Query 048265
Match_columns 90
No_of_seqs 100 out of 263
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 13:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048265.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048265hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 40.4 6.2 0.00045 21.4 1.5 28 20-47 3-30 (45)
2 d1iwga8 f.35.1.1 (A:513-566,A: 33.8 56 0.0041 21.1 7.6 36 14-49 94-129 (222)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 26.5 21 0.0015 20.6 2.5 22 34-55 25-46 (91)
4 d1cola_ f.1.1.1 (A:) Colicin A 24.4 34 0.0025 23.3 3.5 21 26-47 162-182 (197)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 21.2 95 0.0069 19.6 6.7 38 11-48 73-110 (199)
6 d1n1ea1 a.100.1.6 (A:198-357) 20.4 31 0.0023 21.6 2.5 17 7-23 7-23 (160)
7 d1txga1 a.100.1.6 (A:181-335) 18.8 60 0.0044 20.1 3.7 29 7-35 6-37 (155)
8 d1v54m_ f.23.7.1 (M:) Mitochon 14.4 64 0.0046 16.9 2.4 19 27-45 8-27 (43)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 13.3 57 0.0042 18.7 2.3 22 34-55 36-57 (100)
10 d2axti1 f.23.37.1 (I:1-35) Pho 12.5 56 0.0041 16.4 1.8 13 14-26 10-22 (35)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=40.44 E-value=6.2 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=24.1
Q ss_pred HHHHHhcCccchhhhhHHHHHHhHHHHH
Q 048265 20 VAVFYFHDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 20 isv~iFgd~lT~ln~vGl~iii~GVvly 47 (90)
.++.+|++.+-++..+|++.++++.+++
T Consensus 3 ~~V~lWKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 3 TSVSLWKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999888876
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=33.77 E-value=56 Score=21.12 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHHH
Q 048265 14 QYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFNW 49 (90)
Q Consensus 14 eiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN~ 49 (90)
.++..+++..+++-+++....+|+++++...+-+..
T Consensus 94 ~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i 129 (222)
T d1iwga8 94 GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAI 129 (222)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhhhhcccccchhhhhhhHHH
Confidence 344556677788999999998888886655554443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=26.51 E-value=21 Score=20.65 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=16.5
Q ss_pred hhHHHHHHhHHHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~~~ 55 (90)
++.+++.+.|..+|-..||++.
T Consensus 25 ~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 25 MLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHhhheeeecc
Confidence 4556677888888988999643
No 4
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=24.39 E-value=34 Score=23.29 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=14.3
Q ss_pred cCccchhhhhHHHHHHhHHHHH
Q 048265 26 HDEFTWLRGFGLFTILVGVSLF 47 (90)
Q Consensus 26 gd~lT~ln~vGl~iii~GVvly 47 (90)
+-|.|++-++|+ +++..|..|
T Consensus 162 g~~~~~iGI~g~-li~~~v~al 182 (197)
T d1cola_ 162 GVPAIAVGIAGI-LLAAVVGAL 182 (197)
T ss_dssp CSCHHHHHHHHH-HHHHHHHHH
T ss_pred cccccHHHHHHH-HHHHHHHHH
Confidence 667788888888 555555444
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=21.19 E-value=95 Score=19.55 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhHHHHHHhHHHHHH
Q 048265 11 ILLQYVNVQVAVFYFHDEFTWLRGFGLFTILVGVSLFN 48 (90)
Q Consensus 11 I~KeiltIiisv~iFgd~lT~ln~vGl~iii~GVvlyN 48 (90)
+.--++..+....+||-+++.....++.+++...+-+.
T Consensus 73 i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 73 VPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp HHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 33445555666778888999988888887777666443
No 6
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=20.36 E-value=31 Score=21.57 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHH
Q 048265 7 DSQRILLQYVNVQVAVF 23 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~ 23 (90)
-++|.+|.++.|..|+.
T Consensus 7 E~~galKNi~Aia~Gi~ 23 (160)
T d1n1ea1 7 EVASAVKNVLAIGSGVA 23 (160)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37899999999988876
No 7
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.80 E-value=60 Score=20.13 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHH---hcCccchhhhh
Q 048265 7 DSQRILLQYVNVQVAVFY---FHDEFTWLRGF 35 (90)
Q Consensus 7 ~VaGI~KeiltIiisv~i---Fgd~lT~ln~v 35 (90)
.++|.+|.++.|..|+.- +++.....|.-
T Consensus 6 Ei~galKNi~Aia~Gi~~gl~~g~~~~~~N~~ 37 (155)
T d1txga1 6 EITSALKNVYSIAIAWIRGYESRKNVEMSNAK 37 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHH
Confidence 478999999999999863 44443334443
No 8
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.42 E-value=64 Score=16.88 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=11.4
Q ss_pred Cccchh-hhhHHHHHHhHHH
Q 048265 27 DEFTWL-RGFGLFTILVGVS 45 (90)
Q Consensus 27 d~lT~l-n~vGl~iii~GVv 45 (90)
++++.. +.+|+.+++++++
T Consensus 8 ~~ls~~E~aigLt~~f~~~L 27 (43)
T d1v54m_ 8 TPTSPKEQAIGLSVTFLSFL 27 (43)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 345543 6677777766554
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.28 E-value=57 Score=18.73 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=16.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHH
Q 048265 34 GFGLFTILVGVSLFNWYKYQKL 55 (90)
Q Consensus 34 ~vGl~iii~GVvlyN~~K~~~~ 55 (90)
++++.+.+.|+..|...||+++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 4566677888888888888643
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.47 E-value=56 Score=16.43 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhc
Q 048265 14 QYVNVQVAVFYFH 26 (90)
Q Consensus 14 eiltIiisv~iFg 26 (90)
.+++.++|.++||
T Consensus 10 ~vV~fFv~lFiFG 22 (35)
T d2axti1 10 IVVTFFVLLFVFG 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 3455555666554
Done!