple QxxK/R 46.7 32 0.00069 22.9 3.2 19 5-24 42-60 (79)
95 PF12273 RCR: Chitin synthesis 45.0 36 0.00079 23.1 3.5 21 34-54 9-29 (130)
96 PF15099 PIRT: Phosphoinositid 44.5 12 0.00026 26.9 1.1 26 25-50 73-98 (129)
97 PHA03049 IMV membrane protein; 42.9 37 0.00081 21.9 3.1 20 33-52 6-25 (68)
98 PF11808 DUF3329: Domain of un 42.9 91 0.002 20.1 5.4 12 44-55 43-54 (90)
99 COG0811 TolQ Biopolymer transp 42.2 50 0.0011 24.5 4.2 19 34-52 171-189 (216)
100 PF06084 Cytomega_TRL10: Cytom 42.2 18 0.00039 26.2 1.7 25 64-88 122-148 (150)
101 KOG3415 Putative Rab5-interact 41.9 90 0.002 22.4 5.2 52 4-55 40-92 (129)
102 PRK12437 prolipoprotein diacyl 41.5 23 0.0005 27.2 2.3 21 29-49 235-255 (269)
103 PF09163 Form-deh_trans: Forma 40.9 38 0.00083 20.0 2.7 28 20-47 3-30 (44)
104 PRK15015 carbon starvation pro 40.8 62 0.0013 29.0 5.0 56 26-81 29-84 (701)
105 PF14880 COX14: Cytochrome oxi 40.1 42 0.0009 20.3 2.9 27 28-54 15-41 (59)
106 PF10710 DUF2512: Protein of u 39.7 1.3E+02 0.0029 21.2 6.1 53 4-56 55-112 (136)
107 cd01324 cbb3_Oxidase_CcoQ Cyto 39.0 22 0.00047 21.0 1.5 20 36-55 18-37 (48)
108 PF08172 CASP_C: CASP C termin 38.9 78 0.0017 24.4 4.9 41 13-53 201-241 (248)
109 PF10883 DUF2681: Protein of u 38.8 51 0.0011 22.0 3.4 20 35-54 8-27 (87)
110 PF08566 Pam17: Mitochondrial 38.8 81 0.0017 23.6 4.7 44 4-47 39-92 (173)
111 KOG4510 Permease of the drug/m 38.4 25 0.00055 28.7 2.2 40 15-54 291-330 (346)
112 PF00873 ACR_tran: AcrB/AcrD/A 37.8 78 0.0017 28.3 5.2 43 13-55 898-945 (1021)
113 TIGR02796 tolQ TolQ protein. T 37.6 70 0.0015 23.7 4.3 20 34-53 175-194 (215)
114 COG3296 Uncharacterized protei 37.5 56 0.0012 23.8 3.6 32 14-45 76-107 (143)
115 KOG2922 Uncharacterized conser 37.2 12 0.00025 30.7 0.1 41 12-52 99-139 (335)
116 TIGR02797 exbB tonB-system ene 36.9 72 0.0016 23.6 4.3 20 34-53 171-190 (211)
117 KOG1278 Endosomal membrane pro 35.9 29 0.00063 30.6 2.3 24 29-52 267-290 (628)
118 KOG4314 Predicted carbohydrate 35.5 18 0.00038 28.7 0.9 37 14-50 90-126 (290)
119 PRK09757 PTS system N-acetylga 35.3 76 0.0016 24.8 4.3 9 81-89 258-266 (267)
120 PRK10801 colicin uptake protei 34.9 79 0.0017 23.8 4.3 20 34-53 176-195 (227)
121 PF14283 DUF4366: Domain of un 34.2 12 0.00026 28.5 -0.2 19 40-58 170-188 (218)
122 PRK13499 rhamnose-proton sympo 33.8 69 0.0015 26.0 4.0 35 15-49 112-153 (345)
123 PF11023 DUF2614: Protein of u 33.3 74 0.0016 22.4 3.6 43 11-53 19-63 (114)
124 COG4589 Predicted CDP-diglycer 32.6 85 0.0019 25.4 4.3 42 5-46 209-254 (303)
125 PF07214 DUF1418: Protein of u 32.4 87 0.0019 21.4 3.7 33 15-47 19-56 (96)
126 PRK12587 putative monovalent c 32.1 1.2E+02 0.0026 21.1 4.5 33 17-49 23-61 (118)
127 PF13273 DUF4064: Protein of u 31.1 1.1E+02 0.0024 19.5 4.0 32 11-46 66-97 (100)
128 KOG1580 UDP-galactose transpor 30.7 18 0.00039 29.2 0.2 36 13-48 121-156 (337)
129 PF02554 CstA: Carbon starvati 30.6 89 0.0019 26.0 4.2 46 36-81 8-53 (376)
130 TIGR00966 3a0501s07 protein-ex 30.4 1.1E+02 0.0024 23.0 4.4 37 8-45 128-164 (246)
131 PRK13871 conjugal transfer pro 30.4 1.2E+02 0.0027 21.9 4.4 37 8-44 52-90 (135)
132 PRK10414 biopolymer transport 30.0 1E+02 0.0023 23.6 4.3 19 34-52 182-200 (244)
133 KOG3269 Predicted membrane pro 29.0 1.1E+02 0.0025 23.0 4.2 25 18-42 38-62 (180)
134 KOG1479 Nucleoside transporter 28.9 2.6E+02 0.0057 23.3 6.7 51 6-56 157-215 (406)
135 PF10661 EssA: WXG100 protein 28.8 61 0.0013 23.1 2.6 18 34-51 125-142 (145)
136 COG0670 Integral membrane prot 28.8 1.7E+02 0.0037 22.3 5.2 46 9-54 151-196 (233)
137 PF15361 RIC3: Resistance to i 28.6 86 0.0019 22.5 3.4 19 41-59 90-108 (152)
138 PF12158 DUF3592: Protein of u 28.5 63 0.0014 21.2 2.5 16 34-49 13-28 (148)
139 PRK12585 putative monovalent c 28.0 78 0.0017 24.2 3.2 32 17-48 22-59 (197)
140 PHA03231 glycoprotein BALF4; P 27.5 1.5E+02 0.0034 27.1 5.4 39 7-47 684-722 (829)
141 PRK09697 protein secretion pro 27.3 47 0.001 23.9 1.8 21 25-47 20-40 (139)
142 PRK10503 multidrug efflux syst 27.2 84 0.0018 28.6 3.8 35 10-45 897-931 (1040)
143 PRK15049 L-asparagine permease 26.9 2.6E+02 0.0057 22.8 6.3 17 32-48 447-463 (499)
144 KOG2443 Uncharacterized conser 26.5 1.1E+02 0.0023 25.5 4.0 34 18-52 162-197 (362)
145 PRK11357 frlA putative fructos 25.5 1.2E+02 0.0027 23.9 4.1 21 35-55 419-439 (445)
146 PF05399 EVI2A: Ectropic viral 25.1 2E+02 0.0043 22.5 5.0 31 15-54 132-162 (227)
147 PF06965 Na_H_antiport_1: Na+/ 24.5 1.5E+02 0.0032 24.6 4.5 44 10-53 156-199 (378)
148 PF11694 DUF3290: Protein of u 24.3 2.7E+02 0.0059 19.9 5.6 48 9-56 22-72 (149)
149 PF10529 Hist_rich_Ca-bd: Hist 24.0 36 0.00077 16.1 0.5 7 82-88 8-14 (15)
150 PRK13108 prolipoprotein diacyl 23.8 98 0.0021 26.1 3.4 24 29-52 254-277 (460)
151 PRK13021 secF preprotein trans 23.5 1.7E+02 0.0036 23.2 4.4 39 7-46 155-193 (297)
152 COG4827 Predicted transporter 23.5 1.3E+02 0.0029 23.6 3.8 26 30-55 175-200 (239)
153 PF04156 IncA: IncA protein; 23.3 1.4E+02 0.003 21.0 3.7 17 35-51 48-64 (191)
154 COG3004 NhaA Na+/H+ antiporter 23.1 1.1E+02 0.0025 25.5 3.5 45 10-54 163-207 (390)
155 PRK12675 putative monovalent c 22.8 1.2E+02 0.0027 20.5 3.2 34 16-49 15-54 (104)
156 PRK12586 putative monovalent c 22.5 1.1E+02 0.0024 22.1 3.0 30 19-48 27-62 (145)
157 PF02480 Herpes_gE: Alphaherpe 22.4 29 0.00063 28.9 0.0 9 72-80 391-399 (439)
158 PF13858 DUF4199: Protein of u 22.3 2.6E+02 0.0056 18.9 5.5 40 5-44 2-45 (163)
159 cd08764 Cyt_b561_CG1275_like N 22.3 1.1E+02 0.0024 23.2 3.1 18 32-49 176-193 (214)
160 PRK09579 multidrug efflux prot 22.3 1.6E+02 0.0034 26.8 4.5 34 14-48 881-914 (1017)
161 PF06975 DUF1299: Protein of u 22.2 41 0.00089 20.2 0.6 12 73-84 9-21 (47)
162 COG4327 Predicted membrane pro 22.1 1.2E+02 0.0027 20.9 3.0 28 10-37 23-50 (101)
163 PF01102 Glycophorin_A: Glycop 21.8 1.2E+02 0.0027 21.2 3.1 7 36-42 76-82 (122)
164 PF11446 DUF2897: Protein of u 21.5 1E+02 0.0022 18.8 2.3 20 36-55 7-28 (55)
165 COG3374 Predicted membrane pro 21.5 50 0.0011 25.3 1.1 26 25-53 75-100 (197)
166 PF04549 CD47: CD47 transmembr 21.5 73 0.0016 23.4 1.9 39 7-45 37-75 (157)
167 PF04304 DUF454: Protein of un 21.5 1.5E+02 0.0033 17.8 3.1 23 12-34 34-56 (71)
168 PF03125 Sre: C. elegans Sre G 21.3 2.2E+02 0.0047 22.4 4.7 40 10-49 171-212 (365)
169 PRK01637 hypothetical protein; 21.3 3.7E+02 0.0081 20.4 6.1 25 31-55 248-272 (286)
170 PF15038 Jiraiya: Jiraiya 21.0 2.6E+02 0.0056 20.9 4.8 22 35-57 146-167 (175)
171 TIGR03745 conj_TIGR03745 integ 21.0 1.1E+02 0.0024 21.2 2.6 27 34-60 45-74 (104)
172 PRK12554 undecaprenyl pyrophos 21.0 1.2E+02 0.0027 23.6 3.3 40 11-51 92-135 (276)
173 PRK09577 multidrug efflux prot 21.0 1.2E+02 0.0026 27.5 3.6 33 15-48 903-935 (1032)
174 PF01618 MotA_ExbB: MotA/TolQ/ 20.9 2.8E+02 0.006 18.7 5.9 22 34-55 107-128 (139)
175 COG1742 Uncharacterized conser 20.8 88 0.0019 21.9 2.1 31 17-47 72-102 (109)
176 PF01024 Colicin: Colicin pore 20.8 1.5E+02 0.0033 22.3 3.6 18 30-47 157-174 (187)
177 PF06168 DUF981: Protein of un 20.7 63 0.0014 24.3 1.5 13 35-47 107-119 (191)
178 PRK13661 hypothetical protein; 20.5 3.4E+02 0.0074 20.0 5.3 44 16-59 127-178 (182)
No 1
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.87 E-value=1.9e-09 Score=72.62 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
+|+|.+|+++++++|+++|||++|+.+++|++++++|+++|+|
T Consensus 111 ~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 111 SVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 6899999999999999999999999999999999999999975
No 2
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.74 E-value=1.3e-08 Score=81.72 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 6 KDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 6 ~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
-+|+||+||++|+++|+.+-+|.++.+|++|+++|+.|+.+|
T Consensus 272 lSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 272 LSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999999
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.63 E-value=2e-09 Score=85.05 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~ 55 (90)
+|+|.+|.+++++.|+++|++|+|+.|.+|++++++|+++|++.|.+++
T Consensus 265 ~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 265 SVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred hhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 7999999999999999999999999999999999999999999998654
No 4
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.44 E-value=2.3e-07 Score=72.35 Aligned_cols=45 Identities=20% Similarity=0.387 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
++++.+|.++++++|+++|||++|+.+++|.+++++|+.+|++.|
T Consensus 306 sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 306 AVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 789999999999999999999999999999999999999998764
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.37 E-value=1.7e-07 Score=70.35 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
++.|.+|.++++++|+++|||++|+.+++|.+++++|+.+|++.|.+
T Consensus 251 sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 251 SVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 67899999999999999999999999999999999999999987754
No 6
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.98 E-value=1e-05 Score=55.77 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
++.+.|.++|+++|+|++++.+++|++++++||+..|..
T Consensus 66 iG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 66 IGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 577899999999999999999999999999999999764
No 7
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.97 E-value=1.4e-05 Score=54.68 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
+.-+.+.++|+++|+|++|+.+++|++++++||++.|...
T Consensus 66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667889999999999999999999999999999997543
No 8
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.95 E-value=1e-05 Score=56.26 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=39.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 5 YKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 5 ~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
|---+|+ .-+.+.++|+++|||++|+.+++|++++++||++.|...
T Consensus 60 Yavw~Gi-G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 60 YALWEGI-GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4334455 788899999999999999999999999999999996544
No 9
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.91 E-value=1.7e-05 Score=53.93 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
++.+.+.++|+++|||++|+.+++|++++++||+..|..
T Consensus 65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 567889999999999999999999999999999998653
No 10
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.88 E-value=1.8e-05 Score=59.99 Aligned_cols=48 Identities=19% Similarity=0.415 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
++.+..+-.+++++|+++|++++++.+++|+++++.|+.+|++.|.++
T Consensus 255 t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 255 TIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 567788999999999999999999999999999999999999998753
No 11
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.87 E-value=2.2e-05 Score=53.84 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
++.+.+.++|+++|||++|+.+++|+++++.||++.|.
T Consensus 71 iG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lkl 108 (109)
T PRK10650 71 FGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIKL 108 (109)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 56788999999999999999999999999999999864
No 12
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.79 E-value=3.6e-05 Score=52.05 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
..-+.+.++|+++|||++|+.+++|++++++||++..
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999864
No 13
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.46 E-value=0.00021 Score=47.21 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
-+++.++|.++|+|++++.+++|.+++++||++.++...
T Consensus 71 pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 71 PIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 456888999999999999999999999999999987665
No 14
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.35 E-value=0.00037 Score=48.58 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=28.4
Q ss_pred HHHHHHH--HHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 16 VNVQVAV--FYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 16 ltIiisv--~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
++.++++ ++|||++|+.+++|++++++||++.+.
T Consensus 87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 3444444 489999999999999999999999875
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.27 E-value=0.00073 Score=42.68 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 9 QRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 9 aGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
....--++++++++++++|++++.+++|+++++.|+++.+
T Consensus 86 ~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 86 LQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3445668899999999999999999999999999999875
No 16
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.09 E-value=0.0012 Score=52.40 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
+--+.++++|++++||++++..++|.+++++|+.+.++.|-.+
T Consensus 291 L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 291 LSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4457789999999999999999999999999999998765433
No 17
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0011 Score=53.11 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcC-ccchhhhhHHHHHHhHHHHHHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHD-EFTWLRGFGLFTILVGVSLFNWYKYQKLQ 56 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd-~lT~ln~vGl~iii~GVvlyN~~K~~~~~ 56 (90)
++.| .|..++..++.+.|+| ++++.|++|+.+.++|=++|++.++++++
T Consensus 258 tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 258 TIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred eehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 4678 8999999888888887 79999999999999999999999987653
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.77 E-value=0.00083 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.399 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
-++++++|++++||++|..+++|.+++.+|+++..
T Consensus 104 vvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 104 VVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 47899999999999999999999999999998763
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.76 E-value=0.0035 Score=47.29 Aligned_cols=44 Identities=7% Similarity=0.033 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 8 SQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 8 VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
+..-.--+..+++|+++|||++++.+++|.+++++|++++.+..
T Consensus 240 ~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 240 TLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 33445567899999999999999999999999999999997554
No 20
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.76 E-value=0.0013 Score=47.56 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=39.2
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 5 YKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 5 ~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
.|+++.-..-++++++|+++||+++|+.+++|..++++|+.+|
T Consensus 180 ~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 180 TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 4677888888999999999999999999999999999998765
No 21
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.61 E-value=0.0038 Score=46.96 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
-+--+..+++|++++||++|+..++|.++++.|+++.++.+.
T Consensus 247 ~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 247 YVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 445577889999999999999999999999999999877554
No 22
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.41 E-value=0.0043 Score=46.30 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL 46 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvl 46 (90)
=++.+++|+++|||++|+..++|++++++|+++
T Consensus 248 pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 248 IVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 377889999999999999999999999999986
No 23
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.27 E-value=0.006 Score=39.85 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=20.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHH
Q 048265 5 YKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTI 40 (90)
Q Consensus 5 ~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~ii 40 (90)
|---+|+ ..+.+.++|+++|||++|+.+++|++++
T Consensus 59 Yavw~g~-g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 59 YAVWTGL-GIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH-HHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3333444 6688999999999999999999999875
No 24
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.20 E-value=0.021 Score=43.13 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 9 QRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 9 aGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
..-+.-++.+++|+++|||++|+.+++|++++++|+.++...-.
T Consensus 245 ~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 245 FQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999999999888876554
No 25
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.17 E-value=0.0033 Score=50.14 Aligned_cols=39 Identities=21% Similarity=0.603 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
+...+++++++||.+++|+-++|++++++|+++||....
T Consensus 270 d~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 270 DFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred hHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 456789999999999999999999999999999987553
No 26
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.16 E-value=0.0088 Score=45.13 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
.+--++.+++|++++||++|+..++|.++++.|+++...
T Consensus 249 ~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 249 YFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 344578899999999999999999999999999987744
No 27
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.15 E-value=0.0083 Score=44.78 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
.-+++.++|+++|||++++.+++|++++++|+++...
T Consensus 99 ~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 99 SPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999999999998754
No 28
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.12 E-value=0.0084 Score=43.87 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
--+.+.++|.++|+|++++.+++|+++.++||++..
T Consensus 106 ~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 106 NPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999998764
No 29
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=95.95 E-value=0.01 Score=42.76 Aligned_cols=36 Identities=11% Similarity=-0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
-+++.++|.++++|++++.+++|++++++|+++...
T Consensus 84 P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 84 PLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 468899999999999999999999999999999753
No 30
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.94 E-value=0.012 Score=44.52 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
--+++.++|+++++|++++.+++|+++.++||++.-
T Consensus 109 ~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 109 NPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999864
No 31
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.89 E-value=0.013 Score=44.28 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
-=++.+++|++++||++++..++|.+++++|+.+-.+.+
T Consensus 251 ~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 251 VPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 346788999999999999999999999999998776544
No 32
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=95.83 E-value=0.016 Score=41.80 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVS 45 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVv 45 (90)
++.....-++++++|+++|||++++.+++|.+++++|+.
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 445566678899999999999999999999999999973
No 33
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.43 E-value=0.016 Score=44.22 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhh----hHHHHHHhHHHHHHHHH
Q 048265 8 SQRILLQYVNVQVAVFYFHDEFTWLRG----FGLFTILVGVSLFNWYK 51 (90)
Q Consensus 8 VaGI~KeiltIiisv~iFgd~lT~ln~----vGl~iii~GVvlyN~~K 51 (90)
+...+--+..+++|+++|||+.++.++ +|.++++.|+++....|
T Consensus 243 ~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~~ 290 (290)
T TIGR00776 243 SLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIGK 290 (290)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhccC
Confidence 344455678889999999999999999 99999999999876543
No 34
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=95.27 E-value=0.038 Score=41.44 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=34.5
Q ss_pred hhHHHH---HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 8 SQRILL---QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 8 VaGI~K---eiltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
.++++| -+++++++.++++|++++.+++|++++++|+++.
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 345555 5778999999999999999999999999999864
No 35
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=95.20 E-value=0.019 Score=43.42 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 8 SQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 8 VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
+....|-+.|.++++++++.++++.+|+++++.++|+++......
T Consensus 48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 556789999999999999999999999999999999999866554
No 36
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.18 E-value=0.054 Score=38.56 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
...-+..+++++++|+|++++..++|.+++++|+++.+..
T Consensus 249 ~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 249 LLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4455566667999999999999999999999999999766
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.14 E-value=0.026 Score=42.59 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
=+++++++.++++|++++.+++|+++.++|+++.-.
T Consensus 102 Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 102 PSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 466778999999999999999999999999988753
No 38
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.07 E-value=0.033 Score=42.02 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
+++.+++.++++|+++..+++|+++.++|+++...
T Consensus 98 i~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 98 FFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 57888999999999999999999999999998753
No 39
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.07 E-value=0.014 Score=46.59 Aligned_cols=38 Identities=13% Similarity=0.392 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
..++++|++++++++++.+++|.++|++|+++......
T Consensus 117 ~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 117 PFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 56889999999999999999999999999998866654
No 40
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=94.74 E-value=0.042 Score=43.00 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
+++++++.++++|++++.+++|++++++||.+..
T Consensus 152 vft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 152 VFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 5688999999999999999999999999999764
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=94.59 E-value=0.051 Score=43.22 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=32.6
Q ss_pred HHHHHHHHHHH------hcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 14 QYVNVQVAVFY------FHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 14 eiltIiisv~i------Fgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
-+.+.++++++ |+|++++.+++|++++++|+++.-.++
T Consensus 115 P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 115 PALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 46788889888 799999999999999999999875433
No 42
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.85 E-value=0.057 Score=43.66 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
.+.+..|++|.++||.++++.+++|..+.+.|+.+=.+-|..
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 467889999999999999999999999999999988887775
No 43
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=93.63 E-value=0.052 Score=41.17 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
.|-+.+++++++++|.+.++.++++.+++.+|++++...+..
T Consensus 99 ~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 99 SKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred hHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 467788999999999999999999999999999999887754
No 44
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=93.54 E-value=0.23 Score=39.71 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~ 55 (90)
+.-.+..++|+++|||+++..+++.++.+-+|+++|-...+.+.
T Consensus 246 i~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~ 289 (293)
T COG2962 246 IEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTA 289 (293)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999998887644
No 45
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=93.45 E-value=0.12 Score=38.86 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
-+++.++|.+ |||++++..++|+++.++|+++.+.
T Consensus 107 Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 107 PLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 3566777865 8999999999999999999998854
No 46
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.15 Score=40.85 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
+-..||++|+++|+.+++..+|+|-++++.+..+=..
T Consensus 277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhh
Confidence 3467999999999999999999999999998765433
No 47
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=93.15 E-value=0.048 Score=44.08 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
-++|+++|+.+.+||+|..+.+|..+.+.||++..+.-+
T Consensus 134 Pvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 134 PVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 478999999999999999999999999999999876543
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=92.35 E-value=0.2 Score=35.61 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=32.0
Q ss_pred HHHHHHHHH-HHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 14 QYVNVQVAV-FYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 14 eiltIiisv-~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
-+.+.+++. ++++|++++.+++|+++.++|+++.....-
T Consensus 107 p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 107 PLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 356677785 666999999999999999999999866443
No 49
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.32 E-value=0.11 Score=36.06 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL 46 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvl 46 (90)
=+.|++.+.++.++..++..++|++++++||.+
T Consensus 79 fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 79 FVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 367888998888888899999999999999975
No 50
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=91.32 E-value=0.15 Score=38.88 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCccchhh----hhHHHHHHhHHHHHHHHH
Q 048265 16 VNVQVAVFYFHDEFTWLR----GFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 16 ltIiisv~iFgd~lT~ln----~vGl~iii~GVvlyN~~K 51 (90)
...++|.++|||+.|..+ ++|++++++|+++....+
T Consensus 99 ~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 99 GGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 556789999999999999 999999999999985543
No 51
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=91.23 E-value=0.84 Score=31.51 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
-|-+.-+++|.+.++. -....++|..++++|++..-..-.
T Consensus 69 GRGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l~~~ 108 (136)
T PF08507_consen 69 GRGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYIILGFF 108 (136)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788899999998 223467789999999887755443
No 52
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=90.57 E-value=0.38 Score=35.34 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=23.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHH-HhcccCCCCCCCCCCCCCCcceEeccccccccCCC
Q 048265 35 FGLFTILVGVSLFNWYKYQKL-QAGHANEDGMLGSPEANASAKYVILEEIDDLDEGT 90 (90)
Q Consensus 35 vGl~iii~GVvlyN~~K~~~~-~~~~~~~~~~~~s~~~~~~~~y~~~~~~~d~~~~~ 90 (90)
+|+..+++--+++..+|..+. ++.+.| ++++.+ +..-+-.+|+|+|||||.|
T Consensus 102 ~g~s~l~i~yfvir~~R~r~~~rktRkY--gvl~~~--~~~~Em~pL~~ddedeD~T 154 (163)
T PF06679_consen 102 VGLSALAILYFVIRTFRLRRRNRKTRKY--GVLTTR--AENVEMAPLEEDDEDEDST 154 (163)
T ss_pred HHHHHHHHHHHHHHHHhhccccccceee--cccCCC--cccceecccCCCccccccc
Confidence 344444444445555555431 122233 333333 2334566775555555543
No 53
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=90.15 E-value=0.41 Score=33.37 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=31.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265 4 QYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL 46 (90)
Q Consensus 4 ~~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvl 46 (90)
|-|-+.=++-=.+-+.+|+++++|+++|..+.|.++++.+|..
T Consensus 63 QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 63 QLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 3443433444444567899999999999999999998887653
No 54
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=89.39 E-value=0.099 Score=43.47 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
..|+++|+.+=+|+||+.++++.++.++||++++.++-.
T Consensus 197 ~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 197 FFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 468888988889999999999999999999999888753
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=89.26 E-value=0.5 Score=37.79 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
.+.+++|.++|+|++++.+++-.++..+||..-
T Consensus 110 L~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 110 LVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999754
No 56
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=88.00 E-value=0.62 Score=38.11 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
.+.-.+++..+-+++...+.|.+..++++|+++.+.|+++||-.
T Consensus 292 mllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 292 MLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred HHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888899999999999999999999999999999963
No 57
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.98 E-value=1.6 Score=30.70 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=32.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 4 QYKDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 4 ~~~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
|.|-..-++--++-..+|+++.+||+.|-.+.|.++++.||.+.
T Consensus 70 QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 70 QLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 44444444444455567999999999999999999888887654
No 58
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=86.65 E-value=1 Score=36.68 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
+--+++.++|+.+|+-++|...++|..+++..+.+|+.+++.
T Consensus 285 ~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 285 VAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 345778889999999999999999999999999999966664
No 59
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=83.67 E-value=3.1 Score=34.02 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
.|....|=.-|.++++++.+.++++++|.-+++.++||++..
T Consensus 122 qVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 122 QVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999999999999986
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=81.48 E-value=1.6 Score=34.14 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 10 RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 10 GI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
|-+.=+...++|.++.||+++...++|.+++++|+++.-.+.
T Consensus 83 g~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 83 GALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 344456778899999999999999999999999998775443
No 61
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=81.08 E-value=2 Score=35.09 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
.+-++||++|.++|-.|||..-.-|..+++.||.+=-+.|
T Consensus 295 aRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 295 ARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3567999999999999999999999999999998765555
No 62
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.67 E-value=1.2 Score=36.34 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHHHhc
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAG 58 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~~~~ 58 (90)
+|+|-.|-+.=-++++++++|..+.+-|-|-.+++.|-.+|.+-|-++.+..
T Consensus 285 nISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 285 NISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred eecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999887665443
No 63
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=77.97 E-value=3.3 Score=33.22 Aligned_cols=33 Identities=3% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
++-.+.|+++.||.+|+.+++|++.++.+.+.-
T Consensus 248 a~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 248 ALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999999999988743
No 64
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=73.24 E-value=8.1 Score=30.94 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265 8 SQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 8 VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~~ 55 (90)
.-|-.-.....+.|.++|++|.+...++.+.+=+..-+.|.+.|-++.
T Consensus 255 MvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 255 MVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred HHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667788999999999999999988887777778877775433
No 65
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=72.93 E-value=2 Score=33.35 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=22.0
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 29 FTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 29 lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
-.++|.+|++++++|.++|-.-|...
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCC
Confidence 45789999999999999998877643
No 66
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=71.99 E-value=3.4 Score=33.59 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
+--+-.++|+..|..++|+.-++|-++++.|-++|.-..
T Consensus 278 RKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 278 RKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999986544
No 67
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=71.42 E-value=0.8 Score=37.04 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
.....++.++++++.+-+--++++.|.++|+.||+.......
T Consensus 112 cwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 112 CWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred HhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 356788999999999999999999999999999998877665
No 68
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=70.86 E-value=4 Score=33.50 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
+.+-++|+.+.+.+++..+|+|+..+++|++.+-+..
T Consensus 124 IFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d 160 (372)
T KOG3912|consen 124 IFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLD 160 (372)
T ss_pred hhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeee
Confidence 4567788999999999999999999999999876553
No 69
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=70.04 E-value=4.5 Score=31.57 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcC--ccch----hhhhHHHHHHhHHHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHD--EFTW----LRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 13 KeiltIiisv~iFgd--~lT~----ln~vGl~iii~GVvlyN~~K 51 (90)
=+..+++-|..+|+| .+++ ....|+.++++||.+.+..|
T Consensus 250 ~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 250 FTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 356788899999997 4666 45678899999999986655
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=66.75 E-value=6.1 Score=31.03 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCccchh----hhhHHHHHHhHHHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWL----RGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 15 iltIiisv~iFgd~lT~l----n~vGl~iii~GVvlyN~~K 51 (90)
+.+.++++++|||-=+.. -+++++++++|+++-.+.+
T Consensus 84 vg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~ 124 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD 124 (269)
T ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 568899999999954432 3457888999998775544
No 71
>PF13755 Sensor_TM1: Sensor N-terminal transmembrane domain
Probab=63.77 E-value=7.4 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHhHHHHHHHHH
Q 048265 31 WLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 31 ~ln~vGl~iii~GVvlyN~~K 51 (90)
..|++++++.++|+.+.|-++
T Consensus 20 ~~Nl~aL~vLv~G~LyLn~~R 40 (79)
T PF13755_consen 20 AFNLLALAVLVGGILYLNQYR 40 (79)
T ss_pred HHHHHHHHHHHHHHHhhhHHH
Confidence 469999999999999999887
No 72
>PRK10746 putative transport protein YifK; Provisional
Probab=60.99 E-value=17 Score=29.26 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.9
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHhcccC
Q 048265 32 LRGFGLFTILVGVSLFNWYKYQKLQAGHAN 61 (90)
Q Consensus 32 ln~vGl~iii~GVvlyN~~K~~~~~~~~~~ 61 (90)
-.+.|+.+++.+++.|-.+|+.++++-|+.
T Consensus 430 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 459 (461)
T PRK10746 430 SLFVGIIFLLAVTLIYKVFGLNRHGKAHKL 459 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhc
Confidence 567799999999999988888766554443
No 73
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=60.75 E-value=18 Score=20.88 Aligned_cols=17 Identities=12% Similarity=0.598 Sum_probs=11.6
Q ss_pred HHHHHhHHHHHHHHHHH
Q 048265 37 LFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 37 l~iii~GVvlyN~~K~~ 53 (90)
++++++|++++.+.+-+
T Consensus 18 ~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 45667788888775543
No 74
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=60.74 E-value=8.7 Score=29.01 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCccchhhhhHHHH
Q 048265 6 KDSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFT 39 (90)
Q Consensus 6 ~~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~i 39 (90)
|..+--+--+++.++|+++|+.++|+..++|.++
T Consensus 210 K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 210 KGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 3444455567899999999999999999988764
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=59.99 E-value=26 Score=24.78 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=13.2
Q ss_pred hhhhHHHHHHhHHHHHHHHHH
Q 048265 32 LRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 32 ln~vGl~iii~GVvlyN~~K~ 52 (90)
..++|++++..|++++...-+
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~ 58 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLL 58 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666767667777665443
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=55.84 E-value=15 Score=25.59 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=18.0
Q ss_pred CccchhhhhHHHHHHhHHHH
Q 048265 27 DEFTWLRGFGLFTILVGVSL 46 (90)
Q Consensus 27 d~lT~ln~vGl~iii~GVvl 46 (90)
.++++.+++|++++++|+++
T Consensus 119 ~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 119 RPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 57999999999999999974
No 77
>PRK02237 hypothetical protein; Provisional
Probab=55.01 E-value=21 Score=24.90 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 16 VNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 16 ltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
+-++++.++.|.+.+..-++|-++|++|+...
T Consensus 72 ~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 72 GSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 34467788888889999999999999999765
No 78
>PRK13664 hypothetical protein; Provisional
Probab=54.57 E-value=24 Score=22.41 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhcc--cCCCCCCCCCCCC
Q 048265 37 LFTILVGVSLFNWYKYQKLQAGH--ANEDGMLGSPEAN 72 (90)
Q Consensus 37 l~iii~GVvlyN~~K~~~~~~~~--~~~~~~~~s~~~~ 72 (90)
+.++++||++=..-...+..+.+ .+....|+-|-+|
T Consensus 12 ill~lvG~i~N~iK~l~RvD~Kkfl~nkp~LPPHRD~N 49 (62)
T PRK13664 12 VLVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFN 49 (62)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCCCcccc
Confidence 45667777654443444433332 3344555555444
No 79
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=53.96 E-value=8.6 Score=31.25 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=24.1
Q ss_pred HHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 23 FYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 23 ~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
..||=++.|+-.+-++.++.|.++|.
T Consensus 273 ~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 273 RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 77888999999999999999999993
No 80
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=53.65 E-value=16 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.5
Q ss_pred ccchhhhhHHHHHHhHHHHHHHHH
Q 048265 28 EFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 28 ~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
.++|.+++|++++++|+.+|...+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~ 27 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRF 27 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999996544
No 81
>PRK02935 hypothetical protein; Provisional
Probab=53.42 E-value=33 Score=24.04 Aligned_cols=42 Identities=10% Similarity=0.500 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhcCc---cchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDE---FTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~---lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
++--+++..+| ++|+++ ++...++|++.++++.++|-|.-.-
T Consensus 20 vfiG~~vMy~G-iff~~~~~~m~ifm~~G~l~~l~S~vvYFwiGml 64 (110)
T PRK02935 20 VFIGFIVMYLG-IFFRESIIIMTIFMLLGFLAVIASTVVYFWIGML 64 (110)
T ss_pred HHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445666677 556664 5567889999999999999886653
No 82
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=53.38 E-value=3.5 Score=25.71 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=13.2
Q ss_pred hhhHHHHHHhHHHHHHH
Q 048265 33 RGFGLFTILVGVSLFNW 49 (90)
Q Consensus 33 n~vGl~iii~GVvlyN~ 49 (90)
+++|+++++.|+++.-+
T Consensus 1 kiigi~Llv~GivLl~~ 17 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYF 17 (59)
T ss_pred CeeeehHHHHHHHHHHh
Confidence 36789999999887743
No 83
>PF13994 PgaD: PgaD-like protein
Probab=52.76 E-value=19 Score=24.97 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=19.4
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHHHHHHh
Q 048265 29 FTWLRGFGLFTILVGVSLFNWYKYQKLQA 57 (90)
Q Consensus 29 lT~ln~vGl~iii~GVvlyN~~K~~~~~~ 57 (90)
+..+..-.+++++.++++.-+.+|++.+-
T Consensus 61 ~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf 89 (138)
T PF13994_consen 61 LNTLQIYLLIALVNAVILILWAKYNRLRF 89 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556677777888888888876543
No 84
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=51.24 E-value=28 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=17.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhcc--cCCCCCCCCCCCC
Q 048265 37 LFTILVGVSLFNWYKYQKLQAGH--ANEDGMLGSPEAN 72 (90)
Q Consensus 37 l~iii~GVvlyN~~K~~~~~~~~--~~~~~~~~s~~~~ 72 (90)
+.++++|+++=..-.+.+..+.+ .+....|+-|-+|
T Consensus 11 iLl~lvG~i~n~iK~L~RvD~K~fL~nKP~lPPHRDnN 48 (63)
T PF13980_consen 11 ILLILVGMIINGIKELRRVDHKKFLDNKPELPPHRDNN 48 (63)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCCCCccc
Confidence 56677777654444444433322 3334454444443
No 85
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=50.69 E-value=22 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
++-++++.++-|.+.+..-++|-++|++|+...
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 455677778888888889999999999999865
No 86
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=49.57 E-value=20 Score=25.71 Aligned_cols=42 Identities=10% Similarity=-0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
|-+.+++.+..+++.+.+..+++..+++..|++...+.+.+.
T Consensus 14 ~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~ 55 (222)
T TIGR00803 14 NLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQW 55 (222)
T ss_pred chHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHH
Confidence 446677888889999999999999999999999887776543
No 87
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=49.26 E-value=25 Score=19.83 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=15.3
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 048265 37 LFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 37 l~iii~GVvlyN~~K~~~~ 55 (90)
+.+++.|..++.+-||++.
T Consensus 6 i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNH 24 (33)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 4578889999999999854
No 88
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=48.94 E-value=46 Score=20.15 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
.|||.++|+++. +|+ ++-.|...|...|.-+
T Consensus 3 ~wlt~iFsvvIi---------l~I-f~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 3 TWLTTIFSVVII---------LGI-FAWIGLSIYQKIKQIR 33 (49)
T ss_pred hHHHHHHHHHHH---------HHH-HHHHHHHHHHHHHHHH
Confidence 467777776642 232 2335666666555443
No 89
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=48.64 E-value=18 Score=23.43 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.1
Q ss_pred hhhHHHHHHhHHHHHHHHHH
Q 048265 33 RGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 33 n~vGl~iii~GVvlyN~~K~ 52 (90)
-++|+.+++.|.++|..++-
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 36788999999999977764
No 90
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=48.16 E-value=10 Score=23.82 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=11.1
Q ss_pred HHHHHhHHHHHHHHHH
Q 048265 37 LFTILVGVSLFNWYKY 52 (90)
Q Consensus 37 l~iii~GVvlyN~~K~ 52 (90)
+.+++.||+++.+.+-
T Consensus 18 ~~l~fiavi~~ayr~~ 33 (60)
T COG4736 18 FTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHhccc
Confidence 4567778888866554
No 91
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=48.15 E-value=28 Score=24.00 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=6.3
Q ss_pred hhHHHHHHhHHHH
Q 048265 34 GFGLFTILVGVSL 46 (90)
Q Consensus 34 ~vGl~iii~GVvl 46 (90)
++|.+++++|.++
T Consensus 52 i~G~~li~~g~l~ 64 (115)
T PF05915_consen 52 IFGTVLIIIGLLL 64 (115)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 92
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=48.07 E-value=25 Score=29.65 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 17 NVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 17 tIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
++.+-..++|-.+-+.|+.|++++++|++++
T Consensus 265 ~i~LlL~f~g~~~~~~~~~gllLiilG~iLi 295 (436)
T COG1030 265 AILLLLGFYGLLFLGINWAGLLLIILGAILI 295 (436)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 4444455666666677777888888887776
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.77 E-value=41 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=19.9
Q ss_pred CccchhhhhHHHHHHhHHHHHHHH
Q 048265 27 DEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 27 d~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
-++++.+++|++++++|+++.+..
T Consensus 124 ~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 124 RPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccc
Confidence 368999999999999997776544
No 94
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=46.69 E-value=32 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=13.6
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 048265 5 YKDSQRILLQYVNVQVAVFY 24 (90)
Q Consensus 5 ~~~VaGI~KeiltIiisv~i 24 (90)
-|+..|| ||+.+++.+++.
T Consensus 42 KKta~gi-kev~l~l~ail~ 60 (79)
T PF15168_consen 42 KKTAIGI-KEVALVLAAILV 60 (79)
T ss_pred Hhhhhhh-HHHHHHHHHHHH
Confidence 3566777 999888766654
No 95
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.95 E-value=36 Score=23.11 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=14.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~~ 54 (90)
++.++|+|++.+++|..|.++
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 456667777777777766643
No 96
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=44.53 E-value=12 Score=26.88 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=17.8
Q ss_pred hcCccchhhhhHHHHHHhHHHHHHHH
Q 048265 25 FHDEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 25 Fgd~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
|+...+.++++|.++.-+|..+....
T Consensus 73 ~n~~~si~~~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 73 FNSHGSIISIFGPVLLSLGLMLLACS 98 (129)
T ss_pred ecCCcchhhhehHHHHHHHHHHHHhh
Confidence 46666777777777777776665554
No 97
>PHA03049 IMV membrane protein; Provisional
Probab=42.89 E-value=37 Score=21.95 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=15.1
Q ss_pred hhhHHHHHHhHHHHHHHHHH
Q 048265 33 RGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 33 n~vGl~iii~GVvlyN~~K~ 52 (90)
-++++.+++.|.++|..++-
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35678888888888877664
No 98
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=42.88 E-value=91 Score=20.10 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 048265 44 VSLFNWYKYQKL 55 (90)
Q Consensus 44 VvlyN~~K~~~~ 55 (90)
--+|+.++..+.
T Consensus 43 wh~~~l~rL~~W 54 (90)
T PF11808_consen 43 WHLYQLYRLERW 54 (90)
T ss_pred HHHHHHHHHHHH
Confidence 344445555554
No 99
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=42.23 E-value=50 Score=24.54 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.9
Q ss_pred hhHHHHHHhHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~ 52 (90)
.+|+++++-.++.||+++-
T Consensus 171 A~GL~vAIPAvi~yn~l~r 189 (216)
T COG0811 171 AIGLFVAIPAVVAYNVLRR 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999774
No 100
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=42.19 E-value=18 Score=26.17 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCcceEec--cccccccC
Q 048265 64 GMLGSPEANASAKYVIL--EEIDDLDE 88 (90)
Q Consensus 64 ~~~~s~~~~~~~~y~~~--~~~~d~~~ 88 (90)
+-+++|.++.++--..- ||+||||+
T Consensus 122 pyrp~rq~d~~p~~~~~~~dd~e~ed~ 148 (150)
T PF06084_consen 122 PYRPCRQNDNSPPIEPNGTDDEEDEDD 148 (150)
T ss_pred CCCcccccCCCCcccCCCCCccccccc
Confidence 67888887777755444 66666665
No 101
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.86 E-value=90 Score=22.36 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=36.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCccc-hhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265 4 QYKDSQRILLQYVNVQVAVFYFHDEFT-WLRGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 4 ~~~~VaGI~KeiltIiisv~iFgd~lT-~ln~vGl~iii~GVvlyN~~K~~~~ 55 (90)
+..+|.=-+|+++-+++|+++=--|++ .+-+++++.+-+||++.-+.++++.
T Consensus 40 ellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~V 92 (129)
T KOG3415|consen 40 ELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKV 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 345566667888888888764434666 5667777778888888877777653
No 102
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=41.51 E-value=23 Score=27.16 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=18.3
Q ss_pred cchhhhhHHHHHHhHHHHHHH
Q 048265 29 FTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 29 lT~ln~vGl~iii~GVvlyN~ 49 (90)
+|..+++.++++++|++++.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~ 255 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIY 255 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999988754
No 103
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=40.91 E-value=38 Score=19.97 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=24.1
Q ss_pred HHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 20 VAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 20 isv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
..+-++++.+-++..+|++.+++|.+++
T Consensus 3 ~~V~lWKg~~Kpl~~~~~~~~~~~~~~H 30 (44)
T PF09163_consen 3 PSVTLWKGVLKPLGAAGMGATAAAGFFH 30 (44)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999998876
No 104
>PRK15015 carbon starvation protein A; Provisional
Probab=40.83 E-value=62 Score=29.02 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=36.8
Q ss_pred cCccchhhhhHHHHHHhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcceEecc
Q 048265 26 HDEFTWLRGFGLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILE 81 (90)
Q Consensus 26 gd~lT~ln~vGl~iii~GVvlyN~~K~~~~~~~~~~~~~~~~s~~~~~~~~y~~~~ 81 (90)
||+++.+-++=.++++.-+.+.-|.||-..+--+..++..++++..++-..||+-+
T Consensus 29 ge~mnal~lv~aa~~~y~iaYrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~ 84 (701)
T PRK15015 29 GEQINALWIVVASVCIYLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTD 84 (701)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCC
Confidence 57877665555556656566555666554444455566777888888888888754
No 105
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=40.13 E-value=42 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=20.4
Q ss_pred ccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 28 EFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 28 ~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
+.|..-++|..++..|.+.|+.+.+.+
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~~~ 41 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSYFK 41 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888888888877654
No 106
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=39.68 E-value=1.3e+02 Score=21.16 Aligned_cols=53 Identities=9% Similarity=0.197 Sum_probs=35.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCccch--hh-hhHHHH--HHhHHHHHHHHHHHHHH
Q 048265 4 QYKDSQRILLQYVNVQVAVFYFHDEFTW--LR-GFGLFT--ILVGVSLFNWYKYQKLQ 56 (90)
Q Consensus 4 ~~~~VaGI~KeiltIiisv~iFgd~lT~--ln-~vGl~i--ii~GVvlyN~~K~~~~~ 56 (90)
.++|....+-|.....+.+++++-.+++ .+ ..|..+ ++.|+.=|=+++|-+.+
T Consensus 55 r~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~~~ 112 (136)
T PF10710_consen 55 RTGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLLRN 112 (136)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788888999999999999999887766 22 233322 45555555556665443
No 107
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=38.99 E-value=22 Score=21.01 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.4
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 048265 36 GLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 36 Gl~iii~GVvlyN~~K~~~~ 55 (90)
-++++++||++|.+.+-+++
T Consensus 18 ~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHhCCCcch
Confidence 35788999999988776544
No 108
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.89 E-value=78 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
-|=+++.++-++.+.+.+...++.|++++-+++++-.+++.
T Consensus 201 ~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~ 241 (248)
T PF08172_consen 201 PERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMS 241 (248)
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578899999999999999999999999999999888853
No 109
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.85 E-value=51 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=10.4
Q ss_pred hHHHHHHhHHHHHHHHHHHH
Q 048265 35 FGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 35 vGl~iii~GVvlyN~~K~~~ 54 (90)
+|++.++++++.|-++|..+
T Consensus 8 ~~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544
No 110
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=38.82 E-value=81 Score=23.59 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcC----------ccchhhhhHHHHHHhHHHHH
Q 048265 4 QYKDSQRILLQYVNVQVAVFYFHD----------EFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 4 ~~~~VaGI~KeiltIiisv~iFgd----------~lT~ln~vGl~iii~GVvly 47 (90)
.|..+++|+-.++...+++.+|.. .|.|+.+.|++.+.+|.+.|
T Consensus 39 r~~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP~~~~g~~t~a~g~lG~ 92 (173)
T PF08566_consen 39 RINLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDPFMVYGLATLACGALGW 92 (173)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHHHHHHHHHH
Confidence 356788899999999999988873 35677888888888887765
No 111
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=38.40 E-value=25 Score=28.75 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
+...++-+++||+.-|+..+.|+++++...++....|+.+
T Consensus 291 vfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 291 VFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred HHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 4456778899999999999999999999999998888753
No 112
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=37.75 E-value=78 Score=28.31 Aligned_cols=43 Identities=12% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHh-----HHHHHHHHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILV-----GVSLFNWYKYQKL 55 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~-----GVvlyN~~K~~~~ 55 (90)
=-++=.+++.++||-+|+..-++|+++.+. ||+++.+.+..+.
T Consensus 898 la~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~ 945 (1021)
T PF00873_consen 898 LALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRK 945 (1021)
T ss_dssp HHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 344556788999999999999999876543 4455555555444
No 113
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=37.63 E-value=70 Score=23.74 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.4
Q ss_pred hhHHHHHHhHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~ 53 (90)
..|+++.|-.++.||+++-+
T Consensus 175 a~GL~vAIPali~yn~f~~~ 194 (215)
T TIGR02796 175 AIGLFAAIPAVIAYNKLSTQ 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998753
No 114
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.54 E-value=56 Score=23.82 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVS 45 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVv 45 (90)
-.+.+++|+++=+-..+.++++|+.+.+.||+
T Consensus 76 s~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 76 SFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 45667778888888889999999999988888
No 115
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.19 E-value=12 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
+.-+..+++|.++.+|++++.-.+|.++|++|=.+...+..
T Consensus 99 lsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 99 LSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 34456688999999999999999999999999766654443
No 116
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=36.89 E-value=72 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.5
Q ss_pred hhHHHHHHhHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~ 53 (90)
..|+++.|-+++.||++.-+
T Consensus 171 A~GL~VAIPAli~yn~f~~r 190 (211)
T TIGR02797 171 AIGLVAAIPAVVIYNVFARS 190 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998754
No 117
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.94 E-value=29 Score=30.60 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.7
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHH
Q 048265 29 FTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 29 lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
++.+|-+++++.+.|++..-+.|-
T Consensus 267 fSIiNSlvIVlfLSgiv~mI~lRt 290 (628)
T KOG1278|consen 267 FSIINSLVIVLFLSGIVAMIMLRT 290 (628)
T ss_pred EehhhhHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999888774
No 118
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=35.51 E-value=18 Score=28.66 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWY 50 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~ 50 (90)
-+.+-++++.+.||++...+++-.++.+.||+...|.
T Consensus 90 aAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 90 AAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 3567789999999999999999999999999987643
No 119
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=35.32 E-value=76 Score=24.80 Aligned_cols=9 Identities=33% Similarity=0.638 Sum_probs=5.8
Q ss_pred cccccccCC
Q 048265 81 EEIDDLDEG 89 (90)
Q Consensus 81 ~~~~d~~~~ 89 (90)
||+||.+|+
T Consensus 258 ~~~ed~~~~ 266 (267)
T PRK09757 258 NEEEDYSNG 266 (267)
T ss_pred ccccccccC
Confidence 666776664
No 120
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=34.92 E-value=79 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.3
Q ss_pred hhHHHHHHhHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~ 53 (90)
..|+++.|-.++.||++.-+
T Consensus 176 a~GL~vAIPAli~yN~f~~r 195 (227)
T PRK10801 176 AIGLFAAIPAVMAYNRLNQR 195 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999997743
No 121
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=34.16 E-value=12 Score=28.45 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=10.7
Q ss_pred HHhHHHHHHHHHHHHHHhc
Q 048265 40 ILVGVSLFNWYKYQKLQAG 58 (90)
Q Consensus 40 ii~GVvlyN~~K~~~~~~~ 58 (90)
+++|.-.|-|+|..+.++.
T Consensus 170 ~l~gGGa~yYfK~~K~K~~ 188 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYKPKQE 188 (218)
T ss_pred HHhhcceEEEEEEeccccc
Confidence 3344455667887665443
No 122
>PRK13499 rhamnose-proton symporter; Provisional
Probab=33.83 E-value=69 Score=25.98 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcC---ccc----hhhhhHHHHHHhHHHHHHH
Q 048265 15 YVNVQVAVFYFHD---EFT----WLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 15 iltIiisv~iFgd---~lT----~ln~vGl~iii~GVvlyN~ 49 (90)
++..++++++||| -++ ..-++|++++++||++-.+
T Consensus 112 v~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 112 IVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888885 122 3467899999999998876
No 123
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=33.32 E-value=74 Score=22.42 Aligned_cols=43 Identities=16% Similarity=0.450 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhcCc--cchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDE--FTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~--lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
++--+++..+|++|-+.+ ++...++|+..++++.++|-|.-.-
T Consensus 19 if~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGml 63 (114)
T PF11023_consen 19 IFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGML 63 (114)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455566665443332 5566889999999999998886653
No 124
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=32.61 E-value=85 Score=25.38 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHHHHHHHHhc--Cccchhhhh--HHHHHHhHHHH
Q 048265 5 YKDSQRILLQYVNVQVAVFYFH--DEFTWLRGF--GLFTILVGVSL 46 (90)
Q Consensus 5 ~~~VaGI~KeiltIiisv~iFg--d~lT~ln~v--Gl~iii~GVvl 46 (90)
-|.+.|.++-++++.+...+++ .|+|+.+.+ |+.+++.|.+.
T Consensus 209 nKTveGl~GGilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~G 254 (303)
T COG4589 209 NKTVEGLIGGILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFCG 254 (303)
T ss_pred cchHHHHhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh
Confidence 4788899999988877766666 566666544 45777777654
No 125
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=32.45 E-value=87 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCccchh-----hhhHHHHHHhHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWL-----RGFGLFTILVGVSLF 47 (90)
Q Consensus 15 iltIiisv~iFgd~lT~l-----n~vGl~iii~GVvly 47 (90)
++..+++.+-+++.++.. ...+++++++||.+.
T Consensus 19 ~~LLv~a~Lsin~~l~LP~~l~~~~aai~MIf~Gi~lM 56 (96)
T PF07214_consen 19 MILLVLAYLSINDYLSLPAPLSTPTAAIAMIFVGIGLM 56 (96)
T ss_pred HHHHHHHHHHHcccccCcccccCchHHHHHHHHHHHHH
Confidence 345667778888876643 445788888888765
No 126
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=32.11 E-value=1.2e+02 Score=21.09 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCccchh------hhhHHHHHHhHHHHHHH
Q 048265 17 NVQVAVFYFHDEFTWL------RGFGLFTILVGVSLFNW 49 (90)
Q Consensus 17 tIiisv~iFgd~lT~l------n~vGl~iii~GVvlyN~ 49 (90)
+..+|.+=|.|-.+.+ ..+|..++++|+.+|..
T Consensus 23 igaiGllR~PD~y~RlHAatk~~TlG~~lil~g~~l~~~ 61 (118)
T PRK12587 23 LAAIGLLRLEDVYSRAHAAGKASTLGAMSLLFGTFLYFI 61 (118)
T ss_pred HHHHHHHhCCcHHHHhhhchhhhHhhHHHHHHHHHHHHh
Confidence 3456667777765543 56788999999988754
No 127
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=31.13 E-value=1.1e+02 Score=19.54 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL 46 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvl 46 (90)
++--++.++.+.++-+. .+..|..++++|++.
T Consensus 66 ii~~il~iia~i~ikk~----~k~~Gil~Ii~aii~ 97 (100)
T PF13273_consen 66 IISSILGIIASILIKKN----PKLAGILFIIAAIIS 97 (100)
T ss_pred HHHHHHHHHHHHHHcCC----chhhhhhhhHHHHHH
Confidence 33344444444444431 135566666666553
No 128
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=30.73 E-value=18 Score=29.24 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 13 LQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 13 KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
|-+=+.++|+++-+.+-.|.+..=..+|++||+++-
T Consensus 121 KPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFm 156 (337)
T KOG1580|consen 121 KPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFM 156 (337)
T ss_pred CCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhh
Confidence 455677899999999999999999999999999883
No 129
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=30.60 E-value=89 Score=25.97 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcceEecc
Q 048265 36 GLFTILVGVSLFNWYKYQKLQAGHANEDGMLGSPEANASAKYVILE 81 (90)
Q Consensus 36 Gl~iii~GVvlyN~~K~~~~~~~~~~~~~~~~s~~~~~~~~y~~~~ 81 (90)
-.++++.-+.+.-|.|+-+++-++..++..+++++.++--.||+.+
T Consensus 8 ~~~~~~l~~~Y~~Yg~~l~~~~~~~d~~~~TPA~~~~DGvDYvP~~ 53 (376)
T PF02554_consen 8 LISLAILIIAYRFYGKFLEKKFGKLDDSRPTPAHTMNDGVDYVPTN 53 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHheeccCCCCCCCCeeECCCCCCCCCCc
Confidence 3444445555556667766655566677778888888888888753
No 130
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=30.45 E-value=1.1e+02 Score=22.96 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 048265 8 SQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVS 45 (90)
Q Consensus 8 VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVv 45 (90)
+.++.=.++..+....+||-+++...++|+.+++ |++
T Consensus 128 ~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~i-Gi~ 164 (246)
T TIGR00966 128 IVALVHDVIITVGVYSLFGIEVNLTTVAALLTII-GYS 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHH-HHh
Confidence 4566667777888888999999988888876654 443
No 131
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=30.45 E-value=1.2e+02 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHH-HHHHHhcCccchh-hhhHHHHHHhHH
Q 048265 8 SQRILLQYVNVQ-VAVFYFHDEFTWL-RGFGLFTILVGV 44 (90)
Q Consensus 8 VaGI~KeiltIi-isv~iFgd~lT~l-n~vGl~iii~GV 44 (90)
||+.+--+.+++ -..++||+.++-. .-+++++..+++
T Consensus 52 VA~~IavIaIivaG~~liFGg~~~gf~Rrl~~vVlg~~i 90 (135)
T PRK13871 52 VAGFIALAAVAIAGAMLIFGGELNDFARRLCYVALVGGV 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHH
Confidence 344444434433 4568899887744 444444444444
No 132
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=30.05 E-value=1e+02 Score=23.61 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=16.8
Q ss_pred hhHHHHHHhHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~ 52 (90)
..|+++.|-+++.||++.-
T Consensus 182 a~GL~vAIPAliayn~f~~ 200 (244)
T PRK10414 182 AIGLVAAIPAVVIYNVFAR 200 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999764
No 133
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=28.98 E-value=1.1e+02 Score=23.03 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHHHhcCccchhhhhHHHHHHh
Q 048265 18 VQVAVFYFHDEFTWLRGFGLFTILV 42 (90)
Q Consensus 18 Iiisv~iFgd~lT~ln~vGl~iii~ 42 (90)
..+..+||.-.+|+.+++|+++..+
T Consensus 38 ~~v~~~f~~s~~T~~~wi~lv~s~l 62 (180)
T KOG3269|consen 38 FAVLRLFFYSSVTKTSWIGLVFSSL 62 (180)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4557889999999999999887654
No 134
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=28.94 E-value=2.6e+02 Score=23.33 Aligned_cols=51 Identities=10% Similarity=0.118 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCccchh--hhhHHHHHHhHHHHHH------HHHHHHHH
Q 048265 6 KDSQRILLQYVNVQVAVFYFHDEFTWL--RGFGLFTILVGVSLFN------WYKYQKLQ 56 (90)
Q Consensus 6 ~~VaGI~KeiltIiisv~iFgd~lT~l--n~vGl~iii~GVvlyN------~~K~~~~~ 56 (90)
.++||++-.++-++.-..+=+++-+.+ -.++.+++++-+++|+ ..||.+.+
T Consensus 157 ~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~ 215 (406)
T KOG1479|consen 157 QALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREK 215 (406)
T ss_pred chhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhh
Confidence 478899888877776666555565544 4455667777888888 55665443
No 135
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.80 E-value=61 Score=23.12 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=12.0
Q ss_pred hhHHHHHHhHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K 51 (90)
+.|++++++|++++...|
T Consensus 125 i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRK 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446777777877775554
No 136
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=28.80 E-value=1.7e+02 Score=22.26 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 9 QRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 9 aGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
.|.+.=++..+++.++.-..+.+.--...+++++|.++|-..|..+
T Consensus 151 ~aligLiiasvvn~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 151 MALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776666677766666677788888887777644
No 137
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=28.63 E-value=86 Score=22.48 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=11.7
Q ss_pred HhHHHHHHHHHHHHHHhcc
Q 048265 41 LVGVSLFNWYKYQKLQAGH 59 (90)
Q Consensus 41 i~GVvlyN~~K~~~~~~~~ 59 (90)
-+||++|-.|++-+.+.++
T Consensus 90 tiGI~~f~lY~l~Ki~~~k 108 (152)
T PF15361_consen 90 TIGIVLFILYTLFKIKKKK 108 (152)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3577777777776644433
No 138
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=28.48 E-value=63 Score=21.19 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=10.6
Q ss_pred hhHHHHHHhHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNW 49 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~ 49 (90)
++|++++..|+..+..
T Consensus 13 ~~g~~~~~~~~~~~~~ 28 (148)
T PF12158_consen 13 LIGLVLLIGGIFLYWR 28 (148)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777766644
No 139
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.99 E-value=78 Score=24.22 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCccchh------hhhHHHHHHhHHHHHH
Q 048265 17 NVQVAVFYFHDEFTWL------RGFGLFTILVGVSLFN 48 (90)
Q Consensus 17 tIiisv~iFgd~lT~l------n~vGl~iii~GVvlyN 48 (90)
+..+|++=|.|.+|.+ ..+|+.++++|+++|.
T Consensus 22 igaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l~~ 59 (197)
T PRK12585 22 LAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVGYF 59 (197)
T ss_pred HHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHHHH
Confidence 3345555566654433 3456666666655543
No 140
>PHA03231 glycoprotein BALF4; Provisional
Probab=27.53 E-value=1.5e+02 Score=27.05 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
.|+|.+..++.-++| ||..||-.+-++.+++.++.++++
T Consensus 684 ~v~ga~~SiVsG~~s--Fl~NPFGg~~iillvia~vv~v~l 722 (829)
T PHA03231 684 GVAGAVGSIVSGVIS--FLKNPFGGLAIGLLVIAVLVAVFL 722 (829)
T ss_pred hHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHhhhhhH
Confidence 344444444444444 568888866665555555444444
No 141
>PRK09697 protein secretion protein GspB; Provisional
Probab=27.27 E-value=47 Score=23.85 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=10.7
Q ss_pred hcCccchhhhhHHHHHHhHHHHH
Q 048265 25 FHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 25 Fgd~lT~ln~vGl~iii~GVvly 47 (90)
|+++++. .+|++++++|++++
T Consensus 20 ~~~~~~~--TI~~Vi~L~~~~L~ 40 (139)
T PRK09697 20 FSRQKHS--TIIYVICLLLICLW 40 (139)
T ss_pred hhhhhcc--chHHHHHHHHHHHH
Confidence 4554442 34555555555554
No 142
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=27.19 E-value=84 Score=28.57 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 048265 10 RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVS 45 (90)
Q Consensus 10 GI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVv 45 (90)
-|.=-++-.+++.+++|.+|+..-++|+++. +|++
T Consensus 897 tIPls~~G~~~~l~l~g~~l~~~sliGli~l-~Giv 931 (1040)
T PRK10503 897 TLPTAGVGALLALMIAGSELDVIAIIGIILL-IGIV 931 (1040)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHH
Confidence 3444555667778899999999999998665 4554
No 143
>PRK15049 L-asparagine permease; Provisional
Probab=26.85 E-value=2.6e+02 Score=22.83 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=7.7
Q ss_pred hhhhHHHHHHhHHHHHH
Q 048265 32 LRGFGLFTILVGVSLFN 48 (90)
Q Consensus 32 ln~vGl~iii~GVvlyN 48 (90)
.|+.+++..+.++++.-
T Consensus 447 ~~~~~~~~~~~~~~~~~ 463 (499)
T PRK15049 447 GTYTIAALPIIGILLVI 463 (499)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 144
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.55 E-value=1.1e+02 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=23.3
Q ss_pred HHHHHHHhcCccch--hhhhHHHHHHhHHHHHHHHHH
Q 048265 18 VQVAVFYFHDEFTW--LRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 18 Iiisv~iFgd~lT~--ln~vGl~iii~GVvlyN~~K~ 52 (90)
+.+.++++--+ .| .|++|+.+|+.||.......+
T Consensus 162 ~~i~v~~ll~~-HWl~nN~lgms~~I~~I~~lrL~s~ 197 (362)
T KOG2443|consen 162 SMIVVWYLLTK-HWLANNLLGMSFCIAGIEFLRLPSL 197 (362)
T ss_pred HHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHhcccch
Confidence 33444444333 44 599999999999998866554
No 145
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=25.53 E-value=1.2e+02 Score=23.89 Aligned_cols=21 Identities=10% Similarity=0.355 Sum_probs=16.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHH
Q 048265 35 FGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 35 vGl~iii~GVvlyN~~K~~~~ 55 (90)
.|+++++.|+.+|-++|.+++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHHHHHHhhhHHhheechhh
Confidence 688899999998877766544
No 146
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=25.09 E-value=2e+02 Score=22.50 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
++.|+|+++|+ +=-.+.+.-|++-|.-.|-+
T Consensus 132 IClIIIAVLfL---------ICT~LfLSTVVLANKVS~LK 162 (227)
T PF05399_consen 132 ICLIIIAVLFL---------ICTLLFLSTVVLANKVSSLK 162 (227)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 67788888864 45667778888888765543
No 147
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=24.50 E-value=1.5e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 10 RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 10 GI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
.|+-|+..|++=.++|.+.+++..++..+.++.-+...|+.+.+
T Consensus 156 AIvDDlgaIlVIA~FYt~~i~~~~L~~a~~~~~~l~~l~r~~v~ 199 (378)
T PF06965_consen 156 AIVDDLGAILVIALFYTDGISLLWLLLAAAALLLLFVLNRLGVR 199 (378)
T ss_dssp HHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhhhhhHhheeeeeCCCCCHHHHHHHHHHHHHHHHHHHCCCc
Confidence 57788888888889999999998887777777777777766643
No 148
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.35 E-value=2.7e+02 Score=19.90 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHhcCccchh-hhhHHHHHH--hHHHHHHHHHHHHHH
Q 048265 9 QRILLQYVNVQVAVFYFHDEFTWL-RGFGLFTIL--VGVSLFNWYKYQKLQ 56 (90)
Q Consensus 9 aGI~KeiltIiisv~iFgd~lT~l-n~vGl~iii--~GVvlyN~~K~~~~~ 56 (90)
..++--+++++.++.++++++... .=+++.+.+ +=++...+.+|++.+
T Consensus 22 ~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~~~y~~~~ 72 (149)
T PF11694_consen 22 LIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQYSDYQQNQ 72 (149)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445677888888999987743 333333333 233345566666544
No 149
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=23.99 E-value=36 Score=16.05 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=3.2
Q ss_pred ccccccC
Q 048265 82 EIDDLDE 88 (90)
Q Consensus 82 ~~~d~~~ 88 (90)
++||+|+
T Consensus 8 ~eeDed~ 14 (15)
T PF10529_consen 8 EEEDEDD 14 (15)
T ss_pred ccccccc
Confidence 3455544
No 150
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.82 E-value=98 Score=26.10 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=19.7
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHH
Q 048265 29 FTWLRGFGLFTILVGVSLFNWYKY 52 (90)
Q Consensus 29 lT~ln~vGl~iii~GVvlyN~~K~ 52 (90)
|+.-|++.+.++++|++++.+.+.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 677889999999999988865443
No 151
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=23.55 E-value=1.7e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSL 46 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvl 46 (90)
.+..++=+++..+....+||-+++..-++|+.. ++|+..
T Consensus 155 al~al~~dv~~~l~~l~l~g~~l~~~~iaglLt-liG~sv 193 (297)
T PRK13021 155 ALFALVHDVIFVLAFFALTQMEFNLTVLAAVLA-ILGYSL 193 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHH-HHHHee
Confidence 456677788888899999999999888888754 455544
No 152
>COG4827 Predicted transporter [General function prediction only]
Probab=23.49 E-value=1.3e+02 Score=23.59 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=22.3
Q ss_pred chhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265 30 TWLRGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 30 T~ln~vGl~iii~GVvlyN~~K~~~~ 55 (90)
+..+++|+-..+.++++-||.|+.|.
T Consensus 175 ~~mll~Glyfllaailipay~~~k~m 200 (239)
T COG4827 175 SAMLLLGLYFLLAAILIPAYMKSKQM 200 (239)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhc
Confidence 35789999999999999999998654
No 153
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.27 E-value=1.4e+02 Score=20.97 Aligned_cols=17 Identities=12% Similarity=0.252 Sum_probs=10.2
Q ss_pred hHHHHHHhHHHHHHHHH
Q 048265 35 FGLFTILVGVSLFNWYK 51 (90)
Q Consensus 35 vGl~iii~GVvlyN~~K 51 (90)
+|.+++.+|+......+
T Consensus 48 lg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 48 LGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 46677777766554433
No 154
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=23.11 E-value=1.1e+02 Score=25.53 Aligned_cols=45 Identities=4% Similarity=0.073 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHHHHH
Q 048265 10 RILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYKYQK 54 (90)
Q Consensus 10 GI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K~~~ 54 (90)
.|+-|.-.|++=.++|.+++++..+.+-++++.=.+..|+.+..+
T Consensus 163 AI~DDlgAIvIIAlFYt~~Ls~~al~~a~~~i~vL~~lN~~~v~~ 207 (390)
T COG3004 163 AIIDDLGAIVIIALFYTTDLSMAALGIAALAIAVLAVLNRLGVRR 207 (390)
T ss_pred HHHhhcchhhhhhhhhcCCccHHHHHHHHHHHHHHHHHHHhCchh
Confidence 466777778888899999999998888888888888888877654
No 155
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.81 E-value=1.2e+02 Score=20.52 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCccchh------hhhHHHHHHhHHHHHHH
Q 048265 16 VNVQVAVFYFHDEFTWL------RGFGLFTILVGVSLFNW 49 (90)
Q Consensus 16 ltIiisv~iFgd~lT~l------n~vGl~iii~GVvlyN~ 49 (90)
++..+|++=|.|.+|.+ ..+|..++++|+++++.
T Consensus 15 l~g~iGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~ 54 (104)
T PRK12675 15 FFGALGLLRFPDVYTRLHAATKCDTGGAMGIILALALASD 54 (104)
T ss_pred HHHHHHHHhCCcHHHHhhhchhhhhhhHHHHHHHHHHHhc
Confidence 34455666666655543 45677777777776654
No 156
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.46 E-value=1.1e+02 Score=22.08 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHhcCccchh------hhhHHHHHHhHHHHHH
Q 048265 19 QVAVFYFHDEFTWL------RGFGLFTILVGVSLFN 48 (90)
Q Consensus 19 iisv~iFgd~lT~l------n~vGl~iii~GVvlyN 48 (90)
.+|.+=|.|.+|.+ ..+|..++++|+++|.
T Consensus 27 aIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~ 62 (145)
T PRK12586 27 AIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYF 62 (145)
T ss_pred HHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHH
Confidence 34555566654433 3456666666666653
No 157
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.43 E-value=29 Score=28.86 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCcceEec
Q 048265 72 NASAKYVIL 80 (90)
Q Consensus 72 ~~~~~y~~~ 80 (90)
..+++|.-|
T Consensus 391 ~~~~~YtsL 399 (439)
T PF02480_consen 391 PFSPVYTSL 399 (439)
T ss_dssp ---------
T ss_pred cCCCccccC
Confidence 344555555
No 158
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=22.33 E-value=2.6e+02 Score=18.91 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=23.4
Q ss_pred chhhhHHHHHHHHHHHHHHHhcC-ccc---hhhhhHHHHHHhHH
Q 048265 5 YKDSQRILLQYVNVQVAVFYFHD-EFT---WLRGFGLFTILVGV 44 (90)
Q Consensus 5 ~~~VaGI~KeiltIiisv~iFgd-~lT---~ln~vGl~iii~GV 44 (90)
|+.+.|++--++..+.-.+.+++ .+. +.+++.+++.++++
T Consensus 2 ~g~i~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 45 (163)
T PF13858_consen 2 YGLIFGLILILFFLLSYLLGMHDIKYPSNSWLGILSMVITIIFI 45 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccccHhHHHHHHHHHHHHHHH
Confidence 56777877777666666666654 333 34444455555554
No 159
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.30 E-value=1.1e+02 Score=23.23 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.3
Q ss_pred hhhhHHHHHHhHHHHHHH
Q 048265 32 LRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 32 ln~vGl~iii~GVvlyN~ 49 (90)
.|.+|+.+++.|++..-.
T Consensus 176 ~N~~gl~~~~fg~~V~~~ 193 (214)
T cd08764 176 GNFIGIVLVIFGGLVVYL 193 (214)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 588999999998876644
No 160
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.27 E-value=1.6e+02 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
-.+-.+++.+++|.+|+...++|++ .++||+.=|
T Consensus 881 a~~G~~~~L~i~~~~l~~~s~~G~i-~L~GivVnn 914 (1017)
T PRK09579 881 SICGALIPLFLGVSSMNIYTQVGLV-TLIGLISKH 914 (1017)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 3444566778899999999999954 556665433
No 161
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=22.24 E-value=41 Score=20.16 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=8.0
Q ss_pred CCcceEecc-ccc
Q 048265 73 ASAKYVILE-EID 84 (90)
Q Consensus 73 ~~~~y~~~~-~~~ 84 (90)
+-..||+|- |++
T Consensus 9 dqeayvilsdde~ 21 (47)
T PF06975_consen 9 DQEAYVILSDDED 21 (47)
T ss_pred hhhheeecccccc
Confidence 446899994 444
No 162
>COG4327 Predicted membrane protein [Function unknown]
Probab=22.14 E-value=1.2e+02 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhhhHH
Q 048265 10 RILLQYVNVQVAVFYFHDEFTWLRGFGL 37 (90)
Q Consensus 10 GI~KeiltIiisv~iFgd~lT~ln~vGl 37 (90)
-.+.-+.+..+.+.+|-+.|+.+.++|+
T Consensus 23 ~lL~vwflVSfvvi~fa~alst~rifg~ 50 (101)
T COG4327 23 ALLGVWFLVSFVVILFARALSTMRIFGW 50 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccEEecc
Confidence 3445566777788999999997777664
No 163
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.79 E-value=1.2e+02 Score=21.19 Aligned_cols=7 Identities=29% Similarity=0.804 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 048265 36 GLFTILV 42 (90)
Q Consensus 36 Gl~iii~ 42 (90)
|++.+++
T Consensus 76 GvIg~Il 82 (122)
T PF01102_consen 76 GVIGIIL 82 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 164
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.54 E-value=1e+02 Score=18.82 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=9.9
Q ss_pred HHHHHHhHHHHHHH--HHHHHH
Q 048265 36 GLFTILVGVSLFNW--YKYQKL 55 (90)
Q Consensus 36 Gl~iii~GVvlyN~--~K~~~~ 55 (90)
-+.++++||+.=|. .||..+
T Consensus 7 lIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc
Confidence 44455555555554 355433
No 165
>COG3374 Predicted membrane protein [Function unknown]
Probab=21.53 E-value=50 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=17.8
Q ss_pred hcCccchhhhhHHHHHHhHHHHHHHHHHH
Q 048265 25 FHDEFTWLRGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 25 Fgd~lT~ln~vGl~iii~GVvlyN~~K~~ 53 (90)
|+|++- ++|+++...+|..|+-++.+
T Consensus 75 F~Dp~l---llGi~ll~~ais~~~g~dl~ 100 (197)
T COG3374 75 FYDPYL---LLGIVLLSVAISVYKGYDLQ 100 (197)
T ss_pred ecChHH---HHHHHHHHHHHHHHcCcchh
Confidence 444443 67888888888887766654
No 166
>PF04549 CD47: CD47 transmembrane region; InterPro: IPR013147 This family represents the transmembrane region of CD47 leukocyte antigen [, ].
Probab=21.53 E-value=73 Score=23.43 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHH
Q 048265 7 DSQRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVS 45 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVv 45 (90)
-++|++=+++.+..+.+++....+..|..|+.++..-..
T Consensus 37 ~~~gl~~Tii~ivG~~l~ip~~~s~~~~~Gl~LI~i~~~ 75 (157)
T PF04549_consen 37 YVAGLWITIIVIVGQYLFIPGEYSYKNIYGLGLIVIPIF 75 (157)
T ss_pred HHHHHHHHHHHHhhheeEecCCceEeeecceehHHHHHH
Confidence 468888899999999999999999998888887765443
No 167
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=21.49 E-value=1.5e+02 Score=17.76 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhcCccchhhh
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRG 34 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~ 34 (90)
.--++.+.++.+++.++.-..-+
T Consensus 34 ~~m~~~~~~s~~~~~~~~~~~~~ 56 (71)
T PF04304_consen 34 LMMWLSMGISAFFFVPNLWVRIV 56 (71)
T ss_pred HHHHHHHHHHHHHHccHHHHHHH
Confidence 33455666666777776443333
No 168
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=21.31 E-value=2.2e+02 Score=22.39 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhcCccch--hhhhHHHHHHhHHHHHHH
Q 048265 10 RILLQYVNVQVAVFYFHDEFTW--LRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 10 GI~KeiltIiisv~iFgd~lT~--ln~vGl~iii~GVvlyN~ 49 (90)
-++-..+++..|.+++...++. ....+++.++.+++++-+
T Consensus 171 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (365)
T PF03125_consen 171 IIFSQIFSIIFSYFVIFNIIPFIFHVIIFIVSNIISFVLFFI 212 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777766666554 344555555556554443
No 169
>PRK01637 hypothetical protein; Reviewed
Probab=21.28 E-value=3.7e+02 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHH
Q 048265 31 WLRGFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 31 ~ln~vGl~iii~GVvlyN~~K~~~~ 55 (90)
|+++.++++.+.+.+...+.+.++.
T Consensus 248 Wlyl~~~ilL~Gaelna~~~~~~~~ 272 (286)
T PRK01637 248 WVYLSWCIVLLGAEITATLGEYRKL 272 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888887776666655443
No 170
>PF15038 Jiraiya: Jiraiya
Probab=21.05 E-value=2.6e+02 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=13.8
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHh
Q 048265 35 FGLFTILVGVSLFNWYKYQKLQA 57 (90)
Q Consensus 35 vGl~iii~GVvlyN~~K~~~~~~ 57 (90)
.|.+++ ..+..+|.++|+|.++
T Consensus 146 ~g~vfl-~~~~vh~l~~w~r~~~ 167 (175)
T PF15038_consen 146 SGAVFL-GAAMVHNLYRWQRETR 167 (175)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcc
Confidence 344443 3455789999987654
No 171
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.04 E-value=1.1e+02 Score=21.19 Aligned_cols=27 Identities=26% Similarity=0.552 Sum_probs=15.9
Q ss_pred hhHHHHH---HhHHHHHHHHHHHHHHhccc
Q 048265 34 GFGLFTI---LVGVSLFNWYKYQKLQAGHA 60 (90)
Q Consensus 34 ~vGl~ii---i~GVvlyN~~K~~~~~~~~~ 60 (90)
++|++++ +.+|+...+.+|++.+++++
T Consensus 45 llgL~i~a~aFi~Va~~a~~ty~Ei~~Gk~ 74 (104)
T TIGR03745 45 LLGLLIAAIAFIGVAYHALGTYHEIRTGKA 74 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 3455554 45566666677776666554
No 172
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=20.99 E-value=1.2e+02 Score=23.64 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhcCcc----chhhhhHHHHHHhHHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEF----TWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~l----T~ln~vGl~iii~GVvlyN~~K 51 (90)
++..+-+.++|. .|++.+ .....+|.++++.|++++---|
T Consensus 92 ivatiP~~i~Gl-~l~~~i~~~~~~~~~i~~~Lii~GilL~~~~~ 135 (276)
T PRK12554 92 IIGTIPAGVLGL-LFKDRIETVLRDLRIVAIALIVTGVLLWLADN 135 (276)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 455543 3335799999999999985443
No 173
>PRK09577 multidrug efflux protein; Reviewed
Probab=20.95 E-value=1.2e+02 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 15 YVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 15 iltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
++-.+++.+++|-+|+..-++|++ .++||+.=|
T Consensus 903 l~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 903 VIGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 344577889999999999999998 677776533
No 174
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=20.89 E-value=2.8e+02 Score=18.73 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=17.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~~~ 55 (90)
+.|+++.+..+++||+.+-+..
T Consensus 107 ~~GL~vai~~~~~~~~l~~~~~ 128 (139)
T PF01618_consen 107 AYGLVVAIPALPFYNYLKRRVE 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999988776443
No 175
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=20.82 E-value=88 Score=21.91 Aligned_cols=31 Identities=13% Similarity=-0.025 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 17 NVQVAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 17 tIiisv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
-+++..++=|-+.+..-+.|-++|++|+.+.
T Consensus 72 sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi 102 (109)
T COG1742 72 SLAWLWVVDGVRPDRYDWIGAAICLAGVAVI 102 (109)
T ss_pred HHHHHHHHcCcCCcHHHhhhHHHHHhceeee
Confidence 3444555555667788899999999998765
No 176
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=20.80 E-value=1.5e+02 Score=22.33 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.2
Q ss_pred chhhhhHHHHHHhHHHHH
Q 048265 30 TWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 30 T~ln~vGl~iii~GVvly 47 (90)
|++-++|+++++..|..|
T Consensus 157 t~igi~g~ail~a~v~s~ 174 (187)
T PF01024_consen 157 TPIGILGIAILMAVVGSL 174 (187)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 777888998888777765
No 177
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=20.70 E-value=63 Score=24.31 Aligned_cols=13 Identities=38% Similarity=0.922 Sum_probs=5.4
Q ss_pred hHHHHHHhHHHHH
Q 048265 35 FGLFTILVGVSLF 47 (90)
Q Consensus 35 vGl~iii~GVvly 47 (90)
+|+..+.-|+..+
T Consensus 107 lGl~~ivygv~i~ 119 (191)
T PF06168_consen 107 LGLILIVYGVAIY 119 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 178
>PRK13661 hypothetical protein; Provisional
Probab=20.51 E-value=3.4e+02 Score=19.95 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCccchhhhhH--------HHHHHhHHHHHHHHHHHHHHhcc
Q 048265 16 VNVQVAVFYFHDEFTWLRGFG--------LFTILVGVSLFNWYKYQKLQAGH 59 (90)
Q Consensus 16 ltIiisv~iFgd~lT~ln~vG--------l~iii~GVvlyN~~K~~~~~~~~ 59 (90)
+.-.+.+++++||++-.-.-| +.+.+.|-++++.+...+.++++
T Consensus 127 i~~~~di~~y~~p~~~v~~q~~~~~~~n~~~~~i~g~~ll~~ya~~~~~~~~ 178 (182)
T PRK13661 127 IAPIGDIIIYSEPANKVFAQGIVAAIANIISIAIIGTLLLKAYAKSRTKKGS 178 (182)
T ss_pred HHHHHHHHHhCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 345667788999988543333 34455666666655554444443
Done!