Query 048268
Match_columns 244
No_of_seqs 139 out of 172
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 13:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nlw_A Eukaryotic translation 97.6 6.7E-05 2.3E-09 56.4 5.1 56 1-60 42-100 (105)
2 3ucg_A Polyadenylate-binding p 97.6 8E-05 2.8E-09 53.3 4.9 54 1-58 27-83 (89)
3 2mss_A Protein (musashi1); RNA 97.6 4E-05 1.4E-09 53.5 3.1 52 1-56 20-74 (75)
4 2e5g_A U6 snRNA-specific termi 97.6 7E-05 2.4E-09 54.8 4.4 53 1-59 29-81 (94)
5 1whw_A Hypothetical protein ri 97.5 0.00013 4.3E-09 53.6 5.3 55 1-59 29-87 (99)
6 2cq3_A RNA-binding protein 9; 97.5 0.00015 5E-09 53.7 5.6 55 1-59 36-92 (103)
7 2d9p_A Polyadenylate-binding p 97.5 0.00017 5.9E-09 53.3 5.4 55 1-59 36-92 (103)
8 2dgs_A DAZ-associated protein 97.4 0.00018 6.1E-09 52.9 5.2 54 1-58 31-87 (99)
9 3p5t_L Cleavage and polyadenyl 97.4 3.9E-05 1.3E-09 55.9 1.6 55 1-59 22-82 (90)
10 2cpi_A CCR4-NOT transcription 97.4 0.00019 6.5E-09 54.4 4.9 54 1-58 39-99 (111)
11 3s7r_A Heterogeneous nuclear r 97.3 0.00018 6.3E-09 51.5 4.3 52 1-56 32-86 (87)
12 4a8x_A RNA-binding protein wit 97.3 9.8E-05 3.4E-09 52.6 2.7 53 1-57 25-82 (88)
13 2cqb_A Peptidyl-prolyl CIS-tra 97.3 0.00023 8E-09 52.4 4.8 54 1-58 33-90 (102)
14 2dnz_A Probable RNA-binding pr 97.3 0.00025 8.5E-09 51.4 4.9 55 1-59 26-84 (95)
15 3mdf_A Peptidyl-prolyl CIS-tra 97.3 0.00013 4.5E-09 51.7 3.3 53 1-57 28-84 (85)
16 2e5h_A Zinc finger CCHC-type a 97.3 0.00018 6.3E-09 52.0 4.2 52 1-56 37-92 (94)
17 1x4a_A Splicing factor, argini 97.3 0.00023 7.8E-09 53.3 4.8 54 1-58 43-97 (109)
18 2dnm_A SRP46 splicing factor; 97.3 0.00028 9.7E-09 52.1 5.2 54 1-58 34-91 (103)
19 2krb_A Eukaryotic translation 97.3 6.6E-05 2.2E-09 53.5 1.5 50 1-54 28-80 (81)
20 2dh8_A DAZ-associated protein 97.3 0.00021 7.3E-09 53.0 4.4 54 1-58 37-93 (105)
21 2e44_A Insulin-like growth fac 97.3 0.00014 4.9E-09 52.9 3.3 54 1-58 36-90 (96)
22 2dng_A Eukaryotic translation 97.3 0.00053 1.8E-08 50.7 6.4 54 1-59 36-92 (103)
23 2cq4_A RNA binding motif prote 97.3 0.00018 6.2E-09 54.2 3.9 52 1-56 46-100 (114)
24 4fxv_A ELAV-like protein 1; RN 97.3 0.00014 4.8E-09 54.6 2.9 53 1-57 40-96 (99)
25 1x5s_A Cold-inducible RNA-bind 97.3 0.00016 5.5E-09 53.2 3.1 54 1-58 33-90 (102)
26 1wel_A RNA-binding protein 12; 97.2 0.0002 6.9E-09 55.1 3.8 55 1-57 46-101 (124)
27 2dgo_A Cytotoxic granule-assoc 97.2 0.00028 9.7E-09 53.1 4.6 56 1-60 36-95 (115)
28 2cq0_A Eukaryotic translation 97.2 0.00049 1.7E-08 50.8 5.7 54 1-58 36-93 (103)
29 2dgx_A KIAA0430 protein; RRM d 97.2 0.00018 6.2E-09 53.0 3.4 54 1-58 34-88 (96)
30 4f25_A Polyadenylate-binding p 97.2 0.00013 4.6E-09 55.7 2.7 54 1-58 26-81 (115)
31 1iqt_A AUF1, heterogeneous nuc 97.2 0.00012 4.1E-09 50.9 2.2 52 1-56 20-74 (75)
32 2ywk_A Putative RNA-binding pr 97.2 0.00025 8.4E-09 51.4 4.0 54 1-57 37-92 (95)
33 2dgv_A HnRNP M, heterogeneous 97.2 0.00014 4.6E-09 52.5 2.5 54 1-58 29-84 (92)
34 2err_A Ataxin-2-binding protei 97.2 0.00033 1.1E-08 53.0 4.7 54 1-58 50-105 (109)
35 3bs9_A Nucleolysin TIA-1 isofo 97.2 0.00021 7.1E-09 50.9 3.4 53 1-57 27-83 (87)
36 2cqi_A Nucleolysin TIAR; RNA r 97.2 0.00032 1.1E-08 51.8 4.5 54 1-58 36-91 (103)
37 2cpf_A RNA binding motif prote 97.2 0.00021 7.2E-09 52.2 3.3 54 1-58 26-86 (98)
38 2cpz_A CUG triplet repeat RNA- 97.2 0.00043 1.5E-08 52.2 5.2 54 1-58 46-103 (115)
39 2cqc_A Arginine/serine-rich sp 97.2 0.00025 8.4E-09 51.3 3.6 53 1-57 36-92 (95)
40 2kt5_A RNA and export factor-b 97.2 0.00033 1.1E-08 53.7 4.5 55 1-58 56-112 (124)
41 1x5t_A Splicing factor 3B subu 97.2 0.00048 1.6E-08 50.0 5.2 54 1-58 26-84 (96)
42 2ki2_A SS-DNA binding protein 97.2 0.00016 5.6E-09 52.1 2.6 54 1-59 22-79 (90)
43 1wi8_A EIF-4B, eukaryotic tran 97.2 0.00065 2.2E-08 50.3 5.7 53 1-58 36-92 (104)
44 1x4g_A Nucleolysin TIAR; struc 97.1 0.00029 1E-08 52.8 3.7 51 1-58 46-97 (109)
45 2db1_A Heterogeneous nuclear r 97.1 0.00034 1.2E-08 53.9 4.1 54 1-57 38-95 (118)
46 2x1f_A MRNA 3'-END-processing 97.1 0.00029 9.8E-09 51.6 3.5 54 1-58 23-80 (96)
47 2dgt_A RNA-binding protein 30; 97.1 0.0005 1.7E-08 49.9 4.7 49 1-58 31-80 (92)
48 3lqv_A PRE-mRNA branch site pr 97.1 0.00018 6.2E-09 54.2 2.3 53 1-57 29-82 (115)
49 2jwn_A Embryonic polyadenylate 97.1 0.00039 1.3E-08 53.0 3.9 54 1-58 57-113 (124)
50 3md1_A Nuclear and cytoplasmic 97.1 0.00039 1.3E-08 49.0 3.6 54 1-58 22-79 (83)
51 2do4_A Squamous cell carcinoma 97.1 0.00037 1.3E-08 51.2 3.6 54 1-57 38-93 (100)
52 1x4b_A Heterogeneous nuclear r 97.1 0.0008 2.7E-08 50.8 5.4 54 1-58 48-104 (116)
53 1p27_B RNA-binding protein 8A; 97.1 0.00024 8.1E-09 52.7 2.4 53 1-57 44-100 (106)
54 2khc_A Testis-specific RNP-typ 97.1 0.00061 2.1E-08 51.5 4.7 52 1-56 61-116 (118)
55 2fy1_A RNA-binding motif prote 97.0 0.00064 2.2E-08 52.1 4.8 56 1-59 28-85 (116)
56 2dnp_A RNA-binding protein 14; 97.0 0.00043 1.5E-08 50.0 3.5 50 1-59 30-80 (90)
57 1wg5_A Heterogeneous nuclear r 97.0 0.00093 3.2E-08 49.9 5.4 54 1-57 36-91 (104)
58 1oo0_B CG8781-PA, drosophila Y 97.0 0.0005 1.7E-08 51.3 3.8 53 1-57 47-103 (110)
59 1x5u_A Splicing factor 3B subu 97.0 0.00042 1.4E-08 51.2 3.4 54 1-58 36-93 (105)
60 2jrs_A RNA-binding protein 39; 97.0 0.00043 1.5E-08 52.5 3.4 54 1-58 47-104 (108)
61 2do0_A HnRNP M, heterogeneous 97.0 0.00082 2.8E-08 50.3 4.9 55 1-58 36-92 (114)
62 1x4c_A Splicing factor, argini 97.0 0.0004 1.4E-08 52.2 3.1 51 1-59 36-92 (108)
63 2lxi_A RNA-binding protein 10; 97.0 0.00047 1.6E-08 50.7 3.4 53 1-57 22-80 (91)
64 3md3_A Nuclear and cytoplasmic 97.0 0.00087 3E-08 51.8 5.1 57 1-60 21-79 (166)
65 2lmi_A GRSF-1, G-rich sequence 97.0 0.00047 1.6E-08 51.9 3.4 54 1-57 32-89 (107)
66 3ex7_B RNA-binding protein 8A; 97.0 0.00038 1.3E-08 53.2 2.9 54 1-58 43-100 (126)
67 2j76_E EIF-4B, EIF4B, eukaryot 97.0 0.00057 2E-08 50.6 3.8 53 1-58 40-96 (100)
68 1wez_A HnRNP H', FTP-3, hetero 97.0 0.0011 3.9E-08 49.8 5.4 54 1-58 36-90 (102)
69 2dnn_A RNA-binding protein 12; 97.0 0.00084 2.9E-08 51.8 4.8 53 1-57 37-90 (109)
70 2hgl_A HNRPF protein, heteroge 96.9 0.00059 2E-08 54.8 4.0 54 1-57 65-122 (136)
71 3ulh_A THO complex subunit 4; 96.9 0.0004 1.4E-08 51.5 2.6 54 1-57 50-105 (107)
72 2dgu_A Heterogeneous nuclear r 96.9 0.00055 1.9E-08 50.8 3.3 50 1-59 32-82 (103)
73 2la6_A RNA-binding protein FUS 96.9 0.00061 2.1E-08 50.0 3.5 53 1-57 34-98 (99)
74 3s8s_A Histone-lysine N-methyl 96.9 0.00059 2E-08 52.3 3.5 53 1-57 27-83 (110)
75 1p1t_A Cleavage stimulation fa 96.9 0.00044 1.5E-08 50.9 2.6 54 1-58 29-86 (104)
76 2kxn_B Transformer-2 protein h 96.9 0.00062 2.1E-08 53.5 3.6 53 1-57 67-123 (129)
77 3ns6_A Eukaryotic translation 96.9 0.00043 1.5E-08 51.6 2.5 53 1-57 33-90 (100)
78 2ek1_A RNA-binding protein 12; 96.9 0.001 3.5E-08 48.1 4.5 55 1-57 36-92 (95)
79 2cpj_A Non-POU domain-containi 96.9 0.00083 2.8E-08 49.3 4.0 51 1-58 36-87 (99)
80 1wf1_A RNA-binding protein RAL 96.9 0.00082 2.8E-08 50.4 4.0 49 1-58 49-98 (110)
81 1s79_A Lupus LA protein; RRM, 96.9 0.00044 1.5E-08 52.5 2.6 54 1-58 32-87 (103)
82 2cph_A RNA binding motif prote 96.9 0.0015 5E-08 48.3 5.3 54 1-58 36-95 (107)
83 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.9 0.00062 2.1E-08 52.4 3.3 52 1-56 84-139 (140)
84 2dnq_A RNA-binding protein 4B; 96.8 0.00091 3.1E-08 48.3 3.9 50 1-59 29-79 (90)
85 2cqp_A RNA-binding protein 12; 96.8 0.00094 3.2E-08 48.7 3.9 55 1-57 36-92 (98)
86 1h2v_Z 20 kDa nuclear CAP bind 96.8 0.00076 2.6E-08 53.6 3.5 55 1-59 60-118 (156)
87 2cpx_A Hypothetical protein FL 96.8 0.00097 3.3E-08 50.0 3.9 57 1-58 46-103 (115)
88 2dgw_A Probable RNA-binding pr 96.8 0.001 3.6E-08 47.9 3.9 54 1-58 31-85 (91)
89 1x5p_A Negative elongation fac 96.8 0.0018 6.3E-08 47.4 5.2 51 1-58 34-85 (97)
90 1u6f_A Tcubp1, RNA-binding pro 96.8 0.001 3.4E-08 51.7 4.0 55 1-59 63-121 (139)
91 3beg_B Splicing factor, argini 96.8 0.00065 2.2E-08 51.9 2.8 50 1-58 37-92 (115)
92 2cpy_A RNA-binding protein 12; 96.8 0.00099 3.4E-08 50.6 3.8 54 1-57 36-91 (114)
93 2xnq_A Nuclear polyadenylated 96.8 0.00083 2.9E-08 49.8 3.3 48 1-57 44-92 (97)
94 2dnh_A Bruno-like 5, RNA bindi 96.8 0.0015 5E-08 48.2 4.5 55 1-58 36-95 (105)
95 2cpe_A RNA-binding protein EWS 96.8 0.0023 7.7E-08 47.9 5.6 55 1-59 36-102 (113)
96 1nu4_A U1A RNA binding domain; 96.7 0.00028 9.6E-09 51.3 0.3 53 1-57 33-86 (97)
97 2rs2_A Musashi-1, RNA-binding 96.7 0.0014 4.9E-08 49.5 4.3 54 1-58 46-102 (109)
98 2hvz_A Splicing factor, argini 96.7 0.00068 2.3E-08 49.9 2.4 53 1-59 21-74 (101)
99 2a3j_A U1 small nuclear ribonu 96.7 0.00065 2.2E-08 53.9 2.4 53 1-57 54-107 (127)
100 2cqg_A TDP-43, TAR DNA-binding 96.7 0.0028 9.6E-08 46.6 5.6 54 1-59 36-92 (103)
101 2dgp_A Bruno-like 4, RNA bindi 96.6 0.0018 6.2E-08 47.8 4.3 54 1-58 34-94 (106)
102 1why_A Hypothetical protein ri 96.6 0.00094 3.2E-08 48.8 2.7 50 1-57 38-90 (97)
103 2kn4_A Immunoglobulin G-bindin 96.6 0.0012 4.2E-08 52.1 3.5 54 1-58 91-148 (158)
104 2jvr_A Nucleolar protein 3; RN 96.6 0.0011 3.7E-08 51.5 3.1 53 1-58 49-103 (111)
105 2hzc_A Splicing factor U2AF 65 96.6 0.001 3.5E-08 47.2 2.7 44 6-56 43-86 (87)
106 1x4e_A RNA binding motif, sing 96.6 0.00045 1.5E-08 49.2 0.8 53 1-55 26-80 (85)
107 2lea_A Serine/arginine-rich sp 96.6 0.0015 5.3E-08 51.5 3.9 54 1-58 68-125 (135)
108 2kvi_A Nuclear polyadenylated 96.6 0.0007 2.4E-08 49.7 1.7 48 1-57 32-80 (96)
109 2fc9_A NCL protein; structure 96.6 0.004 1.4E-07 45.7 5.7 52 1-58 36-89 (101)
110 1x4h_A RNA-binding protein 28; 96.6 0.003 1E-07 46.9 5.1 54 1-58 36-99 (111)
111 2qfj_A FBP-interacting repress 96.6 0.0019 6.6E-08 52.4 4.4 54 1-58 146-203 (216)
112 1uaw_A Mouse-musashi-1; RNP-ty 96.5 0.0017 6E-08 44.9 3.4 52 1-56 21-75 (77)
113 2cqd_A RNA-binding region cont 96.5 0.003 1E-07 47.5 5.1 54 1-58 38-94 (116)
114 1whx_A Hypothetical protein ri 96.5 0.0015 5.2E-08 49.7 3.3 51 1-58 31-82 (111)
115 2cpd_A Apobec-1 stimulating pr 96.5 0.0027 9.3E-08 46.5 4.5 49 1-58 36-87 (99)
116 2dit_A HIV TAT specific factor 96.5 0.0019 6.5E-08 49.0 3.7 52 1-57 47-99 (112)
117 2div_A TRNA selenocysteine ass 96.5 0.0018 6.1E-08 47.3 3.2 53 1-57 30-91 (99)
118 3md3_A Nuclear and cytoplasmic 96.5 0.0019 6.6E-08 49.8 3.5 53 1-57 108-164 (166)
119 1fjc_A Nucleolin RBD2, protein 96.5 0.0018 6E-08 47.0 3.1 51 1-58 37-89 (96)
120 2i2y_A Fusion protein consists 96.5 0.0012 4.2E-08 52.0 2.4 51 1-57 94-145 (150)
121 2voo_A Lupus LA protein; RNA-b 96.4 0.002 6.7E-08 54.0 3.7 57 1-61 130-188 (193)
122 3pgw_A U1-A; protein-RNA compl 96.4 0.0023 7.7E-08 54.7 4.1 53 1-57 34-87 (282)
123 2ytc_A PRE-mRNA-splicing facto 96.4 0.0011 3.8E-08 46.9 1.8 49 1-56 33-83 (85)
124 2cjk_A Nuclear polyadenylated 96.4 0.0021 7.1E-08 50.1 3.5 54 1-58 108-164 (167)
125 1fxl_A Paraneoplastic encephal 96.4 0.0025 8.6E-08 49.2 3.7 54 1-58 23-80 (167)
126 2pe8_A Splicing factor 45; RRM 96.3 0.0035 1.2E-07 47.9 4.3 53 1-57 34-91 (105)
127 2xs2_A Deleted in azoospermia- 96.3 0.0027 9.2E-08 46.6 3.6 53 1-57 30-83 (102)
128 3pgw_S U1-70K; protein-RNA com 96.3 0.0019 6.7E-08 60.8 3.4 54 1-58 123-180 (437)
129 2dnr_A Synaptojanin-1; RRM dom 96.3 0.0028 9.7E-08 48.8 3.7 49 1-58 36-84 (91)
130 1rk8_A CG8781-PA, CG8781-PA pr 96.3 0.0025 8.4E-08 51.4 3.5 53 1-57 93-149 (165)
131 2g4b_A Splicing factor U2AF 65 96.3 0.003 1E-07 49.3 3.9 53 1-57 115-171 (172)
132 1l3k_A Heterogeneous nuclear r 96.3 0.0027 9.2E-08 50.7 3.5 54 1-58 125-181 (196)
133 1b7f_A Protein (SXL-lethal pro 96.2 0.0037 1.3E-07 48.5 4.1 54 1-58 24-81 (168)
134 3q2s_C Cleavage and polyadenyl 96.2 0.0027 9.1E-08 54.6 3.5 53 1-57 89-147 (229)
135 1fj7_A Nucleolin RBD1, protein 96.2 0.0015 5.2E-08 48.0 1.7 54 1-58 38-93 (101)
136 2ghp_A U4/U6 snRNA-associated 96.2 0.0037 1.3E-07 53.7 4.1 55 1-58 62-116 (292)
137 4f02_A Polyadenylate-binding p 96.2 0.0023 7.7E-08 53.2 2.7 54 1-57 124-178 (213)
138 3v4m_A Splicing factor U2AF 65 96.1 0.0027 9.3E-08 48.4 2.8 53 1-57 36-94 (105)
139 2dhg_A TRNA selenocysteine ass 96.1 0.0031 1E-07 46.4 2.8 52 4-58 34-88 (104)
140 2jvo_A Nucleolar protein 3; nu 96.1 0.0033 1.1E-07 47.6 2.9 48 1-57 52-100 (108)
141 1jmt_A Splicing factor U2AF 35 96.1 0.0032 1.1E-07 47.9 2.8 53 2-57 49-103 (104)
142 2lcw_A RNA-binding protein FUS 95.0 0.001 3.5E-08 50.3 0.0 54 1-58 28-93 (116)
143 2dis_A Unnamed protein product 96.0 0.0059 2E-07 45.2 4.2 54 1-58 29-90 (109)
144 2la4_A Nuclear and cytoplasmic 96.0 0.002 6.8E-08 47.3 1.5 50 1-57 48-98 (101)
145 2bz2_A Negative elongation fac 96.0 0.0042 1.4E-07 48.2 3.3 51 1-58 58-109 (121)
146 1l3k_A Heterogeneous nuclear r 96.0 0.0046 1.6E-07 49.3 3.6 55 1-59 34-91 (196)
147 2lkz_A RNA-binding protein 5; 96.0 0.0094 3.2E-07 44.7 5.1 54 1-58 30-93 (95)
148 2yh0_A Splicing factor U2AF 65 96.0 0.0034 1.2E-07 50.2 2.7 40 23-62 51-90 (198)
149 2f3j_A RNA and export factor b 95.9 0.0035 1.2E-07 51.8 2.7 54 1-57 109-164 (177)
150 2ghp_A U4/U6 snRNA-associated 95.9 0.0067 2.3E-07 52.0 4.6 53 1-57 232-288 (292)
151 2e5j_A Methenyltetrahydrofolat 95.9 0.0028 9.4E-08 46.4 1.7 52 1-58 40-92 (97)
152 2yh0_A Splicing factor U2AF 65 95.9 0.0062 2.1E-07 48.6 3.9 53 1-57 135-191 (198)
153 2cq1_A PTB-like protein L; RRM 95.9 0.012 4E-07 44.7 5.2 51 1-58 36-89 (101)
154 2cqh_A IGF-II mRNA-binding pro 95.8 0.0047 1.6E-07 44.6 2.7 50 1-58 29-81 (93)
155 2hgn_A Heterogeneous nuclear r 95.8 0.0022 7.4E-08 51.7 1.0 54 1-58 67-121 (139)
156 2qfj_A FBP-interacting repress 95.8 0.0057 1.9E-07 49.5 3.4 53 1-57 49-105 (216)
157 3n9u_C Cleavage and polyadenyl 95.7 0.0048 1.6E-07 50.1 2.6 53 1-57 76-134 (156)
158 1x5o_A RNA binding motif, sing 95.7 0.01 3.4E-07 44.4 4.1 52 1-56 46-108 (114)
159 3tyt_A Heterogeneous nuclear r 95.6 0.0055 1.9E-07 51.5 2.8 51 1-57 26-77 (205)
160 1qm9_A Polypyrimidine tract-bi 95.5 0.0054 1.9E-07 49.5 2.3 52 1-58 25-77 (198)
161 2diu_A KIAA0430 protein; struc 95.5 0.0085 2.9E-07 46.6 3.3 48 1-59 34-83 (96)
162 2g4b_A Splicing factor U2AF 65 95.5 0.0069 2.4E-07 47.3 2.8 40 23-62 51-90 (172)
163 1x4d_A Matrin 3; structural ge 95.4 0.02 6.8E-07 43.8 5.1 53 1-60 37-92 (102)
164 3smz_A Protein raver-1, ribonu 95.4 0.013 4.5E-07 50.0 4.5 54 1-57 206-261 (284)
165 3egn_A RNA-binding protein 40; 95.4 0.01 3.5E-07 46.3 3.5 58 1-58 66-128 (143)
166 1ufw_A Synaptojanin 2; RNP dom 95.3 0.0086 2.9E-07 46.5 2.5 48 1-57 45-92 (95)
167 2adc_A Polypyrimidine tract-bi 95.2 0.0066 2.3E-07 50.9 2.0 52 1-58 56-108 (229)
168 1b7f_A Protein (SXL-lethal pro 95.2 0.011 3.6E-07 45.9 3.0 51 1-55 110-166 (168)
169 2ad9_A Polypyrimidine tract-bi 95.2 0.012 4.1E-07 46.5 3.3 51 1-58 52-105 (119)
170 2e5i_A Heterogeneous nuclear r 95.2 0.012 4.3E-07 46.6 3.3 51 1-57 46-99 (124)
171 2hgm_A HNRPF protein, heteroge 95.1 0.015 5.1E-07 46.2 3.6 53 1-57 63-118 (126)
172 1sjq_A Polypyrimidine tract-bi 95.1 0.0083 2.8E-07 46.6 1.9 50 1-57 37-89 (105)
173 3sde_A Paraspeckle component 1 94.9 0.02 6.8E-07 49.0 4.2 51 1-58 43-94 (261)
174 3s6e_A RNA-binding protein 39; 94.9 0.014 4.7E-07 45.6 2.7 52 1-57 38-90 (114)
175 1fxl_A Paraneoplastic encephal 94.9 0.014 4.9E-07 44.9 2.8 51 1-55 109-165 (167)
176 1wex_A Hypothetical protein (r 94.9 0.018 6E-07 43.9 3.2 51 1-58 36-89 (104)
177 2dha_A FLJ20171 protein; RRM d 94.8 0.007 2.4E-07 47.7 0.9 54 1-57 44-102 (123)
178 3r27_A HnRNP L, heterogeneous 94.8 0.013 4.5E-07 45.1 2.3 49 1-56 42-93 (100)
179 3ue2_A Poly(U)-binding-splicin 94.8 0.01 3.6E-07 46.4 1.8 53 1-57 46-106 (118)
180 3smz_A Protein raver-1, ribonu 94.7 0.024 8.3E-07 48.3 4.2 56 1-58 116-173 (284)
181 2fc8_A NCL protein; structure 94.7 0.054 1.9E-06 39.4 5.4 35 24-58 55-90 (102)
182 1sjr_A Polypyrimidine tract-bi 94.6 0.012 4.1E-07 49.3 2.0 52 1-57 67-121 (164)
183 4f02_A Polyadenylate-binding p 94.5 0.027 9.2E-07 46.6 3.8 54 1-58 36-93 (213)
184 1wg1_A KIAA1579 protein, homol 94.3 0.049 1.7E-06 39.0 4.3 51 1-59 26-77 (88)
185 1x4f_A Matrin 3; structural ge 94.0 0.049 1.7E-06 42.5 4.2 51 1-58 47-100 (112)
186 3zzy_A Polypyrimidine tract-bi 93.8 0.034 1.2E-06 44.7 2.9 51 1-56 49-102 (130)
187 1fje_B Nucleolin RBD12, protei 93.7 0.02 6.7E-07 45.0 1.2 38 22-59 53-90 (175)
188 1wf0_A TDP-43, TAR DNA-binding 93.5 0.081 2.8E-06 37.6 4.2 51 1-58 26-76 (88)
189 2dnl_A Cytoplasmic polyadenyla 93.4 0.056 1.9E-06 40.7 3.4 54 1-58 29-99 (114)
190 2cjk_A Nuclear polyadenylated 93.4 0.046 1.6E-06 42.3 2.9 52 1-57 24-78 (167)
191 2j8a_A Histone-lysine N-methyl 93.3 0.072 2.5E-06 43.8 4.0 53 1-57 27-93 (136)
192 2d9o_A DNAJ (HSP40) homolog, s 93.2 0.092 3.2E-06 39.9 4.4 50 1-57 38-87 (100)
193 3nmr_A Cugbp ELAV-like family 93.1 0.03 1E-06 43.5 1.4 54 1-58 24-86 (175)
194 3d2w_A TAR DNA-binding protein 93.0 0.067 2.3E-06 38.9 3.2 48 1-57 32-81 (89)
195 1fje_B Nucleolin RBD12, protei 92.9 0.073 2.5E-06 41.7 3.4 36 22-57 135-171 (175)
196 3nmr_A Cugbp ELAV-like family 92.8 0.045 1.5E-06 42.4 2.1 47 1-50 116-164 (175)
197 2cq2_A Hypothetical protein LO 92.4 0.055 1.9E-06 42.5 2.1 50 1-57 48-103 (114)
198 2m2b_A RNA-binding protein 10; 92.3 0.04 1.4E-06 42.5 1.2 53 1-58 44-106 (131)
199 3u1l_A PRE-mRNA-splicing facto 90.7 0.1 3.5E-06 45.9 2.2 51 1-58 164-227 (240)
200 3tyt_A Heterogeneous nuclear r 90.6 0.11 3.7E-06 43.5 2.2 46 1-50 144-193 (205)
201 3sde_A Paraspeckle component 1 89.9 0.18 6.1E-06 43.0 3.0 57 1-60 117-179 (261)
202 3dxb_A Thioredoxin N-terminall 87.6 0.28 9.6E-06 40.7 2.6 53 1-57 150-210 (222)
203 1owx_A Lupus LA protein, SS-B, 84.8 1 3.4E-05 35.8 4.3 50 1-57 40-93 (121)
204 2wbr_A GW182, gawky, LD47780P; 83.5 0.53 1.8E-05 35.8 2.1 50 1-57 28-78 (89)
205 1qm9_A Polypyrimidine tract-bi 82.3 0.45 1.5E-05 38.0 1.4 34 23-56 158-193 (198)
206 2adc_A Polypyrimidine tract-bi 81.6 0.73 2.5E-05 38.3 2.5 34 24-57 190-225 (229)
207 1wwh_A Nucleoporin 35, nucleop 81.2 1.1 3.9E-05 35.8 3.3 51 1-58 44-95 (119)
208 2l9w_A U4/U6 snRNA-associated- 79.2 1.2 4.2E-05 35.7 2.9 45 5-56 51-96 (117)
209 2dhx_A Poly (ADP-ribose) polym 76.0 2.5 8.5E-05 33.2 3.8 36 24-59 48-83 (104)
210 3tht_A Alkylated DNA repair pr 64.3 3.2 0.00011 38.2 2.4 41 1-48 41-82 (345)
211 3p3d_A Nucleoporin 53; structu 57.1 5.8 0.0002 32.3 2.5 34 25-58 64-97 (132)
212 3pgw_A U1-A; protein-RNA compl 32.8 19 0.00063 30.2 1.9 29 24-52 245-274 (282)
213 1smz_A Transportan in bicellar 27.3 26 0.00091 21.1 1.4 21 96-116 5-25 (27)
214 2eqj_A Metal-response element- 27.1 26 0.00088 25.4 1.5 23 3-34 30-52 (66)
215 1yo3_A Dynein light chain 1; s 23.1 75 0.0026 24.2 3.6 30 106-135 34-64 (102)
216 4hcz_A PHD finger protein 1; p 22.4 40 0.0014 23.8 1.8 23 3-34 20-42 (58)
217 3rjs_A Dynein light chain moto 21.9 84 0.0029 23.1 3.6 32 105-136 20-52 (89)
218 2kvo_A Photosystem II reaction 20.8 72 0.0025 25.5 3.1 29 11-39 15-44 (120)
219 2e5p_A Protein PHF1, PHD finge 20.6 41 0.0014 24.5 1.5 23 3-34 26-48 (68)
No 1
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.62 E-value=6.7e-05 Score=56.38 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=46.2
Q ss_pred CcccccccceecccccccCCCCc-eEEEEEEeCCchhhhhhh-ccCceecCc-eEEEecCCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERS-QIARVVFKDPQGAETAVL-LSGATIVDQ-SVTIELDPDY 60 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~-~V~Vt~~~~~ 60 (244)
|+=||.|.+|. +.+..+.+ ..|+|+|+++..++.|+- |||..|.|. .|.|..+.+.
T Consensus 42 F~~~G~v~~v~----i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 42 FSKFGKITNDF----YPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HGGGSCEEEEE----CCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HhcCCCEEEEE----eeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 67799999986 33555544 489999999999999998 899999998 9999866543
No 2
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.58 E-value=8e-05 Score=53.31 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=44.6
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++. +.++ .+. ...|+|+|+++..++.|+.|+|..|.|..|.|..+.
T Consensus 27 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 27 FHGCGSVNRVT----ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HGGGCCEEEEE----EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred HHhCCCEEEEE----EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 66789999886 3333 333 458999999999999999999999999999998654
No 3
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.57 E-value=4e-05 Score=53.53 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=42.9
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
|+-||.|.++.. .++ .+. ...|+|+|+++..++.|+-|+|..|.|..|.|..
T Consensus 20 F~~~G~i~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 20 FEQFGKVDDAML----MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp HHTTSCCSEECC----CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred HHhcCCEEEEEE----EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 677999999863 332 233 4589999999999999999999999999999864
No 4
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=7e-05 Score=54.83 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=43.6
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|. +-+..+. -|+|+|+++..++.||-|+|..|.|..|.|..+..
T Consensus 29 F~~~G~v~~v~----~~~~~g~--~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 29 FLAFGPVASVV----MDKDKGV--FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp GGGTSCEEEEE----ECSSSCC--EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred HHhcCCeEEEE----EcCCCCc--EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 67799999873 2233333 99999999999999999999999999999986543
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=0.00013 Score=53.56 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=44.7
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|.. ..+ .+. ...|+|+|+++..++.|| .|+|..|.|..|.|..+..
T Consensus 29 F~~~G~i~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 29 FSAYGPLSELHY----PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp HHTTSCEEEEEC----CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred HHhcCCEeEEEE----EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 567899998863 333 333 348999999999999999 9999999999999986643
No 6
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=0.00015 Score=53.68 Aligned_cols=55 Identities=13% Similarity=0.283 Sum_probs=45.2
Q ss_pred CcccccccceecccccccCC-CCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN-ERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~-~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|. +..+. .....|+|+|+++..++.||- |+|..|.|..|.|..+..
T Consensus 36 f~~~G~v~~v~----i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 36 FGQFGKILDVE----IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp GGGTSCEEEEE----EECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred HHhcCCeEEEE----EEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 67899999986 33333 345589999999999999996 899999999999986543
No 7
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=0.00017 Score=53.31 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=45.4
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|.. ..+.+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+..
T Consensus 36 F~~~G~i~~v~i----~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 36 FSPFGTITSAKV----MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp TTTTSCEEEEEE----EECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred HHhcCCEEEEEE----EcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 778999999863 333444 4589999999999999998 999999999999986543
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.43 E-value=0.00018 Score=52.86 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=44.6
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ .+ ....|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 31 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 31 FKKFGVVTEVV----MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp HSSSSCEEEEE----ECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred HHhcCCeEEEE----EEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 67789999986 3333 23 3458999999999999999999999999999998654
No 9
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.43 E-value=3.9e-05 Score=55.88 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=42.4
Q ss_pred Ccccc--cccceecccccccC--CCCc-eEEEEEEeCCchhhhhh-hccCceecCceEEEecCCC
Q 048268 1 MSLWG--QLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcG--kI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~~ 59 (244)
|+-|| .|.++. +..+ .+.+ .-|+|+|+++..++.|+ .|||..|.|..|.|..+..
T Consensus 22 F~~~G~~~v~~v~----i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 22 VHSLGVNDILEIK----FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp HHTTTCCCCCCEE----EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred HHHhCCCceEEEE----EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 56789 898886 3333 3443 36999999999999999 7999999999999986543
No 10
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.00019 Score=54.39 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=44.2
Q ss_pred CcccccccceecccccccCC--CCc----eEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ERS----QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~s----q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. .++. +.+ ..|+|+|+++..|+.|+- |||..|.|..|.|..+.
T Consensus 39 F~~~G~i~~v~i----~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 39 FGKFGKIHKVVI----NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp TTTTSCEEEEEE----ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred hhccCCEEEEEE----ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 788999999963 3332 223 389999999999999998 69999999999998553
No 11
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.35 E-value=0.00018 Score=51.46 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=42.9
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhhccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
|+-||.|.++. +.++ .+.+ .-|+|+|+++..++.|+-++|..|.|..|.|..
T Consensus 32 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 32 FTKFGEVVDCT----IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp HTTTSCEEEEE----EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred HHhCCCEEEEE----EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 67789999996 3333 2443 479999999999999999999999999999864
No 12
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.33 E-value=9.8e-05 Score=52.61 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=43.6
Q ss_pred CcccccccceecccccccCCC----CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNE----RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~----~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.++. +..+.. ....|+|+|+++..++.|+- |||..|.|..|.|..+
T Consensus 25 F~~~G~i~~~~----i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 25 FSTYGKIKMID----MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp HHTTSCEEEEE----CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHhCCCEEEEE----EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 56789999886 333332 34589999999999999998 8999999999999854
No 13
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00023 Score=52.36 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=44.1
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +..+ .+ ....|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 33 f~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 33 FIPFGDITDIQ----IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp HTTTSCCCCEE----CCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred hhccCCEEEEE----EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 67799999986 3333 23 3458999999999999999 699999999999998654
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00025 Score=51.41 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=44.8
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|. +.++ .+. ...|+|+|+++..++.|+- |||..|.|..|.|..+..
T Consensus 26 f~~~G~v~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 26 FEPFGKIDNIV----LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp HTTTSCEEEEE----EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred HHhcCCEeEEE----EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 67789999986 3333 233 3489999999999999998 999999999999986643
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.33 E-value=0.00013 Score=51.75 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=42.7
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.++ .+ ....|+|+|+++..++.|+ .|||..|.|..|.|..+
T Consensus 28 f~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 28 FIPFGDITDIQ----IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp HGGGSCEEEEE----CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HhccCCEEEEE----EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999986 3332 22 2347999999999999999 89999999999999743
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00018 Score=52.03 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=42.7
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~ 56 (244)
|+-||.|.+|.. ..+. +. ...|+|+|+++..++.|+ .|||..|.|..|.|..
T Consensus 37 f~~~G~v~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 37 FSKYGKVVKVTI----MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp TTTTSCEEEEEE----CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred HHhcCCeEEEEE----EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 778999999863 3332 22 348999999999999999 7999999999999964
No 17
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00023 Score=53.27 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=45.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +..+......|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 43 F~~~G~v~~~~----i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 43 FYKYGAIRDID----LKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp HGGGSCEEEEE----ECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHhcCCeEEEE----EEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 67789999886 3344444568999999999999999 999999999999998654
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.33 E-value=0.00028 Score=52.12 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=44.2
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +..+ .+. ...|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 34 f~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 34 FEKYGRVGDVY----IPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp HTTTSCEEEEE----CCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred HHhcCCEEEEE----EEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 67789999986 3333 233 3479999999999999998 99999999999998664
No 19
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.31 E-value=6.6e-05 Score=53.53 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=41.5
Q ss_pred CcccccccceecccccccCCCCc-eEEEEEEeCCchhhhhhh-ccCceecCc-eEEE
Q 048268 1 MSLWGQLSKILRNSFPLCDNERS-QIARVVFKDPQGAETAVL-LSGATIVDQ-SVTI 54 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~-~V~V 54 (244)
|+=||.|.+|. +.++.+.+ .-|+|+|+++..|+.|+- |||..|.|. .|.|
T Consensus 28 F~~~G~i~~v~----i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 28 FSKFGKITNDF----YPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHTTCCEEEEE----CCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HhhcCCeEEEE----ecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 56789999986 33555444 589999999999999998 999999998 7776
No 20
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.30 E-value=0.00021 Score=52.97 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=44.0
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++ .+.. ..|+|+|+++..++.||-++|..|.|..|.|..+.
T Consensus 37 F~~~G~v~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 37 FSQYGEVVDCV----IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp HHTTSCEEEEE----EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred HHhcCCeEEEE----EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 56789999986 3333 3333 48999999999999999999999999999997654
No 21
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00014 Score=52.94 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=42.2
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++.. +..+....+ |+|+|+++..++.|+- |||..|.|..|.|..+.
T Consensus 36 F~~~G~v~~~~~---i~~~~~~~~-afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 36 LVQYGVVESCEQ---VNTDSETAV-VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp HHHHSCEEEEEE---ECCSSSSEE-EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred HHhcCCeEEEEE---eecCCCCCE-EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 556899988831 233333333 9999999999999996 99999999999998654
No 22
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.29 E-value=0.00053 Score=50.74 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=42.8
Q ss_pred CcccccccceecccccccCC--CCc-eEEEEEEeCCchhhhhhhccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~ 59 (244)
|+=|| |.+|. +.++. +.. ..|+|+|+++..++.||-|||..|.|..|.|..+..
T Consensus 36 F~~~g-i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 36 FKDLS-IRSVR----LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp TTTSC-EEEEE----EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCC
T ss_pred HHhCC-ceEEE----EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecC
Confidence 55567 88876 33332 333 489999999999999999999999999999986643
No 23
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.00018 Score=54.24 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=43.1
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhhhccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
|+=||.|.+|. +..+. +. ...|+|+|+++..++.||.|+|..|.|..|.|..
T Consensus 46 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 46 FSAVGKVRDVR----IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HTTTSCEEEEE----ECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred HHhCCCEeEEE----EEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 67799999986 33332 33 3489999999999999999999999999999974
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=54.62 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=43.0
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++. +.++ .+.+ ..|+|+|+++..|+.|+ -|||..|.|..|.|..+
T Consensus 40 F~~~G~I~~v~----i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 40 FSSIGEVESAK----LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp HHTTSCEEEEE----EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHhcCCEEEeE----eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 66799999986 3333 2443 37999999999999999 59999999999999754
No 25
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00016 Score=53.25 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=43.8
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ .+. ...|+|+|+++..|+.|+ .|||..|.|..|.|..+.
T Consensus 33 f~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 33 FSKYGQISEVV----VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp HHHHSCCCEEE----ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred HHhcCCeEEEE----EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56689999986 3333 233 348999999999999999 899999999999998553
No 26
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.0002 Score=55.13 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=43.6
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.++... +.+..+. ...|+|+|+++..++.||-|||..|.|..|.|..+
T Consensus 46 F~~~G~v~~~~~~--~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 46 FKKLDIVEDSIYI--AYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp SCSSCBCTTTCEE--EECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred HHhcCCccceEEE--EECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 7889999884321 2223343 45799999999999999999999999999999754
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.25 E-value=0.00028 Score=53.10 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=45.2
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPDY 60 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~~ 60 (244)
|+-||.|.+|. +.++ .+. ...|+|+|+++..++.||- |+|..|.|..|.|..+...
T Consensus 36 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 36 FAPFGRISDAR----VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp HGGGSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred HHhcCCeEEEE----EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 67799999986 3333 344 3489999999999999994 9999999999999866543
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.00049 Score=50.81 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=44.4
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ..+ .+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 36 f~~~G~i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 36 FRPFGSISRIYL----AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp STTTCCEEEEEE----EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHhCCCeEEEEE----eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 778999999863 333 333 3479999999999999998 99999999999998653
No 29
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.00018 Score=53.03 Aligned_cols=54 Identities=19% Similarity=0.142 Sum_probs=43.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ..+...-.-|+|+|+++..++.|+- |||..|.|..|.|..+.
T Consensus 34 F~~~G~v~~v~i----~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 34 FARHGKVKSVEL----SPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp HHHHSCEEEEEE----CSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ccccCcEEEEEE----EeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 556899999863 3332213469999999999999998 99999999999998654
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.24 E-value=0.00013 Score=55.69 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=44.3
Q ss_pred CcccccccceecccccccCCCCc-eEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERS-QIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~s-q~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++. +.++.+.+ .-|+|+|+++..|+.|| -|+|..|.|..|.|..+.
T Consensus 26 F~~~G~v~~v~----i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 26 FSAFGNILSCK----VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp HGGGSCEEEEE----EEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred HhccCCEEEEE----EeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 67799999986 34444333 47999999999999999 599999999999998654
No 31
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.24 E-value=0.00012 Score=50.92 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=41.9
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
|+=||.|.++. +..+ .+. ...|+|+|+++..++.|+-++|..|.|..|.|..
T Consensus 20 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 20 FGGFGEVESIE----LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp HHHHSCCSEEC----CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred HHhcCCeEEEE----EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 56689999886 3332 233 4589999999999999999999999999998863
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.24 E-value=0.00025 Score=51.44 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=43.6
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|... .+.++. ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 37 F~~~G~i~~v~i~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 37 FLQAGPLTKVTIC---KDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp HGGGSCEEEEEEE---ECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred HHhcCCEEEEEEE---ECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 6678999998632 222233 4589999999999999998 9999999999999754
No 33
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.23 E-value=0.00014 Score=52.55 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=44.2
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++.+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 29 f~~~G~v~~~~----i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 29 FNECGHVLYAD----IKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp HHTTSCEEEEE----EEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred HHhcCCEEEEE----EEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 56689999986 3344443 4589999999999999998 89999999999998654
No 34
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.23 E-value=0.00033 Score=53.01 Aligned_cols=54 Identities=13% Similarity=0.291 Sum_probs=44.7
Q ss_pred CcccccccceecccccccCC-CCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN-ERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~-~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++. +....|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 50 F~~~G~i~~v~----i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 50 FGQFGKILDVE----IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp GGGTCCCSCEE----ECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhcCCEEEEE----EEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 77899999986 33333 334589999999999999998 89999999999997653
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.23 E-value=0.00021 Score=50.90 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=43.5
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|. +.++ .+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 27 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 27 FAPFGRISDAR----VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp HGGGSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHhcCCEeEEE----EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 67789999986 3333 344 3489999999999999998 8999999999999754
No 36
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.22 E-value=0.00032 Score=51.85 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=44.4
Q ss_pred CcccccccceecccccccCC-CCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN-ERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~-~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++. .....|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 36 F~~~G~i~~v~----i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 36 FSQIGPCKSCK----MITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp HHHHSCEEEEE----EECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred HHhcCCEeEEE----EEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 56789999986 33432 234589999999999999998 99999999999998654
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.00021 Score=52.22 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=43.8
Q ss_pred CcccccccceecccccccCC------CCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN------ERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~------~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. .++. .....|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 26 F~~~G~i~~v~i----~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 26 FSKVGAIKSCTI----SKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp HHTTSCEEEEEE----EEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred HHhcCCeEEEEE----EecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 567899998863 3322 223589999999999999999 89999999999998654
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.20 E-value=0.00043 Score=52.21 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=44.0
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ..+ .+.. ..|+|+|+++..++.|| .|||..|.|..|.|..+.
T Consensus 46 F~~~G~i~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 46 FMPFGNVVSAKV----FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp HGGGSCCSEEEE----EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHhcCCeEEEEE----EECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 667899999863 333 3443 47999999999999999 899999999999998553
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.00025 Score=51.31 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=43.2
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|. +.++. +. ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 36 f~~~G~v~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 36 FSKYGPIADVS----IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp HHTTSCEEEEE----EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHhcCCeeEEE----EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 56789999986 33332 33 3489999999999999998 8999999999999754
No 40
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.20 E-value=0.00033 Score=53.70 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=44.0
Q ss_pred CcccccccceecccccccCCC-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|... .+..+ ....|+|+|+++..++.|+- |||..|.|..|.|..+.
T Consensus 56 F~~~G~v~~v~i~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 56 FAEFGTLKKAAVD---YDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp HHTTSCCSEEEEE---CCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred HHhcCCeeEEEEE---ECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999998632 22233 34589999999999999998 99999999999998543
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.00048 Score=49.98 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=43.7
Q ss_pred Ccccccccce-eccccccc--CCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKI-LRNSFPLC--DNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si-~~~~el~~--~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++ . +.+ ..+. ...|+|+|+++..|+.|+- |+|..|.|..|.|..+.
T Consensus 26 F~~~G~i~~~~~----i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 26 FSAFGVILQTPK----IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp HHTTSCBSSCCE----ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred HHhcCCeeEEEE----EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 5668999888 5 333 2333 4589999999999999998 99999999999998654
No 42
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.20 E-value=0.00016 Score=52.05 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=41.2
Q ss_pred CcccccccceecccccccCC--C-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--E-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|. +.++. + ....|+|+|+++. +..|+. |||..|.|..|.|..+..
T Consensus 22 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 22 FSQFGKVFNVK----LIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp HHHHTCCSEEE----ECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred HHhcCCEEEEE----EEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 56689999986 33332 3 3458999999999 777776 899999999999986543
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=0.00065 Score=50.32 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=43.4
Q ss_pred CcccccccceecccccccCC---CC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN---ER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~---~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=|| |.+|. +.++. +. ...|+|+|+++..++.||.|+|..|.|..|.|..+.
T Consensus 36 F~~~G-i~~v~----i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 36 FRGLN-ISAVR----LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp TTTSC-EEEEE----CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred HHHCC-ceEEE----EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEcc
Confidence 67789 98886 33332 33 347999999999999999999999999999998654
No 44
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.14 E-value=0.00029 Score=52.79 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=43.1
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ ...|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 46 F~~~G~i~~v~----i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 46 FSPFGQIMEIR----VFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp HHHHSCEEEEE----EETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHhcCCeEEEE----EeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 56789999986 3343 457999999999999999 899999999999998554
No 45
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.14 E-value=0.00034 Score=53.88 Aligned_cols=54 Identities=11% Similarity=0.017 Sum_probs=43.5
Q ss_pred Cccccc---ccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQ---LSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGk---I~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||. |.+|.. +.+..++ ...|+|+|+++..++.||-|+|..|.|..|.|..+
T Consensus 38 F~~~G~~~~v~~v~i---~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 38 LSDCTIHDGVAGVHF---IYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKS 95 (118)
T ss_dssp TTTSCBTTGGGGEEE---EECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred HHHcCCccCceeEEE---EECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 777999 788863 2222343 44899999999999999999999999999999754
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.14 E-value=0.00029 Score=51.57 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=44.0
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ .+ ....|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 23 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 23 CSNVGPVINLK----MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp HHTTSCEEEEE----CCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHhcCCEEEEE----EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 56789999986 3333 23 3458999999999999999 799999999999998553
No 47
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.0005 Score=49.85 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=41.9
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. .++ .|+|+|+++..++.|+ .|||..|.|..|.|..+.
T Consensus 31 F~~~G~v~~v~~----~~~-----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 31 FEEYGPVIECDI----VKD-----YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp HHTTSCCCEEEE----CSS-----EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred HHhcCCeEEEEE----ECC-----EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 566899999863 333 8999999999999999 599999999999998654
No 48
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.12 E-value=0.00018 Score=54.19 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=44.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.+++.....|+|+|.++..+..|+- |||..|.|..|.|..+
T Consensus 29 F~~~G~v~~v~----i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 29 FGKYGPIRQIR----VGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp HHTTSCEEEEE----EECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred HHhcCCeEEEE----EeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 56789999986 44555445689999999999999998 9999999999999754
No 49
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.08 E-value=0.00039 Score=52.99 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=44.4
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++ .+. ...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 57 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 57 FSSCGSINRIT----ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTTSCEEEEE----EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred HHhcCCEEEEE----EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 56789999886 3332 333 458999999999999999999999999999998654
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.08 E-value=0.00039 Score=49.04 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=43.7
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.++. +.++ .+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 22 f~~~G~i~~~~----i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 22 FKDFPSYLSGH----VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp HTTSTTEEEEE----EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhcCCeeEEE----EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 56789999886 3333 233 4579999999999999998 89999999999997553
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00037 Score=51.19 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=43.5
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|... .+..+. ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 38 F~~~G~i~~v~i~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 38 CKAHGTVKDLRLV---TNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp HTTTSCEEEEEEE---ECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred HHhCCCeEEEEEE---ECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 6678999998632 222233 358999999999999999 89999999999999754
No 52
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0008 Score=50.79 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=44.4
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ .+.. ..|+|+|+++..++.||-++|..|.|..|.|..+.
T Consensus 48 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 48 YEQWGKLTDCV----VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HTSSCCCSEEE----EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred HHhcCCEEEEE----EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 67799999986 3333 2333 48999999999999999999999999999998654
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00024 Score=52.66 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.3
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|. +..+ .+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 44 f~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 44 FAEYGEIKNIH----LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp HGGGSCEEEEE----EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred HhccCCeEEEE----EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 67789999986 3333 233 4579999999999999997 9999999999999754
No 54
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.05 E-value=0.00061 Score=51.48 Aligned_cols=52 Identities=17% Similarity=0.347 Sum_probs=42.8
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~ 56 (244)
|+-||.|.+|. +.++ .+ ....|+|+|+++..++.|+- |||..|.|..|.|..
T Consensus 61 F~~~G~i~~~~----i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 61 FLPFGNVISAK----VFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp TTTSCEEEEEE----ECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred HHhcCCEEEEE----EEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 78899999986 3333 23 34589999999999999997 999999999999864
No 55
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.05 E-value=0.00064 Score=52.13 Aligned_cols=56 Identities=18% Similarity=0.352 Sum_probs=44.6
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|... .+..+. ...|+|+|+++..|+.|+- |||..|.|..|.|..+..
T Consensus 28 F~~~G~i~~v~i~---~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 28 FGKHGPISEVLLI---KDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp HHTSSCCSEEEEE---CSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred HHhcCCEEEEEEE---ECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 6779999998732 222333 4589999999999999995 999999999999986543
No 56
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.00043 Score=50.01 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=42.1
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|.. .++ .|+|+|+++..++.|+- |+|..|.|..|.|..+..
T Consensus 30 F~~~G~v~~~~~----~~~-----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 30 FERRGRVIECDV----VKD-----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp HHHHSCEEEEEE----CSS-----CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHcCCCEEEEEE----ECC-----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 556899998863 333 79999999999999997 999999999999986543
No 57
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.00093 Score=49.94 Aligned_cols=54 Identities=20% Similarity=0.089 Sum_probs=43.3
Q ss_pred Ccccccccc-eecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSK-ILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~s-i~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+ |.. +.+..+. ...|+|+|+++..++.||-++|..|.|..|.|...
T Consensus 36 F~~~G~v~~~v~i---~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 36 FSGLEIVPNGMTL---PVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp TTTCCEEEEEEEC---CBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred HHhcCCcceeEEE---EECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 788999987 642 2233343 34799999999999999999999999999999754
No 58
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.01 E-value=0.0005 Score=51.33 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=43.4
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +..+ .+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 47 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 47 FCDYGEIKNIH----LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp HGGGSCEEEEE----CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred HHhcCCEEEEE----EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 67789999986 3333 233 4589999999999999998 9999999999999754
No 59
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00042 Score=51.20 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=43.8
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ..+ .+.. ..|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 36 F~~~G~i~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 36 FLQAGPVVNTHM----PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp HHTTSCEEEEEC----CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred HHhcCCeEEEEE----EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 567899998863 332 3333 379999999999999998 89999999999998653
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.99 E-value=0.00043 Score=52.49 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=43.7
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++ .+. ...|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 47 F~~~G~i~~v~----i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 47 FEPFGRIESIQ----LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp HTTTSCEEEEE----EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred HHhcCCeEEEE----EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 67799999986 3333 233 348999999999999999 599999999999998553
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.00082 Score=50.32 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=44.0
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. +.+.++. ...|+|+|+++..++.|+. |+|..|.|..|.|..+.
T Consensus 36 f~~~G~i~~~~i---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 36 FSMAGVVVRADI---LEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp HTTTSCEEEEEE---EECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHhcCCeEEEEE---EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 667899998863 2222333 3589999999999999998 99999999999998543
No 62
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.0004 Score=52.18 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=43.3
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecC-----ceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVD-----QSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d-----~~V~Vt~~~~ 59 (244)
|+=||.|.++.. ..+ ..|+|+|+++..++.||- |||..|.| ..|.|..+..
T Consensus 36 F~~~G~i~~~~i----~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 36 MREAGDVCYADV----YRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp HGGGSCEEEEEE----ETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred HHhcCCEeEEEE----ecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 677899999863 333 589999999999999998 99999999 9999986643
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.98 E-value=0.00047 Score=50.72 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=39.7
Q ss_pred Ccccc-cccceecccccccCC--CC-ceEEEEEEeCCchhhhhh-hc-cCceecCceEEEecC
Q 048268 1 MSLWG-QLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAV-LL-SGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcG-kI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TAL-LL-nGAtL~d~~V~Vt~~ 57 (244)
|+=|| .|.+|. +.++. +. ..-|+|+|+++..|+.|| .| ++..|.|..|.|.-+
T Consensus 22 F~~~G~~v~~v~----i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 22 LQSHGVQAREVR----LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp HHHHTCCCSBCC----SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred HHHhCCEeEEEE----EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 45578 899886 44432 33 346999999999999998 34 556799999999743
No 64
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00087 Score=51.77 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=45.3
Q ss_pred CcccccccceecccccccC-CCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD-NERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDPDY 60 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~-~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~~~ 60 (244)
|+=||.|.+|... .+. +.....|+|+|+++..++.|+ .|+|..|.|..|.|......
T Consensus 21 f~~~G~i~~v~i~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 21 FQVGGPIANIKIM---IDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp HGGGSCEEEEEEE---CCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHhcCCeEEEEEE---ECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6778999998732 222 233457999999999999999 99999999999999866443
No 65
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.97 E-value=0.00047 Score=51.87 Aligned_cols=54 Identities=15% Similarity=-0.036 Sum_probs=43.0
Q ss_pred Cccccc---ccceecccccccCCC-CceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQ---LSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGk---I~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||. |.+|.. +.+..+ ....|+|+|+++..++.||-|+|..|+|..|.|..+
T Consensus 32 F~~~g~~~~v~~v~i---~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 32 FSDCRIRNGENGIHF---LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 89 (107)
T ss_dssp TTTSCBTTTTTTEEC---CCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred HHhcCCcCCcceEEE---EECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence 677888 788863 222223 345899999999999999999999999999999754
No 66
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.97 E-value=0.00038 Score=53.20 Aligned_cols=54 Identities=17% Similarity=0.261 Sum_probs=43.6
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +..+ .+. ...|+|+|+++..++.|| .|||..|.|..|.|..+.
T Consensus 43 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 43 FAEYGEIKNIH----LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp HHTTSCEEEEE----CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHhcCCeEEEE----EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 56789999886 3333 333 448999999999999999 599999999999998553
No 67
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.96 E-value=0.00057 Score=50.64 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=42.9
Q ss_pred CcccccccceecccccccC---CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD---NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~---~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+-|| |.+|.. .++ .+. ...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 40 F~~~G-i~~v~i----~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 40 FRGLN-ISAVRL----PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp SCSSC-EEEEEC----SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred HHhcC-CeEEEE----EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence 67789 988863 332 233 348999999999999999999999999999997553
No 68
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.96 E-value=0.0011 Score=49.83 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=41.6
Q ss_pred CcccccccceecccccccCCCCc-eEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=|| |.+|.. +.+.++++ -.|+|+|+++..++.||-|||..|.+..|.|....
T Consensus 36 F~~~G-~~~v~i---~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 36 FSPLN-PMRVHI---EIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SCSCC-CSEEEE---EESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred HHHcC-ceEEEE---EECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 67788 446652 22333443 37999999999999999999999999999997543
No 69
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.00084 Score=51.81 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=42.8
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-| +|.+|.. +.+.+++ ...|+|+|+++..++.||.|||..|+|..|.|.++
T Consensus 37 F~~~-~v~~v~i---~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 37 FHGL-RVDAVHL---LKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp TTTS-CCCEEEE---CCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred hccC-CeeEEEE---EECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 6777 7888863 2233343 45899999999999999999999999999999765
No 70
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.95 E-value=0.00059 Score=54.79 Aligned_cols=54 Identities=11% Similarity=-0.011 Sum_probs=44.0
Q ss_pred Cccccc---ccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQ---LSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGk---I~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||. |.+|.. +.+..++ ...|+|+|+++..++.||-|||..|.|..|.|..+
T Consensus 65 F~~~G~v~~v~~v~i---~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 65 LSDCTIHDGAAGVHF---IYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp TTTCCCSSSSTTEEE---EECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred HHHhCCcCceeEEEE---EECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 778999 788863 2232344 34899999999999999999999999999999754
No 71
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.93 E-value=0.0004 Score=51.50 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=43.1
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|.. +.+..+. ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 50 F~~~G~i~~v~i---~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 50 FAEFGTLKKAAV---HYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp HHTTSCEEEEEE---EECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHhcCCeEEEEE---EECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 566899988863 2222333 4489999999999999999 8999999999999754
No 72
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.91 E-value=0.00055 Score=50.75 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=42.3
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|.. .+. .|+|+|+++..++.|+- |+|..|.|..|.|..+..
T Consensus 32 F~~~G~i~~v~~----~~~-----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 32 FSQFGKLERVKK----LKD-----YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp HHHHSCEEEEEE----CSS-----CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHhcCCEEEEEE----ECC-----EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 566899999863 332 79999999999999998 899999999999986643
No 73
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.91 E-value=0.00061 Score=50.04 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=42.1
Q ss_pred Ccccccccc--------eeccccccc--CCCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSK--------ILRNSFPLC--DNER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~s--------i~~~~el~~--~~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+ |. +.. ..+. ...|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 34 F~~~G~i~~~~~~~~~~v~----i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 34 FKQIGIIKTNKKTGQPMIN----LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HTTTSCBCEETTTTEESEE----EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHhCCEeeccccccccEE----EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 567899988 64 333 3344 348999999999999999 59999999999999743
No 74
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.91 E-value=0.00059 Score=52.30 Aligned_cols=53 Identities=23% Similarity=0.428 Sum_probs=43.4
Q ss_pred CcccccccceecccccccCC--CCc-eEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ERS-QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++. +.++. +.+ .-|+|+|+++..|+.|+- |||..|.|..|.|..+
T Consensus 27 F~~~G~i~~v~----i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 27 CRKYGEVEEVE----ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp HTTTSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHhcCCeeEEE----EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 67799999986 33332 333 479999999999999995 9999999999999754
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.00044 Score=50.90 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=43.7
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. .++ .+. ...|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 29 f~~~G~i~~~~i----~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 29 FSEVGPVVSFRL----VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHTTSCCSEEEE----EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred HHhcCCeeEEEE----EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 567899999863 333 333 458999999999999999 599999999999998553
No 76
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.89 E-value=0.00062 Score=53.47 Aligned_cols=53 Identities=19% Similarity=0.362 Sum_probs=43.5
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|. +.++ .+. ...|+|+|+++..++.||- |||..|.|..|.|..+
T Consensus 67 F~~~G~I~~v~----i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 67 FSKYGPIADVS----IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp HTTTSCEEEEE----EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred HHhcCCeEEEE----EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 67799999986 3333 233 3489999999999999998 9999999999999754
No 77
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.89 E-value=0.00043 Score=51.56 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=42.9
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhh-hccCceecC-ceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAV-LLSGATIVD-QSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d-~~V~Vt~~ 57 (244)
|+=||.|.+|. +.++. +. -.-|+|+|+++..++.|+ .|||..|.| ..|.|..+
T Consensus 33 F~~~G~i~~v~----i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 33 FSKAGKVVNME----FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp HHTTSCEEEEE----CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred HHhcCCEeEEE----EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 56789999986 33332 33 347999999999999999 699999999 99999754
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.89 E-value=0.001 Score=48.10 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=42.7
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++... .-+..+. ...|+|+|+++..++.||- |||..|.|..|.|..+
T Consensus 36 F~~~G~i~~~~~~--~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 36 FYGYQVIPGSVCL--KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp TTTSCBCTTCCEE--EECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred HHhcCCccceEEE--EeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 6778999877531 1122232 4579999999999999997 9999999999999754
No 79
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.88 E-value=0.00083 Score=49.33 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=43.3
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++ ...|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 36 F~~~G~i~~v~----~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 36 FEKYGKAGEVF----IHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp TSTTCCCSEEE----EETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred HhhcCCeEEEE----EecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 77899999986 3333 348999999999999999 899999999999998653
No 80
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.88 E-value=0.00082 Score=50.40 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=42.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ....|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 49 F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 49 FSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred HHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 667899999863 2457999999999999999 899999999999998653
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.00044 Score=52.49 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=44.1
Q ss_pred CcccccccceecccccccCC-C-CceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN-E-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~-~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. .++. + .-..|+|+|+++..++.||-++|..|.|..|.|....
T Consensus 32 F~~~G~v~~v~i----~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 32 LEDKGQVLNIQM----RRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp HHTSSCEEEEEE----ECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred HhhcCCEEEEEE----EECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 677999999973 3332 3 3457999999999999999999999999999997543
No 82
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0015 Score=48.25 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=43.6
Q ss_pred CcccccccceecccccccC---CC-CceEEEEEEeCCchhhhhhh-c-cCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD---NE-RSQIARVVFKDPQGAETAVL-L-SGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~---~~-~sq~A~VtFe~~~Aa~TALL-L-nGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ .+ ....|+|+|+++..++.||- | +|..|.|..|.|..+.
T Consensus 36 F~~~G~i~~v~----i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 36 FSTFGELKTVR----LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp HHTTSCEEEEE----CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred HHccCCeEEEE----EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 66789999986 3333 33 34589999999999999995 6 8999999999998654
No 83
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.86 E-value=0.00062 Score=52.42 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=42.5
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhh-hccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~ 56 (244)
|+-+|.|.+|. +.++ .+ ....|+|+|+++..++.|| .|+|..|.|..|.|..
T Consensus 84 f~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 84 FIPFGDITDIQ----IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp HGGGSCEEEEE----CCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred HHhcCCEEEEE----EeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 66789999986 3333 23 3458999999999999999 6999999999999863
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.00091 Score=48.28 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=42.2
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|.. . ...|+|+|+++..++.|+ .|+|..|.|..|.|..+..
T Consensus 29 F~~~G~i~~v~~----~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 29 FEQYGKVLECDI----I-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp HHTSSCEEEEEE----E-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred HHhCCCEEEEEE----E-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 567899999863 3 237999999999999999 6999999999999986543
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.82 E-value=0.00094 Score=48.70 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=43.0
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++... ..+..+. ...|+|+|+++..++.|+ -|+|..|.|..|.|..+
T Consensus 36 F~~~G~v~~~~~~--~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 36 FYGYQVIPGSVCL--KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp TTTSCCCTTTCEE--EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred HHHcCCccceEEE--EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 6778999876421 1122332 468999999999999999 89999999999999754
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.80 E-value=0.00076 Score=53.58 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|. +..+. +. ...|+|+|+++..++.||. |+|..|.|..|.|..+..
T Consensus 60 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 60 FSKSGDIKKII----MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HGGGSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred HHhcCCeEEEE----EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 67799999986 33332 33 3589999999999999998 899999999999986654
No 87
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.00097 Score=49.99 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=44.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++...+.+. .+.....|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 46 f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 46 FARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp THHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred HHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 66789997665433333 22334589999999999999995 89999999999998654
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=0.001 Score=47.92 Aligned_cols=54 Identities=7% Similarity=0.000 Sum_probs=41.4
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=| .|.+|.. +.+..+. ...|+|+|+++..++.||-|+|..|.|..|.|..+.
T Consensus 31 F~~~-~i~~v~i---~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 31 LAPL-KPVAIRI---VRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp HTTS-CCSEEEE---EECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred HhhC-CceEEEE---EECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 4445 6777752 2223333 458999999999999999999999999999997553
No 89
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.0018 Score=47.36 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=42.3
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. .+ ....|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 34 F~~~G~i~~v~i----~~---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 34 FSPFGNIIDLSM----DP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp HTTTSCEEEEEE----ET---TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred HhhCCCEEEEEe----cC---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 677899999863 22 2237999999999999999 899999999999998553
No 90
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.78 E-value=0.001 Score=51.67 Aligned_cols=55 Identities=20% Similarity=0.449 Sum_probs=44.2
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|. +.++ .+. ...|+|+|+++..++.|+- |||..|.|..|.|..+..
T Consensus 63 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 63 FERYGPIESVK----IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp HHHHSCEEEEE----EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred HHhcCCeEEEE----EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 56689999986 3333 233 3479999999999999998 999999999999986543
No 91
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.78 E-value=0.00065 Score=51.90 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=41.8
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCce-----EEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQS-----VTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~-----V~Vt~~~ 58 (244)
|+-||.|.+|.. ..+ ..|+|+|+++..++.||- |||..|.|.. |.|....
T Consensus 37 F~~~G~v~~~~i----~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 37 MREAGDVCYADV----YRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp HGGGSCEEEEEE----CTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred HHhcCCeEEEEE----ecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 677999999863 333 679999999999999998 9999999988 7776543
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.00099 Score=50.59 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=43.5
Q ss_pred Ccccccc-cceecccccccCCC-CceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQL-SKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI-~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.| .+|.. +.+..+ ....|+|+|+++..++.||-++|..|.|..|.|..+
T Consensus 36 F~~~g~v~~~v~i---~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 36 LEGIPVDENAVHV---LVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp TTTSCCCSTTEEE---CCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred HHhCCCcCCeEEE---EECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 7778999 78763 222233 345799999999999999999999999999999754
No 93
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.77 E-value=0.00083 Score=49.82 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=41.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|... ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 44 F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 44 FSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp HGGGSCEEEEEEC---------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred HHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 6778999998642 3579999999999999998 9999999999999754
No 94
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=96.76 E-value=0.0015 Score=48.22 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=43.4
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecC---ceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVD---QSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d---~~V~Vt~~~ 58 (244)
|+=||.|.+|... .+.++. ...|+|+|+++..++.|+- |+|..|.| ..|.|..+.
T Consensus 36 F~~~G~i~~v~i~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 36 FQPFGVIDECTVL---RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp HTTTSCEEEEEEE---ECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred HHhcCCeEEEEEE---ECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 6778999998632 222333 3589999999999999995 99999998 899997554
No 95
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.0023 Score=47.93 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=42.8
Q ss_pred Ccccccccc--------eeccccccc--CCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSK--------ILRNSFPLC--DNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~s--------i~~~~el~~--~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+ |. +.. ..+. ...|+|+|+++..|+.||- |+|..|.|..|.|..+..
T Consensus 36 F~~~G~i~~~~~~~~~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 36 FKQCGVVKMNKRTGQPMIH----IYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HTTTSCBCBCSSSCCBSEE----CCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred HHhcCCEeEccccCccCEE----EEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 566888883 54 333 3333 3489999999999999996 899999999999986543
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.72 E-value=0.00028 Score=51.34 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=42.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|. +.+.+.....|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 33 f~~~G~i~~v~----i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 33 FSRFGQILDIL----VSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp HGGGSCEEEEE----CCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHhCCCEEEEE----EEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999986 33322223479999999999999996 8999999999999754
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.72 E-value=0.0014 Score=49.53 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=44.0
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++. +. ...|+|+|+++..++.||-.+|..|.|..|.|..+.
T Consensus 46 F~~~G~i~~v~----i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 46 FGQFGEVKECL----VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp HTTTSCEEEEE----ECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred HHccCCeEEEE----EEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 67899999986 33332 33 348999999999999999999999999999997553
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.71 E-value=0.00068 Score=49.85 Aligned_cols=53 Identities=34% Similarity=0.492 Sum_probs=44.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=||.|.+|. +.++ ....|+|+|+++..++.|+- |+|..|.|..|.|..+..
T Consensus 21 F~~~G~i~~v~----i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 21 FSYYGPLRTVW----IARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp HHHHCCCSEEE----EESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred HHhcCCeEEEE----EeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 56689999986 3344 45589999999999999998 899999999999986543
No 99
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.71 E-value=0.00065 Score=53.86 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=43.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
||=||.|.+|.. .+.+..-..|+|+|+++..|+.|+ -|||..|.|..|.|.-+
T Consensus 54 F~~~G~I~~v~i----~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 54 ASSQGDILDIVV----DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp HHHHSCEEEEEE----CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred hccCCCeEEEEe----ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 677999988863 333333447999999999999999 69999999999999754
No 100
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.0028 Score=46.63 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=42.9
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhhccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|.. ..+ .+.+ ..|+|+|+++..++.||- ++..|.|..|.|..+..
T Consensus 36 F~~~G~i~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 36 FSTFGEVLMVQV----KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp HGGGSCEEEEEE----EECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCT
T ss_pred HHhcCCeEEEEE----EecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCC
Confidence 677999999863 333 3444 479999999999999998 78899999999986543
No 101
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.64 E-value=0.0018 Score=47.81 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=43.2
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhhh-ccCcee---cCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAVL-LSGATI---VDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL---~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++ .+ ....|+|+|+++..++.|+- |+|..| .|..|.|..+.
T Consensus 34 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 34 FEEFGKIYELT----VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp HHHHSCCCEEE----CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred HHhcCCeeEEE----EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 56689999996 3333 22 33589999999999999995 999998 88999998654
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.00094 Score=48.85 Aligned_cols=50 Identities=14% Similarity=0.323 Sum_probs=41.9
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceec--CceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIV--DQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~--d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.+. ...|+|+|+++..++.|+- |+|..|. |..|.|..+
T Consensus 38 F~~~G~v~~v~----~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 38 FDRFGSIRTID----HVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp HHTTSCEEEEE----ECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred HHhcCCeeEEE----EeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 56789999986 3333 2379999999999999998 9999999 999999754
No 103
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.63 E-value=0.0012 Score=52.10 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=43.8
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++ .+. ...|+|+|+++..++.||- |||..|.|..|.|..+.
T Consensus 91 F~~~G~v~~~~----i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 91 FEKYGRVGDVY----IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp HHHHSCEEEEE----CCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred HHhcCCeEEEE----EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56789999986 3333 333 3479999999999999995 99999999999998654
No 104
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.62 E-value=0.0011 Score=51.49 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=42.6
Q ss_pred Ccccc-cccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWG-QLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcG-kI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-|| .|..+... .+ .....|+|+|+++..++.|+ .|||..|.|..|.|..+.
T Consensus 49 F~~~G~~v~~v~i~---~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 49 ARENSLETTFSSVN---TR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HHHHTCCCSEEECS---SC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred HHHhCCeeEEEEEE---cC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 56789 89988642 11 23447999999999999999 699999999999998653
No 105
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.62 E-value=0.001 Score=47.20 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=37.0
Q ss_pred cccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEec
Q 048268 6 QLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 6 kI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
.|.++. +.++ ...|+|+|+++..++.|+.|||..|.|..|.|..
T Consensus 43 ~v~~~~----~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 43 PVLAVQ----INQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SEEEEE----ECSS---SSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred cceEEE----ecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 777775 3333 4579999999999999999999999999999963
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.00045 Score=49.17 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=41.4
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEe
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIE 55 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt 55 (244)
|+-||.|.++... .-...+. ..-|+|+|+++..++.|+- |||..|.|..+.+.
T Consensus 26 f~~~G~i~~~~i~--~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 26 CQPYGKIVSTKAI--LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp STTTSCEEEEEEE--CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred HHhcCCeEEEEEE--ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 6789999998632 1112333 3479999999999999998 99999999988775
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.60 E-value=0.0015 Score=51.46 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=43.8
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ..+ .+.. ..|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 68 F~~~G~i~~v~i----~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 68 FEKYGRVGDVYI----PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp HGGGSCCSEEEC----CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred HHhcCCEEEEEE----EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 677999999863 332 3333 379999999999999995 99999999999998654
No 108
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0007 Score=49.69 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=41.6
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|... ...|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 32 F~~~G~v~~v~i~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 32 FSPYGHIMQINIK---------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp HTTTCCCCEEEEE---------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred HHhcCCEEEEEEe---------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 6778999998642 3479999999999999998 8999999999999754
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.004 Score=45.66 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=39.9
Q ss_pred CcccccccceecccccccCCC-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|. | +....+ ....|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 36 F~~~g~v~-~-----~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 36 FEKATFIK-V-----PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CSSCSEEE-C-----CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred HHhCCEEE-E-----EECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 55677762 2 222233 34589999999999999998 99999999999998654
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.003 Score=46.86 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=43.2
Q ss_pred CcccccccceecccccccCC--C-CceEEEEEEeCCchhhhhhh-cc------CceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--E-RSQIARVVFKDPQGAETAVL-LS------GATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~-~sq~A~VtFe~~~Aa~TALL-Ln------GAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++. + ....|+|+|+++..++.||- |+ |..|.|..|.|..+.
T Consensus 36 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 36 LQQFGDLKYVR----VVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp HHTTSCEEEEE----CCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred HHhcCCeEEEE----EEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 56689998886 33332 2 34589999999999999996 88 999999999998654
No 111
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.56 E-value=0.0019 Score=52.36 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=44.1
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++. +.++ ++. ...|+|+|+++..+..|+- |+|..|.|..|.|..+.
T Consensus 146 f~~~G~v~~v~----i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 146 FEAFGKIKSAT----LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp HTTSSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred HhccCCeeEEE----EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 66789999986 3333 333 4579999999999999999 99999999999998554
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0017 Score=44.95 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=41.6
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
|+=||.|.++.. .++ ++. ...|+|+|+++..++.|+-..+..|.|..|.|..
T Consensus 21 F~~~G~v~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 75 (77)
T 1uaw_A 21 FGQFGEVKECLV----MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 75 (77)
T ss_dssp HTTTSCCCCEEE----ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEE
T ss_pred HHhcCCEEEEEE----ecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEe
Confidence 567899998863 333 233 4589999999999999998777999999999864
No 113
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.003 Score=47.53 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=42.5
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ .+.. ..|+|+|+++..++.||-..+..|.|..|.|..+.
T Consensus 38 F~~~G~i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 38 FEGFGDIEEAV----VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAY 94 (116)
T ss_dssp HHTTSCEEEEE----ESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEEST
T ss_pred HHhCCCeeEEE----EEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEcc
Confidence 66789999986 3333 2333 48999999999999999765559999999998664
No 114
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.52 E-value=0.0015 Score=49.65 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=41.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. |.++ ...|+|+|+++..|+.|+- |||..|.|..|.|.-+.
T Consensus 31 F~~~G~i~~v~----i~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 31 FSRFGSLGRVL----LPEG---GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp HHTTSCEEEEE----CCSS---SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred HHhcCCEEEEE----EeCC---CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 66789999886 3332 2369999999999999995 99999999999997543
No 115
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.0027 Score=46.50 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=40.7
Q ss_pred Cccc--ccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLW--GQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFc--GkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=| |.|.+|.. .+ ..|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 36 F~~~g~g~v~~~~~----~~-----g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 36 FNNIKPGAVERVKK----IR-----DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp HHTTSTTCEEEEEE----CS-----SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred HHhcCCcceEEEEE----eC-----CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4556 88888863 22 289999999999999998 99999999999998554
No 116
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.50 E-value=0.0019 Score=48.97 Aligned_cols=52 Identities=29% Similarity=0.457 Sum_probs=42.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +. +...-..|+|+|+++..|+.|+ -|||..|.|..|.|..+
T Consensus 47 f~~~G~v~~v~----i~-~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a 99 (112)
T 2dit_A 47 CSKFGQIRKLL----LF-DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 99 (112)
T ss_dssp GGGTSCCSEEE----EE-TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred HHccCCEeEEE----Ee-cCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 66789999985 32 2224457999999999999999 79999999999999854
No 117
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=47.26 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=41.7
Q ss_pred Cccccccc-ceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCce----EEEecC
Q 048268 1 MSLWGQLS-KILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQS----VTIELD 57 (244)
Q Consensus 1 FSFcGkI~-si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~----V~Vt~~ 57 (244)
|+=||.|. +|. +.++ .+. ..-|+|+|+++..++.|+- |||..|.|.. |.|..+
T Consensus 30 F~~~G~i~~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 30 FATMGETVMSVK----IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp HHHTTCCCCEEE----EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEET
T ss_pred HHHhCCcceEEE----EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeec
Confidence 55689888 875 3333 233 3579999999999999998 9999999999 888654
No 118
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0019 Score=49.79 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=42.6
Q ss_pred CcccccccceecccccccC--CCCc-eEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++.. .++ ++.. ..|+|+|+++..|..|+- |+|..|.|..|.|.-+
T Consensus 108 f~~~G~i~~~~i----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 108 FKDFPSYLSGHV----MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp HTTSTTEEEEEE----EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred HhccCCeeEEEE----EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 566899998863 333 3333 379999999999999997 9999999999999743
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0018 Score=47.04 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=40.4
Q ss_pred CcccccccceecccccccCCC-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|..+ ...+ ....|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 37 F~~~g~v~~~-------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 37 FEDALEIRLV-------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp HCSEEEECCE-------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred HhhCCcEEEe-------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4557777665 1222 34589999999999999999 99999999999998653
No 120
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.45 E-value=0.0012 Score=52.05 Aligned_cols=51 Identities=31% Similarity=0.470 Sum_probs=42.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.++ ...-|+|+|.++..++.|+- |||..|.|..|.|..+
T Consensus 94 F~~~G~i~~v~----i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 94 FGYYGPLRSVW----VARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp HHHHSCEEEEE----ECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred HHhhCCEEEEE----EeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 56689999986 3333 34589999999999999997 9999999999999754
No 121
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.44 E-value=0.002 Score=53.99 Aligned_cols=57 Identities=21% Similarity=0.186 Sum_probs=46.5
Q ss_pred CcccccccceecccccccC-CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCCCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD-NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPDYK 61 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~-~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~~~ 61 (244)
|+=||.|.+|. |.++ ++. ...|+|+|+++..|+.||-+.|.+|.|..|.|....+|.
T Consensus 130 F~~~G~v~~v~----i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 130 LEDKGQVLNIQ----MRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp HTTSCCEEEEE----EEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred HhcCCCEEEEE----EEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 67899999996 3332 233 458999999999999999988889999999999877764
No 122
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.42 E-value=0.0023 Score=54.73 Aligned_cols=53 Identities=26% Similarity=0.348 Sum_probs=44.8
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.+.+..-..|+|+|+++..++.|+ .|+|..|.|..|.|..+
T Consensus 34 F~~~G~i~~v~----~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 34 FSQFGQILDIL----VSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred HhccCCeEEEE----EcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 67799999986 4444444468999999999999999 99999999999999754
No 123
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.42 E-value=0.0011 Score=46.95 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=40.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-c-cCceecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-L-SGATIVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-L-nGAtL~d~~V~Vt~ 56 (244)
|+-||.|.+|.. .++ ...|+|+|+++..++.|+- | +|..|.|..|.|..
T Consensus 33 f~~~G~i~~~~~----~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 33 FYQFGEIRTITV----VQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp HHTTSCEEEEEE----EGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred HHhCCCEeEEEE----ECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 567899998863 332 3479999999999999996 5 99999999998864
No 124
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.41 E-value=0.0021 Score=50.08 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=43.8
Q ss_pred CcccccccceecccccccC--CC-CceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NE-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++.. ..+ .+ ....|+|+|+++.++..|+-|+|..|.|..|.|..+.
T Consensus 108 F~~~G~i~~~~i----~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 108 FSQWGTIIDAQL----MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHTTSCCSEEEC----CCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred HHhCccEEEEEE----EEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 566899999863 333 23 3358999999999999999999999999999998653
No 125
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.36 E-value=0.0025 Score=49.17 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=43.7
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. .++ .+. ...|+|+|+++..++.|+- |+|..|.|..|.|....
T Consensus 23 f~~~G~i~~v~~----~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 23 FGSIGEIESCKL----VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp HHTTSCEEEEEE----EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhcCCeEEEEE----EeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 567899999863 333 333 3579999999999999996 99999999999998654
No 126
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.34 E-value=0.0035 Score=47.89 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=43.0
Q ss_pred CcccccccceecccccccC----CCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD----NERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~----~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||+|.++.. .++ +.....++|+|+++..|..|+- |||..+.|..|.|.-+
T Consensus 34 f~~~G~V~~v~i----~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 34 CEKYGKVGKCVI----FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFY 91 (105)
T ss_dssp GGGGSCEEEEEE----EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHhcCCEEEEEE----ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 677899999963 332 1234689999999999999995 9999999999999755
No 127
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=96.33 E-value=0.0027 Score=46.65 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=42.0
Q ss_pred CcccccccceecccccccCCC-CceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.++... .+..+ ....|+|+|+++..++.|+- +|..|.|..|.|..+
T Consensus 30 F~~~G~i~~v~i~---~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 30 FARYGSVKEVKII---TDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp HGGGSCEEEEEEE---ECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred HHhCCCeEEEEEE---ECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6779999998632 22233 34589999999999999999 999999999998643
No 128
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.31 E-value=0.0019 Score=60.82 Aligned_cols=54 Identities=13% Similarity=0.318 Sum_probs=44.3
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.+ +.+ .+. -..|||+|+++..|..|| .|||..|.|..|.|..+.
T Consensus 123 F~~~G~I~~v~i----~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 123 FEVYGPIKRIHM----VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred HHHcCCeeEEEe----eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 778999999963 332 233 457999999999999999 899999999999997543
No 129
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.31 E-value=0.0028 Score=48.82 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=41.3
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++. +..+. +.|||++.++|..|+=|||..|.|..|+|....
T Consensus 36 F~~~G~Vi~vr----~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 36 FASFGEVILIR----FVEDK-----MWVTFLEGSSALNVLSLNGKELLNRTITIALKS 84 (91)
T ss_dssp HHTTCCEEEEE----ECSSS-----EEEEESSHHHHHHGGGGTTCEETTEEEEEEECC
T ss_pred HHhCCCeEEEE----EecCC-----EEEEECChHHHHHHHhcCCeEeCCeEEEEEeCC
Confidence 56689988886 33333 899999999999999999999999999998553
No 130
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.30 E-value=0.0025 Score=51.39 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=43.3
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|.. ..+ .+. ...|+|+|+++..++.||- |||..|.|..|.|..+
T Consensus 93 F~~~G~i~~v~i----~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 93 FCDYGEIKNIHL----NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp HGGGSCEEEEEE----EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred hhcCCCEEEEEE----EecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 667899999863 332 333 3589999999999999996 9999999999999754
No 131
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.29 E-value=0.003 Score=49.34 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=42.5
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++.. .++ .+. ...|+|+|+++..+..|+- |||..|.|..|.|..+
T Consensus 115 f~~~G~v~~v~i----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 115 LTSFGPLKAFNL----VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHTTSCEEEEEE----EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHhcCCceEEEE----EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 556899988863 333 333 3479999999999999998 9999999999999743
No 132
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.28 E-value=0.0027 Score=50.70 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=43.9
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. ..+ ++. ...|+|+|+++..|..||.++|..|.|..|.|..+.
T Consensus 125 F~~~G~i~~v~i----~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 125 FEQYGKIEVIEI----MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp HTTTSCEEEEEE----EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred HhcCCCeEEEEE----eecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 677899999863 333 233 346999999999999999999999999999998653
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.24 E-value=0.0037 Score=48.51 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=43.3
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. .++ .+. ...|+|+|+++..++.|+ .|+|..|.|..|.|....
T Consensus 24 f~~~G~i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 24 FRAIGPINTCRI----MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp HHTTSCEEEEEC----CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhcCCeeEEEE----EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 567899999863 332 232 347999999999999999 599999999999998654
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.23 E-value=0.0027 Score=54.61 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=43.4
Q ss_pred Ccccc--cccceecccccccC--CCCc-eEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWG--QLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcG--kI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=|| +|.+|. +.++ .+.+ ..|+|+|++...++.||- |||..|.|..|.|..+
T Consensus 89 F~~~G~~~v~~v~----i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 89 VHSLGVNDILEIK----FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp HHTTTCCCEEEEE----EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred HHHHCCcceEEEE----EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 66789 899986 3333 3433 479999999999999998 9999999999999854
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.23 E-value=0.0015 Score=47.95 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=41.1
Q ss_pred Ccccccccceeccccccc-CCC-CceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLC-DNE-RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~-~~~-~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+.. +.+ ..+ ....|+|+|+++..++.||-|||..|.|..|.|..+.
T Consensus 38 F~~~G~v~~~~----~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 38 ISELFAKNDLA----VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp HHHHHHHHTCC----CCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred HHHhCCcceEE----EecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45578887721 222 222 2347999999999999999999999999999998653
No 136
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=96.18 E-value=0.0037 Score=53.69 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=46.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. +.+..+....|+|+|.++..|+.||-|+|..|.|..|.|....
T Consensus 62 F~~~G~i~~v~i---~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 62 FKHCGPIIHVDV---ADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp HGGGSCEEEEEE---EECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred HHhcCCeEEEEE---EECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 677999999963 2223445689999999999999999999999999999998764
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.18 E-value=0.0023 Score=53.23 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=43.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++.. +.+.+.....|+|+|+++..|+.||- |||..|.|..|.|..+
T Consensus 124 F~~~G~i~~~~i---~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 124 FSAFGNILSCKV---VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp HGGGSCEEEEEE---EEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HhhcCCeEEEEe---eccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 566899998863 23333344579999999999999994 9999999999999755
No 138
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.14 E-value=0.0027 Score=48.41 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=42.2
Q ss_pred CcccccccceecccccccCC-----CCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDN-----ERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~-----~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
||=||+|.+|.. .++. .....+||+|+++..|..|+ -|||..+.|..|.|.-+
T Consensus 36 f~k~G~V~~v~i----~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 36 CSKYGLVKSIEI----PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC 94 (105)
T ss_dssp HHTTSCEEEEEC----CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HHccCCEEEEEE----eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEe
Confidence 455899999973 3332 12358999999999999998 79999999999999743
No 139
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.10 E-value=0.0031 Score=46.40 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=41.6
Q ss_pred cccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCce-ecCceEEEecCC
Q 048268 4 WGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGAT-IVDQSVTIELDP 58 (244)
Q Consensus 4 cGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAt-L~d~~V~Vt~~~ 58 (244)
||.|.+|... .+..+. ...|+|+|+++..++.||- |+|.. |.|..|.|..+.
T Consensus 34 ~G~v~~v~i~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 34 YPSCRGGKVV---LDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CTTEEEEEEE---ECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CCCeEEEEEE---ECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 8999988632 222333 4579999999999999998 99999 999999997653
No 140
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.06 E-value=0.0033 Score=47.64 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=41.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|.. . ...|+|+|+++..++.|+- |||..|.|..|.|..+
T Consensus 52 F~~~G~i~~v~i----~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 52 FGPFGPMKEVKI----L-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp HTTTSCCCEEEE----E-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred HHhcCCEEEEEE----E-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 567899999863 3 3479999999999999996 8999999999999754
No 141
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.06 E-value=0.0032 Score=47.87 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=41.9
Q ss_pred cccccccceecccccccCCC-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 2 SLWGQLSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 2 SFcGkI~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
+=||+|.+|... .+..+ .-.-++|+|+++..|..|+- |||..+.|..|.|.-.
T Consensus 49 ~~~G~V~~v~i~---~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 49 EKYGEVEEMNVC---DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHTCCEEEEEEC---CSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred ccCCceEEEEEE---eCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 558999999742 22222 34589999999999999996 9999999999998643
No 142
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.05 E-value=0.001 Score=50.31 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=42.8
Q ss_pred Ccccccccc--------eecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSK--------ILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~s--------i~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+ |. +..+ .+. ...|+|+|+++..++.|+- |||..|.|..|.|..+.
T Consensus 28 F~~~G~i~~~~~~~~~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 28 FKQIGIIKTNKKTGQPMIN----LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 677899987 53 3333 233 3479999999999999998 99999999999997543
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.04 E-value=0.0059 Score=45.19 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=41.2
Q ss_pred Cccccc-ccceecccccc-cCC---CCceEEEEEEeCCchhhhhhh-cc--CceecCceEEEecCC
Q 048268 1 MSLWGQ-LSKILRNSFPL-CDN---ERSQIARVVFKDPQGAETAVL-LS--GATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGk-I~si~~~~el~-~~~---~~sq~A~VtFe~~~Aa~TALL-Ln--GAtL~d~~V~Vt~~~ 58 (244)
|+=||. |.++. +. ++. .....|+|+|+++..++.|+- |+ +..|.|..|.|..+.
T Consensus 29 f~~~G~~v~~v~----i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~ 90 (109)
T 2dis_A 29 IAKVTEGVLDVI----VYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 90 (109)
T ss_dssp HHHHSTTEEEEE----CCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESC
T ss_pred HHHhcCCceEEE----EEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcC
Confidence 455787 88885 33 222 234589999999999999998 64 489999999998654
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.002 Score=47.31 Aligned_cols=50 Identities=6% Similarity=0.124 Sum_probs=41.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|.. .++ ...|+|+|++...++.|+ .|||..|.|..|.|..+
T Consensus 48 f~~~G~i~~~~~----~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 48 FQNFGFILDFKH----YPE---KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp HHTTSCCSEEEE----ETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred HHhCCCEEEEEE----ecC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 566899999863 322 347999999999999999 78999999999998643
No 145
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.01 E-value=0.0042 Score=48.23 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=42.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. .+ ....|+|+|+++..++.|+ .|+|..|.|..|.|..+.
T Consensus 58 F~~~G~I~~v~i----~~---~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 58 FSPFGNIIDLSM----DP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp HSTTCCCSCEEE----ET---TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred HHccCCEEEEEE----eC---CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 677999999863 22 2347999999999999999 799999999999997543
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.00 E-value=0.0046 Score=49.34 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=45.1
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~ 59 (244)
|+-||.|.+|. +.++ .+. ...|+|+|.++..++.||-++|..|.|..|.|.....
T Consensus 34 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 34 FEQWGTLTDCV----VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp HGGGSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred HHhCCCEEEEE----EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 67799999986 3333 233 3489999999999999999999999999999986543
No 147
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=95.99 E-value=0.0094 Score=44.67 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=40.6
Q ss_pred Cccccc--ccceecccccccCC--CCc-eEEEEEEeCCchhhhhh-hccCc----eecCceEEEecCC
Q 048268 1 MSLWGQ--LSKILRNSFPLCDN--ERS-QIARVVFKDPQGAETAV-LLSGA----TIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGk--I~si~~~~el~~~~--~~s-q~A~VtFe~~~Aa~TAL-LLnGA----tL~d~~V~Vt~~~ 58 (244)
|+=||. |.+|. +.++. +.+ .-|+|+|+++..++.|| .|||. .|+|..|.|.-+.
T Consensus 30 F~~~G~i~v~~v~----i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 30 LSPYASLAVNNIR----LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp STTTCCCCGGGEE----CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred HHhhCCccEEEEE----EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 677886 45664 44443 333 37999999999999999 58887 4999999997553
No 148
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.95 E-value=0.0034 Score=50.17 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=35.3
Q ss_pred ceEEEEEEeCCchhhhhhhccCceecCceEEEecCCCCCC
Q 048268 23 SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPDYKP 62 (244)
Q Consensus 23 sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~~~~ 62 (244)
...|+|+|.++..++.||-|+|..|.|..|.|..+..+..
T Consensus 51 ~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 51 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp TTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCC
Confidence 4579999999999999999999999999999987665543
No 149
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=95.92 E-value=0.0035 Score=51.81 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=43.1
Q ss_pred CcccccccceecccccccCCC-CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNE-RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~-~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|... .+..+ ....|+|+|+++..++.|+- |+|..|.|..|.|..+
T Consensus 109 F~~~G~I~~v~i~---~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 109 FAEFGTLKKAAVD---YDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp HHHTSCCSEEEEC---CCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred HHhcCCeEEEEEE---ECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5668999998742 11222 34579999999999999998 9999999999999754
No 150
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.92 E-value=0.0067 Score=52.03 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=43.2
Q ss_pred CcccccccceecccccccC----CCCceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD----NERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~----~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.++ +.....|+|+|.++..|..|+.|||..|.|..|.|..+
T Consensus 232 F~~~G~v~~v~----i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 232 FEGFGSIEKIN----IPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 288 (292)
T ss_dssp HGGGSCEEEEE----CCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred HhccCCeeEEE----EEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEe
Confidence 56689999986 3333 22345799999999999999999999999999999754
No 151
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.87 E-value=0.0028 Score=46.42 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=40.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|. +. +... .....|+|+|+++..++.|+ .|||..|.|..|.|..+.
T Consensus 40 F~~~G~v~-~~----~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 40 LRELGSVP-LR----LTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp HHHTTCCC-SE----EEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred HHhcCCEE-EE----EEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45688885 32 2222 23457999999999999999 889999999999997553
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.87 E-value=0.0062 Score=48.64 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=43.0
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|.. .++ .+. ...|+|+|+++..+..|+- |+|..|.|..|.|..+
T Consensus 135 f~~~G~v~~~~~----~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 135 LTSFGPLKAFNL----VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp HHTBSCEEEEEE----EECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred HHHcCCccEEEE----eecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 556899988863 333 333 4579999999999999998 8999999999999855
No 153
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.86 E-value=0.012 Score=44.69 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=41.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh---ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL---LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL---LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++ -..|+|+|+++..|+.|+- .++..|.|..|.|.-+.
T Consensus 36 F~~fG~v~~v~----i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 36 GLPFGKVTNIL----MLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTTTSCEEEEE----EETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred HHhcCCEEEEE----EECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 78899999986 4443 3479999999999999985 36789999999997543
No 154
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.83 E-value=0.0047 Score=44.59 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=39.2
Q ss_pred Cccccc-ccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccC-ceecCceEEEecCC
Q 048268 1 MSLWGQ-LSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSG-ATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGk-I~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnG-AtL~d~~V~Vt~~~ 58 (244)
|+=||. |..+.. .+ ...|+|+|+++..++.|+. ||| ..|.|..|.|..+.
T Consensus 29 F~~~G~vv~~~~~----~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 29 FGDRKLPLAGQVL----LK----SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp HHHTTCCCSSCEE----EE----TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred HHHcCCceEEEEE----cC----CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 455777 565542 21 3479999999999999996 999 99999999998654
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.82 E-value=0.0022 Score=51.72 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=42.0
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+-|| |.+|.. +.+.+++ .-.|+|+|+++..++.||.|||..|.+..|.|....
T Consensus 67 F~~~G-i~~v~i---~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 67 FSPLN-PVRVHI---EIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp HCSCC-CSEEEC---CCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred HHhcC-CeEEEE---EECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 67788 667753 2222333 347999999999999999999999999999997554
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.81 E-value=0.0057 Score=49.53 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=42.7
Q ss_pred CcccccccceecccccccC--C-CCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--N-ERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~-~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|.. .++ . .....|+|+|+++..++.||- |+|..|.|..|.|...
T Consensus 49 f~~~G~i~~v~i----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 49 FAPFGPIKSIDM----SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HGGGSCEEEEEE----CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred HHhCCCEEEEEE----eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 677999999973 332 2 245689999999999999998 9999999999999644
No 157
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.71 E-value=0.0048 Score=50.08 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.4
Q ss_pred Ccccc--cccceecccccccC--CCCc-eEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWG--QLSKILRNSFPLCD--NERS-QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcG--kI~si~~~~el~~~--~~~s-q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=|| .|.+|. +..+ .+.+ .-|+|+|+++..++.||- |||..|.|..|.|..+
T Consensus 76 F~~~G~i~v~~v~----i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 76 IRSIGVYDVVELK----FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp HHHTTCCCEEEEE----EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred HHHHCCccEEEEE----EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 56689 888886 4333 3443 379999999999999985 5999999999999755
No 158
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.66 E-value=0.01 Score=44.39 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=40.2
Q ss_pred CcccccccceecccccccC-CCC-ceEEEEEEeCCchhhhhhh-ccCceec--------CceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCD-NER-SQIARVVFKDPQGAETAVL-LSGATIV--------DQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~-~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~--------d~~V~Vt~ 56 (244)
|+-||.|.+|.. .++ .+. ...|+|+|+++..++.|+- |||..|. +.+|.|.-
T Consensus 46 F~~~G~i~~~~i----~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~ 108 (114)
T 1x5o_A 46 LKPFGQVISTRI----LRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 108 (114)
T ss_dssp TTTTSCEEEEEE----EECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEE
T ss_pred HHhcCCEEEEEE----EECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEc
Confidence 778999999863 333 333 3479999999999999998 9999994 56676653
No 159
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.63 E-value=0.0055 Score=51.52 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=42.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|.. .++ ....|+|+|+++..|+.|+- |||..|.|..|.|..+
T Consensus 26 F~~~G~v~~v~i----~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 26 FCLYGNVEKVKF----MKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp HTTTSCEEEEEE----CTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHhcCCeEEEEE----ecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 677999999963 332 23469999999999999996 9999999999999854
No 160
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.53 E-value=0.0054 Score=49.50 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=42.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++. ...|+|+|+++..++.|+- |+|..|.|..|.|..+.
T Consensus 25 F~~~G~i~~v~----i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 25 FGVYGDVQRVK----ILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp HHTTCCCSEEE----CSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred HHhcCCEEEEE----EEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 56789999986 33333 2359999999999999996 99999999999997553
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.53 E-value=0.0085 Score=46.59 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=41.1
Q ss_pred Cccc-ccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLW-GQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFc-GkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=| |+|.+|. ...|+|+|.+...|+.|+- |+|..|.|.+|.|.-+..
T Consensus 34 F~~yGG~Vl~Vt-----------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 34 SDNCGGKVLSIT-----------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp HHTTTCCEEECC-----------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred HHHcCCeeEEEe-----------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 5668 5999994 2679999999999999995 999999999999985543
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.51 E-value=0.0069 Score=47.27 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=35.1
Q ss_pred ceEEEEEEeCCchhhhhhhccCceecCceEEEecCCCCCC
Q 048268 23 SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPDYKP 62 (244)
Q Consensus 23 sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~~~~ 62 (244)
...|+|+|+++..++.|+-|+|..|.|..|.|.....+..
T Consensus 51 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC
Confidence 4579999999999999999999999999999987655543
No 163
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.44 E-value=0.02 Score=43.76 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=41.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-cc--CceecCceEEEecCCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LS--GATIVDQSVTIELDPDY 60 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-Ln--GAtL~d~~V~Vt~~~~~ 60 (244)
|+=+|+|.++. +.++. ..|+|+|+++..|+.|+- |+ +..|.|.+|.|.-+..+
T Consensus 37 F~~fG~V~~v~----i~~~k---g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 37 VEPFGVISNHL----ILNKI---NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp TGGGSCEEEEE----ECSSS---SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred HHhcCCEEEEE----EEcCC---CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 77799999996 34432 359999999999999985 56 46799999999765543
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.43 E-value=0.013 Score=49.99 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=44.5
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.++.. +.+.++. ...|+|+|.++..|..|+. |||..|.|..|.|.-+
T Consensus 206 f~~~G~i~~v~i---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 206 LSAVHSPTFCQL---ACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TCSSSCCSEEEE---EECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred hhCCCCeEEEEE---EECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 677899999973 2333343 5689999999999999999 9999999999999754
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=95.41 E-value=0.01 Score=46.27 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=43.2
Q ss_pred Cccccccccee----cccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKIL----RNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~----~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++. ..+.+...+.....|+|+|.++..+..||- |||..|.|..|.|..+.
T Consensus 66 F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 128 (143)
T 3egn_A 66 FGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFAR 128 (143)
T ss_dssp HGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECC
T ss_pred HHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 56689888741 111122233345689999999999999998 99999999999998653
No 166
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.25 E-value=0.0086 Score=46.53 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=39.9
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|..+. +..+. +.|||.+.+.|..|+=|||..|.|..|+|...
T Consensus 45 F~~~G~Vilvr----~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 45 LGSYGTIVLVR----INQGQ-----MLVTFADSHSALSVLDVDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHSCCSEEE----EETTE-----EEEECSCSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred HHHCCCEEEEE----EecCc-----EEEEEcChHHHHHHHhcCCeeeCCeEEEEecc
Confidence 45578888775 33332 99999999999999999999999999999753
No 167
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.25 E-value=0.0066 Score=50.92 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=42.8
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|. +.++. ...|+|+|.++..++.|+ .|+|..|.|..|.|..+.
T Consensus 56 F~~~G~i~~v~----i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 56 FGVYGDVQRVK----ILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp HHHHTCEEEEE----ECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred HHhCCCeEEEE----EEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 56789999986 34433 235999999999999999 499999999999997554
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.22 E-value=0.011 Score=45.88 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=40.7
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecC--ceEEEe
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVD--QSVTIE 55 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d--~~V~Vt 55 (244)
|+=||.|.++. +.++ ++. ...|+|+|.++..+..|+- |+|..|.| .+|.|.
T Consensus 110 f~~~G~i~~~~----i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 110 FGKYGSIVQKN----ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp HTSSSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred hhcCCcEEEEE----EEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 56689998886 3333 233 3579999999999999998 99999977 888885
No 169
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.21 E-value=0.012 Score=46.48 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=41.1
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-cc--CceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LS--GATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-Ln--GAtL~d~~V~Vt~~~ 58 (244)
|+=||+|.+|. +.++ -..|+|+|+++..|+.|+- |+ +..|.|..|.|.-+.
T Consensus 52 F~~fG~V~~v~----i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 52 GLPFGKVTNLL----MLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp HTTTSCCCEEE----EEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred HHhcCCEEEEE----EeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 67799999996 3333 3479999999999999995 55 578999999998553
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.16 E-value=0.012 Score=46.64 Aligned_cols=51 Identities=27% Similarity=0.293 Sum_probs=40.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecC--ceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVD--QSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d--~~V~Vt~~ 57 (244)
||=||.|.+|.. .... .-.|+|+|+++..|+.|+- |||..|.| ..|.|.-+
T Consensus 46 Fs~yG~V~~v~i----~~~~--Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 46 CNPVGKVQRIVI----FKRN--GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp HTTTSCEEEEEE----EESS--SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred HHhcCCEEEEEE----EeCC--CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 788999999974 2221 2259999999999999997 99999988 47888633
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.13 E-value=0.015 Score=46.15 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=39.9
Q ss_pred Cccccccc--ceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLS--KILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~--si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+=| .|. +|.. +.+.+++ ...|||+|+++..++.||-++|..|+|..|.|.++
T Consensus 63 F~~~-~i~~~~v~i---~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 63 FSGL-EIVPNGITL---PVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp TTTS-CEEEEEEEC---CCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred HhcC-CceeeEEEE---EECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 6667 455 6642 2222333 45899999999999999999999999999988654
No 172
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.08 E-value=0.0083 Score=46.57 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=40.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-cc--CceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LS--GATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-Ln--GAtL~d~~V~Vt~~ 57 (244)
|+=||+|.+|. +.++ -.-|+|+|+++..|+.|+- |+ |..|.|..|.|.-+
T Consensus 37 F~~fG~V~~v~----i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 37 GLPFGKVTNLL----MLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp HHHHCCEEEEE----EETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred HHhcCCEEEEE----EEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 56789999997 3443 2479999999999999996 55 58999999999754
No 173
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=94.93 E-value=0.02 Score=49.00 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=43.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
|+-||.|.+|.. .++ ...|+|+|.++..++.|+- |+|..|.|..|.|..+.
T Consensus 43 F~~~G~i~~v~i----~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 43 FERYGEPSEVFI----NRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TGGGCCCSEEEE----ETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhcCCEEEEEE----eCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 788999999963 333 3479999999999999997 99999999999998654
No 174
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.88 E-value=0.014 Score=45.56 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=41.6
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=+|+|.+|. +.++.. -..+||+|+++..|..|+ -|||..++|..|.|.-+
T Consensus 38 f~kfG~V~~v~----i~~~~~-~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~ 90 (114)
T 3s6e_A 38 CNKHGGVIHIY----VDKNSA-QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYV 90 (114)
T ss_dssp HTTTTCCSEEE----ECTTCT-TCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HhccCCEEEEE----EecCCC-cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEE
Confidence 45689999986 333332 346999999999999998 59999999999999743
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=94.87 E-value=0.014 Score=44.85 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhh-ccCceecCce--EEEe
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVL-LSGATIVDQS--VTIE 55 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~--V~Vt 55 (244)
|+=||.|.++.. .++ ++. ...|+|+|.++..+..|+- |+|..|.|.. |.|.
T Consensus 109 f~~~G~i~~~~i----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 109 FSQYGRIITSRI----LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp HGGGSCEEEEEE----EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred HHhcCCEeEEEE----EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 566899988863 333 232 4579999999999999998 9999999965 6664
No 176
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.87 E-value=0.018 Score=43.85 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=40.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccC--ceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSG--ATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnG--AtL~d~~V~Vt~~~ 58 (244)
|+-||+|.+|. |.++ -..|+|+|+++..|+.|+- |+| ..|.|..|.|.-+.
T Consensus 36 F~~fG~V~~v~----i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 36 LEKFGTICYVM----MMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp HTTTSCEEEEE----EETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred HHhCCCEEEEE----EECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 67799999986 3332 2479999999999999996 654 56999999997553
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.81 E-value=0.007 Score=47.65 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=40.5
Q ss_pred Cccccc----ccceecccccccCCCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQ----LSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGk----I~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+=||. |.+|.. +.+.+++ ...|+|+|+++..++.||.++|..|++..|.|..+
T Consensus 44 F~~~g~v~g~v~~v~i---~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 44 FGQHCPITGGKEGILF---VTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp HHTTSCCTTGGGGEEE---EECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred HHhhCCccCCcceEEE---EECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 443554 467753 2233443 45899999999999999999999999999988654
No 178
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=94.76 E-value=0.013 Score=45.10 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=39.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCce--ecCceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGAT--IVDQSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAt--L~d~~V~Vt~ 56 (244)
|+=||+|.++. +.+.- ..|+|+|+++..|..|+- |+|.. |.|.+|.|.-
T Consensus 42 F~~fG~V~~v~----i~~~k---g~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 42 LQEFGPISYVV----VMPKK---RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp HGGGSCEEEEE----EETTT---TEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred HhccCCEEEEE----EEcCC---CEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 56689999996 33322 379999999999999994 77764 7899999974
No 179
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=94.76 E-value=0.01 Score=46.42 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=41.3
Q ss_pred CcccccccceecccccccCC----CC---ceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDN----ER---SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~----~~---sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=||+|.+|.. .++. +. --.+||+|+++..|..|+ -|||..++|..|.|.-+
T Consensus 46 f~k~G~V~~v~I----~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 46 CGKFGAVNRVII----YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 106 (118)
T ss_dssp HTTTSCEEEEEE----EEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred HhccCCEeEEEE----eecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEc
Confidence 456899999864 2221 11 247999999999999998 59999999999999754
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.75 E-value=0.024 Score=48.31 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=43.7
Q ss_pred CcccccccceecccccccCCCCc-eEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERS-QIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~s-q~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++... .-+..+.+ ..|+|+|.++..+..|+ .|+|..|.|..|.|..+.
T Consensus 116 f~~~G~i~~~~i~--~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 116 VRPFGSLERCFLV--YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp HGGGSCEEEEEEE--ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhcCCeeEEEEE--eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 5678999988631 11123433 47999999999999999 999999999999998654
No 181
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.67 E-value=0.054 Score=39.40 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=32.0
Q ss_pred eEEEEEEeCCchhhhhhh-ccCceecCceEEEecCC
Q 048268 24 QIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDP 58 (244)
Q Consensus 24 q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~ 58 (244)
..|+|+|+++..++.||- |+|..|.|..|.|..+.
T Consensus 55 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 55 GFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 489999999999999997 99999999999998654
No 182
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.65 E-value=0.012 Score=49.30 Aligned_cols=52 Identities=29% Similarity=0.478 Sum_probs=41.0
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecC--ceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVD--QSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d--~~V~Vt~~ 57 (244)
||=||+|.+|.. .... ..-.|+|+|+++..|+.|+- |||..|.| ..|.|.-+
T Consensus 67 Fs~fG~V~~V~i----~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 67 FSKFGTVLKIIT----FTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp HHHHSCEEEEEE----EESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred HHhcCCEEEEEE----EeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 677899999973 2221 23379999999999999998 99999966 88888743
No 183
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.52 E-value=0.027 Score=46.65 Aligned_cols=54 Identities=28% Similarity=0.248 Sum_probs=43.2
Q ss_pred CcccccccceecccccccCC--CC-ceEEEEEEeCCchhhhhh-hccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN--ER-SQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~--~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.+|. +.++. +. ...|+|+|+++..++.|| .|+|..+.|..|.|....
T Consensus 36 F~~~G~I~~v~----i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 36 FSPAGPILSIR----VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HGGGSCEEEEE----EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHhhCCEEEEE----EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 67799999986 44432 33 358999999999999999 689999999999987543
No 184
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=94.28 E-value=0.049 Score=38.99 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=39.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELDPD 59 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~~~ 59 (244)
|+=| .|.++.. . .....|+|+|+++..++.|+- |||..|.|..|.|..++.
T Consensus 26 F~~~-~v~~~~i----~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 26 LKDY-DLKYCYV----D---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp TCSS-CCCCEEE----E---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HhhC-CeEEEEE----e---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4444 6666642 1 223479999999999999998 999999999999986543
No 185
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.04 E-value=0.049 Score=42.48 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=40.9
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-c--cCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-L--SGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-L--nGAtL~d~~V~Vt~~~ 58 (244)
|+=||+|.+|. +.++ -..|+|+|+++..|+.|+- | ++..|.|..|.|.-+.
T Consensus 47 F~~fG~V~~v~----i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 47 AEPYGKIKNYI----LMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp TTTTSCCSEEE----EETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred HHhcCCEEEEE----EecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 77899999997 3333 2479999999999999986 5 4677999999997543
No 186
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.82 E-value=0.034 Score=44.75 Aligned_cols=51 Identities=29% Similarity=0.485 Sum_probs=40.1
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceecC--ceEEEec
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIVD--QSVTIEL 56 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d--~~V~Vt~ 56 (244)
||=+|.|.+|.. .... +.-.|+|+|+++..|+.|+- |||..|.| ..|.|.-
T Consensus 49 Fs~yG~V~~V~i----~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 49 FSKFGTVLKIIT----FTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp HTTSSCEEEEEE----EEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred HhCcCCEEEEEE----EcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 788999999963 2222 23349999999999999985 99999988 6777763
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=93.66 E-value=0.02 Score=45.01 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=34.0
Q ss_pred CceEEEEEEeCCchhhhhhhccCceecCceEEEecCCC
Q 048268 22 RSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 22 ~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~ 59 (244)
....|+|+|+++..++.||-|+|..|.|..|.|..+..
T Consensus 53 ~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp TTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred cccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 34589999999999999999999999999999986643
No 188
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.49 E-value=0.081 Score=37.62 Aligned_cols=51 Identities=24% Similarity=0.156 Sum_probs=35.6
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
|+=||.|.++.. .++ .-.-|+|+|+++..++.+ +-.+-.+.+..|.|..+.
T Consensus 26 F~~~G~i~~v~i----~~~--~~g~afV~f~~~~~a~~~-~~~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 26 FSQYGDVMDVFI----PKP--FRAFAFVTFADDQIAQSL-CGEDLIIKGISVHISNAE 76 (88)
T ss_dssp STTTSCCCEEEC----CSS--CCSCCEEECSCHHHHHHT-TTCEEEETTEEEEEECCC
T ss_pred HHHcCCeeEEEE----ecC--CCCEEEEEECCHHHHHHH-hcCCceeCCEEEEEEecC
Confidence 788999999963 333 234799999999999753 222334478888887543
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.44 E-value=0.056 Score=40.72 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=36.1
Q ss_pred CcccccccceecccccccC-C----CCceEEEEEEeCCchhhhhhhc----cCc--------eecCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCD-N----ERSQIARVVFKDPQGAETAVLL----SGA--------TIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~-~----~~sq~A~VtFe~~~Aa~TALLL----nGA--------tL~d~~V~Vt~~~ 58 (244)
|+=||.|. +.. +.+. . ....-|+|+|+++..++.||-. +|- .+.+..|.|.||.
T Consensus 29 F~~~G~i~-~~~---~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~~~~~~~~v~p~~ 99 (114)
T 2dnl_A 29 FRRFGPLV-VDW---PHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWN 99 (114)
T ss_dssp TTTTCCCC-EEC---TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSSSCSEEEEEECCC
T ss_pred HHhcCCEE-EEE---eecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCCcCCCeeeccCCc
Confidence 77899998 532 2222 1 2245899999999999999842 555 4455666666653
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=93.37 E-value=0.046 Score=42.29 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=40.2
Q ss_pred CcccccccceecccccccC--CCC-ceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--NER-SQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+=||.|.+|. +.++ .+. ..-|+|+|+++..++.||- ++..|.|..|.|...
T Consensus 24 F~~~G~i~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 24 FGKYGTVTDLK----IMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRA 78 (167)
T ss_dssp HTTTCCEEEEE----CCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEEC
T ss_pred HHhCCCEEEEE----EEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccc
Confidence 67799999996 3333 233 3479999999999999998 577888888887644
No 191
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.072 Score=43.81 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=41.1
Q ss_pred CcccccccceecccccccCCCC---ceEEEEEEeC-----Cch---hhhhhh---ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER---SQIARVVFKD-----PQG---AETAVL---LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~---sq~A~VtFe~-----~~A---a~TALL---LnGAtL~d~~V~Vt~~ 57 (244)
||=+|.|.++. ++.+.+. --.++|+|.| ..| |..|+. |||..|+|..|.|...
T Consensus 27 Fs~fGeV~~~~----li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 27 FKKYGEISHFE----AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHTTSCCSEEE----EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHhcCCeEEEE----EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 67789999996 5555544 4689999996 343 889977 8999999999999743
No 192
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.23 E-value=0.092 Score=39.87 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=38.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~ 57 (244)
|+-||.|.+|.. .+ ..-..|+|+|+++..|+.|+-. +-.+.|.+|.|.-+
T Consensus 38 F~~~G~V~~v~i----~~--~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 38 LQKYGEVLNLVL----SS--KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWL 87 (100)
T ss_dssp HHTTSCEEEEEE----ES--SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECS
T ss_pred HHhcCCEEEEEE----cc--CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEc
Confidence 677999999963 32 2234799999999999999875 44578899999743
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=93.11 E-value=0.03 Score=43.49 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=40.2
Q ss_pred CcccccccceecccccccCC-----CCceEEEEEEeCCchhhhhh-hccCceec---CceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDN-----ERSQIARVVFKDPQGAETAV-LLSGATIV---DQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~-----~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~---d~~V~Vt~~~ 58 (244)
|+=||.|.+|.. .++. .....|+|+|+++..++.|+ .|+|..+. +..+.+.+..
T Consensus 24 F~~~G~i~~v~i----~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 24 FEQYGAVYEINV----LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp HHTTSCEEEEEE----EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred HHhCCCEEEEEE----EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 566899999863 3332 13457999999999999999 59998887 4667776543
No 194
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.05 E-value=0.067 Score=38.90 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=35.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceec--CceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIV--DQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~--d~~V~Vt~~ 57 (244)
|+=||.|.++.. .++ .-.-|+|+|+++..++ + |+|..+. |..|.|..+
T Consensus 32 F~~~G~i~~v~i----~~~--srGfaFV~F~~~~~A~-~--~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 32 FCQYGEVVDVFI----PKP--FRAFAFVTFADDKVAQ-S--LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp HTTTSCEEEEEC----CSS--CCSEEEEEESCHHHHH-H--HTTCEEEETTEEEEEEEC
T ss_pred HhccCCEEEEEE----eeC--CCCEEEEEECCHHHHH-H--HcCCCcccCCEEEEEEEc
Confidence 677999999973 332 2348999999999998 3 5666654 778888654
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=92.87 E-value=0.073 Score=41.68 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=32.5
Q ss_pred CceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 22 RSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 22 ~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
....|+|+|+++..+..||- |+|..|.|..|.|..+
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 34579999999999999998 8999999999999755
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=92.80 E-value=0.045 Score=42.42 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=35.8
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhh-hccCceecCc
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAV-LLSGATIVDQ 50 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~ 50 (244)
|+=||.|.++.. +.+.++. ...|+|+|+++..|..|+ .|||..|.+.
T Consensus 116 F~~~G~i~~v~~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 116 FSSFGQIEECRI---LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp HGGGSCEEEEEE---EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred HHhCCCEEEEEE---EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 566899999863 2333343 346999999999999999 8999888653
No 197
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.44 E-value=0.055 Score=42.53 Aligned_cols=50 Identities=10% Similarity=0.219 Sum_probs=38.7
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCcee-----cCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATI-----VDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL-----~d~~V~Vt~~ 57 (244)
|+=||.|.+|. |..+ -.-|+|+|+++..|+.|+- |||..| .+.+|.|.-+
T Consensus 48 F~~fG~v~~v~----i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 48 LEKCGLVDALL----MPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp HHHHSCEEEEE----CCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred HHhcCCeEEEE----EeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 56689999986 3332 2379999999999999996 999988 5667777543
No 198
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=92.34 E-value=0.04 Score=42.54 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=39.4
Q ss_pred Ccccccccc--eecccccccC--CCC-ceEEEEEEeCCchhhhhh-hccCc----eecCceEEEecCC
Q 048268 1 MSLWGQLSK--ILRNSFPLCD--NER-SQIARVVFKDPQGAETAV-LLSGA----TIVDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~s--i~~~~el~~~--~~~-sq~A~VtFe~~~Aa~TAL-LLnGA----tL~d~~V~Vt~~~ 58 (244)
|+=||.|.. |. +.++ .+. -.-++|+|+++ .+..|+ .|+|. .|.|..|.|..+.
T Consensus 44 F~~~G~v~~~~v~----i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~ 106 (131)
T 2m2b_A 44 LAPYAVLSSSNVR----VIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAK 106 (131)
T ss_dssp HGGGCCCCTTTEE----CCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECC
T ss_pred HHHhCCcceeeEE----EEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECC
Confidence 567899977 54 3333 333 34799999999 777775 68999 9999999997553
No 199
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.69 E-value=0.1 Score=45.92 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=41.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCcee------------cCceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATI------------VDQSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL------------~d~~V~Vt~~~ 58 (244)
|+=+|.|.+|.. +.+ -.-|+|+|++...|+.|+ -|+|..| .|..|.|.-+.
T Consensus 164 F~~fG~I~~v~v----~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 164 FSRLGDIDRIRY----VES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp HHTTSCEEEEEE----EGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC
T ss_pred HHccCCEEEEEE----ECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEcc
Confidence 677899999973 322 347999999999999998 5999999 78899997553
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=90.59 E-value=0.11 Score=43.53 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=35.9
Q ss_pred Ccccccc--cceecccccccC-CCCceEEEEEEeCCchhhhhhh-ccCceecCc
Q 048268 1 MSLWGQL--SKILRNSFPLCD-NERSQIARVVFKDPQGAETAVL-LSGATIVDQ 50 (244)
Q Consensus 1 FSFcGkI--~si~~~~el~~~-~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~ 50 (244)
|+=||.| .++. +..+ ++....++|+|+++..|..||. |||..|.|.
T Consensus 144 F~~~G~v~~~~v~----~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 144 CDELGVKRPTSVK----VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HHHHTCCCCSEEE----ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred HHhcCCcceEEEE----EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 4568988 7775 3333 3445899999999999999996 999999764
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=89.88 E-value=0.18 Score=43.00 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=42.1
Q ss_pred CcccccccceecccccccCCCC-ceEEEEEEeCCchhhhhhhc--cCceec---CceEEEecCCCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNER-SQIARVVFKDPQGAETAVLL--SGATIV---DQSVTIELDPDY 60 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~-sq~A~VtFe~~~Aa~TALLL--nGAtL~---d~~V~Vt~~~~~ 60 (244)
|+=||.|.+|.. +.+..+. ...|+|+|.++..+..|+-. +|..+. +.+|.|.+....
T Consensus 117 F~~~G~i~~v~i---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 117 FSQFGPVEKAVV---VVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HGGGSCEEEEEE---EEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHhcCCeEEEEe---eeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 677899999874 2333333 45799999999999999965 455555 889999877543
No 202
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=87.56 E-value=0.28 Score=40.66 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=41.1
Q ss_pred CcccccccceecccccccC--C-----CCceEEEEEEeCCchhhhhhh-ccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCD--N-----ERSQIARVVFKDPQGAETAVL-LSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~--~-----~~sq~A~VtFe~~~Aa~TALL-LnGAtL~d~~V~Vt~~ 57 (244)
|+=+|+|.++.. .++ + ..--.+||.|.++..+..|+- |||..+.|..|.+.-.
T Consensus 150 ~~~~G~v~~~~v----~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 150 CGKFGAVNRVII----YQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HTTTSCEEEEEE----EEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHccCCeEEEEE----ecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 456799998863 221 1 123579999999999999986 9999999999999754
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.75 E-value=1 Score=35.81 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=36.4
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeC-Cchhhhhhh-c--cCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKD-PQGAETAVL-L--SGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~-~~Aa~TALL-L--nGAtL~d~~V~Vt~~ 57 (244)
||=+|.|..|. +.++.. ++||.|++ +.+|..|+- | .|.+|.|..+++...
T Consensus 40 F~~~G~V~~Vd----~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 40 FSNHGEIKWID----FVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp TCSSCCEEEEE----CCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred HHhcCCEEEEE----EecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 67789999997 444433 59999999 566666554 5 478889988888643
No 204
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=83.51 E-value=0.53 Score=35.82 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=39.5
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhh-hccCceecCceEEEecC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAV-LLSGATIVDQSVTIELD 57 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TAL-LLnGAtL~d~~V~Vt~~ 57 (244)
|+=+|.|.++... . ..--|+|+|.++.-|+.|+ -|||..|.|..|.|.-+
T Consensus 28 F~q~G~V~~~~l~----~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 28 CMQHGPLVSFHPY----L---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp HHHHSCEEEEEEE----T---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred HHhhCCEEEEEEc----C---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3447899998743 2 2447999999998888877 48999999999999755
No 205
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=82.35 E-value=0.45 Score=38.05 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=30.8
Q ss_pred ceEEEEEEeCCchhhhhhh-ccCceec-CceEEEec
Q 048268 23 SQIARVVFKDPQGAETAVL-LSGATIV-DQSVTIEL 56 (244)
Q Consensus 23 sq~A~VtFe~~~Aa~TALL-LnGAtL~-d~~V~Vt~ 56 (244)
...|+|+|+++..+..|+- |||..|. |..|.|.-
T Consensus 158 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 158 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 3579999999999999998 9999999 89999864
No 206
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=81.61 E-value=0.73 Score=38.28 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=31.2
Q ss_pred eEEEEEEeCCchhhhhhh-ccCceec-CceEEEecC
Q 048268 24 QIARVVFKDPQGAETAVL-LSGATIV-DQSVTIELD 57 (244)
Q Consensus 24 q~A~VtFe~~~Aa~TALL-LnGAtL~-d~~V~Vt~~ 57 (244)
..|+|+|+++..+..|+- |||..|. |..|.|.-+
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 479999999999999999 9999999 999999744
No 207
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=81.22 E-value=1.1 Score=35.77 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=40.9
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhhccCceecC-ceEEEecCC
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVLLSGATIVD-QSVTIELDP 58 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALLLnGAtL~d-~~V~Vt~~~ 58 (244)
|+=||.|.+... ....--.+|+|.++..|+-||..||..|.+ --|-|.|+.
T Consensus 44 F~~~G~Iv~~~~-------~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 44 FAQYGNILKHVM-------SNTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHTTSCEEEEEE-------CSSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred HHhhCcEEEecc-------CCCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 566999998863 233567999999999999999999999985 567777763
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=79.23 E-value=1.2 Score=35.67 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=35.5
Q ss_pred ccccceecccccccCCCCceEEEEEEeCCc-hhhhhhhccCceecCceEEEec
Q 048268 5 GQLSKILRNSFPLCDNERSQIARVVFKDPQ-GAETAVLLSGATIVDQSVTIEL 56 (244)
Q Consensus 5 GkI~si~~~~el~~~~~~sq~A~VtFe~~~-Aa~TALLLnGAtL~d~~V~Vt~ 56 (244)
|.|.+|.. +. + .+-|.|.|+|.. |++-+|-|+|-+|.|..|.+..
T Consensus 51 g~i~KI~L----~p-D--H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 51 KDIRKILL----VS-D--FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTCSEEEE----ET-T--TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cceeEEEE----ec-C--CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 67788853 22 2 567999999976 5677789999999999999964
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.00 E-value=2.5 Score=33.19 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=30.8
Q ss_pred eEEEEEEeCCchhhhhhhccCceecCceEEEecCCC
Q 048268 24 QIARVVFKDPQGAETAVLLSGATIVDQSVTIELDPD 59 (244)
Q Consensus 24 q~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~~ 59 (244)
+.|.|||.++..+++-|=-..=.|.+..|.|.|+..
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPP 83 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCC
Confidence 789999999999998776667788889999988643
No 210
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=64.33 E-value=3.2 Score=38.18 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=33.2
Q ss_pred CcccccccceecccccccCCCCceEEEEEEeCCchhhhhhh-ccCceec
Q 048268 1 MSLWGQLSKILRNSFPLCDNERSQIARVVFKDPQGAETAVL-LSGATIV 48 (244)
Q Consensus 1 FSFcGkI~si~~~~el~~~~~~sq~A~VtFe~~~Aa~TALL-LnGAtL~ 48 (244)
|+=+|+|.+|. |.+ ++ .-++|+|++...|+.|+- |||..|.
T Consensus 41 F~~~G~V~~v~----~~~--~k-gfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 41 LEKCGLVDALL----MPP--NK-PYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp HHTTSCEEEEE----CCT--TC-SEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred HHhcCCeEEEE----EeC--CC-CEEEEEECCHHHHHHHHHHhCCCccc
Confidence 56689999986 322 22 489999999999999987 9999995
No 211
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=57.06 E-value=5.8 Score=32.26 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=30.8
Q ss_pred EEEEEEeCCchhhhhhhccCceecCceEEEecCC
Q 048268 25 IARVVFKDPQGAETAVLLSGATIVDQSVTIELDP 58 (244)
Q Consensus 25 ~A~VtFe~~~Aa~TALLLnGAtL~d~~V~Vt~~~ 58 (244)
=..|||.++.+|.-||.-||..|.|.-|-|.|+.
T Consensus 64 WikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 64 WTKITYDNPASAVDALLENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp EEEEEBSSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred EEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECC
Confidence 3589999999999999999999999988888774
No 212
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=32.83 E-value=19 Score=30.15 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=25.0
Q ss_pred eEEEEEEeCCchhhhhhh-ccCceecCceE
Q 048268 24 QIARVVFKDPQGAETAVL-LSGATIVDQSV 52 (244)
Q Consensus 24 q~A~VtFe~~~Aa~TALL-LnGAtL~d~~V 52 (244)
..++|+|++...+..|+- |||..|.+...
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 589999999999999998 99988876543
No 213
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.33 E-value=26 Score=21.08 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.5
Q ss_pred HhccccccHHHHHHHHHHhhh
Q 048268 96 LAKGFILGKDAVGKAKAFDEK 116 (244)
Q Consensus 96 LAkGYvLgddAi~KA~~fDek 116 (244)
=..||.||..+|.--+.|-+|
T Consensus 5 NSAGYLLGp~~id~h~s~~dK 25 (27)
T 1smz_A 5 NSAGYLLGKINLKALAALAKK 25 (27)
T ss_dssp HHHTTTTTTTHHHHHHHHHHH
T ss_pred cccceeeccccchhhhhhhhh
Confidence 356999999998877777654
No 214
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=27.11 E-value=26 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=18.0
Q ss_pred ccccccceecccccccCCCCceEEEEEEeCCc
Q 048268 3 LWGQLSKILRNSFPLCDNERSQIARVVFKDPQ 34 (244)
Q Consensus 3 FcGkI~si~~~~el~~~~~~sq~A~VtFe~~~ 34 (244)
|-|+|.+|+.. .++.+|.|+|-.
T Consensus 30 Y~gtI~~V~~~---------~gtC~V~F~D~s 52 (66)
T 2eqj_A 30 YLGTIKKINIL---------KQSCFIIFEDSS 52 (66)
T ss_dssp EEEEEEEEETT---------TTEEEEEETTTE
T ss_pred EEeEEEEEccC---------CcEEEEEEccCC
Confidence 45899999753 678999999853
No 215
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=23.06 E-value=75 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhcCccHHHHHHHH-hhhhhcc
Q 048268 106 AVGKAKAFDEKHRFTSTATATVA-SLDQKIG 135 (244)
Q Consensus 106 Ai~KA~~fDekhgiSs~f~a~v~-slD~k~g 135 (244)
|++.|++.=+++.........|+ +||+|||
T Consensus 34 a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG 64 (102)
T 1yo3_A 34 AIDCANQALQKYNVEKDIAAHIKKEFDRKYD 64 (102)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhhhcC
Confidence 33333333334444455555565 6788876
No 216
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=22.44 E-value=40 Score=23.82 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=17.4
Q ss_pred ccccccceecccccccCCCCceEEEEEEeCCc
Q 048268 3 LWGQLSKILRNSFPLCDNERSQIARVVFKDPQ 34 (244)
Q Consensus 3 FcGkI~si~~~~el~~~~~~sq~A~VtFe~~~ 34 (244)
|-|+|.+|+.. .++..|.|+|-+
T Consensus 20 YlGtI~~V~~~---------~~~clV~F~D~s 42 (58)
T 4hcz_A 20 YLGTIKKVDSA---------REVCLVQFEDDS 42 (58)
T ss_dssp EEEEEEEEETT---------TTEEEEEETTSC
T ss_pred EeEEEEEEecC---------CCEEEEEEcCCC
Confidence 45889888642 558999999864
No 217
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=21.90 E-value=84 Score=23.09 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhcCccHHHHHHHH-hhhhhccc
Q 048268 105 DAVGKAKAFDEKHRFTSTATATVA-SLDQKIGF 136 (244)
Q Consensus 105 dAi~KA~~fDekhgiSs~f~a~v~-slD~k~gl 136 (244)
+|++.|++.=++|.+.....+.|+ +||+|||-
T Consensus 20 ~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~ 52 (89)
T 3rjs_A 20 DAIDCANQALEKYNIEKDIAAFIKKEFDRKHNP 52 (89)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCC
Confidence 444444444455555544555554 68888863
No 218
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=20.75 E-value=72 Score=25.52 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=22.2
Q ss_pred ecccccccC-CCCceEEEEEEeCCchhhhh
Q 048268 11 LRNSFPLCD-NERSQIARVVFKDPQGAETA 39 (244)
Q Consensus 11 ~~~~el~~~-~~~sq~A~VtFe~~~Aa~TA 39 (244)
.++|.|.|+ ++.+.+|..+|++|++.+.-
T Consensus 15 vpdVrLtRsrdg~~g~A~f~F~~p~al~~~ 44 (120)
T 2kvo_A 15 VPEVRLSKSKNGQSGMAKFYFLEPTILAKE 44 (120)
T ss_dssp CCEEEEEECTTSCSEEEEEEEESCGGGTSS
T ss_pred CCceEEEEcccCCccEEEEEECCchhcccc
Confidence 344456665 68899999999999998654
No 219
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=41 Score=24.46 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=17.3
Q ss_pred ccccccceecccccccCCCCceEEEEEEeCCc
Q 048268 3 LWGQLSKILRNSFPLCDNERSQIARVVFKDPQ 34 (244)
Q Consensus 3 FcGkI~si~~~~el~~~~~~sq~A~VtFe~~~ 34 (244)
|-|+|.+|.. ..+..+|.|+|-+
T Consensus 26 YlGtV~kV~~---------~~~~ClV~FeD~s 48 (68)
T 2e5p_A 26 YLGTIKKVDS---------AREVCLVQFEDDS 48 (68)
T ss_dssp EEEEEEEEET---------TTTEEEEEETTTE
T ss_pred EEeEEEEEec---------CCcEEEEEEccCC
Confidence 4588988863 2678999999853
Done!