Query 048265
Match_columns 90
No_of_seqs 100 out of 263
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.2 1.3E-06 4.3E-11 60.5 3.8 41 11-51 65-105 (137)
2 3b5d_A Multidrug transporter E 98.0 4.9E-06 1.7E-10 54.8 3.9 40 12-51 66-105 (110)
3 4dx5_A Acriflavine resistance 26.1 1.2E+02 0.004 25.8 5.6 32 11-42 905-936 (1057)
4 3l1l_A Arginine/agmatine antip 25.2 59 0.002 23.7 3.3 21 33-53 410-430 (445)
5 2jo1_A Phospholemman; FXYD1, N 23.4 65 0.0022 20.1 2.7 15 38-52 26-40 (72)
6 3ne5_A Cation efflux system pr 23.1 1.3E+02 0.0043 25.7 5.2 31 12-42 912-942 (1054)
7 1afo_A Glycophorin A; integral 20.9 75 0.0026 17.8 2.4 15 7-21 19-33 (40)
8 2zxe_G FXYD10, phospholemman-l 18.8 68 0.0023 20.1 2.1 9 39-47 30-38 (74)
9 3aqp_A Probable secdf protein- 18.7 3.1E+02 0.011 22.7 6.6 35 9-44 599-633 (741)
10 4dx5_A Acriflavine resistance 16.8 3.9E+02 0.013 22.6 6.9 30 12-41 373-402 (1057)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=1.3e-06 Score=60.53 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
-+.-++++++|+++|||++|+.+++|++++++||++.+..+
T Consensus 65 ~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 35678899999999999999999999999999999997543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.00 E-value=4.9e-06 Score=54.84 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNWYK 51 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~~K 51 (90)
+.-++++++|+++|||++|+.+++|++++++||++.+..+
T Consensus 66 ~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4678899999999999999999999999999999997643
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=26.05 E-value=1.2e+02 Score=25.84 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHh
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILV 42 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~ 42 (90)
+.=.++..+++..+||-+++...++|+++++.
T Consensus 905 i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~G 936 (1057)
T 4dx5_A 905 VPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 936 (1057)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 33344555666778999999999999876644
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=25.24 E-value=59 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=16.1
Q ss_pred hhhHHHHHHhHHHHHHHHHHH
Q 048265 33 RGFGLFTILVGVSLFNWYKYQ 53 (90)
Q Consensus 33 n~vGl~iii~GVvlyN~~K~~ 53 (90)
-+.|+++++.|+.+|-+.+.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 355888899999999776653
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=23.40 E-value=65 Score=20.13 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHH
Q 048265 38 FTILVGVSLFNWYKY 52 (90)
Q Consensus 38 ~iii~GVvlyN~~K~ 52 (90)
+++++||++.-..|.
T Consensus 26 vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 26 ILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc
Confidence 444555555544444
No 6
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=23.07 E-value=1.3e+02 Score=25.65 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHHh
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTILV 42 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii~ 42 (90)
.=.++..+++.++||-+++...++|+++++.
T Consensus 912 p~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 912 PFALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 3344555667788999999999999876544
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=20.88 E-value=75 Score=17.75 Aligned_cols=15 Identities=0% Similarity=-0.068 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVA 21 (90)
Q Consensus 7 ~VaGI~KeiltIiis 21 (90)
-.|||++.++.|..+
T Consensus 19 vmaGiIG~IllI~y~ 33 (40)
T 1afo_A 19 VMAGVIGTILLISYG 33 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554433
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=18.77 E-value=68 Score=20.10 Aligned_cols=9 Identities=11% Similarity=0.564 Sum_probs=3.9
Q ss_pred HHHhHHHHH
Q 048265 39 TILVGVSLF 47 (90)
Q Consensus 39 iii~GVvly 47 (90)
++++||++.
T Consensus 30 Lfi~GI~ii 38 (74)
T 2zxe_G 30 LCVIGIIIL 38 (74)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444444
No 9
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=18.66 E-value=3.1e+02 Score=22.71 Aligned_cols=35 Identities=23% Similarity=0.095 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHH
Q 048265 9 QRILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGV 44 (90)
Q Consensus 9 aGI~KeiltIiisv~iFgd~lT~ln~vGl~iii~GV 44 (90)
..++=.++..+....+||-+++...++|+.++ +|+
T Consensus 599 ~~l~~~~~~~~g~l~l~g~~l~~~~i~~~l~l-iGi 633 (741)
T 3aqp_A 599 LAVAHDVAIVAGMYSLLGLEFSIPTIAALLTI-VGY 633 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH-HHH
Confidence 44555566666677789999999888887654 554
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=16.77 E-value=3.9e+02 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCccchhhhhHHHHHH
Q 048265 12 LLQYVNVQVAVFYFHDEFTWLRGFGLFTIL 41 (90)
Q Consensus 12 ~KeiltIiisv~iFgd~lT~ln~vGl~iii 41 (90)
.=.++..++...++|-+++.+.++|+++.+
T Consensus 373 p~~~~~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 373 PVVLLGTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 334445556677899999999998887665
Done!