BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048269
         (465 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SEI|A Chain A, Crystal Structure Of Caskin1 Tandem Sams
 pdb|3SEI|B Chain B, Crystal Structure Of Caskin1 Tandem Sams
          Length = 149

 Score = 32.0 bits (71), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 91  DLFWETLQEMGRRRLVNDKTFKIALMTLAEVR 122
           D+ WE LQE+G  +L + K   +A+  LAE+R
Sbjct: 111 DITWEDLQEIGITKLGHQKKLMLAVRKLAELR 142


>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
 pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
 pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
          Length = 419

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 19/114 (16%)

Query: 217 KMIETFFKINKDDEAMKVFQMMRVKRMDDLG-------------LSTYRIVIDWMCKRGK 263
           +++E    +  DD ++KVF   RV+     G             LST + +  WM  +  
Sbjct: 35  RIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTA 94

Query: 264 ISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV---EEIEKPDI 314
           +     +     K GI  D   LS      LARG +R  Y V+   E+I  PD+
Sbjct: 95  VMD---LPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDV 145


>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
           From A Hyperthermophilic Archaeon
 pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
           From A Hyperthermophilic Archaeon
          Length = 497

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 101 GRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC-------EYSLEMLN-KVVKT 152
           GR  L       IA +T   V E++K+V    +  D G        ++  ++LN KV++ 
Sbjct: 365 GREHLARATLEAIAYLTRDVVDEMEKLVQIKELRVDGGATANDFLMQFQADILNRKVIRP 424

Query: 153 LCQRKLVVEAKYLI-LKLSEWIKPNEIAYGW 182
           + +    + A YL  L +  W    EIA  W
Sbjct: 425 VVKETTALGAAYLAGLAVDYWADTREIAELW 455


>pdb|3SEN|A Chain A, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|B Chain B, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|C Chain C, Structure Of Caskin1 Tandem Sams
 pdb|3SEN|D Chain D, Structure Of Caskin1 Tandem Sams
          Length = 157

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 91  DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE 123
           D+ WE LQE+G  +L + K   +A+  LAE+++
Sbjct: 119 DITWEDLQEIGITKLGHQKKLMLAVRKLAELQK 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,981,045
Number of Sequences: 62578
Number of extensions: 514157
Number of successful extensions: 1629
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 10
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)