BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048267
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 3 ALRQQIAKMRQSFFDEEILDKYFLQLEQL-EDISNPGFVKDVVTLYLRDSTKTLATIEDE 61
ALR+Q+ + S F ++D+ F QL+ L ED PGFV +VVTL+ D+ + ++ +
Sbjct: 5 ALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISELAAL 64
Query: 62 MAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGN 106
+ + VDF +D HQLKGSSASVGA KV + R+ C++ N
Sbjct: 65 LDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKN 109
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 3 ALRQQIAKMRQSFFDEEILDKYFLQLEQLED-ISNPGFVKDVVTLYLRDSTKTLATIEDE 61
ALR Q+ + S F + ++D+ F QL+ L+D PGFV +VVTL+ D+ + + I
Sbjct: 5 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 62 MAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKE 104
+ + V+F +D HQLKGSSASVGA KV + R+ C++
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQD 107
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%)
Query: 13 QSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNL 72
+S F E ILD FLQL+QL+D SNP FV VVTL+ +DS + L + + + VDF +
Sbjct: 20 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 79
Query: 73 DKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
D HQLKGSS+S+GA +V N R C++ N+EA
Sbjct: 80 DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 116
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%)
Query: 4 LRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMA 63
+R+Q +S F E LD FLQL+QL+D +NP FV +VV+L+ DS + L + +
Sbjct: 6 MRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD 65
Query: 64 KSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
+ +DF +D HQ KGSSAS+GA +V N R C+E N++A
Sbjct: 66 QQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDA 111
>pdb|2EJW|A Chain A, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|B Chain B, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|E Chain E, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
pdb|2EJW|F Chain F, Homoserine Dehydrogenase From Thermus Thermophilus Hb8
Length = 332
Score = 29.3 bits (64), Expect = 0.67, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 24 YFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSS 83
Y L LE+ E++S G V + + +RD K A ++ + P D + D + G
Sbjct: 19 YNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLLEADLVVEAMGGVE 78
Query: 84 A 84
A
Sbjct: 79 A 79
>pdb|1YC8|A Chain A, Caban33- Y37vE44GR45L TRIPLE MUTANT
pdb|1YC8|B Chain B, Caban33- Y37vE44GR45L TRIPLE MUTANT
pdb|1YZZ|A Chain A, Humanized Caban33 At Room Temperature
pdb|1YZZ|B Chain B, Humanized Caban33 At Room Temperature
Length = 124
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 28 LEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPV 67
LE + IS+PG T+Y +DS K TI + AK+ V
Sbjct: 45 LEWVSSISSPG------TIYYQDSVKGRFTISRDNAKNTV 78
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 49 RDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNK 97
++ TK +IEDE+ +S MN F QL S + + V+ E+NK
Sbjct: 12 KEVTKVKQSIEDELIRSDSQLMN----FPQL--PSNGIPQDDVIEELNK 54
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 49 RDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNK 97
++ TK +IEDE+ +S MN F QL S + + V+ E+NK
Sbjct: 12 KEVTKVKQSIEDELIRSDSQLMN----FPQL--PSNGIPQDDVIEELNK 54
>pdb|3NBI|A Chain A, Crystal Structure Of Human Rmi1 N-Terminus
Length = 216
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 24 YFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSP 66
Y LQ+ L D+S P + + L +++T L T E ++ P
Sbjct: 88 YALQINSLVDVSQPAY-SQIQKLRGKNTTNDLVTAEAQVTPKP 129
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 41 KDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKV 91
K ++ ++ + T A ++ ++ + LD H LKGSSA++G ++
Sbjct: 27 KGLIIQFIDQAQTTFAQMQRQLDGEK-NLTELDNLGHFLKGSSAALGLQRI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,918,270
Number of Sequences: 62578
Number of extensions: 100924
Number of successful extensions: 288
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 25
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)