BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048268
         (244 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54DU5|Y2028_DICDI von Willebrand factor A domain-containing protein DDB_G0292028
           OS=Dictyostelium discoideum GN=DDB_G0292028 PE=4 SV=1
          Length = 932

 Score = 32.7 bits (73), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 4   WGQLSKILRNSF---PLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPDY 60
           WG LS ++++     PL + ER  I   + K+P   +  V+LSG   + + ++  +D D+
Sbjct: 525 WGVLSNVVQSPAQIRPLFNQERMMIYATLDKEPTEKQVTVILSGNGPLSERISFPVDLDF 584


>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis
           thaliana GN=VIPP1 PE=1 SV=1
          Length = 330

 Score = 32.7 bits (73), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 43/212 (20%)

Query: 30  FKDPQGAETAVLLSGATIVDQSVTIELDPDYKPPATASVTSTARENKNEGGTESVVHKAE 89
           F+DP+            I++Q+V IE++ D      A+    A + + +   ++    ++
Sbjct: 93  FEDPE-----------KILEQTV-IEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSD 140

Query: 90  D---VVSTMLAKGFILGKDAVGKAKAFDEKHRFTSTATATVASLDQKIGFTEKISAGTTL 146
           D        LAKG     D     +A   +  F   ATA    LDQ+ G  + + + T L
Sbjct: 141 DWYKRAQLALAKG-----DEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRL 195

Query: 147 VNDKVREMDEKFHVSEKTKSAFSAAEQTVSNAGSAIMKNRYVLTGASWVTGAFNRVTKAA 206
           +  K++E   K       K    A  +T   A           T    + G  N  T  A
Sbjct: 196 LESKIQEAKAK-------KDTLLARARTAKTA-----------TKVQEMIGTVN--TSGA 235

Query: 207 GEVSEKTREKVLAEEEETRKADGYSQVSDTEF 238
               EK  EKV+A E E   AD  +Q+   E 
Sbjct: 236 LSAFEKMEEKVMAMESE---ADALTQIGTDEL 264


>sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=vip1 PE=1 SV=1
          Length = 257

 Score = 32.0 bits (71), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 32/146 (21%)

Query: 23  SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPDYKPPATASVTSTARENKNEGGTE 82
           +Q A++ F+ P   +TA+LL  A +    + I  +        AS T    +    GG +
Sbjct: 40  TQTAKIQFERPSATKTALLLQDALLGQNKIQITSEDG----GAASTT----DQGGAGGDQ 91

Query: 83  SVVHKAED-----VVSTMLAKGFILGKDAVGKAKAFDEKHRFTSTATATVASLDQKIGFT 137
           +   + ED     ++S +L++G+ L    + K+                   LDQ  G +
Sbjct: 92  AA--RQEDKPRSAIISELLSRGYHLSDVTLEKS-----------------IQLDQSYGVS 132

Query: 138 EKISAGTTLVNDKVREMDEKFHVSEK 163
            K           VR ++E++HV+EK
Sbjct: 133 SKFKGILESALSGVRSVNERYHVTEK 158


>sp|Q182K8|SYL_CLOD6 Leucine--tRNA ligase OS=Clostridium difficile (strain 630) GN=leuS
           PE=3 SV=1
          Length = 806

 Score = 32.0 bits (71), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 101 ILGKDA-VGKAKAFDEKHRFT--STATATVASLDQKIGFTEKISAGTTLVND--KVREMD 155
           ++ KD   G+  + D+  R+T  ST     A L +K GF   ISA   L+ND  K +E+D
Sbjct: 630 VVKKDVEFGELNSQDKDMRYTIHSTLKKVTADLSEKFGFNTAISALMELINDMYKYKELD 689


>sp|Q045P1|MUTS2_LACGA MutS2 protein OS=Lactobacillus gasseri (strain ATCC 33323 / DSM
           20243) GN=mutS2 PE=3 SV=1
          Length = 791

 Score = 31.2 bits (69), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 132 QKIGFTEKI-SAGTTLVNDK---VREMDEKFHVSEKTKSAFSAAEQTVSNAGSAIMKNRY 187
            ++G  E +      L+ND+   + +M E+   +E+TK+A    E    N   +I   R 
Sbjct: 498 HQLGMNEAVVDKARDLMNDEDSDINKMIERL--TEQTKAAEQLHETLKQNVDQSITLKRQ 555

Query: 188 VLTGASW----VTGAFNRVTKAAGEVSEKTR---EKVLAEEEETRKADG 229
           +  G  W    V     +  + A E+  K R   EK++ + EE R+A G
Sbjct: 556 LQNGLDWYNQQVQKQLEKSQEKADEMLAKKRKQAEKIINDLEEQRRAGG 604


>sp|Q93IE8|MUKB_AGGAC Chromosome partition protein MukB OS=Aggregatibacter
           actinomycetemcomitans GN=mukB PE=3 SV=1
          Length = 1496

 Score = 30.8 bits (68), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 136 FTEKISAGTTLVNDKVREMDEKFHVSEKTKSAFSAAEQTVS 176
           + E+  A   ++ DKV E+++K  +SE  K+ F  A Q V 
Sbjct: 469 YHEEFEAQAEVLTDKVLELEQKMSISEAAKTQFDKAYQLVC 509


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.123    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,396,679
Number of Sequences: 539616
Number of extensions: 2899240
Number of successful extensions: 8214
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8205
Number of HSP's gapped (non-prelim): 38
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)