BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048267
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 8 IAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPV 67
I K Q + DE+ F++LE+L+D +NP FV++V LY +DS + + I+ + +
Sbjct: 4 IGKCMQGYLDEQ-----FMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSF 58
Query: 68 DFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
DF LD HQ KGSS S+GA+KV E RE+C+ GN E
Sbjct: 59 DFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEG 100
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 3 ALRQQIAKMRQSFFDEEILDKYFLQLEQLED-ISNPGFVKDVVTLYLRDSTKTLATIEDE 61
ALR Q+ + S F + ++D+ F QL+ L+D PGFV +VVTL+ D+ + + I
Sbjct: 5 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATL 64
Query: 62 MAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKE 104
+ + V+F +D HQLKGSSASVGA KV + R+ C++
Sbjct: 65 LEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQD 107
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%)
Query: 13 QSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNL 72
+S F E ILD FLQL+QL+D SNP FV VVTL+ +DS + L + + + VDF +
Sbjct: 15 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 74
Query: 73 DKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
D HQLKGSS+S+GA +V N R C++ N+EA
Sbjct: 75 DPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEA 111
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 4 LRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMA 63
L++Q S + + LD F +L +L+D P FV +VV+L+ D +K + T+ +
Sbjct: 9 LQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLE 68
Query: 64 KSP-VDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
+ VDF +D HQLKGSS+SVGA +V N +E C N E
Sbjct: 69 RPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREG 115
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 4 LRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEM- 62
L++Q S + + LD F +L++L+D +P FV +V++L+ D K ++ + +
Sbjct: 8 LQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALD 67
Query: 63 AKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
VDF + HQLKGSS+SVGA +V +E C+ N E
Sbjct: 68 TTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEG 114
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 4 LRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMA 63
L+++ S + + LD F +L++L+D +P FV +VVTL+ D K ++ + +
Sbjct: 8 LQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALD 67
Query: 64 KSP-VDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNLEA 109
++ VDF + HQLKGSS+SVGA +V +E C N E
Sbjct: 68 QTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEG 114
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 1 MEALRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTK-TLATIE 59
++ L+ I ++ S F + +LD+ FLQL+QL+D ++P FV DV+ +Y +S K
Sbjct: 6 VDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRL 65
Query: 60 DEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLN 93
M + D+ + +QL GSS+S+GA +V N
Sbjct: 66 LLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRN 99
>sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1
Length = 268
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 31 LEDISNPGFVKDVVTLYLRDSTKTLAT------IEDEMAKSPVDFMNLDKCFHQLKGSSA 84
E S P + +++ YL+ + +L + DE+AK D +NL + KG
Sbjct: 58 FEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDL 117
Query: 85 SVGANKVLNEVNKAREHC 102
S+ + LNE+ K EH
Sbjct: 118 SLAQYEELNELEKQLEHA 135
>sp|Q966Q9|CBPH_DICDI Calcium-binding protein H OS=Dictyostelium discoideum GN=cbpH PE=1
SV=1
Length = 165
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 42 DVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKARE 100
D + Y +D + D+ + +DF L++CF + AN + E++K R+
Sbjct: 83 DQIKQYFQDDIEAFLLRYDKNRDNRIDFKELEQCFESIGSDHPKENANHIFTEIDKNRD 141
>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1
Length = 295
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 14 SFFDEEILDK------YFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPV 67
SF DE I DK F QL +++D F K +V Y + T+A ++ +
Sbjct: 154 SFEDELIQDKQLIDHSVFDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK-- 211
Query: 68 DFMNLDKCFHQLKGSSASVGANKV 91
D L H LKGSSA +G K+
Sbjct: 212 DLKKLSSLGHFLKGSSAVLGLTKM 235
>sp|Q928D5|Y2600_LISIN Uncharacterized protein Lin2600 OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=lin2600 PE=4 SV=1
Length = 226
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNP----GFVKDVVT-----LYLRDST 52
+A+R I+K DE+I +YF+ E ++IS G KD V L RDS+
Sbjct: 39 KAVRLGISKNSVWTEDEDIYLEYFV-YENDDNISKAAEFLGRTKDAVINRLAKLRKRDSS 97
Query: 53 -----KTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVL 92
+ EDE+ K+ M+ D+ +L+ + ASV A KVL
Sbjct: 98 VSFIRRPWTKKEDEILKNNYIIMSNDQLAERLRRTKASVAARKVL 142
>sp|Q9C5X8|MOCOS_ARATH Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1
SV=1
Length = 819
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 39 FVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNK 97
F K + L D+ K AT+ ++++ P DF+ L F++L G +GA V N+ K
Sbjct: 234 FSKSKRWMVLIDAAKGCATLPPDLSEYPADFVVLS--FYKLFGYPTGLGALLVRNDAAK 290
>sp|Q926A7|Y1255_LISIN Uncharacterized protein Lin1255/Lin1742 OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=lin1255 PE=4 SV=1
Length = 226
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNP----GFVKD-----VVTLYLRDST 52
+A R I+K + DE+I KYF+ E +DIS G KD +V L RDS+
Sbjct: 39 KATRLGISKNSEWTEDEDIYLKYFV-YENDDDISKAAEFLGRTKDAVINRLVKLRKRDSS 97
Query: 53 -----KTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVL 92
+ EDE+ K M+ + +L+ + ASV KVL
Sbjct: 98 VSFIRRPWTEKEDEILKKNYIIMSNAQFAERLRRTKASVAGRKVL 142
>sp|Q00500|CCMF_RHOCB Cytochrome c-type biogenesis protein ccl1 OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=ccl1 PE=3
SV=1
Length = 653
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 24 YFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFM 70
Y + L +ED+ P F T+ +R K +AT+ E PV M
Sbjct: 528 YTITLVSVEDVPGPNFTAKTATMEVRQGGKLVATLHPEKRIYPVQAM 574
>sp|O13046|WDHD1_XENLA WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis
GN=wdhd1 PE=1 SV=1
Length = 1127
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 40 VKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSS 83
V V LY RDS K + T+ D+ PV+ + C L S
Sbjct: 206 VGKAVHLYDRDSLKNICTLSDDFITQPVNIVAWSPCGQYLVAGS 249
>sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana
GN=ABCG26 PE=2 SV=2
Length = 685
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 1 MEALRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVK-DVVTLYLRDSTKTLATIE 59
ME + Q A +R + E +D+ F+ LED P F+K + V +R+S + A +
Sbjct: 28 MEFMPQ--AYLRNQYSSEIDIDEEFVSTYPLEDAPLPIFLKFEDVEYKVRNSHASSANLV 85
Query: 60 DEMAKSPVDFMNLDK--CFHQLKGSSASVGANKVL 92
M V N D H LKG + S G ++L
Sbjct: 86 KTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEIL 120
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1
Length = 732
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 40 VKDVVTLYLRDSTKTLATIEDEMAKSPVDFM 70
V+DV+TL+LR+ K L T + E +K PV+F+
Sbjct: 304 VRDVMTLHLREMGKQLVT-DPEKSKDPVEFV 333
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 38 GFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNK 97
G VKD+V L D +E+ + V+F ++ + QL+ VG +K+L + K
Sbjct: 822 GVVKDIVDLLFFD---------EEVQTAAVEFSHMTQT--QLREQGVPVGIHKILRRLCK 870
Query: 98 ARE 100
ARE
Sbjct: 871 ARE 873
>sp|Q3JE55|PYRB_NITOC Aspartate carbamoyltransferase OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=pyrB PE=3 SV=1
Length = 324
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 41 KDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLD 73
K +V L+ +ST+TL+T E + D MNL+
Sbjct: 53 KTIVNLFFENSTRTLSTFELAAKRLSADVMNLN 85
>sp|Q39VA6|IF2_GEOMG Translation initiation factor IF-2 OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=infB PE=3 SV=1
Length = 884
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 2 EALRQQIAKMRQSFFDEEILDKYF-LQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIED 60
E ++IA RQ E L K+ + LEQL D G VKD+ + D ++ + D
Sbjct: 642 EKKAKEIASHRQQKLRETELAKHSKMSLEQLYDKIQKGEVKDLNAIVKADVQGSVEAVSD 701
Query: 61 EMAKSPVDFMNLD 73
+ K D + L+
Sbjct: 702 SLRKLSTDAVRLN 714
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,211,993
Number of Sequences: 539616
Number of extensions: 1346200
Number of successful extensions: 3911
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3891
Number of HSP's gapped (non-prelim): 32
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)