Query 048267
Match_columns 109
No_of_seqs 103 out of 527
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 9.7E-32 3.3E-36 190.0 9.9 107 2-108 4-110 (153)
2 1yvi_A Histidine-containing ph 100.0 2.2E-30 7.4E-35 181.7 10.4 107 2-108 4-111 (149)
3 2r25_A Phosphorelay intermedia 99.9 2.3E-26 8E-31 164.9 10.4 90 14-106 2-93 (167)
4 2a0b_A HPT domain; sensory tra 99.8 3.7E-20 1.2E-24 125.3 6.3 88 15-107 6-94 (125)
5 1y6d_A Phosphorelay protein LU 99.8 1.9E-20 6.6E-25 127.1 2.2 82 25-108 14-95 (120)
6 3myf_A Sensor protein; HPT, hi 99.7 2.5E-17 8.6E-22 111.6 9.7 87 16-107 1-87 (119)
7 3iqt_A Signal transduction his 99.7 2.2E-16 7.5E-21 107.7 8.4 84 19-107 13-96 (123)
8 2ooc_A Histidine phosphotransf 99.6 3.4E-16 1.2E-20 105.1 4.0 76 19-104 9-84 (113)
9 1sr2_A Putative sensor-like hi 99.6 4E-15 1.4E-19 100.5 5.6 71 35-107 28-98 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 4.9E-14 1.7E-18 92.4 7.7 66 40-107 3-79 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 1.4E-12 4.7E-17 90.0 8.0 65 41-107 3-78 (139)
12 1i5n_A Chemotaxis protein CHEA 99.3 1.5E-12 5.2E-17 90.6 6.4 65 41-107 6-81 (146)
13 2lch_A Protein OR38; structura 99.3 2.5E-12 8.4E-17 85.5 7.2 66 41-106 5-79 (113)
14 3kyj_A CHEA3, putative histidi 99.0 5.8E-10 2E-14 77.6 6.3 63 40-102 9-77 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 1.5E-08 5.1E-13 74.5 5.1 62 41-102 6-73 (225)
16 2cw9_A Translocase of inner mi 86.0 2.6 8.9E-05 29.7 6.6 82 5-105 22-104 (194)
17 2di0_A Activating signal coint 84.9 1 3.5E-05 27.5 3.5 42 17-58 9-50 (71)
18 1gp8_A Protein (scaffolding pr 81.8 1.9 6.4E-05 23.4 3.3 23 57-81 16-38 (40)
19 3bvo_A CO-chaperone protein HS 78.9 13 0.00044 26.5 8.1 41 38-80 151-191 (207)
20 3uo3_A J-type CO-chaperone JAC 74.0 20 0.00067 25.0 8.0 48 31-80 114-161 (181)
21 3hho_A CO-chaperone protein HS 68.4 26 0.00088 24.0 7.3 41 38-80 116-156 (174)
22 1fpo_A HSC20, chaperone protei 67.2 27 0.00093 23.9 7.7 41 38-80 112-152 (171)
23 3qk9_A Mitochondrial import in 63.0 3.1 0.00011 30.3 1.7 56 13-77 53-109 (222)
24 3ls0_A SLL1638 protein, PSBQ; 58.2 15 0.0005 24.8 4.3 29 48-78 32-61 (133)
25 3zsu_A TLL2057 protein, cyanoq 55.6 11 0.00037 25.4 3.2 29 48-78 30-58 (130)
26 3zsu_A TLL2057 protein, cyanoq 50.5 53 0.0018 21.9 6.9 63 19-83 29-93 (130)
27 2p1h_A APAF-1, apoptotic prote 48.8 26 0.00088 21.2 4.0 61 12-76 28-89 (94)
28 3do9_A UPF0302 protein BA_1542 40.9 33 0.0011 24.2 4.0 29 51-81 151-179 (188)
29 2f4m_B UV excision repair prot 40.5 45 0.0015 19.3 3.9 35 23-58 11-45 (61)
30 1ug3_A EIF4GI, eukaryotic prot 37.6 90 0.0031 23.3 6.3 49 2-50 8-57 (339)
31 3ls0_A SLL1638 protein, PSBQ; 37.6 89 0.0031 20.9 5.6 57 25-83 39-96 (133)
32 2gyq_A YCFI, putative structur 33.2 1.2E+02 0.004 20.8 6.0 44 21-64 27-71 (173)
33 1wgl_A TOLL-interacting protei 32.7 30 0.001 19.8 2.3 37 22-58 10-46 (59)
34 2wx3_A MRNA-decapping enzyme 1 28.9 17 0.00059 20.6 0.7 23 36-58 27-49 (51)
35 2hsb_A Hypothetical UPF0332 pr 26.2 1.2E+02 0.0041 18.7 4.9 28 43-72 4-31 (126)
36 2nsz_A Programmed cell death p 25.7 1.4E+02 0.0046 19.2 8.2 48 2-49 4-52 (129)
37 3f0n_A Mevalonate pyrophosphat 25.1 1.1E+02 0.0038 24.1 5.0 31 43-75 238-269 (414)
38 2f86_B Hypothetical protein K1 25.0 62 0.0021 21.1 3.1 27 49-77 12-38 (143)
39 4dra_E Centromere protein X; D 24.9 1.3E+02 0.0043 18.5 5.9 41 38-78 39-79 (84)
40 2vs0_A Virulence factor ESXA; 24.3 48 0.0016 19.4 2.2 21 67-87 6-26 (97)
41 3m50_P N.plumbaginifolia H+-tr 23.9 15 0.0005 18.8 -0.2 9 74-82 2-10 (31)
42 2qsf_A RAD4, DNA repair protei 23.6 47 0.0016 27.0 2.7 33 67-100 147-179 (533)
43 2dhy_A CUE domain-containing p 22.6 1.2E+02 0.004 17.8 3.7 35 24-58 21-55 (67)
44 1ylm_A Hypothetical protein BS 22.2 1.3E+02 0.0046 19.1 4.3 49 15-63 75-134 (144)
45 2kjg_A Archaeal protein SSO690 22.0 76 0.0026 20.1 2.8 34 20-53 3-37 (99)
46 3ygs_P Procaspase 9; apoptosis 21.9 58 0.002 20.0 2.3 71 3-75 9-89 (97)
47 2qsf_X RAD23, UV excision repa 21.6 96 0.0033 21.5 3.6 35 22-57 32-66 (171)
48 2rr7_A Dynein heavy chain 9; m 21.5 48 0.0016 22.2 2.0 69 23-103 70-140 (155)
49 2ion_A PDCD4, programmed cell 20.8 1.9E+02 0.0065 19.1 8.1 48 2-49 6-54 (152)
50 2asr_A Aspartate receptor; che 20.5 1.6E+02 0.0054 18.0 6.0 46 25-73 67-113 (142)
51 2wx4_A DCP1, decapping protein 20.4 36 0.0012 18.8 0.9 20 36-55 25-44 (46)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=99.97 E-value=9.7e-32 Score=189.98 Aligned_cols=107 Identities=40% Similarity=0.639 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhh
Q 048267 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKG 81 (109)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 81 (109)
.+|++++..|++|++++|+||++|.+|++|+++++|+|+.++|..|++++++.+..|+.+++++++|+.+++++||+|||
T Consensus 4 ~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 83 (153)
T 3us6_A 4 GQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKG 83 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999887799999999999999
Q ss_pred hhhhhChHHHHHHHHHHHHHHhccCcC
Q 048267 82 SSASVGANKVLNEVNKAREHCKEGNLE 108 (109)
Q Consensus 82 SsasiGA~~l~~~c~~lE~~~~~~~~~ 108 (109)
||+||||.+|+.+|.++|.+|+.++.+
T Consensus 84 ss~~lGa~~l~~~c~~lE~~~~~~~~~ 110 (153)
T 3us6_A 84 SSASIGAQRVKNSCVAFRNFCEEQNID 110 (153)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999865
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.97 E-value=2.2e-30 Score=181.67 Aligned_cols=107 Identities=38% Similarity=0.625 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHHhhhccCC-chhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhh
Q 048267 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDISN-PGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLK 80 (109)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~-~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 80 (109)
++|+.|++.|++|++++|+||++|.+|++|+++++ |+|+.+||.+|++++++.+..|+.|++.+++|+.++++++|+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LK 83 (149)
T 1yvi_A 4 AALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLK 83 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 58999999999999999999999999999988888 99999999999999999999999999987568999999999999
Q ss_pred hhhhhhChHHHHHHHHHHHHHHhccCcC
Q 048267 81 GSSASVGANKVLNEVNKAREHCKEGNLE 108 (109)
Q Consensus 81 GSsasiGA~~l~~~c~~lE~~~~~~~~~ 108 (109)
|||+||||.+|+.+|.++|.+|+.++.+
T Consensus 84 Gssa~lGa~~l~~~c~~lE~~~~~~~~~ 111 (149)
T 1yvi_A 84 GSSASVGAQKVKFTCMQFRQFCQDKSRD 111 (149)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999864
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.94 E-value=2.3e-26 Score=164.87 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=86.6
Q ss_pred cccchhhhHH-HHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHh-cCCcCHHHHHHHhHHhhhhhhhhChHHH
Q 048267 14 SFFDEEILDK-YFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMA-KSPVDFMNLDKCFHQLKGSSASVGANKV 91 (109)
Q Consensus 14 ~~~~~~~lD~-~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~-~~~~D~~~l~~~aH~LKGSsasiGA~~l 91 (109)
||.+.|+||+ +|.+|++|++++ |+|+.+||.+|+++++++|..|+.|++ .+ |+.++++++|+|||||+||||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5778899998 699999999887 999999999999999999999999999 77 999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 048267 92 LNEVNKAREHCKEGN 106 (109)
Q Consensus 92 ~~~c~~lE~~~~~~~ 106 (109)
+.+|.+||.+|+.++
T Consensus 79 ~~~C~~le~~~r~~n 93 (167)
T 2r25_A 79 AWVCERIQNLGRKME 93 (167)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999999
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.81 E-value=3.7e-20 Score=125.32 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=78.7
Q ss_pred ccchhhhHHH-HHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHH
Q 048267 15 FFDEEILDKY-FLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLN 93 (109)
Q Consensus 15 ~~~~~~lD~~-~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~ 93 (109)
+-..++||+. +.+|.++. |++++.+++..|++++++.+..|..++..+ |++.+.+.+|+|||||+|+|+.+|+.
T Consensus 6 ~~~~~~lD~~~l~~l~~~~---g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLELV---GPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp CHHHHHSCHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCCHHHHHHHHHHh---CHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456788875 66666654 789999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHhccCc
Q 048267 94 EVNKAREHCKEGNL 107 (109)
Q Consensus 94 ~c~~lE~~~~~~~~ 107 (109)
+|..+|..++.++.
T Consensus 81 ~~~~lE~~~~~~~~ 94 (125)
T 2a0b_A 81 LGQQIQSPDLPAWE 94 (125)
T ss_dssp HHHHHTCTTSTTHH
T ss_pred HHHHHHHHHHcCCH
Confidence 99999999987754
No 5
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.79 E-value=1.9e-20 Score=127.05 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=74.9
Q ss_pred HHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHHHhc
Q 048267 25 FLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKE 104 (109)
Q Consensus 25 ~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~~~~ 104 (109)
|.+|.+|+++.||+++.+++..|++++++.|..|+.+.+.+ |...+.+.+|+|||||+++||.+|+.+|.++|..+|.
T Consensus 14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 45666777777899999999999999999999999998888 8899999999999999999999999999999999999
Q ss_pred cCcC
Q 048267 105 GNLE 108 (109)
Q Consensus 105 ~~~~ 108 (109)
|+..
T Consensus 92 g~~~ 95 (120)
T 1y6d_A 92 NQLQ 95 (120)
T ss_dssp HHHC
T ss_pred CChh
Confidence 8654
No 6
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.73 E-value=2.5e-17 Score=111.56 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=76.5
Q ss_pred cchhhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHHHH
Q 048267 16 FDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEV 95 (109)
Q Consensus 16 ~~~~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c 95 (109)
||..++|++ .+.++. .|++++..+++..|+++.++.+..|+.+++.+ |++++.+.+|+|||||+++|+++|..+|
T Consensus 1 ~~~~~~D~~--~~l~~~-~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQA-NHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccCHH--HHHHHh-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 456677875 333332 35789999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhccCc
Q 048267 96 NKAREHCKEGNL 107 (109)
Q Consensus 96 ~~lE~~~~~~~~ 107 (109)
..+|.++|.++.
T Consensus 76 ~~LE~~~r~~~~ 87 (119)
T 3myf_A 76 QEIESALKRQTP 87 (119)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 999999999863
No 7
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.67 E-value=2.2e-16 Score=107.67 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHH
Q 048267 19 EILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKA 98 (109)
Q Consensus 19 ~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~l 98 (109)
+.+|++ .+.++. .+++++..+++.+|+++.++.+..|+.++..+ |++++.+.+|+|||||+++|+++|..+|..|
T Consensus 13 ~~~D~~--~~l~~a-~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~L 87 (123)
T 3iqt_A 13 ATLDWQ--LALRQA-AGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQLI 87 (123)
T ss_dssp GTCCHH--HHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CccCHH--HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 567765 444443 45799999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHhccCc
Q 048267 99 REHCKEGNL 107 (109)
Q Consensus 99 E~~~~~~~~ 107 (109)
|.++|.|+.
T Consensus 88 E~~~r~g~~ 96 (123)
T 3iqt_A 88 EQQLRSGTK 96 (123)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHcCCC
Confidence 999999864
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.61 E-value=3.4e-16 Score=105.10 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHH
Q 048267 19 EILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKA 98 (109)
Q Consensus 19 ~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~l 98 (109)
+.+|.+ .|..+ ..++|+|+.+|+.+|++++++.+..|..+ .. |+ ++++|+|||||++|||.+++.+|.++
T Consensus 9 ~~iD~~--~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~l 78 (113)
T 2ooc_A 9 GAVDFA--YLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCERC 78 (113)
T ss_dssp CCSCHH--HHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcCHH--HHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 445543 44444 34578999999999999999999999988 33 65 79999999999999999999999999
Q ss_pred HHHHhc
Q 048267 99 REHCKE 104 (109)
Q Consensus 99 E~~~~~ 104 (109)
|..++.
T Consensus 79 E~~~~~ 84 (113)
T 2ooc_A 79 EAGQES 84 (113)
T ss_dssp HTTSSC
T ss_pred HHHhhh
Confidence 998865
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.56 E-value=4e-15 Score=100.51 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHHHhccCc
Q 048267 35 SNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHCKEGNL 107 (109)
Q Consensus 35 ~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~~~~~~~ 107 (109)
+.+..-.+++.+|++..++.+..|..++..+ |+..+++.+|+||||++++|+..+..+|.++|..++.++.
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~ 98 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDV 98 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCH
Confidence 3456778899999999999999999999999 9999999999999999999999999999999999998864
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.51 E-value=4.9e-14 Score=92.44 Aligned_cols=66 Identities=11% Similarity=0.261 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh--------cCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHHH---hccCc
Q 048267 40 VKDVVTLYLRDSTKTLATIEDEMA--------KSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHC---KEGNL 107 (109)
Q Consensus 40 ~~~li~~F~~d~~~~l~~L~~al~--------~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~~---~~~~~ 107 (109)
+.+++..|++++++.+..|+.++. .. ++..+.+.+|+|||||+++|+..+..+|..+|..+ |.++.
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~ 79 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999995 34 67899999999999999999999999999999876 56553
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.38 E-value=1.4e-12 Score=90.01 Aligned_cols=65 Identities=11% Similarity=0.288 Sum_probs=58.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh--------cCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHHH---hccCc
Q 048267 41 KDVVTLYLRDSTKTLATIEDEMA--------KSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREHC---KEGNL 107 (109)
Q Consensus 41 ~~li~~F~~d~~~~l~~L~~al~--------~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~~---~~~~~ 107 (109)
.+++..|++++++.+..|..++. .. ++..+.+.+|+|||||+++|+..++.+|..+|... |.++.
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~ 78 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEI 78 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 47899999999999999999994 34 78999999999999999999999999999999865 66654
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.34 E-value=1.5e-12 Score=90.55 Aligned_cols=65 Identities=14% Similarity=0.338 Sum_probs=57.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh--------cCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHH---HhccCc
Q 048267 41 KDVVTLYLRDSTKTLATIEDEMA--------KSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREH---CKEGNL 107 (109)
Q Consensus 41 ~~li~~F~~d~~~~l~~L~~al~--------~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~---~~~~~~ 107 (109)
.+++..|++++++.|..|+.++. .. ++..+.+.+|+|||||+++|+..++.+|..+|.. .|.++.
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~ 81 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEM 81 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 37899999999999999999993 33 5689999999999999999999999999999987 666654
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.34 E-value=2.5e-12 Score=85.51 Aligned_cols=66 Identities=9% Similarity=0.236 Sum_probs=55.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc---CC---cCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHH---HhccC
Q 048267 41 KDVVTLYLRDSTKTLATIEDEMAK---SP---VDFMNLDKCFHQLKGSSASVGANKVLNEVNKAREH---CKEGN 106 (109)
Q Consensus 41 ~~li~~F~~d~~~~l~~L~~al~~---~~---~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~---~~~~~ 106 (109)
.+++..|++++++.+..|..++.. .+ -++..+.+.+|+|||||+++|+..++.+|..+|.. .|.+.
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~ 79 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSE 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999999842 11 14568999999999999999999999999999964 45554
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=99.01 E-value=5.8e-10 Score=77.60 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh---cCCcC---HHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHHH
Q 048267 40 VKDVVTLYLRDSTKTLATIEDEMA---KSPVD---FMNLDKCFHQLKGSSASVGANKVLNEVNKAREHC 102 (109)
Q Consensus 40 ~~~li~~F~~d~~~~l~~L~~al~---~~~~D---~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~~ 102 (109)
..+++..|++++++.|..|...+. +++.| ...+.|.+|+|||||+.+|+..+..+|..+|...
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll 77 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLI 77 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHH
Confidence 568999999999999999999874 22223 4589999999999999999999999999999854
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.70 E-value=1.5e-08 Score=74.50 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=53.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc---CCcC---HHHHHHHhHHhhhhhhhhChHHHHHHHHHHHHHH
Q 048267 41 KDVVTLYLRDSTKTLATIEDEMAK---SPVD---FMNLDKCFHQLKGSSASVGANKVLNEVNKAREHC 102 (109)
Q Consensus 41 ~~li~~F~~d~~~~l~~L~~al~~---~~~D---~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~~~ 102 (109)
.+++..|++++.++|..|...+-. ++.| ...+.|.+|+|||||+.+|+..++.+|..+|..-
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l 73 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLL 73 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 468899999999999999998843 3224 4578899999999999999999999999999764
No 16
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=85.99 E-value=2.6 Score=29.66 Aligned_cols=82 Identities=7% Similarity=0.195 Sum_probs=57.0
Q ss_pred HHHHHHHHhcccchhhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHH-HHHHHHHHhcCCcCHHHHHHHhHHhhhhh
Q 048267 5 RQQIAKMRQSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKT-LATIEDEMAKSPVDFMNLDKCFHQLKGSS 83 (109)
Q Consensus 5 ~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~-l~~L~~al~~~~~D~~~l~~~aH~LKGSs 83 (109)
+..+.+.+.++|...-....+.+++++.+ +|= ...|++.+... +..|..|...+ |.+.|+.++.
T Consensus 22 ~~~~~~~~~~~f~~s~~~~~l~~i~~~dp----~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t------ 86 (194)
T 2cw9_A 22 TDKVTDLLGGLFSKTEMSEVLTEILRVDP----AFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWCY------ 86 (194)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHCT----TCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC------
T ss_pred hhhhhhhhccccCCCHHHHHHHHHHhhCC----CCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcC------
Confidence 34555566777777766666778887754 443 36889999998 79999999999 9999998753
Q ss_pred hhhChHHHHHHHHHHHHHHhcc
Q 048267 84 ASVGANKVLNEVNKAREHCKEG 105 (109)
Q Consensus 84 asiGA~~l~~~c~~lE~~~~~~ 105 (109)
=.-+..++.++......|
T Consensus 87 ----~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 87 ----EATYSQLAHPIQQAKALG 104 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHCC
Confidence 233445555555554444
No 17
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=84.94 E-value=1 Score=27.45 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=36.7
Q ss_pred chhhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHH
Q 048267 17 DEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATI 58 (109)
Q Consensus 17 ~~~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L 58 (109)
+...++..+.+++.|.++-+..|+..++..|=.++++.+..|
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~L 50 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNI 50 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 445577779999999999999999999999999999998766
No 18
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=81.76 E-value=1.9 Score=23.38 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHHhcCCcCHHHHHHHhHHhhh
Q 048267 57 TIEDEMAKSPVDFMNLDKCFHQLKG 81 (109)
Q Consensus 57 ~L~~al~~~~~D~~~l~~~aH~LKG 81 (109)
+|.-|...+ ||++++.+=|+||+
T Consensus 16 qiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 16 QMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHh
Confidence 346677889 99999999999986
No 19
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=78.94 E-value=13 Score=26.46 Aligned_cols=41 Identities=7% Similarity=0.263 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhh
Q 048267 38 GFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLK 80 (109)
Q Consensus 38 ~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 80 (109)
+-+.++-..+-....+.+.+|..++..+ |++.+......||
T Consensus 151 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 151 AAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 3466666667777777778888999988 9998888877776
No 20
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=73.96 E-value=20 Score=24.96 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=35.7
Q ss_pred hhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhh
Q 048267 31 LEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLK 80 (109)
Q Consensus 31 L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 80 (109)
|.+..+.+-+.++....-+........|..+++.+ ||+..+..+..||
T Consensus 114 leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 161 (181)
T 3uo3_A 114 LSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVELK 161 (181)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 33333444466777777777788888999999998 9999888887776
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=68.36 E-value=26 Score=24.03 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhh
Q 048267 38 GFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLK 80 (109)
Q Consensus 38 ~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 80 (109)
.-+..+....-......+..|..+++.+ ||......+..||
T Consensus 116 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL~ 156 (174)
T 3hho_A 116 AALVAFDTKVTAMQRHYLAQLQGQLAQS--EWLAAADQIRKLK 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 4466777777777888889999999998 9999888888876
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=67.17 E-value=27 Score=23.87 Aligned_cols=41 Identities=2% Similarity=0.062 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhh
Q 048267 38 GFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLK 80 (109)
Q Consensus 38 ~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LK 80 (109)
+-+..+-...-......+..|..+++.+ ||+.....+..||
T Consensus 112 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~A~~~~~kl~ 152 (171)
T 1fpo_A 112 ARLESFIKRVKKMFDTRHQLMVEQLDNE--TWDAAADTCRKLR 152 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC--cHHHHHHHHHHHH
Confidence 3455555555555556677788888888 9988888877766
No 23
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=63.01 E-value=3.1 Score=30.27 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=32.5
Q ss_pred hcccchhhhHHHHHHHHhhhccCCchhHHHHHHHHHHhHHHH-HHHHHHHHhcCCcCHHHHHHHhH
Q 048267 13 QSFFDEEILDKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKT-LATIEDEMAKSPVDFMNLDKCFH 77 (109)
Q Consensus 13 ~~~~~~~~lD~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~-l~~L~~al~~~~~D~~~l~~~aH 77 (109)
.++|.+.-+...+.+++++. |.|- ...|++.+... +..|-.|...+ |.+.|+.+++
T Consensus 53 ~~~f~~te~a~~l~~Ik~~D----PsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~lls 109 (222)
T 3qk9_A 53 GGFFAETESSRVYSQFKLMD----PTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFS 109 (222)
T ss_dssp -------CCHHHHTTCC---------CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBC
T ss_pred ccccCCCHHHHHHHHHHHhC----CCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcC
Confidence 33444444444455555543 4444 36788888887 56799999999 9999998864
No 24
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=58.17 E-value=15 Score=24.82 Aligned_cols=29 Identities=7% Similarity=0.286 Sum_probs=25.0
Q ss_pred HHhHHHHHHH-HHHHHhcCCcCHHHHHHHhHH
Q 048267 48 LRDSTKTLAT-IEDEMAKSPVDFMNLDKCFHQ 78 (109)
Q Consensus 48 ~~d~~~~l~~-L~~al~~~~~D~~~l~~~aH~ 78 (109)
+.++.+++++ |...++.+ ||..++...|-
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhG 61 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHG 61 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhc
Confidence 3567888999 99999999 99999998874
No 25
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=55.63 E-value=11 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.341 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHHHHhcCCcCHHHHHHHhHH
Q 048267 48 LRDSTKTLATIEDEMAKSPVDFMNLDKCFHQ 78 (109)
Q Consensus 48 ~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~ 78 (109)
+.++.+++++|...++.+ ||..++...|-
T Consensus 30 i~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhG 58 (130)
T 3zsu_A 30 IEKNAERFADLEVSVAKG--DWQEARNIMRG 58 (130)
T ss_dssp HHHHHTTHHHHHHHHHTT--CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhc--chHHHHHHHhc
Confidence 345778899999999999 99999988774
No 26
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=50.54 E-value=53 Score=21.92 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=49.1
Q ss_pred hhhHHH--HHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhh
Q 048267 19 EILDKY--FLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSS 83 (109)
Q Consensus 19 ~~lD~~--~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSs 83 (109)
++.+.. +.+|..+-+..+..+++.+|..=+.+..+.+.-|...+-.. |=.+.++++-.|++.=
T Consensus 29 ~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~--dqk~A~~lak~l~~~L 93 (130)
T 3zsu_A 29 DIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAK--DQPTPTALTRALTDDF 93 (130)
T ss_dssp HHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGG--GSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHh--hHHHHHHHHHHHHHHH
Confidence 444443 78888888888899999999999999999988888887655 7778888877776654
No 27
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=48.82 E-value=26 Score=21.16 Aligned_cols=61 Identities=5% Similarity=0.130 Sum_probs=38.1
Q ss_pred HhcccchhhhHHH-HHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHh
Q 048267 12 RQSFFDEEILDKY-FLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCF 76 (109)
Q Consensus 12 ~~~~~~~~~lD~~-~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~a 76 (109)
+..++..|+|... ...++.- .+..+-...|++.-..-++.....+..++... ++..+....
T Consensus 28 ld~L~~~~vlt~~~~e~I~~~--~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~L 89 (94)
T 2p1h_A 28 MDHMISDGFLTISEEEKVRNE--PTQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAALL 89 (94)
T ss_dssp HHHHHHHTSSCHHHHHHHHTS--SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHcC--CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHHH
Confidence 3334444555543 4444442 33457777888877777788888888888776 666655543
No 28
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=40.88 E-value=33 Score=24.22 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHhHHhhh
Q 048267 51 STKTLATIEDEMAKSPVDFMNLDKCFHQLKG 81 (109)
Q Consensus 51 ~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 81 (109)
-.++..+|..|++.+ |-+.+.+++..||-
T Consensus 151 ~~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 151 RERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 356789999999999 99999999998874
No 29
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=40.51 E-value=45 Score=19.31 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=23.5
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHH
Q 048267 23 KYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATI 58 (109)
Q Consensus 23 ~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L 58 (109)
++|.+|+++-.. +|+.+..++...-..-|+.+..|
T Consensus 11 Pqf~~lR~~vq~-NP~~L~~lLqql~~~nP~l~~~I 45 (61)
T 2f4m_B 11 PQFQQMRQIIQQ-NPSLLPALLQQIGRENPQLLQQI 45 (61)
T ss_dssp HHHHHHHHHHHH-CGGGHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHH-CHHHHHHHHHHHHhHCHHHHHHH
Confidence 468899988554 78888777776555555554433
No 30
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.63 E-value=90 Score=23.25 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHHhhhcc-CCchhHHHHHHHHHHh
Q 048267 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDI-SNPGFVKDVVTLYLRD 50 (109)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~-~~~~f~~~li~~F~~d 50 (109)
+.++.++..+++-.+..|-+++...-+++|..+ --++||..+|...++-
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCC
Confidence 346677777888878888888878888888643 2356666666666664
No 31
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=37.62 E-value=89 Score=20.90 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=41.8
Q ss_pred HHH-HHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhh
Q 048267 25 FLQ-LEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQLKGSS 83 (109)
Q Consensus 25 ~~~-L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSs 83 (109)
+.+ |..+-+..+..+++.+|..=+.+..+.+.-|...+-.. |=.+.+.++-.|++.=
T Consensus 39 l~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~--dqk~A~~lak~l~~~L 96 (133)
T 3ls0_A 39 MEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPK--DQDKAKTLAKEVFGHL 96 (133)
T ss_dssp HHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChh--hhHHHHHHHHHHHHHH
Confidence 677 77777777888888888888888888888887777544 6666666666665543
No 32
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=33.17 E-value=1.2e+02 Score=20.83 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=31.7
Q ss_pred hHHH-HHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhc
Q 048267 21 LDKY-FLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAK 64 (109)
Q Consensus 21 lD~~-~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~ 64 (109)
.+.| ...|.++...-...-++..+..+++++.+++..|+..+..
T Consensus 27 aE~q~~~aL~~~~~~a~~p~Lk~~l~~H~~eT~~qi~rLe~i~~~ 71 (173)
T 2gyq_A 27 AEQQITKALPKMIEQATNRDLSQGLTSHLEETQKQIERLDQVFKK 71 (173)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5667777542233456688999999999999999988864
No 33
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.71 E-value=30 Score=19.79 Aligned_cols=37 Identities=3% Similarity=0.147 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHH
Q 048267 22 DKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATI 58 (109)
Q Consensus 22 D~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L 58 (109)
++.+..|++|.+.-+++.++.++...-.+....|..|
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~L 46 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSL 46 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3457888888877777777777666656666555444
No 34
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=28.93 E-value=17 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred CchhHHHHHHHHHHhHHHHHHHH
Q 048267 36 NPGFVKDVVTLYLRDSTKTLATI 58 (109)
Q Consensus 36 ~~~f~~~li~~F~~d~~~~l~~L 58 (109)
+++|+..+-+.|+....+.++++
T Consensus 27 D~~Fl~~IHeAYl~sl~~~~~n~ 49 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTKNKDNH 49 (51)
T ss_dssp CHHHHHHHHHHHHHTTC------
T ss_pred CHHHHHHHHHHHHHHHHHHHhcc
Confidence 57999999999999888777654
No 35
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=26.24 E-value=1.2e+02 Score=18.71 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcCHHHH
Q 048267 43 VVTLYLRDSTKTLATIEDEMAKSPVDFMNL 72 (109)
Q Consensus 43 li~~F~~d~~~~l~~L~~al~~~~~D~~~l 72 (109)
.+..+++.+.+.|..-+..+..+ +|...
T Consensus 4 ~~~~~l~~A~~~L~~A~~~~~~g--~y~~a 31 (126)
T 2hsb_A 4 ELELRIRKAEKLVQDAKKEFEMG--LYERC 31 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CHHHH
Confidence 34556666777777777777776 66543
No 36
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.74 E-value=1.4e+02 Score=19.17 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHHhhhcc-CCchhHHHHHHHHHH
Q 048267 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDI-SNPGFVKDVVTLYLR 49 (109)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~-~~~~f~~~li~~F~~ 49 (109)
+.++.++..+++--+..|-+++...-+++|.-+ --++||.++|..-++
T Consensus 4 eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE 52 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE 52 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHc
Confidence 457778888888888888888888888888622 123455555555444
No 37
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=25.15 E-value=1.1e+02 Score=24.09 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=25.0
Q ss_pred HHHHHHHh-HHHHHHHHHHHHhcCCcCHHHHHHH
Q 048267 43 VVTLYLRD-STKTLATIEDEMAKSPVDFMNLDKC 75 (109)
Q Consensus 43 li~~F~~d-~~~~l~~L~~al~~~~~D~~~l~~~ 75 (109)
..+.++.+ ++..+..|..|+.++ ||+.+.++
T Consensus 238 ~~~~~v~~~~~~~~~~l~~AL~~g--D~~~~g~l 269 (414)
T 3f0n_A 238 LLKFRAESVVPERMKEMTRCIQEQ--DFQGFAQL 269 (414)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 34556666 789999999999999 99987654
No 38
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=24.95 E-value=62 Score=21.08 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHhcCCcCHHHHHHHhH
Q 048267 49 RDSTKTLATIEDEMAKSPVDFMNLDKCFH 77 (109)
Q Consensus 49 ~d~~~~l~~L~~al~~~~~D~~~l~~~aH 77 (109)
++..+.+.++..|+..+ |++.+..+.|
T Consensus 12 ~eI~~~~~~~~~Ai~~g--D~~~~~~l~~ 38 (143)
T 2f86_B 12 QDIVRVTQTLLDAISCK--DFETYTRLCD 38 (143)
T ss_dssp HHHHHHHHHHHHHHHHT--CHHHHHHHEE
T ss_pred HHHHHHHHHHHHHHHcc--CHHHHHHhcC
Confidence 44567788889999999 9999997754
No 39
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=24.85 E-value=1.3e+02 Score=18.51 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHHHHhHH
Q 048267 38 GFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLDKCFHQ 78 (109)
Q Consensus 38 ~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~~~aH~ 78 (109)
..+.+.++.|+.++-.+-...+.+-..+.++.+.+++.+=+
T Consensus 39 ~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 39 QLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 57889999999998877766655544455777777776544
No 40
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.33 E-value=48 Score=19.38 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=16.5
Q ss_pred cCHHHHHHHhHHhhhhhhhhC
Q 048267 67 VDFMNLDKCFHQLKGSSASVG 87 (109)
Q Consensus 67 ~D~~~l~~~aH~LKGSsasiG 87 (109)
||+++++..|-.+++.+..|-
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~ 26 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIR 26 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888876653
No 41
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=23.90 E-value=15 Score=18.78 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=6.2
Q ss_pred HHhHHhhhh
Q 048267 74 KCFHQLKGS 82 (109)
Q Consensus 74 ~~aH~LKGS 82 (109)
+-.|+|||-
T Consensus 2 rElhTLkgh 10 (31)
T 3m50_P 2 RELHTLKGH 10 (31)
T ss_dssp HHHHCHHHH
T ss_pred chhhHHHHH
Confidence 456888874
No 42
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=23.61 E-value=47 Score=27.04 Aligned_cols=33 Identities=3% Similarity=0.104 Sum_probs=29.3
Q ss_pred cCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHH
Q 048267 67 VDFMNLDKCFHQLKGSSASVGANKVLNEVNKARE 100 (109)
Q Consensus 67 ~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~ 100 (109)
++...+..++.+.+||. -+||+-+..+|+.+-.
T Consensus 147 ~~~~~f~~~~~~~~Gs~-d~~AqlF~aLlRalG~ 179 (533)
T 2qsf_A 147 LKRSDFLRAVSKGHGDP-DISVQGFVAMLRACNV 179 (533)
T ss_dssp CCHHHHHHHHHHTEECH-HHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHhcCCCh-hHHHHHHHHHHHHCCC
Confidence 46789999999999988 9999999999998743
No 43
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.64 E-value=1.2e+02 Score=17.77 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=23.4
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHH
Q 048267 24 YFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATI 58 (109)
Q Consensus 24 ~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L 58 (109)
.+.+|++|.+.-+++.++.++..--.+....|..|
T Consensus 21 ~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 21 AMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 36788888877777777666666555555555544
No 44
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=22.16 E-value=1.3e+02 Score=19.15 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=32.3
Q ss_pred ccchhhhHHH----HHHHHhhhc-------cCCchhHHHHHHHHHHhHHHHHHHHHHHHh
Q 048267 15 FFDEEILDKY----FLQLEQLED-------ISNPGFVKDVVTLYLRDSTKTLATIEDEMA 63 (109)
Q Consensus 15 ~~~~~~lD~~----~~~L~~L~~-------~~~~~f~~~li~~F~~d~~~~l~~L~~al~ 63 (109)
+.+.|+|+.. |..+..+++ +-+++.+-+++..++.+-.+.+..+...+.
T Consensus 75 L~~~gvi~~~~~~~~~~m~g~RN~lvH~Y~~id~~~v~~~i~~~l~~l~~~~~~i~~~l~ 134 (144)
T 1ylm_A 75 LVDEKVVTEKEGDELKKLIAYRKTLVQQYLLADSGELYRLIKAHQTALQDFPKRIRSYLE 134 (144)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTHHHHHTCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHHHHHHHHHHhHHhcCccccCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456777662 556555553 446677777777777777777777776664
No 45
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=21.95 E-value=76 Score=20.05 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=22.8
Q ss_pred hhHHH-HHHHHhhhccCCchhHHHHHHHHHHhHHH
Q 048267 20 ILDKY-FLQLEQLEDISNPGFVKDVVTLYLRDSTK 53 (109)
Q Consensus 20 ~lD~~-~~~L~~L~~~~~~~f~~~li~~F~~d~~~ 53 (109)
+||.. |.+|+++.+--+.+.+..+++..-.+..+
T Consensus 3 vLdqeEFveLrkfKgkvd~~~v~~IL~eiE~~~rk 37 (99)
T 2kjg_A 3 ILEDPEFVKLRQFKGKVNFNLVMQILDEIELDLRG 37 (99)
T ss_dssp SCSCHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 56664 89999998766666666666665555554
No 46
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.94 E-value=58 Score=19.97 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccc---------chhhhHHH-HHHHHhhhccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHH
Q 048267 3 ALRQQIAKMRQSFF---------DEEILDKY-FLQLEQLEDISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNL 72 (109)
Q Consensus 3 ~~~~~~~~~~~~~~---------~~~~lD~~-~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l 72 (109)
.|+.....+++.+. ..|+|... ...++.....+..+-..+|++.-..-++..+..+..++..- ++..+
T Consensus 9 ~L~~~r~~Lv~~l~~~~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et--~~~~L 86 (97)
T 3ygs_P 9 LLRRCRLRLVEELQVDQLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDT--GQDML 86 (97)
T ss_dssp HHHHTHHHHHHHCCCTTTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTT--TCHHH
T ss_pred HHHHhHHHHHHHCcHHHHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHc--CcHHH
Confidence 34444455555443 33444443 44444421123456677777777777777788888888763 44444
Q ss_pred HHH
Q 048267 73 DKC 75 (109)
Q Consensus 73 ~~~ 75 (109)
.+.
T Consensus 87 a~l 89 (97)
T 3ygs_P 87 ASF 89 (97)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 47
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=21.64 E-value=96 Score=21.53 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhccCCchhHHHHHHHHHHhHHHHHHH
Q 048267 22 DKYFLQLEQLEDISNPGFVKDVVTLYLRDSTKTLAT 57 (109)
Q Consensus 22 D~~~~~L~~L~~~~~~~f~~~li~~F~~d~~~~l~~ 57 (109)
+++|.+|+++-.. +|+.+..|+...-..-|+++..
T Consensus 32 ~Pqf~qlRq~vqq-NPqlL~~lLqqig~~NPqL~ql 66 (171)
T 2qsf_X 32 VEDLLSLRQVVSG-NPEALAPLLENISARYPQLREH 66 (171)
T ss_dssp HHHHHHHHHHHHT-CGGGHHHHHHHHHHHCTTHHHH
T ss_pred CHHHHHHHHHHHH-CHHHHHHHHHHHHhhCHHHHHH
Confidence 3468888887544 7877777766544444444433
No 48
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=21.51 E-value=48 Score=22.18 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=45.2
Q ss_pred HHHHHHHhhhccCCchhHHHHHHHHHHh--HHHHHHHHHHHHhcCCcCHHHHHHHhHHhhhhhhhhChHHHHHHHHHHHH
Q 048267 23 KYFLQLEQLEDISNPGFVKDVVTLYLRD--STKTLATIEDEMAKSPVDFMNLDKCFHQLKGSSASVGANKVLNEVNKARE 100 (109)
Q Consensus 23 ~~~~~L~~L~~~~~~~f~~~li~~F~~d--~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGSsasiGA~~l~~~c~~lE~ 100 (109)
..|...+.+.. +++|+..|+. |=.| .++.+..|+..+.....+++.+++. |..|..|..++..+..
T Consensus 70 ~~W~~~k~~l~--~~~Fl~~L~~-fdkd~I~~~~~~~l~~yl~~p~f~~e~v~~~---------S~Aa~~Lc~WV~A~~~ 137 (155)
T 2rr7_A 70 DYWEASKKMLM--EFDFLDSLRK-FDKDHIPPEVIVKIRPFAQDPEFQPKVIEKQ---------SVACAGLCSWVIALEK 137 (155)
T ss_dssp CHHHHHHHHHS--CSSHHHHHHH-SCGGGCCHHHHTTSTTTSSCTTSSHHHHHHH---------CTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHhc--hHHHHHHHHh-cCcccChHHHHHHHHHHhcCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 45777777764 4589988775 5222 4567777888887764456666533 4456677777777776
Q ss_pred HHh
Q 048267 101 HCK 103 (109)
Q Consensus 101 ~~~ 103 (109)
+.+
T Consensus 138 y~~ 140 (155)
T 2rr7_A 138 YDK 140 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 49
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.82 E-value=1.9e+02 Score=19.12 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHHhhhcc-CCchhHHHHHHHHHH
Q 048267 2 EALRQQIAKMRQSFFDEEILDKYFLQLEQLEDI-SNPGFVKDVVTLYLR 49 (109)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~-~~~~f~~~li~~F~~ 49 (109)
+.++.++..+++--+..|-+++...-+++|.-+ --++||.++|..=++
T Consensus 6 eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE 54 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLE 54 (152)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 456778888888888888888888888888632 124455555555554
No 50
>2asr_A Aspartate receptor; chemotaxis; 2.30A {Escherichia coli} SCOP: a.24.2.1
Probab=20.54 E-value=1.6e+02 Score=18.02 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=34.0
Q ss_pred HHHHHhhh-ccCCchhHHHHHHHHHHhHHHHHHHHHHHHhcCCcCHHHHH
Q 048267 25 FLQLEQLE-DISNPGFVKDVVTLYLRDSTKTLATIEDEMAKSPVDFMNLD 73 (109)
Q Consensus 25 ~~~L~~L~-~~~~~~f~~~li~~F~~d~~~~l~~L~~al~~~~~D~~~l~ 73 (109)
|.....+. .+.++..+.+|...|-.-.. -|..+..++..+ |+..+.
T Consensus 67 ~~~y~~~~~~~~~~~l~~~l~~~y~~~~~-~l~~~~~~l~~~--~~~~~~ 113 (142)
T 2asr_A 67 YKKFKSMAPLPEMVATSRNIDEKYKNYYT-ALTELIDYLDYG--NTGAYF 113 (142)
T ss_dssp HHHHHHSCCCGGGHHHHHHHHHHHHHHHH-HHHHHHHHHTTT--CHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHCC--CHHHHH
Confidence 66666654 23456788888888876554 788999999999 988875
No 51
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=20.36 E-value=36 Score=18.84 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=12.8
Q ss_pred CchhHHHHHHHHHHhHHHHH
Q 048267 36 NPGFVKDVVTLYLRDSTKTL 55 (109)
Q Consensus 36 ~~~f~~~li~~F~~d~~~~l 55 (109)
+++|+..+-+.|+....+.+
T Consensus 25 D~~Fl~~iHeAYl~sl~~~l 44 (46)
T 2wx4_A 25 DKEFANKLHKAYLNGCSNLL 44 (46)
T ss_dssp CTTHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 56999999999998877665
Done!