BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048269
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZD4|PPR59_ARATH Putative pentatricopeptide repeat-containing protein At1g26500
OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1
Length = 505
Score = 630 bits (1624), Expect = e-180, Method: Compositional matrix adjust.
Identities = 294/452 (65%), Positives = 364/452 (80%)
Query: 1 APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
P++ HL+RVCTILYQQQ SP+SRL S LSS F LTHEFFLQ+CNNFPLSWRPV+ FF
Sbjct: 39 TPINQDHLLRVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFF 98
Query: 61 QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
Y+Q P F H S T N+M+ IIG SRN+DLFWE QE+G+R LVNDKTF+I L TLA
Sbjct: 99 LYSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLAS 158
Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
RELKK VN+FH+MN G Y++E +N+ V+TLC+ KLV EAK++ +KL E+IKP+EI Y
Sbjct: 159 ARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITY 218
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
+I+G+CDVGDLIEA+K+WNLM DEGF+ I+ K++ET K N+ DEA KVF +M
Sbjct: 219 RTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVS 278
Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
KR DL YR++IDW+CK G+I A + +EM +RG+ DNLT +S+IYGLL + R+
Sbjct: 279 KRGGDLDGGFYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVV 338
Query: 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
EAY +VE +E PDIS+YHGLIKGL++++RA EAT+VFR+MI+RGCEP MHTY+MLLQGHL
Sbjct: 339 EAYGLVEGVENPDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLMLLQGHL 398
Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
G+RGRKGPDPLVNFDTIFVGG++KAGK L+ KY+ER + RG+EVPRFDY+KFLHYYSNE
Sbjct: 399 GRRGRKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSKFLHYYSNE 458
Query: 421 EGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452
EGVVMFEE+ KKLREV L DLADIFQRYG+KM
Sbjct: 459 EGVVMFEEMAKKLREVSLFDLADIFQRYGEKM 490
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/480 (28%), Positives = 257/480 (53%), Gaps = 21/480 (4%)
Query: 1 APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
+ +P + RVC ++ + ++ + + + L +L+H+ +++ F + +P + FF
Sbjct: 124 SSTNPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182
Query: 61 QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
+ + Q FAH+S T+N M+ I+ K+R + L+EMG + L+ +TF IA+ A
Sbjct: 183 CWAAERQG-FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAA 241
Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
+E KK V F +M + +E +N ++ +L + KL EA+ L KL E PN + Y
Sbjct: 242 AKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTY 301
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
L+ G+C V +LIEA++IWN M D+G +P I + M+E + K +A+K+F +M+
Sbjct: 302 TVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKS 361
Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
K + +Y I+I CK+ + A ++M G++ D + +I G + +L
Sbjct: 362 KG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 420
Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
Y++++E+++ PD Y+ LIK + + AT+++ +MI+ EP++HT+ M++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIM 480
Query: 357 QGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
+ + R +KG P N T+ + GL+ GKS +A +Y+E ++++G++
Sbjct: 481 KSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMK 540
Query: 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
P DYNKF + +FEE+ ++ + G A+IF R+ + TR R + R +E
Sbjct: 541 TPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQ--MTRRRFKQRFME 598
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 236 bits (601), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 138/480 (28%), Positives = 255/480 (53%), Gaps = 21/480 (4%)
Query: 1 APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
+ +P + RVC ++ + ++ + + + L +L+H+ +++ F + +P + FF
Sbjct: 123 SSTNPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 181
Query: 61 QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
+ + Q FAH+S T+N M+ I+ K+R + L+EMG + L+ +TF IA+ A
Sbjct: 182 CWAAERQG-FAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAA 240
Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
+E KK V F +M + +E +N ++ +L + KL EA+ L KL E PN + Y
Sbjct: 241 AKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTY 300
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
L+ G+C V +LIEA++IWN M D G +P I + M+E + K +A+K+F +M+
Sbjct: 301 TVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 360
Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
K + +Y I+I CK+ + A ++M G++ D + +I G + +L
Sbjct: 361 KG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 419
Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
Y++++E+++ PD Y+ LIK + + T+++ +MI+ EP++HT+ M++
Sbjct: 420 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 479
Query: 357 QGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
+ + R +KG P N T+ + GL+ GKS +A +Y+E ++++G++
Sbjct: 480 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 539
Query: 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
P DYNKF + +FEE+ ++ + G A+IF R+ + TR R + R +E
Sbjct: 540 TPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQ--MTRRRCKQRFME 597
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/480 (28%), Positives = 254/480 (52%), Gaps = 21/480 (4%)
Query: 1 APVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFF 60
+ +P + RVC ++ + ++ + + + L +L+H+ +++ F + +P + FF
Sbjct: 124 SSTNPEEVERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFF 182
Query: 61 QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE 120
+ + Q FAH S T+N M+ I+ K+R + L+EMG + L+ +TF IA+ A
Sbjct: 183 CWAAERQG-FAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAA 241
Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180
+E KK V F +M + +E +N ++ +L + KL EA+ L KL E PN + Y
Sbjct: 242 AKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTY 301
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
L+ G+C V +LIEA++IWN M D G +P I + M+E + K +A+K+F +M+
Sbjct: 302 TVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 361
Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
K + +Y I+I CK+ + A ++M G++ D + +I G + +L
Sbjct: 362 KG-PCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 420
Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
Y++++E+++ PD Y+ LIK + + T+++ +MI+ EP++HT+ M++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 480
Query: 357 QGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
+ + R +KG P N T+ + GL+ GKS +A +Y+E ++++G++
Sbjct: 481 KSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMK 540
Query: 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRAIE 464
P DYNKF + +FEE+ ++ + G A+IF R+ + TR R + R +E
Sbjct: 541 TPLIDYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQ--MTRRRCKQRFME 598
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/431 (26%), Positives = 197/431 (45%), Gaps = 33/431 (7%)
Query: 10 RVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPC 69
+VC L ++ S E + LS C+ +T LQ+ F W Y FF + +Q
Sbjct: 104 KVCDFLNKKDTSHEDVV-KELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWAN-SQTG 161
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---RLVNDKTFKIALMTLAEVRELKK 126
+ H+ T+N MVD++GK RN DL WE + EM + +LV T + LA+ + K
Sbjct: 162 YVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNK 221
Query: 127 MVN-FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIK 185
V+ F + G + +N ++ L + + A + LKL + IKP+ + LI
Sbjct: 222 AVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIH 281
Query: 186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD- 244
G+C +A + +LM F P + +E + K+ + +V +M+ R +
Sbjct: 282 GFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYC---KEGDFRRVNEMLEEMRENG 338
Query: 245 -DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
+ + TY IV+ + K ++++A + E+M + G D SS+I+ L GR ++A
Sbjct: 339 CNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAA 398
Query: 304 KVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIK---RGCEPTMHTYIMLL 356
++ E++ + D+ +Y+ +I L R A ++ + M C P + TY LL
Sbjct: 399 EIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLL 458
Query: 357 Q-----------GHLGKRGRKGPDPLVNFDT--IFVGGLVKAGKSLDAAKYVERVMNRGV 403
+ G L K D ++ T + + GL +GK +A + E + +G+
Sbjct: 459 KMCCHKKKMKLLGILLHHMVKN-DVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGM 517
Query: 404 EVPRFDYNKFL 414
VPR K L
Sbjct: 518 -VPRDSTCKML 527
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/417 (22%), Positives = 190/417 (45%), Gaps = 19/417 (4%)
Query: 21 SPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM 80
SP+ L S+L ++ E + N F + Y FFQ+++K Q + H+ ++ M
Sbjct: 82 SPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEK-QRHYEHSVRAYHMM 140
Query: 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE 140
++ K R L W+ + M +++++N +TF I + A +++ + + F++M
Sbjct: 141 IESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLP 200
Query: 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIW 200
+L N ++ LC+ K V +A+ + + + P+ Y L++G+ +L +A +++
Sbjct: 201 PNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVF 260
Query: 201 NLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK 260
M D G P I M++ K + DEA+ + + M Y +++
Sbjct: 261 REMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF-IYSVLVHTYGT 319
Query: 261 RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISL 316
++ +A EM + G++AD +S+I R++ Y+V++E++ P+
Sbjct: 320 ENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKS 379
Query: 317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG------------ 364
+ +++ L+ EA VFR+MIK CEP TY M+++ K+
Sbjct: 380 CNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCEKKEMETADKVWKYMR 438
Query: 365 RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421
+KG P ++ ++ + GL + + A +E ++ G+ + + EE
Sbjct: 439 KKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLLIKEE 495
>sp|Q9LIL5|PP233_ARATH Putative pentatricopeptide repeat-containing protein At3g15200
OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1
Length = 523
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 193/425 (45%), Gaps = 27/425 (6%)
Query: 4 DPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYT 63
D + V I+ + S ++ L C +LT E L++ N W+P Y+ Q
Sbjct: 74 DKQSALDVHNIIKHHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLV 133
Query: 64 QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR-LVNDKTFKIALMTLAEVR 122
K Q +S+ +N ++D++GK R + F + EM +R VN+KT+++ L A
Sbjct: 134 VK-QSVHLSSSMLYNEILDVLGKMRRFEEFHQVFDEMSKRDGFVNEKTYEVLLNRYAAAH 192
Query: 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182
++ + V F + G + L + ++ LC+ K V A+ L + A
Sbjct: 193 KVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNM 252
Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM-RVK 241
++ G+C +G++ EA + W + P + MI K K +AM++++ M +
Sbjct: 253 ILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTR 312
Query: 242 RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301
R D+ + VID +C + +I +A + E+ ++G + + +T +S++ L R +
Sbjct: 313 RNPDVKICNN--VIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEK 370
Query: 302 AYKVVEEIE------KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIML 355
+++VEE+E P+ + L+K +R+++ V M K CE T Y ++
Sbjct: 371 VWELVEEMELKGGSCSPNDVTFSYLLK---YSQRSKDVDIVLERMAKNKCEMTSDLYNLM 427
Query: 356 LQGHL------------GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG- 402
+ ++ + R G P TI + GL GK +A Y + +M++G
Sbjct: 428 FRLYVQWDKEEKVREIWSEMERSGLGPDQRTYTIRIHGLHTKGKIGEALSYFQEMMSKGM 487
Query: 403 VEVPR 407
V PR
Sbjct: 488 VPEPR 492
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 19/204 (9%)
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA---YKVVEEI 309
++++ C G + +A +++ D ++ ++I L +G+L +A Y+ + +
Sbjct: 252 MILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDT 311
Query: 310 EK-PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR--- 365
+ PD+ + + +I L +R EA +VFRE+ ++G +P + TY LL+ HL K R
Sbjct: 312 RRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLK-HLCKIRRTEK 370
Query: 366 ----------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH 415
KG N D F L + +S D +ER+ E+ YN
Sbjct: 371 VWELVEEMELKGGSCSPN-DVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTSDLYNLMFR 429
Query: 416 YYSNEEGVVMFEEVGKKLREVGLA 439
Y + E+ ++ GL
Sbjct: 430 LYVQWDKEEKVREIWSEMERSGLG 453
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 25/400 (6%)
Query: 36 NLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWE 95
NL + ++ N+ P + + FF + + H++ +F+ +DI + W
Sbjct: 57 NLVNSVLKRLWNHGPKALQ----FFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWS 112
Query: 96 TLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154
+ M R+ + KTF I A + K V F M++ GC L N ++ LC
Sbjct: 113 LIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLC 172
Query: 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV 214
+ K V +A L L + + Y ++ G+C + +A ++ M + G P++
Sbjct: 173 KSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTT 232
Query: 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM 274
+ M++ FF+ + A + F M+ KR ++ + TY V+ G+I +A + +EM
Sbjct: 233 YNTMLKGFFRAGQIRHAWEFFLEMK-KRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEM 291
Query: 275 FKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRA 330
+ G+ T +++I L + + A + EE+ + P+++ Y+ LI+GL
Sbjct: 292 IREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEF 351
Query: 331 REATQVFREMIKRGCEPTMHTYIMLLQGH---------LGKRGRKGP-DPLVNFDT--IF 378
++ + M GCEP TY M+++ + LG + G D L N DT I
Sbjct: 352 SRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNIL 411
Query: 379 VGGLVKAGKSLD---AAKYVERVMNRGVEVPRFDYNKFLH 415
+ G+ +S D A K + ++ RG +F +N+ L+
Sbjct: 412 ISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLN 451
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 14/234 (5%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFF 131
N T+N M+ ++ I WE EM +R ++ T+ + E+K+ N F
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK----PNEIAYGWLIKGY 187
M G S+ N +++ LC++ V A ++ E ++ PN Y LI+G
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENA---VVMFEEMVRRGYEPNVTTYNVLIRGL 345
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL- 246
G+ ++ M +EG EP+ + MI + + ++ ++A+ +F+ M D L
Sbjct: 346 FHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM--GSGDCLP 403
Query: 247 GLSTYRIVIDWMCKRGKISQ---AYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297
L TY I+I M R + A +L EM +RG T + ++ GLL G
Sbjct: 404 NLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTG 457
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 169/364 (46%), Gaps = 24/364 (6%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--LVNDKTFKIALMTLAEVRELKKMVNF 130
++++ N +V K ++ +QEM + + TF + L + +K +
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGYCD 189
+M G + + N V+ LC+ V EA + L ++ PN + Y LI C
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377
Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249
+ EA+++ ++T +G P + + +I+ AM++F+ MR K +
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEF- 436
Query: 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309
TY ++ID +C +GK+ +A ML++M G +T +++I G + REA ++ +E+
Sbjct: 437 TYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM 496
Query: 310 EKPDIS----LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG- 364
E +S Y+ LI GL + RR +A Q+ +MI G +P +TY LL H + G
Sbjct: 497 EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT-HFCRGGD 555
Query: 365 ------------RKGPDP-LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
G +P +V + T+ + GL KAG+ A+K + + +G+ + YN
Sbjct: 556 IKKAADIVQAMTSNGCEPDIVTYGTL-ISGLCKAGRVEVASKLLRSIQMKGINLTPHAYN 614
Query: 412 KFLH 415
+
Sbjct: 615 PVIQ 618
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 167/362 (46%), Gaps = 22/362 (6%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHIM 134
TFN ++ + ++ + L++M LV D KTF + E +L + M
Sbjct: 191 TFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQM 250
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGD 192
+ GC +S +N +V C+ V +A I ++S + P++ + L+ G C G
Sbjct: 251 VEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGH 310
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
+ A +I ++M EG++P + + +I K+ + EA++V M + R TY
Sbjct: 311 VKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM-ITRDCSPNTVTYN 369
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE-- 310
+I +CK ++ +A + + +GI D T +S+I GL R A ++ EE+
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429
Query: 311 --KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGP 368
+PD Y+ LI L + EA + ++M GC ++ TY L+ G +
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREA 489
Query: 369 DPL-------------VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH 415
+ + V ++T+ + GL K+ + DAA+ +++++ G + ++ YN L
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTL-IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 416 YY 417
++
Sbjct: 549 HF 550
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 156/353 (44%), Gaps = 22/353 (6%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIM 134
T+N ++ + K + E L +M R N T+ + TL + ++++ ++
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDL 193
G + N +++ LC + A L ++ S+ +P+E Y LI C G L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451
Query: 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI 253
EA + M G S+ + +I+ F K NK EA ++F M V + + TY
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV-TYNT 510
Query: 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE--- 310
+ID +CK ++ A ++++M G + D T +S++ G +++A +V+ +
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 311 -KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR------ 363
+PDI Y LI GL + R A+++ R + +G T H Y ++QG KR
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
Query: 364 --------GRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF 408
+ P V++ +F G G +A ++ ++ +G VP F
Sbjct: 631 NLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGF-VPEF 682
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 148/344 (43%), Gaps = 57/344 (16%)
Query: 126 KMVNFFHI-MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWL 183
K+V H M+ G + + N ++K LC+ + A ++ + + + P+E + +
Sbjct: 171 KLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230
Query: 184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243
++GY + GDL A +I M + G S V+ ++ F K + ++A+ Q M +
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290
Query: 244 DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
T+ +++ +CK G + A +++ M + G + D T +S+I GL G ++EA
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350
Query: 304 KV----------------------------VEEIEK-----------PDISLYHGLIKGL 324
+V VEE + PD+ ++ LI+GL
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 325 LRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR--------------KGPDP 370
R R A ++F EM +GCEP TY ML+ L +G+
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS-LCSKGKLDEALNMLKQMELSGCARS 469
Query: 371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL 414
++ ++T+ + G KA K+ +A + + + GV YN +
Sbjct: 470 VITYNTL-IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLI 512
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 38/267 (14%)
Query: 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVN 129
+ NS+T+N ++D + KSR ++ + + +M DK T+ L ++KK +
Sbjct: 502 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561
Query: 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189
M GCE P+ + YG LI G C
Sbjct: 562 IVQAMTSNGCE----------------------------------PDIVTYGTLISGLCK 587
Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249
G + ASK+ + +G + + +I+ F+ K EA+ +F+ M +
Sbjct: 588 AGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAV 647
Query: 250 TYRIVIDWMCK-RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
+YRIV +C G I +A L E+ ++G + +L + GLL K+V
Sbjct: 648 SYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNM 707
Query: 309 I-EKPDISLYH-GLIKGLLRLRRAREA 333
+ +K S ++KGLL++R+ ++A
Sbjct: 708 VMQKARFSEEEVSMVKGLLKIRKFQDA 734
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 31/280 (11%)
Query: 183 LIKGYCDVGDLIEASKIWNLMTDE-GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241
LI+ Y E + + M DE G +P ++M+ D ++K+ ++ K
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV----DGNSLKLVEISHAK 179
Query: 242 RMDDLGL----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297
M G+ ST+ ++I +C+ ++ A MLE+M G+ D T ++++ G + G
Sbjct: 180 -MSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 298 RLREAYKVVEEIEK-----PDISLYHGLIKGLLRLRRAREATQVFREMIKR-GCEPTMHT 351
L A ++ E++ + ++S+ + ++ G + R +A +EM + G P +T
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSV-NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297
Query: 352 YIMLLQGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
+ L+ G L K G ++G DP V + GL K G+ +A + ++++
Sbjct: 298 FNTLVNG-LCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
Query: 399 MNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
+ R YN + E V E+ + L G+
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 396
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/414 (21%), Positives = 193/414 (46%), Gaps = 25/414 (6%)
Query: 10 RVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPC 69
R+C IL + +S++ + L+ + L+ ++ + F++ + Q
Sbjct: 68 RICKILTK---FTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAEN-QKG 123
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129
F H + +N +++ +GK + L W + +M ++L++ +TF + A R++K+ +
Sbjct: 124 FKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALISRRYARARKVKEAIG 183
Query: 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYC 188
FH M + G + N+++ TL + + V +A+ + K+ + +P+ +Y L++G+
Sbjct: 184 AFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWG 243
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
+L+ ++ M DEGFEP + +I K K +EA++ F M +R
Sbjct: 244 QELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEME-QRNCKPSP 302
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
+ +I+ + K++ A E G + T ++++ R+ +AYK V+E
Sbjct: 303 HIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDE 362
Query: 309 IE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR- 363
+ P+ Y ++ L+R++R++EA +V++ M CEPT+ TY ++++ K
Sbjct: 363 MRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKER 419
Query: 364 -----------GRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP 406
KG P ++ + + L K +A +Y +++ G+ P
Sbjct: 420 LDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPP 473
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 152/302 (50%), Gaps = 11/302 (3%)
Query: 73 NSITFNRMVDIIGKSRNI---DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129
N +N ++D + K R +L ++ + ++G R ND T+ I + +L ++
Sbjct: 366 NLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRP--NDVTYSILIDMFCRRGKLDTALS 423
Query: 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK-YLILKLSEWIKPNEIAYGWLIKGYC 188
F M D G + S+ N ++ C+ + A+ ++ +++ ++P + Y L+ GYC
Sbjct: 424 FLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC 483
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
G + +A ++++ MT +G PSI ++ F+ +A+K+F M +
Sbjct: 484 SKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP-NR 542
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
TY ++I+ C+ G +S+A+ L+EM ++GI D + +I+GL G+ EA V+
Sbjct: 543 VTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG 602
Query: 309 IEKPDISL----YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
+ K + L Y GL+ G R + EA V +EM++RG + + Y +L+ G L +
Sbjct: 603 LHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKD 662
Query: 365 RK 366
RK
Sbjct: 663 RK 664
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 28/344 (8%)
Query: 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKP 175
+L E+++L + M GC+ ++ N ++ LC+++ V EA + L+ + +KP
Sbjct: 236 SLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKP 295
Query: 176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235
+ + Y L+ G C V + ++ + M F PS V ++E K K +EA+ +
Sbjct: 296 DVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNL- 354
Query: 236 QMMRVKRMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY 291
VKR+ D G+S Y +ID +CK K +A + + M K G+ +++T S +I
Sbjct: 355 ----VKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILID 410
Query: 292 GLLARGRLREAYKVVEEIEKPDISL----YHGLIKGLLRLRRAREATQVFREMIKRGCEP 347
RG+L A + E+ + L Y+ LI G + A EMI + EP
Sbjct: 411 MFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEP 470
Query: 348 TMHTYIMLLQGHLGKRGR-------------KGPDPLVNFDTIFVGGLVKAGKSLDAAKY 394
T+ TY L+ G+ K G+ KG P + T + GL +AG DA K
Sbjct: 471 TVVTYTSLMGGYCSK-GKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKL 529
Query: 395 VERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
+ V+ R YN + Y E + E K++ E G+
Sbjct: 530 FNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI 573
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 152/368 (41%), Gaps = 53/368 (14%)
Query: 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYG 181
++ K + +H M G S+ ++ L + L+ +A L +++EW +KPN + Y
Sbjct: 487 KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYN 546
Query: 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPS-----------------------IDVVDK- 217
+I+GYC+ GD+ +A + MT++G P +D + K
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKG 606
Query: 218 -----------MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266
++ F + K +EA+ V Q M V+R DL L Y ++ID K
Sbjct: 607 NCELNEICYTGLLHGFCREGKLEEALSVCQEM-VQRGVDLDLVCYGVLIDGSLKHKDRKL 665
Query: 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV----VEEIEKPDISLYHGLIK 322
+ +L+EM RG++ D++ +S+I G +EA+ + + E P+ Y +I
Sbjct: 666 FFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVIN 725
Query: 323 GLLRLRRAREATQVFREMIKRGCEPTMHTY----IMLLQGHLGKRGR--------KGPDP 370
GL + EA + +M P TY +L +G + + KG
Sbjct: 726 GLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLA 785
Query: 371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVG 430
+ + G + G+ +A++ + R++ GV Y ++ V E+
Sbjct: 786 NTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELW 845
Query: 431 KKLREVGL 438
+ E G+
Sbjct: 846 NSMTEKGI 853
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 115/245 (46%), Gaps = 19/245 (7%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL-AEVRELKKMVNFFHI 133
+ + ++D K ++ LF+ L+EM R L D +++ ++ + K+ + +
Sbjct: 648 VCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDL 707
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK-PNEIAYGW----LIKGYC 188
M + GC + V+ LC+ V EA+ L K+ PN++ YG L KG
Sbjct: 708 MINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEV 767
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
D+ +E + N + +G + + +I F + + +EA ++ + RM G+
Sbjct: 768 DMQKAVE---LHNAIL-KGLLANTATYNMLIRGFCRQGRIEEASEL-----ITRMIGDGV 818
Query: 249 S----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304
S TY +I+ +C+R + +A + M ++GI D + +++I+G G + +A +
Sbjct: 819 SPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATE 878
Query: 305 VVEEI 309
+ E+
Sbjct: 879 LRNEM 883
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
+KP+++ Y +I GD EA IW+LM +EG P+ +I K +EA
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737
Query: 233 KVFQMMR------------------VKRMDDL------------GL----STYRIVIDWM 258
+ M+ K D+ GL +TY ++I
Sbjct: 738 VLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGF 797
Query: 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV----VEEIEKPDI 314
C++G+I +A ++ M G+ D +T +++I L R +++A ++ E+ +PD
Sbjct: 798 CRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDR 857
Query: 315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT 351
Y+ LI G +AT++ EM+++G P T
Sbjct: 858 VAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 117/262 (44%), Gaps = 28/262 (10%)
Query: 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI 255
A +++N M G P + + +I + ++ A ++ M D + + Y ++I
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCD-VNIVPYNVLI 269
Query: 256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----K 311
D +CK+ K+ +A + +++ + ++ D +T +++YGL ++++E+
Sbjct: 270 DGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFS 329
Query: 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPL 371
P + L++GL + + EA + + ++ G P + Y L+ +GRK +
Sbjct: 330 PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLC--KGRKFHEAE 387
Query: 372 VNFD--------------TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYY 417
+ FD +I + + GK A ++ +++ G+++ + YN ++ +
Sbjct: 388 LLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGH 447
Query: 418 ------SNEEGVVMFEEVGKKL 433
S EG M E + KKL
Sbjct: 448 CKFGDISAAEG-FMAEMINKKL 468
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 64 QKAQPCFA-HNSITFNRMVDIIGKSR-NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121
K QP + N +T+ +DI+ K ++ E + + L N T+ + +
Sbjct: 741 SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQ 800
Query: 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAY 180
+++ M G ++ LC+R V +A L ++E I+P+ +AY
Sbjct: 801 GRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAY 860
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211
LI G C G++ +A+++ N M +G P+
Sbjct: 861 NTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 162/344 (47%), Gaps = 45/344 (13%)
Query: 57 YLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--RLVNDKTFKIA 114
Y FF + K QP + H+ + MV I+ K R W ++EM + +L+ + F +
Sbjct: 131 YRFFVWAAK-QPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVL 189
Query: 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV--------------- 159
+ A +KK + M G E + ++ LC+ V
Sbjct: 190 VQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFP 249
Query: 160 -------------------VEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEASKI 199
+EAKY++++++E +P+ + Y L+ GY + G + +A +
Sbjct: 250 VNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDL 309
Query: 200 WNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF-QMMRVKRMDDLGLSTYRIVIDWM 258
M GFEP+ + +I+ K+++ +EAMKVF +M R + D + TY ++
Sbjct: 310 LRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD--VVTYTALVSGF 367
Query: 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDI 314
CK GKI + Y +L++M K+G+ LT I+ + E +++E++ + PDI
Sbjct: 368 CKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDI 427
Query: 315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
+Y+ +I+ +L +EA +++ EM + G P + T+++++ G
Sbjct: 428 GIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMING 471
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 126 KMVNFFHIMNDC---GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYG 181
KM + + ++ D G E + +++ LC+ + EA + +++ + + + + Y
Sbjct: 302 KMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYT 361
Query: 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR-V 240
L+ G+C G + + + + M +G PS ++ K +E +++ + MR +
Sbjct: 362 ALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQI 421
Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
+ D+G+ Y +VI CK G++ +A + EM + G+ T +I GL ++G L
Sbjct: 422 EYHPDIGI--YNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLL 479
Query: 301 EA 302
EA
Sbjct: 480 EA 481
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/306 (18%), Positives = 128/306 (41%), Gaps = 12/306 (3%)
Query: 63 TQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEV 121
Q + F + + + ++ + + ++ L++M RR N + + + L +V
Sbjct: 276 VQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKV 335
Query: 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK--LSEWIKPNEIA 179
+++ + F M CE + +V C+ ++ Y++L + + + P+E+
Sbjct: 336 DRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWG-KIDKCYIVLDDMIKKGLMPSELT 394
Query: 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239
Y ++ + E ++ M + P I + + +I K+ + EA++++ M
Sbjct: 395 YMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEME 454
Query: 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL--TLSSIIYGLLARG 297
+ G+ T+ I+I+ + +G + +A +EM RG+ + + TL ++ +L
Sbjct: 455 ENGLSP-GVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDK 513
Query: 298 RLREAYKVVEEIEKPDISLYHGL-----IKGLLRLRRAREATQVFREMIKRGCEPTMHTY 352
+L A V I + L I L +EA EMI+ P T+
Sbjct: 514 KLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTF 573
Query: 353 IMLLQG 358
L++G
Sbjct: 574 AKLMKG 579
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 166/378 (43%), Gaps = 25/378 (6%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHI 133
I FNR+ I K++ +L ++M + + + T I + R+L +
Sbjct: 89 IDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGK 148
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGD 192
+ G E + N ++ LC V EA L+ ++ E KP I L+ G C G
Sbjct: 149 IMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGK 208
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
+ +A + + M + GF+P+ ++ K + AM++ + M +R L Y
Sbjct: 209 VSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKYS 267
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK- 311
I+ID +CK G + A+ + EM +G +AD +T +++I G GR + K++ ++ K
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 312 ---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR--- 365
P++ + LI ++ + REA Q+ +EM++RG P TY L+ G K R
Sbjct: 328 KISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC-KENRLEE 386
Query: 366 ----------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH 415
KG DP + I + G KA + D + + RGV YN +
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446
Query: 416 YYSNEEGVVMFEEVGKKL 433
+ + EV KKL
Sbjct: 447 GFCQSGKL----EVAKKL 460
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 140/295 (47%), Gaps = 7/295 (2%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMV 128
F N +T+ +++++ KS L E L++M R + D + I + L + L
Sbjct: 224 FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAF 283
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQR-KLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187
N F+ M G + + N ++ C + AK L + I PN + + LI +
Sbjct: 284 NLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSF 343
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
G L EA ++ M G P+ + +I+ F K N+ +EA+++ +M + + D
Sbjct: 344 VKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLM-ISKGCDPD 402
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307
+ T+ I+I+ CK +I + EM RG+ A+ +T ++++ G G+L A K+ +
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQ 462
Query: 308 EI----EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
E+ +PDI Y L+ GL +A ++F ++ K E + Y++++ G
Sbjct: 463 EMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHG 517
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 125/278 (44%), Gaps = 3/278 (1%)
Query: 67 QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELK 125
Q A N+IT+N ++D K ++ + + M + D TF I + + +
Sbjct: 361 QRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRID 420
Query: 126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR-KLVVEAKYLILKLSEWIKPNEIAYGWLI 184
+ F M+ G + N +V+ CQ KL V K +S ++P+ ++Y L+
Sbjct: 421 DGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILL 480
Query: 185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244
G CD G+L +A +I+ + E I + +I +K D+A +F + +K +
Sbjct: 481 DGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGV- 539
Query: 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304
L Y I+I +C++ +S+A + +M + G D LT + +I L A +
Sbjct: 540 KLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAE 599
Query: 305 VVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK 342
++EE++ +K ++ + + E + F +M+
Sbjct: 600 LIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLS 637
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 27/237 (11%)
Query: 241 KRMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR 296
K+M+ G++ T I+I+ C+ K+S A++ + ++ K G E D + ++++ GL
Sbjct: 112 KQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE 171
Query: 297 GRLREAYKVVEEI----EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY 352
R+ EA ++V+ + KP + + L+ GL + +A + M++ G +P TY
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTY 231
Query: 353 -----IMLLQGHLG---KRGRKGPDPLVNFD----TIFVGGLVKAGKSLDAAKYVERVMN 400
+M G + RK + + D +I + GL K G +A +
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 291
Query: 401 RGVEVPRFDYNKFLHYYSN----EEGVVMFEEVGKK---LREVGLADLADIFQRYGK 450
+G + YN + + N ++G + ++ K+ V + L D F + GK
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK 348
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/288 (19%), Positives = 122/288 (42%), Gaps = 41/288 (14%)
Query: 165 LILKLSEWIKPNEIAYGW-----LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219
L+L L + ++ IA+ +I +C L A + G+EP + + ++
Sbjct: 106 LVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLL 165
Query: 220 ETFFKINKDDEAMKVFQMMRVKRMDDLG----LSTYRIVIDWMCKRGKISQAYTMLEEMF 275
+ EA+++ V RM ++G L T +++ +C GK+S A +++ M
Sbjct: 166 NGLCLECRVSEALEL-----VDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220
Query: 276 KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISL----YHGLIKGLLRLRRAR 331
+ G + + +T ++ + G+ A +++ ++E+ +I L Y +I GL +
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLD 280
Query: 332 EATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDA 391
A +F EM +G + + TY +GG AG+ D
Sbjct: 281 NAFNLFNEMEIKGFKADIITY-----------------------NTLIGGFCNAGRWDDG 317
Query: 392 AKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLA 439
AK + ++ R + ++ + + E + +++ K++ + G+A
Sbjct: 318 AKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 171/377 (45%), Gaps = 57/377 (15%)
Query: 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV 149
IDLF + +Q R L + F L +A+ + +++ FH M CG + L N V
Sbjct: 54 IDLFCKMIQS---RPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIV 110
Query: 150 VKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208
+ LC+ V A ++ K+ ++ +P+ + LI G+C + +A + + M + GF
Sbjct: 111 INCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGF 170
Query: 209 EPSIDVVDKMIETFFKINKDDEAMKVF--------------------------------Q 236
P + + + +I+ KI ++A+++F +
Sbjct: 171 RPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAAR 230
Query: 237 MMRVKRMDDL--GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
+MR M D+ + T+ VID K GK S+A + EEM +R ++ D T +S+I GL
Sbjct: 231 LMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLC 290
Query: 295 ARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350
GR+ EA ++++ + PD+ Y+ LI G + +R E T++FREM +RG
Sbjct: 291 MHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTI 350
Query: 351 TYIMLLQGHLGKRGRKGPD------------PLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
TY ++QG+ + GR PD P + +I + GL + A E +
Sbjct: 351 TYNTIIQGYF-QAGR--PDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENM 407
Query: 399 MNRGVEVPRFDYNKFLH 415
+E+ YN +H
Sbjct: 408 QKSEIELDITTYNIVIH 424
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 11/207 (5%)
Query: 147 NKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205
N ++ LC V EAK ++ L +++ P+ + Y LI G+C + E +K++ M
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ 342
Query: 206 EGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL-GLSTYRIVIDWMCKRGKI 264
G + +I+ +F+ + D A ++F RMD + TY I++ +C ++
Sbjct: 343 RGLVGDTITYNTIIQGYFQAGRPDAAQEIFS-----RMDSRPNIRTYSILLYGLCMNWRV 397
Query: 265 SQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGL 320
+A + E M K IE D T + +I+G+ G + +A+ + + KPD+ Y +
Sbjct: 398 EKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTM 457
Query: 321 IKGLLRLRRAREATQVFREMIKRGCEP 347
I G R R+ ++ ++R+M + G P
Sbjct: 458 ISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 12/205 (5%)
Query: 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
+ P+ Y LI G C G + EA ++ +LM +G P + + +I F K + DE
Sbjct: 275 VDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 334
Query: 233 KVFQMMRVKRMDDLGLS-TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL-TLSSII 290
K+F+ M + + +G + TY +I + G+ A +E+F R N+ T S ++
Sbjct: 335 KLFREMAQRGL--VGDTITYNTIIQGYFQAGRPDAA----QEIFSRMDSRPNIRTYSILL 388
Query: 291 YGLLARGRLREAYKVVEEIEKP----DISLYHGLIKGLLRLRRAREATQVFREMIKRGCE 346
YGL R+ +A + E ++K DI+ Y+ +I G+ ++ +A +FR + +G +
Sbjct: 389 YGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLK 448
Query: 347 PTMHTYIMLLQGHLGKRGRKGPDPL 371
P + +Y ++ G KR D L
Sbjct: 449 PDVVSYTTMISGFCRKRQWDKSDLL 473
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 12/226 (5%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND----KTFKIALMTLAEVRELKKMV 128
N ITF ++D+ K + +EM RR + D + L V E K+M+
Sbjct: 243 NVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML 302
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGY 187
+ +M GC + N ++ C+ K V E L ++++ + + I Y +I+GY
Sbjct: 303 D---LMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
G A +I++ M P+I ++ + ++A+ +F+ M+ K +L
Sbjct: 360 FQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQ-KSEIELD 415
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGL 293
++TY IVI MCK G + A+ + + +G++ D ++ +++I G
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGF 461
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 28/323 (8%)
Query: 147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206
N+++K C+ + L L + P+ + Y LI G C G+ A ++ +LM D
Sbjct: 432 NELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491
Query: 207 GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266
G P MI++ K + +EA +F + K ++ + Y +ID CK GK+ +
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAGKVDE 550
Query: 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIK 322
A+ MLE+M + ++LT +++I+GL A G+L+EA + E++ K P +S LI
Sbjct: 551 AHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIH 610
Query: 323 GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGL 382
LL+ A F++M+ G +P HTY T F+
Sbjct: 611 RLLKDGDFDHAYSRFQQMLSSGTKPDAHTY-----------------------TTFIQTY 647
Query: 383 VKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLA 442
+ G+ LDA + ++ GV F Y+ + Y + +V K++R+ G
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Query: 443 DIFQRYGKKMATRERRRNRAIEP 465
F K + + + + EP
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEP 730
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/453 (22%), Positives = 193/453 (42%), Gaps = 65/453 (14%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEM---GRRRLVNDKTFKIALMTLAEVRELKKMVNFFH 132
T+ ++ + +++D ++ EM G RR N+ + + L R + + ++ F
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR--NEVAYTHLIHGLCVARRIDEAMDLFV 312
Query: 133 IMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVG 191
M D C ++ ++K+LC + EA L+ ++ E IKPN Y LI C
Sbjct: 313 KMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372
Query: 192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD------ 245
+A ++ M ++G P++ + +I + K ++A+ V ++M +++
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432
Query: 246 --------------LG-------------LSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278
+G + TY +ID C+ G AY +L M RG
Sbjct: 433 ELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 279 IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREAT 334
+ D T +S+I L R+ EA + + +E+ P++ +Y LI G + + EA
Sbjct: 493 LVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAH 552
Query: 335 QVFREMIKRGCEPTMHTYIMLLQGHLG------------KRGRKGPDPLVNFDTIFVGGL 382
+ +M+ + C P T+ L+ G K + G P V+ DTI + L
Sbjct: 553 LMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRL 612
Query: 383 VKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLA-DL 441
+K G A +++++ G + Y F+ Y E ++ E++ K+RE G++ DL
Sbjct: 613 LKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL 672
Query: 442 ---ADIFQRYGKKMATR------ERRRNRAIEP 465
+ + + YG T +R R+ EP
Sbjct: 673 FTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEP 705
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238
Y L+ G + E +++ M ++ P+I +KM+ + K+ +EA + +
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244
Query: 239 RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298
V+ D TY +I C+R + A+ + EM +G + + + +I+GL R
Sbjct: 245 -VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Query: 299 LREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM 354
+ EA + +++ P + Y LIK L R EA + +EM + G +P +HTY +
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 355 LLQG------------HLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG 402
L+ LG+ KG P V + G K G DA VE + +R
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 403 VEVPRFDYNKFLHYY 417
+ YN+ + Y
Sbjct: 424 LSPNTRTYNELIKGY 438
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 113/257 (43%), Gaps = 24/257 (9%)
Query: 183 LIKGYCDVGDLIEASKIWNLMT-DEGFEPS----IDVVDKMIETFFKINKDDEAMKVFQM 237
+IK VGD + + M DE FE I + ++ + + DE +V+
Sbjct: 149 MIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYME 208
Query: 238 MRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297
M ++ + TY +++ CK G + +A + ++ + G++ D T +S+I G R
Sbjct: 209 MLEDKVCP-NIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRK 267
Query: 298 RLREAYKVVEEI-----EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY 352
L A+KV E+ + +++ H LI GL RR EA +F +M C PT+ TY
Sbjct: 268 DLDSAFKVFNEMPLKGCRRNEVAYTH-LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTY 326
Query: 353 IMLLQGHLGKRGRK------------GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400
+L++ G + G P ++ T+ + L K A + + +++
Sbjct: 327 TVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 401 RGVEVPRFDYNKFLHYY 417
+G+ YN ++ Y
Sbjct: 387 KGLMPNVITYNALINGY 403
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 60/249 (24%)
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRK---------------------LVVEAKYLILKLSEW 172
M D GCE S ++K L + K VVE L+ K+ E
Sbjct: 698 MRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVE---LLEKMVEH 754
Query: 173 -IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMT-DEGFEPSIDVVDKMIETFFKINKDDE 230
+ PN +Y LI G C+VG+L A K+++ M +EG PS V + ++ K+ K +E
Sbjct: 755 SVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNE 814
Query: 231 AMKVF-QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289
A KV M+ V + L + +++I + K+G+ + ++ + + + G D L I
Sbjct: 815 AAKVVDDMICVGHLPQ--LESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKII 872
Query: 290 IYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM 349
I G+ +G + Y ++F M K GC+ +
Sbjct: 873 IDGVGKQGLVEAFY-------------------------------ELFNVMEKNGCKFSS 901
Query: 350 HTYIMLLQG 358
TY +L++G
Sbjct: 902 QTYSLLIEG 910
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 112 bits (280), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/377 (24%), Positives = 167/377 (44%), Gaps = 21/377 (5%)
Query: 59 FFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMT 117
FQ +++P I F+R+ ++ +++ DL + ++M + + N T I +
Sbjct: 59 LFQEMTRSRP--RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINC 116
Query: 118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWI-KPN 176
R+L + + G E + ++ LC V EA L+ ++ E KP
Sbjct: 117 CCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPT 176
Query: 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236
I L+ G C G + +A + + M + GF+P+ +++ K + AM++ +
Sbjct: 177 LITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLR 236
Query: 237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR 296
M +++ L Y I+ID +CK G + A+ + EM +G +AD + +++I G
Sbjct: 237 KMEERKI-KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYA 295
Query: 297 GRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY 352
GR + K++ ++ K PD+ + LI ++ + REA ++ +EMI+RG P TY
Sbjct: 296 GRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTY 355
Query: 353 IMLLQG-----HLGKRGR-------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400
L+ G L K KG P + I + G KA D + ++
Sbjct: 356 TSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSL 415
Query: 401 RGVEVPRFDYNKFLHYY 417
RGV YN + +
Sbjct: 416 RGVVADTVTYNTLIQGF 432
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 166/389 (42%), Gaps = 21/389 (5%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMV 128
F N +T+ ++ ++ KS L E L++M R++ D + I + L + L
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAF 267
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLC-QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187
N F+ M G + + + +++ C + AK L + I P+ +A+ LI +
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
G L EA ++ M G P +I+ F K N+ D+A + +M V +
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM-VSKGCGPN 386
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307
+ T+ I+I+ CK I + +M RG+ AD +T +++I G G+L A ++ +
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 308 EIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR 363
E+ +PDI Y L+ GL +A ++F ++ K E + Y +++ G
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506
Query: 364 G------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDY 410
KG P V I +GGL K G SL A + R M P Y
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG-SLSEADLLFRKMEEDGHSPNGCTY 565
Query: 411 NKFLHYYSNEEGVVMFEEVGKKLREVGLA 439
N + + E ++ ++++ G +
Sbjct: 566 NILIRAHLGEGDATKSAKLIEEIKRCGFS 594
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 130/282 (46%), Gaps = 3/282 (1%)
Query: 62 YTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAE 120
+ + Q + +++T+ ++D K +D L M + N +TF I + +
Sbjct: 340 HKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCK 399
Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIA 179
+ + F M+ G N +++ C+ + AK L ++ S ++P+ ++
Sbjct: 400 ANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS 459
Query: 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239
Y L+ G CD G+ +A +I+ + E I + + +I +K D+A +F +
Sbjct: 460 YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 519
Query: 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL 299
+K + + TY I+I +CK+G +S+A + +M + G + T + +I L G
Sbjct: 520 LKGVKP-DVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDA 578
Query: 300 REAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI 341
++ K++EEI++ S+ +K ++ + + F +M+
Sbjct: 579 TKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDML 620
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIV 254
+A ++ MT P + ++ + + D + + + M +K + L T I+
Sbjct: 55 DAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAH-NLYTLSIM 113
Query: 255 IDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI----E 310
I+ C+ K+S A++ + ++ K G E D +T S++I GL GR+ EA ++V+ +
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173
Query: 311 KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY-----IMLLQGHLG---K 362
KP + + L+ GL + +A + M++ G +P TY +M G +
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233
Query: 363 RGRKGPDPLVNFD----TIFVGGLVKAGKSLDAA 392
RK + + D +I + GL K G SLD A
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDG-SLDNA 266
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 146/327 (44%), Gaps = 22/327 (6%)
Query: 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCD 189
F + G +++ N V+ +CQ + EA +L+L + + P+ I+Y ++ GYC
Sbjct: 234 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 293
Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF-QMMRVKRMDDLGL 248
G+L + K+ +M +G +P+ + +I +I K EA + F +M+R + D
Sbjct: 294 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPD--T 351
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
Y +ID CKRG I A EM R I D LT ++II G G + EA K+ E
Sbjct: 352 VVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE 411
Query: 309 I----EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
+ +PD + LI G + ++A +V MI+ GC P + TY L+ G L K G
Sbjct: 412 MFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG-LCKEG 470
Query: 365 -------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
+ G P + V GL K+G +A K V G+ Y
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530
Query: 412 KFLHYYSNEEGVVMFEEVGKKLREVGL 438
+ Y + +E+ K++ GL
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGL 557
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 143/295 (48%), Gaps = 7/295 (2%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMV 128
+ + I+++ +V+ + +D W+ ++ M R+ L N + + L + +L +
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGY 187
F M G + ++ C+R + A ++ S I P+ + Y +I G+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
C +GD++EA K+++ M +G EP ++I + K +A +V M ++
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPN 455
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307
+ TY +ID +CK G + A +L EM+K G++ + T +SI+ GL G + EA K+V
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 308 EIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
E E D Y L+ + +A ++ +EM+ +G +PT+ T+ +L+ G
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNG 570
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 161/362 (44%), Gaps = 29/362 (8%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFF 131
+++ + ++D K +I + EM R + D T+ + ++ ++ + F
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLF 409
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGYCDV 190
H M G E +++ C+ + +A + + PN + Y LI G C
Sbjct: 410 HEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKE 469
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS- 249
GDL A+++ + M G +P+I + ++ K +EA+K+ V + GL+
Sbjct: 470 GDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL-----VGEFEAAGLNA 524
Query: 250 ---TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV 306
TY ++D CK G++ +A +L+EM +G++ +T + ++ G G L + K++
Sbjct: 525 DTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLL 584
Query: 307 EEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362
+ P+ + ++ L+K + AT ++++M RG P TY L++GH
Sbjct: 585 NWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 644
Query: 363 RGR------------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR--F 408
R KG V+ ++ + G +K K L+A + +++ G+ + F
Sbjct: 645 RNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
Query: 409 DY 410
D+
Sbjct: 705 DF 706
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 28/251 (11%)
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK-INKDDEAMKVFQMMRVKRMDDLG 247
D G L EA +++ M + G S+D + + K K A+ VF + ++G
Sbjct: 187 DFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF-----REFPEVG 241
Query: 248 L----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
+ ++Y IVI ++C+ G+I +A+ +L M +G D ++ S+++ G G L + +
Sbjct: 242 VCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 301
Query: 304 KVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
K++E ++ KP+ +Y +I L R+ + EA + F EMI++G P Y L+ G
Sbjct: 302 KLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDG- 360
Query: 360 LGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP 406
KRG + P V T + G + G ++A K + +G+E
Sbjct: 361 FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 407 RFDYNKFLHYY 417
+ + ++ Y
Sbjct: 421 SVTFTELINGY 431
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 121/276 (43%), Gaps = 3/276 (1%)
Query: 42 FLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMG 101
F ++ N + + F + Q + N +T+ ++D + K ++D E L EM
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW 483
Query: 102 RRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160
+ L N T+ + L + +++ V G ++ C+ +
Sbjct: 484 KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMD 543
Query: 161 EAKYLILK-LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219
+A+ ++ + L + ++P + + L+ G+C G L + K+ N M +G P+ + ++
Sbjct: 544 KAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLV 603
Query: 220 ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI 279
+ + N A +++ M + + G TY ++ CK + +A+ + +EM +G
Sbjct: 604 KQYCIRNNLKAATAIYKDMCSRGVGPDG-KTYENLVKGHCKARNMKEAWFLFQEMKGKGF 662
Query: 280 EADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDIS 315
T S +I G L R + EA +V +++ + ++
Sbjct: 663 SVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLA 698
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/429 (23%), Positives = 189/429 (44%), Gaps = 23/429 (5%)
Query: 6 GHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQK 65
G + ++ IL + +S +L +L+ +L +++ + + Y FF + K
Sbjct: 65 GEVEKIYRIL-RNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATK 123
Query: 66 AQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--RLVNDKTFKIALMTLAEVRE 123
QP + H+ MV I+ K R W ++EM + L+ + F + + A
Sbjct: 124 -QPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANM 182
Query: 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWL 183
+KK V M G E + ++ LC+ V EA + + E PN + L
Sbjct: 183 VKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSL 242
Query: 184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243
+ G+C G L+EA ++ M + G EP I V ++ + K +A + MR KR
Sbjct: 243 LYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMR-KRG 301
Query: 244 DDLGLSTYRIVIDWMCKRGK-ISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302
+ ++ Y ++I +C+ K + +A + EM + G EAD +T +++I G G + +
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKG 361
Query: 303 YKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY--IMLL 356
Y V++++ K P Y ++ + + E ++ +M +RGC P + Y ++ L
Sbjct: 362 YSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRL 421
Query: 357 QGHLGKRGR----------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV-EV 405
LG+ G P V+ I + G G ++A + + +++RG+
Sbjct: 422 ACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSA 481
Query: 406 PRFDYNKFL 414
P++ K L
Sbjct: 482 PQYGTLKSL 490
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 168/365 (46%), Gaps = 34/365 (9%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHI 133
+T+N ++ + K++ +D E L M + ++ D T+ L + K+ + F
Sbjct: 232 VTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKK 291
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDVGD 192
M G E + + ++ LC+ +EA+ + +++ +KP YG L++GY G
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 351
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
L+E + +LM G P V +I + K K D+AM VF MR + ++ + TY
Sbjct: 352 LVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV-TYG 410
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKP 312
VI +CK G++ A E+M G+ N+ +S+I+GL + A +++ E+
Sbjct: 411 AVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDR 470
Query: 313 DISL----YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGP 368
I L ++ +I + R E+ ++F M++ G +P + TY L+ G+
Sbjct: 471 GICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGY--------- 521
Query: 369 DPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN----EEGVV 424
AGK +A K + +++ G++ Y+ ++ Y E+ +V
Sbjct: 522 --------------CLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567
Query: 425 MFEEV 429
+F+E+
Sbjct: 568 LFKEM 572
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/313 (22%), Positives = 146/313 (46%), Gaps = 19/313 (6%)
Query: 62 YTQKAQPCFAHNSITFNRMVDIIGKSRNID---LFWETLQEMGRRRLVNDKTFKIALMTL 118
+++ Q N++T+ ++ I+ KS ++ L++E + + G + + + L
Sbjct: 394 FSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP--GNIVYNSLIHGL 451
Query: 119 AEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNE 177
+ ++ M D G + N ++ + C+ V+E++ L L + +KPN
Sbjct: 452 CTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV 511
Query: 178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM 237
I Y LI GYC G + EA K+ + M G +P+ +I + KI++ ++A+ +F
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF-- 569
Query: 238 MRVKRMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGL 293
K M+ G+S TY I++ + + + + A + + + G + + T + I++GL
Sbjct: 570 ---KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626
Query: 294 LARGRLREAYKVVEEIEKPDISL----YHGLIKGLLRLRRAREATQVFREMIKRGCEPTM 349
+A ++ + + D+ L ++ +I LL++ R EA +F G P
Sbjct: 627 CKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNY 686
Query: 350 HTYIMLLQGHLGK 362
TY ++ + +G+
Sbjct: 687 WTYRLMAENIIGQ 699
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 29/294 (9%)
Query: 169 LSEWIKPNEIAYGWLIKGYCDVGDLIEASKI-WNLMTDEGFEPSIDVVDKMIETFFKINK 227
+ + + + IA+ L+KG C +A I MT+ G P++ + +++ N+
Sbjct: 114 IKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENR 173
Query: 228 DDEAMKVFQMMRVKRMDDLG------LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA 281
EA+++ MM DD G + +Y VI+ K G +AY+ EM RGI
Sbjct: 174 SQEALELLHMM----ADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILP 229
Query: 282 DNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVF 337
D +T +SII L + +A +V+ + K PD Y+ ++ G + +EA
Sbjct: 230 DVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFL 289
Query: 338 REMIKRGCEPTMHTYIMLLQGHLGKRGR-------------KGPDPLVNFDTIFVGGLVK 384
++M G EP + TY +L+ +L K GR +G P + + G
Sbjct: 290 KKMRSDGVEPDVVTYSLLMD-YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYAT 348
Query: 385 AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
G ++ ++ ++ G+ + ++ + Y+ + V V K+R+ GL
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGL 402
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 29/199 (14%)
Query: 225 INKDDEAMKVFQMMRVKRM--DDL--GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE 280
+ +D A V + R+ R D++ L TY I+I C+ G++ + L + K+G
Sbjct: 60 VARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFR 119
Query: 281 ADNLTLSSIIYGLLARGRLREAYKVV-----EEIEKPDISLYHGLIKGLLRLRRAREATQ 335
D + + ++ GL A R +A +V E P++ Y+ L+KGL R++EA +
Sbjct: 120 VDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE 179
Query: 336 VFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYV 395
+ M RG P +V++ T+ + G K G S A
Sbjct: 180 LLHMMAD-------------------DRGGGSPPDVVSYTTV-INGFFKEGDSDKAYSTY 219
Query: 396 ERVMNRGVEVPRFDYNKFL 414
+++RG+ YN +
Sbjct: 220 HEMLDRGILPDVVTYNSII 238
>sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400,
mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2
SV=2
Length = 568
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 101/461 (21%), Positives = 198/461 (42%), Gaps = 35/461 (7%)
Query: 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIG 85
+ +L + +LT +I + + FF + Q ++H I +N M+DI+
Sbjct: 112 MEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGH-QEHYSHEPIAYNEMIDILS 170
Query: 86 ----KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMN------ 135
K++ + + L M R N+KT + + L +R+ + H+
Sbjct: 171 STKYKNKQFRIVIDMLDYMKR----NNKTVVLVDVLLEILRKYCERY-LTHVQKFAKRKR 225
Query: 136 -DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194
+ + N ++ LC+ LV E + L+ ++ +KP+ + L G+C V D
Sbjct: 226 IRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPK 285
Query: 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK--RMDDLGLSTYR 252
+A K+ M + G +P I+TF + DEA +F M K + T+
Sbjct: 286 KAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAPTAKTFA 345
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK- 311
++I + K K + + ++ M G D T +I G+ ++ EAYK ++E+
Sbjct: 346 LMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFLDEMSNK 405
Query: 312 ---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGP 368
PDI Y+ ++ L R+ EA +++ M++ C P++ TY ML+ G
Sbjct: 406 GYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEMDDPDGA 465
Query: 369 ----------DPLVNFDT--IFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHY 416
D + + +T + GL ++ +A +E V+N+G+++P ++ FL
Sbjct: 466 FNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVFDSFLMR 525
Query: 417 YSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRER 457
S + +V + +++ +A F K+ +T+ R
Sbjct: 526 LSEVGNLKAIHKVSEHMKKFYNHSMARRFALSEKRKSTKLR 566
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 108 bits (271), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 167/382 (43%), Gaps = 21/382 (5%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM-TLAEVRELKKMVNFFHIM 134
T+ +V+ + K +IDL L++M + ++ D ++ L + + +N F M
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 281
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDL 193
++ G ++ N +++ LC +A L+ + E I PN + + LI + G L
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341
Query: 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI 253
+EA K+++ M +P I +I F ++ DEA +F++M K + TY
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNT 400
Query: 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV----VEEI 309
+I CK ++ + + EM +RG+ + +T +++I GL G A K+ V +
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 310 EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR---- 365
PDI Y L+ GL + + +A VF + K EP ++TY ++++G + K G+
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG-MCKAGKVEDG 519
Query: 366 ---------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHY 416
KG P V T + G + G +A + G YN +
Sbjct: 520 WDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579
Query: 417 YSNEEGVVMFEEVGKKLREVGL 438
+ E+ K++R G
Sbjct: 580 RLRDGDKAASAELIKEMRSCGF 601
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 135/291 (46%), Gaps = 18/291 (6%)
Query: 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEA 196
GC+ L VV LC+R + A L+ K+ + I+ + + Y +I C+ ++ +A
Sbjct: 215 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDA 274
Query: 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256
++ M ++G P++ + +I + +A ++ M ++R + + T+ +ID
Sbjct: 275 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALID 333
Query: 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE-EIEK---P 312
K GK+ +A + +EM KR I+ D T SS+I G RL EA + E I K P
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393
Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH------------L 360
++ Y+ LIKG + +R E ++FREM +RG TY L+QG
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453
Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
K G P + +I + GL K GK A E + +E + YN
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 504
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 172/389 (44%), Gaps = 48/389 (12%)
Query: 60 FQYTQKAQPCFAHNSITFNRMV-DIIGK-SRNI----------DLFWETLQEMGRRRLVN 107
F +KA P F+ + F+ D K SRN+ DLF E +Q R L +
Sbjct: 23 FAQLRKASPLFSLRGVYFSAASYDYREKLSRNVLLDLKLDDAVDLFGEMVQS---RPLPS 79
Query: 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLIL 167
F L +A++ + +++ M + Y L N ++ C+R + A ++
Sbjct: 80 IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139
Query: 168 KLSEW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226
K+ + +P+ + L+ GYC + EA + + M ++P+ + +I F N
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHN 199
Query: 227 KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL 286
K EA+ + M V R L TY V++ +CKRG I A ++L++M K IEAD +
Sbjct: 200 KASEAVALIDRM-VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY 258
Query: 287 SSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIK 342
++II L + +A + E++ +P++ Y+ LI+ L R +A+++ +MI+
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 343 RGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG 402
R P + T+ + + VK GK ++A K + ++ R
Sbjct: 319 RKINPNVVTF-----------------------SALIDAFVKEGKLVEAEKLYDEMIKRS 355
Query: 403 VEVPRFDY----NKFLHYYSNEEGVVMFE 427
++ F Y N F + +E MFE
Sbjct: 356 IDPDIFTYSSLINGFCMHDRLDEAKHMFE 384
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 132/279 (47%), Gaps = 9/279 (3%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFF 131
N +TF+ ++D K + + EM +R + D T+ + L + + F
Sbjct: 324 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 383
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
+M C ++ N ++K C+ K V E L ++S+ + N + Y LI+G
Sbjct: 384 ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQA 443
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
GD A KI+ M +G P I +++ K K ++A+ VF+ ++ +M+ + T
Sbjct: 444 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP-DIYT 502
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
Y I+I+ MCK GK+ + + + +G++ + + +++I G +G EA + E++
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 562
Query: 311 K----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345
+ P+ Y+ LI+ LR + ++ +EM R C
Sbjct: 563 EDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM--RSC 599
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 114/246 (46%), Gaps = 17/246 (6%)
Query: 66 AQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVREL 124
++ CF N +T+N ++ K++ ++ E +EM +R LV N T+ + L + +
Sbjct: 388 SKDCFP-NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446
Query: 125 KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAY 180
F M G + + ++ LC+ K +V +YL ++P+ Y
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL---QKSKMEPDIYTY 503
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
+I+G C G + + ++ ++ +G +P++ + MI F + +EA +F+ M+
Sbjct: 504 NIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK- 562
Query: 241 KRMDDLGL---STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297
+D L TY +I + G + + +++EM G D T+S +I +L G
Sbjct: 563 ---EDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVI-NMLHDG 618
Query: 298 RLREAY 303
RL ++Y
Sbjct: 619 RLEKSY 624
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 162/359 (45%), Gaps = 36/359 (10%)
Query: 78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC 137
NR+ DII +DLF + ++ +V F L +A++ + + +++ M
Sbjct: 56 NRLSDIIKVDDAVDLFGDMVKSRPFPSIVE---FNKLLSAVAKMNKFELVISLGEQMQTL 112
Query: 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEA 196
G + L + + C+R + A ++ K+ + +P+ + L+ GYC + +A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172
Query: 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256
+ + M + G++P +I F NK EA+ + M V+R L TY V++
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM-VQRGCQPDLVTYGTVVN 231
Query: 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KP 312
+CKRG I A ++L++M K IEAD + ++II GL + +A + E++ +P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291
Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLV 372
D+ Y LI L R +A+++ +MI+R P + T+
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF-------------------- 331
Query: 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDY----NKFLHYYSNEEGVVMFE 427
+ + VK GK ++A K + ++ R ++ F Y N F + +E MFE
Sbjct: 332 ---SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 387
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 129/291 (44%), Gaps = 18/291 (6%)
Query: 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEA 196
GC+ L VV LC+R + A L+ K+ + I+ + + Y +I G C + +A
Sbjct: 218 GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 277
Query: 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256
++ M ++G P + +I + +A ++ M ++R + + T+ +ID
Sbjct: 278 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALID 336
Query: 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE-EIEK---P 312
K GK+ +A + +EM KR I+ D T SS+I G RL EA + E I K P
Sbjct: 337 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396
Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------- 364
++ Y LIKG + +R E ++FREM +RG TY L+ G R
Sbjct: 397 NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 456
Query: 365 ----RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
G P + I + GL K GK A E + +E + YN
Sbjct: 457 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYN 507
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 143/316 (45%), Gaps = 20/316 (6%)
Query: 140 EYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDLIEASK 198
E + + N ++ LC+ K + +A L ++ ++ I+P+ Y LI C+ G +AS+
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314
Query: 199 IWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM 258
+ + M + P++ +I+ F K K EA K++ M +KR D + TY +I+
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGF 373
Query: 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDI 314
C ++ +A M E M + + +T S++I G R+ E ++ E+ + +
Sbjct: 374 CMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433
Query: 315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG---------- 364
Y LI G + R A VF++M+ G P + TY +LL G L K G
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDG-LCKNGKLAKAMVVFE 492
Query: 365 ---RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421
R +P + I + G+ KAGK D + + +GV YN + + +
Sbjct: 493 YLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKG 552
Query: 422 GVVMFEEVGKKLREVG 437
+ + KK++E G
Sbjct: 553 SKEEADSLLKKMKEDG 568
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 39/288 (13%)
Query: 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKIS 265
PSI +K++ K+NK + + + + M+ LG+S TY I I+ C+R ++S
Sbjct: 81 PSIVEFNKLLSAVAKMNKFELVISLGEQMQT-----LGISHDLYTYSIFINCFCRRSQLS 135
Query: 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLI 321
A +L +M K G E D +TLSS++ G R+ +A +V+++ KPD + LI
Sbjct: 136 LALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195
Query: 322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG------------RKGP- 368
GL +A EA + +M++RGC+P + TY ++ G L KRG KG
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG-LCKRGDIDLALSLLKKMEKGKI 254
Query: 369 -DPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN-----EEG 422
+V ++TI + GL K DA + N+G+ F Y+ + N +
Sbjct: 255 EADVVIYNTI-IDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDAS 313
Query: 423 VVMFEEVGKKLRE--VGLADLADIFQRYGKKMATR---ERRRNRAIEP 465
++ + + +K+ V + L D F + GK + + R+I+P
Sbjct: 314 RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 361
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 161/379 (42%), Gaps = 52/379 (13%)
Query: 36 NLTHEFFLQICNNFPLSWRPVYLFFQYTQKA-QPCFAHNSITFNRMVDIIGKSRNIDLFW 94
L H FL + V L Q Q+ QP + +T+ +V+ + K +IDL
Sbjct: 193 TLIHGLFLH-----NKASEAVALVDQMVQRGCQP----DLVTYGTVVNGLCKRGDIDLAL 243
Query: 95 ETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153
L++M + ++ D + + L + + + +N F M++ G + + ++ L
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303
Query: 154 CQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI 212
C +A L+ + E I PN + + LI + G L+EA K+++ M +P I
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363
Query: 213 DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272
+I F ++ DEA +F++M K + TY +I CK ++ + +
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 273 EMFKRGIEADNLTLSSIIYG-----------------------------------LLARG 297
EM +RG+ + +T +++I+G L G
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482
Query: 298 RLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYI 353
+L +A V E +++ PDI Y+ +I+G+ + + + ++F + +G P + Y
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYN 542
Query: 354 MLLQGHLGKRGRKGPDPLV 372
++ G K ++ D L+
Sbjct: 543 TMISGFCRKGSKEEADSLL 561
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 146/330 (44%), Gaps = 24/330 (7%)
Query: 22 PESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMV 81
P+ +SSL SC +CN S L +K P N +TF+ ++
Sbjct: 291 PDVFTYSSLISC-----------LCNYGRWSDASRLLSDMIERKINP----NVVTFSALI 335
Query: 82 DIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHIMNDCGCE 140
D K + + EM +R + D T+ + L + + F +M C
Sbjct: 336 DAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF 395
Query: 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDVGDLIEASKI 199
++ + ++K C+ K V E L ++S+ + N + Y LI G+ D A +
Sbjct: 396 PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 455
Query: 200 WNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMC 259
+ M G P+I + +++ K K +AM VF+ ++ M+ + TY I+I+ MC
Sbjct: 456 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP-DIYTYNIMIEGMC 514
Query: 260 KRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDIS 315
K GK+ + + + +G+ + + +++I G +G EA +++++++ P+
Sbjct: 515 KAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSG 574
Query: 316 LYHGLIKGLLRLRRAREATQVFREMIKRGC 345
Y+ LI+ LR + ++ +EM R C
Sbjct: 575 TYNTLIRARLRDGDREASAELIKEM--RSC 602
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 7/252 (2%)
Query: 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA--KY 164
+ K + L L E +L F+ M + G ++ LN ++K LC+ V+A K
Sbjct: 120 SQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKI 179
Query: 165 LILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK 224
+ P+ YG LI G C G + EA K++ M ++ P++ +I
Sbjct: 180 FLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG 239
Query: 225 INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL 284
DEAM+ + M+ K ++ + TY ++D +CK G+ QA + E M RG + +
Sbjct: 240 SKNVDEAMRYLEEMKSKGIEP-NVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV 298
Query: 285 TLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREM 340
T +++I GL +++EA ++++ + KPD LY +I G + + REA EM
Sbjct: 299 TYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
Query: 341 IKRGCEPTMHTY 352
I G P T+
Sbjct: 359 ILGGITPNRLTW 370
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 128/282 (45%), Gaps = 31/282 (10%)
Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR 242
+ +GY V ++ ++++ M D +PS ++ + N+ + A K ++ MR
Sbjct: 92 ICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMR--- 148
Query: 243 MDDLGL----STYRIVIDWMCKR-GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297
++GL ++ ++I +C+ G + + EM KRG + D+ T ++I GL G
Sbjct: 149 --EIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 298 RLREAYKVVEE-IEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYI 353
R+ EA K+ E +EK P + Y LI GL + EA + EM +G EP + TY
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 354 MLLQGHLGKRGR-------------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400
L+ G L K GR +G P + T + GL K K +A + ++R+
Sbjct: 267 SLMDG-LCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNL 325
Query: 401 RGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLA 442
+G++ Y K + + + F E L E+ L +
Sbjct: 326 QGLKPDAGLYGKVISGFC---AISKFREAANFLDEMILGGIT 364
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 121/274 (44%), Gaps = 26/274 (9%)
Query: 192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD-DLGLST 250
DLI KI N + E D++ + + ++++ ++++VF M K D D
Sbjct: 72 DLIVRMKIENCVVSE------DILLSICRGYGRVHRPFDSLRVFHKM--KDFDCDPSQKA 123
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR-GRLREAYKVVEEI 309
Y V+ + + +++ A+ + M + G+ +L+ +I L G + K+ E+
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEM 183
Query: 310 EK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG- 364
K PD Y LI GL R R EA ++F EM+++ C PT+ TY L+ G G +
Sbjct: 184 PKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNV 243
Query: 365 -----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKF 413
KG +P V + + GL K G+SL A + E +M RG Y
Sbjct: 244 DEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTL 303
Query: 414 LHYYSNEEGVVMFEEVGKKLREVGLADLADIFQR 447
+ E+ + E+ ++ GL A ++ +
Sbjct: 304 ITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGK 337
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 18/285 (6%)
Query: 89 NIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN 147
+D + EM +R D T+ + L + + F M + C ++
Sbjct: 172 TVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYT 231
Query: 148 KVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206
++ LC K V EA +YL S+ I+PN Y L+ G C G ++A +++ +M
Sbjct: 232 SLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMAR 291
Query: 207 GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD-DLGLSTYRIVIDWMCKRGKIS 265
G P++ +I K K EA+++ M ++ + D GL Y VI C K
Sbjct: 292 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGL--YGKVISGFCAISKFR 349
Query: 266 QAYTMLEEMFKRGIEADNLTLS-------SIIYGLLARGRLREAYKVVEEIEKPDISL-- 316
+A L+EM GI + LT + ++ GL A R A+ + + IS+
Sbjct: 350 EAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSR-AFTLYLSMRSRGISVEV 408
Query: 317 --YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359
L+K L + ++A Q+ E++ GC P+ T+ +L+ GH
Sbjct: 409 ETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI-GH 452
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 114/248 (45%), Gaps = 15/248 (6%)
Query: 73 NSITFNRMVDIIGKSRNID----LFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128
+S T+ ++ + + ID LF E +++ +V T+ + L + + + +
Sbjct: 191 DSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVV---TYTSLINGLCGSKNVDEAM 247
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNEIAYGWLIKGY 187
+ M G E ++ + ++ LC+ ++A L + ++ +PN + Y LI G
Sbjct: 248 RYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD--- 244
C + EA ++ + M +G +P + K+I F I+K EA M + +
Sbjct: 308 CKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNR 367
Query: 245 ---DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301
++ + T V+ +C S+A+T+ M RGI + TL S++ L +G ++
Sbjct: 368 LTWNIHVKTSNEVVRGLCANYP-SRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQK 426
Query: 302 AYKVVEEI 309
A ++V+EI
Sbjct: 427 AVQLVDEI 434
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 171/366 (46%), Gaps = 31/366 (8%)
Query: 58 LFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALM 116
LF QY + F H+ +++ ++ + KSRN D + L+ + R + + F +
Sbjct: 68 LFHQYQEMG---FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQ 124
Query: 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKP 175
+ + K ++ FH + C +++ LN ++ L + +AK + ++P
Sbjct: 125 HYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRP 184
Query: 176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235
N +++ LIKG+ D D A K+++ M + +PS+ + +I + + +A +
Sbjct: 185 NSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLL 244
Query: 236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA 295
+ M KR+ + T+ +++ +C +G+ ++A ++ +M RG + + ++ L
Sbjct: 245 EDMIKKRIRPNAV-TFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGK 303
Query: 296 RGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT 351
RGR+ EA ++ E++K PD+ +Y+ L+ L R EA +V EM +GC+P T
Sbjct: 304 RGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAAT 363
Query: 352 YIMLLQGH----------------LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYV 395
Y M++ G L R P V V GL+K G +LD A +V
Sbjct: 364 YRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFV----CMVAGLIKGG-NLDHACFV 418
Query: 396 ERVMNR 401
VM +
Sbjct: 419 LEVMGK 424
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 105/268 (39%), Gaps = 49/268 (18%)
Query: 31 SSCNFNLTHEFFLQICNNFPLSWRPVYLFFQ--YTQKAQPCFAHNSITFNRMVDIIGKSR 88
+S +FN+ + FL C+ W F + QP + +T+N ++ + ++
Sbjct: 185 NSVSFNILIKGFLDKCD-----WEAACKVFDEMLEMEVQP----SVVTYNSLIGFLCRND 235
Query: 89 NIDLFWETLQEMGRRRL-VNDKTFKIALMTL---AEVRELKKM-------------VNFF 131
++ L++M ++R+ N TF + + L E E KK+ VN+
Sbjct: 236 DMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYG 295
Query: 132 HIMNDCGCEYSLE-------------------MLNKVVKTLCQRKLVVEAKYLILKLS-E 171
+M+D G ++ + N +V LC V EA ++ ++ +
Sbjct: 296 ILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMK 355
Query: 172 WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA 231
KPN Y +I G+C + D + N M P+ M+ K D A
Sbjct: 356 GCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHA 415
Query: 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMC 259
V ++M K + G ++ ++ +C
Sbjct: 416 CFVLEVMGKKNL-SFGSGAWQNLLSDLC 442
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 137/301 (45%), Gaps = 21/301 (6%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFF 131
N +T+N ++ + +D L+ M + + ND T+ + L + R V
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLL 350
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
M + G + + + ++ L + EA L K++E KPN + Y L+ G C
Sbjct: 351 SSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCRE 410
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS- 249
G EA +I N M G P+ +++ FFK +EA++V+ K MD G S
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVW-----KEMDKTGCSR 465
Query: 250 ---TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV 306
Y ++ID +C G++ +A + +M GI+ D + SSII GL G + A K+
Sbjct: 466 NKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLY 525
Query: 307 EEI-------EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP---TMHTYIMLL 356
E+ +PD+ Y+ L+ GL + A + M+ RGC+P T +T++ L
Sbjct: 526 HEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTL 585
Query: 357 Q 357
Sbjct: 586 S 586
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 180/390 (46%), Gaps = 30/390 (7%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMG-RRRLVNDKTFKIALMTLAEVRELKKMV 128
F T + M++ S + D + L + R++ +++F + + K V
Sbjct: 73 FKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAV 132
Query: 129 NFFHIMND-CGCEYSLEMLNKVVKTLCQRKLVVEA----KYLI-LKLSEWIKPNEIAYGW 182
+ FH M D C+ S++ N V+ + L Y++ ++ I PN +++
Sbjct: 133 DLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNL 192
Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR 242
+IK C + + A +++ M + P +++ K + DEA+ + M+ +
Sbjct: 193 VIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG 252
Query: 243 MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302
+ Y ++ID +CK+G +++ +++ MF +G + +T +++I+GL +G+L +A
Sbjct: 253 CSPSPV-IYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 311
Query: 303 YKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
++E + P+ Y LI GL++ RRA +A ++ M +RG H Y +L+ G
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371
Query: 359 HLGKRGR-------------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV 405
L K G+ KG P + ++ V GL + GK +A + + R++ G
Sbjct: 372 -LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLP 430
Query: 406 PRFDYNKFLHYYSN----EEGVVMFEEVGK 431
+ Y+ + + EE V +++E+ K
Sbjct: 431 NAYTYSSLMKGFFKTGLCEEAVQVWKEMDK 460
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 165/407 (40%), Gaps = 61/407 (14%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMT-LAEVRELKKMV 128
+ N ++FN ++ + K R +D E + M R+ + D LM L + + + V
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGY 187
M GC S + N ++ LC++ + L+ + + PNE+ Y LI G
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 188 CDVGDL-----------------------------------IEASKIWNLMTDEGFEPSI 212
C G L +A ++ + M + G+ +
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQ 362
Query: 213 DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272
+ +I FK K +EAM +++ M K + Y +++D +C+ GK ++A +L
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP-NIVVYSVLVDGLCREGKPNEAKEILN 421
Query: 273 EMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDIS----LYHGLIKGLLRLR 328
M G + T SS++ G G EA +V +E++K S Y LI GL +
Sbjct: 422 RMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVG 481
Query: 329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLG-----------------KRGRKGPDPL 371
R +EA V+ +M+ G +P Y +++G G + + PD +
Sbjct: 482 RVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPD-V 540
Query: 372 VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYS 418
V ++ I + GL A + +++RG + N FL+ S
Sbjct: 541 VTYN-ILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLS 586
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 57/330 (17%)
Query: 2 PVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQ 61
P D + + ++ Q++ + RL SS+ ++L + + + +
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 62 YTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEM-GRRRLVNDKTFKIALMTLAE 120
+ + A+ N + ++ +VD + + + E L M L N T+ + +
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFK 444
Query: 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK-LSEWIKPNEIA 179
++ V + M+ GC + + ++ LC V EA + K L+ IKP+ +A
Sbjct: 445 TGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVA 504
Query: 180 YGWLIKGYCDVGDLIEASKIW--------------------------------------N 201
Y +IKG C +G + A K++ N
Sbjct: 505 YSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLN 564
Query: 202 LMTDEGFEPSIDVVDKMIETFF-KINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK 260
M D G +P + + + T K N D+ + + V+ + K
Sbjct: 565 SMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLL----------------K 608
Query: 261 RGKISQAYTMLEEMFKRGIEADNLTLSSII 290
R ++S A T++E M + + T + I+
Sbjct: 609 RQRVSGACTIVEVMLGKYLAPKTSTWAMIV 638
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 41/296 (13%)
Query: 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMN 135
+N M+D+ GK R DL W + M R + ++ +TF I + + V+ F+ M
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195
D GC + V+ L +++ EA+ L + +P+ I Y L++G+C G++ E
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISE 273
Query: 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI 255
A K++ M G EP++ TY IVI
Sbjct: 274 AEKVFKEMKLAGIEPNV------------------------------------YTYSIVI 297
Query: 256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---- 311
D +C+ G+IS+A+ + +M G + +T ++++ + GR + +V +++K
Sbjct: 298 DALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE 357
Query: 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKG 367
PD Y+ LI+ R A +V MIK+ CE T+ + + KR G
Sbjct: 358 PDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG 413
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
Query: 71 AHNSITFNRMVDI---IGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE--LK 125
A N+ITFN ++ + G++ + + ++++G T + A R+ L+
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLG----CEPDTITYNFLIEAHCRDENLE 377
Query: 126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLI 184
V + M CE + N + + + +++ V A + K+ E +PN + Y L+
Sbjct: 378 NAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILM 437
Query: 185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244
+ + K+ M D+ EP+++ ++ F + + A K+F+ M ++
Sbjct: 438 RMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCL 497
Query: 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA 281
LS Y +V+ + + G++ + ++E+M ++G+ A
Sbjct: 498 TPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVA 534
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 111/243 (45%), Gaps = 10/243 (4%)
Query: 73 NSITFNRMVDIIGK----SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128
N T++ ++D + + SR D+F + L N TF + + +K++
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAP---NAITFNNLMRVHVKAGRTEKVL 345
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGY 187
++ M GCE N +++ C+ + + A K L + + + N + + +
Sbjct: 346 QVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYI 405
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
D+ A ++++ M + EP+ + ++ F D +K+ + M K ++
Sbjct: 406 EKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEP-N 464
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR-GRLREAYKVV 306
++TYR+++ C G + AY + +EM + +L+L ++ L R G+L++ ++V
Sbjct: 465 VNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524
Query: 307 EEI 309
E++
Sbjct: 525 EKM 527
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/408 (22%), Positives = 183/408 (44%), Gaps = 49/408 (12%)
Query: 2 PVDPGHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQI---CNNFPLSWRPVYL 58
P P + + +L + +P+ L +L + + ++ Q+ C N P +
Sbjct: 32 PPSPDLVNEISRVLSDHR-NPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGF---PAHR 87
Query: 59 FFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL--VNDKTFKIALM 116
FF + ++ P FAH+ +++ +V+I+G S+ L W+ L E ++ K F I
Sbjct: 88 FFLWARRI-PDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFR 146
Query: 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKP 175
+ + F+ M + G + ++ L++++ +LC +K V A+ K + I P
Sbjct: 147 AYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVP 206
Query: 176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235
+ Y L++G+ + D A K+++ M + + + +++ K D K+F
Sbjct: 207 SAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMF 266
Query: 236 QMM---------------------------------RVKRMDDL-GLSTYRIVIDWMCKR 261
Q M R+KR D + + T+ +I +CK
Sbjct: 267 QEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKN 326
Query: 262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLY 317
K+ AY +L+EM ++G D T +SI+ + A K++ +++ PD Y
Sbjct: 327 EKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTY 386
Query: 318 HGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR 365
+ ++K L+R+ R AT+++ M +R PT+ TY +++ G + K+G+
Sbjct: 387 NMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGK 434
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 153/351 (43%), Gaps = 30/351 (8%)
Query: 31 SSCNFNLTHEFFLQI--CNNFPLSWRPVYLFFQ-YTQKAQPCFAHNSITFNRMVDIIGKS 87
SS F L +F ++ N F +S + ++ F+ Y++ P A + FNRMV+ G
Sbjct: 114 SSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRA--FNRMVEF-GIK 170
Query: 88 RNIDLFWETLQEMGRRRLVND-----------------KTFKIALMTLAEVRELKKMVNF 130
+D + L + ++ VN KT+ I + A +R+
Sbjct: 171 PCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKV 230
Query: 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCD 189
F M + C L N ++ LC+ V + ++ +KP+ ++ I YCD
Sbjct: 231 FDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCD 290
Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249
GD+ A K+ + M P++ + +I+T K K D+A + M +++ +
Sbjct: 291 AGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEM-IQKGANPDTW 349
Query: 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309
TY ++ + C ++++A +L M + D T + ++ L+ GR A ++ E +
Sbjct: 350 TYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGM 409
Query: 310 EK----PDISLYHGLIKGLLRLR-RAREATQVFREMIKRGCEPTMHTYIML 355
+ P ++ Y +I GL+R + + EA + F MI G P T ML
Sbjct: 410 SERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEML 460
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 45/226 (19%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHI 133
+ +N ++D + KS ++D ++ QEMG L D +F I + + ++
Sbjct: 244 LAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDR 303
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK--LSEWIKPNEIAYGWLIKGYCD-- 189
M ++ N ++KTLC+ + V +A YL+L + + P+ Y ++ +CD
Sbjct: 304 MKRYDLVPNVYTFNHIIKTLCKNEKVDDA-YLLLDEMIQKGANPDTWTYNSIMAYHCDHC 362
Query: 190 ---------------------------------VGDLIEASKIWNLMTDEGFEPSIDVVD 216
+G A++IW M++ F P++
Sbjct: 363 EVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYT 422
Query: 217 KMIETFF-KINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR 261
MI K K +EA + F+MM D G+ Y ++ + R
Sbjct: 423 VMIHGLVRKKGKLEEACRYFEMMI-----DEGIPPYSTTVEMLRNR 463
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 27/197 (13%)
Query: 265 SQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGL 320
S+A M + GI+ L +++ L + + A + + + P Y L
Sbjct: 155 SEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSIL 214
Query: 321 IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVG 380
++G R+R A A +VF EM++R C + Y LL
Sbjct: 215 VRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDA---------------------- 252
Query: 381 GLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLAD 440
L K+G K + + N G++ + + F+H Y + V +V +++ L
Sbjct: 253 -LCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVP 311
Query: 441 LADIFQRYGKKMATRER 457
F K + E+
Sbjct: 312 NVYTFNHIIKTLCKNEK 328
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 142/294 (48%), Gaps = 7/294 (2%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGR-RRLVNDKTFKIALMTLAEVRELKKMVNFFHI 133
I +N ++ N+D +T++EM + R +TF + A+ ++++ + F +
Sbjct: 555 ILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDM 614
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGD 192
M CGC ++ N ++ L +++ + +A ++ +++ + NE Y +++GY VGD
Sbjct: 615 MRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGD 674
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
+A + + + +EG + I + +++ K + A+ V + M + + Y
Sbjct: 675 TGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSF-VYN 733
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE-- 310
I+ID +RG + +A ++++M K G++ D T +S I G + A + +EE+E
Sbjct: 734 ILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEAL 793
Query: 311 --KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362
KP+I Y LIKG R +A + EM G +P Y LL L +
Sbjct: 794 GVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSR 847
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 28/244 (11%)
Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234
P + YG LI Y VG + +A ++ +M +EG + ++ MI F K+ A V
Sbjct: 482 PTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAV 541
Query: 235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
F+ M VK + Y +I C G + +A ++EM K T II+G
Sbjct: 542 FEDM-VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 600
Query: 295 ARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350
G +R + +V + + + P + ++GLI GL+ R+ +A ++ EM G H
Sbjct: 601 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEH 660
Query: 351 TYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDY 410
TY ++QG+ G + A +Y R+ N G++V F Y
Sbjct: 661 TYTKIMQGY-----------------------ASVGDTGKAFEYFTRLQNEGLDVDIFTY 697
Query: 411 NKFL 414
L
Sbjct: 698 EALL 701
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 161/391 (41%), Gaps = 35/391 (8%)
Query: 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTF 111
+W+ V F+ K + F MV G+ ++ ET + M R +
Sbjct: 293 NWQAVISAFEKISKP------SRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRI 346
Query: 112 KIALMTLAEV-RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170
+L+ V R++ + ++ M + G E SL + +V + A Y +
Sbjct: 347 YTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAK 406
Query: 171 EWIKP-NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229
K N YG +I +C ++ A + M +EG + I + M++ + + +
Sbjct: 407 RIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEK 466
Query: 230 EAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT 285
+ + VF KR+ + G + TY +I+ K GKIS+A + M + G++ + T
Sbjct: 467 KGLVVF-----KRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKT 521
Query: 286 LSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLIKGLLRLRRAREATQVFREMI 341
S +I G + A+ V E++ KPD+ LY+ +I + A Q +EM
Sbjct: 522 YSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQ 581
Query: 342 KRGCEPTMHTYIMLLQGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKS 388
K PT T++ ++ G+ K G R G P V+ + GLV+ +
Sbjct: 582 KLRHRPTTRTFMPIIHGY-AKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 640
Query: 389 LDAAKYVERVMNRGVEVPRFDYNKFLHYYSN 419
A + ++ + GV Y K + Y++
Sbjct: 641 EKAVEILDEMTLAGVSANEHTYTKIMQGYAS 671
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 140/315 (44%), Gaps = 24/315 (7%)
Query: 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK- 168
T+ + +V ++ K + +M + G +++L+ + ++ + K A + + +
Sbjct: 486 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANA-FAVFED 544
Query: 169 -LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227
+ E +KP+ I Y +I +C +G++ A + M P+ +I + K
Sbjct: 545 MVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGD 604
Query: 228 DDEAMKVFQMMRVKRMDDL-GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL 286
+++VF MMR R + + T+ +I+ + ++ ++ +A +L+EM G+ A+ T
Sbjct: 605 MRRSLEVFDMMR--RCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTY 662
Query: 287 SSIIYGLLARGRLREAYKVVEEIEKP----DISLYHGLIKGLLRLRRAREATQVFREMIK 342
+ I+ G + G +A++ ++ DI Y L+K + R + A V +EM
Sbjct: 663 TKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSA 722
Query: 343 RGCEPTMHTYIMLLQGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSL 389
R Y +L+ G +RG ++G P ++ T F+ KAG
Sbjct: 723 RNIPRNSFVYNILIDG-WARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMN 781
Query: 390 DAAKYVERVMNRGVE 404
A + +E + GV+
Sbjct: 782 RATQTIEEMEALGVK 796
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 11/234 (4%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIM 134
TFN +++ + + R ++ E L EM + N+ T+ + A V + K +F +
Sbjct: 626 TFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRL 685
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKP-NEIAYGWLIKGYCDVGDL 193
+ G + + ++K C+ + A + ++S P N Y LI G+ GD+
Sbjct: 686 QNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDV 745
Query: 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG----LS 249
EA+ + M EG +P I I K + A + ++ M+ LG +
Sbjct: 746 WEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQT-----IEEMEALGVKPNIK 800
Query: 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAY 303
TY +I + +A + EEM GI+ D ++ LL+R + EAY
Sbjct: 801 TYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 854
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 26/151 (17%)
Query: 307 EEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-- 364
E+I KP + + ++K R A + F M RG PT Y L+ + R
Sbjct: 302 EKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMD 361
Query: 365 ------RKGPD-----PLVNFDTIFVGGLVKAGKS------LDAAKYVERVMNRGVEVPR 407
RK + LV + ++ VGG KAG + D AK + + +N +
Sbjct: 362 EALSCVRKMKEEGIEMSLVTY-SVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASI---- 416
Query: 408 FDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
Y K ++ + + E + +++ E G+
Sbjct: 417 --YGKIIYAHCQTCNMERAEALVREMEEEGI 445
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 155/367 (42%), Gaps = 39/367 (10%)
Query: 58 LFFQYTQ-KAQPCFAHNSITFNRMVDIIGKSRNIDL---FWETLQEMGRRRLVNDKTFKI 113
LFF Q + P A F+R++ I K + D+ WE +Q +G N T I
Sbjct: 68 LFFHMVQCRPLPSIAD----FSRLLSAISKMKKYDVVIYLWEQMQMLGIPH--NLCTCNI 121
Query: 114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEW 172
L +L ++F M G E S+ ++ C+ V +A Y+ ++
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181
Query: 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
KPN + Y +I G C + A + N M +G P + + +I + +A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYG 292
++ M KR + T+ +ID K G++S+A EEM +R ++ D +T S +IYG
Sbjct: 242 RMVSCM-TKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
Query: 293 LLARGRLREAYK----VVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348
L RL EA + +V + PD+ Y LI G + ++ ++F EM +RG
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 349 MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF 408
TY +L+QG+ +AGK A + R++ GV
Sbjct: 361 TVTYTILIQGY-----------------------CRAGKLNVAEEIFRRMVFCGVHPNII 397
Query: 409 DYNKFLH 415
YN LH
Sbjct: 398 TYNVLLH 404
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 117/279 (41%), Gaps = 42/279 (15%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHIM 134
TFN ++D K + E +EM RR L D T+ + + L L + F M
Sbjct: 258 TFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM 317
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDVGDL 193
GC + + ++ C+ K V L ++S+ + N + Y LI+GYC G L
Sbjct: 318 VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKL 377
Query: 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI 253
A +I+ M G P+I TY +
Sbjct: 378 NVAEEIFRRMVFCGVHPNI------------------------------------ITYNV 401
Query: 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE--- 310
++ +C GKI +A +L +M K G++AD +T + II G+ G + +A+ + +
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQG 461
Query: 311 -KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348
PDI Y ++ GL + REA +FR+M + G P
Sbjct: 462 LMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 142/336 (42%), Gaps = 7/336 (2%)
Query: 42 FLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMG 101
F + N F R + + Q + N + +N ++D + KS+ +D + L M
Sbjct: 154 FGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRME 213
Query: 102 RRRLVNDK-TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160
+ + D T+ + L M + N ++ + V
Sbjct: 214 KDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVS 273
Query: 161 EAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219
EA+ ++ + P+ + Y LI G C L EA +++ M +G P + +I
Sbjct: 274 EAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILI 333
Query: 220 ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI 279
+ K K + MK+F M +R TY I+I C+ GK++ A + M G+
Sbjct: 334 NGYCKSKKVEHGMKLFCEMS-QRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV 392
Query: 280 EADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQ 335
+ +T + +++GL G++ +A ++ +++K DI Y+ +I+G+ + +A
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWD 452
Query: 336 VFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPL 371
++ + +G P + TY ++ G K R+ D L
Sbjct: 453 IYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADAL 488
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 105 bits (261), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 148/313 (47%), Gaps = 15/313 (4%)
Query: 58 LFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALM 116
L Q + C NS+ N +V + + LF E L R + ND KTF I +
Sbjct: 160 LLLQSFEVEGCCMVVNSL-LNTLVKLDRVEDAMKLFDEHL----RFQSCNDTKTFNILIR 214
Query: 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI--LKLSEWIK 174
L V + +K + +M+ GCE + N +++ C+ + +A + +K
Sbjct: 215 GLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS 274
Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234
P+ + Y +I GYC G + EAS + + M G P+ + +++ + K + A ++
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334
Query: 235 -FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGL 293
+M+ D+ T+ +ID C+ G++SQ + + EEM RG+ + T S +I L
Sbjct: 335 RGKMISFGCFPDV--VTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392
Query: 294 LARGRLREAYKVVEEIEKPDIS----LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM 349
RL +A +++ ++ DI +Y+ +I G + + EA + EM K+ C+P
Sbjct: 393 CNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDK 452
Query: 350 HTYIMLLQGHLGK 362
T+ +L+ GH K
Sbjct: 453 ITFTILIIGHCMK 465
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 23/299 (7%)
Query: 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDLIEASKI 199
+S N + ++LC+ L A + + S+ + PN G+L+ + + G L A+ +
Sbjct: 101 HSFWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATAL 160
Query: 200 WNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF-QMMRVKRMDDLGLSTYRIVIDWM 258
L+ E VV+ ++ T K+++ ++AMK+F + +R + +D T+ I+I +
Sbjct: 161 --LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDT--KTFNILIRGL 216
Query: 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD 313
C GK +A +L M G E D +T +++I G L +A ++ ++++ PD
Sbjct: 217 CGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276
Query: 314 ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL------------G 361
+ Y +I G + + REA+ + +M++ G PT T+ +L+ G+ G
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336
Query: 362 KRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
K G P V T + G + G+ + E + RG+ F Y+ ++ NE
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNE 395
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI-AYGWLIKGYCDVGDLIEASKIWNLM 203
++N ++ TL + V +A L + + N+ + LI+G C VG +A ++ +M
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVM 232
Query: 204 TDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK 263
+ G EP I + +I+ F K N+ ++A ++F+ ++ + + TY +I CK GK
Sbjct: 233 SGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGK 292
Query: 264 ISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHG 319
+ +A ++L++M + GI N+T + ++ G G + A ++ ++ PD+ +
Sbjct: 293 MREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTS 352
Query: 320 LIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG------------HLGKRGRKG 367
LI G R+ + + +++ EM RG P TY +L+ LG+ K
Sbjct: 353 LIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKD 412
Query: 368 PDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
P + G KAGK +A VE +
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEANVIVEEM 443
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 3/180 (1%)
Query: 69 CFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKM 127
CF + +TF ++D + + + +EM R + N T+ I + L L K
Sbjct: 343 CFP-DVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKA 401
Query: 128 VNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKG 186
+ M N V+ C+ V EA ++ ++ + KP++I + LI G
Sbjct: 402 RELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIG 461
Query: 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL 246
+C G + EA I++ M G P V ++ K EA + Q+ R + +++
Sbjct: 462 HCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHLNQIARKGQSNNV 521
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 29/377 (7%)
Query: 53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEM--GRRRLVNDKT 110
W+ FF + ++ + F H + TFNR++DI+GK ++ W + M + N T
Sbjct: 61 WQKALEFFNWVER-ESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVT 119
Query: 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL- 169
F+I +++ ++ + ++D N +V LC+ K VVEA+ L
Sbjct: 120 FRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYN-LVDALCEHKHVVEAEELCFGKN 178
Query: 170 ---SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226
+ + N + +++G+ +G + + W M EG + ++ K
Sbjct: 179 VIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSG 238
Query: 227 KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL 286
K +A+K+++ M+ +RM L + Y VI + + + EM +RG E + T
Sbjct: 239 KPWKAVKLYKEMKSRRM-KLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATH 297
Query: 287 SSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIK 342
++II L GR+R+AY++++E+ K PD Y L RL + E +F MI+
Sbjct: 298 NTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLFS---RLEKPSEILSLFGRMIR 354
Query: 343 RGCEPTMHTYIMLLQ-----GHL-------GKRGRKGPDPLVNFDTIFVGGLVKAGKSLD 390
G P M TY+ML++ G L G P + L++ G
Sbjct: 355 SGVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDM 414
Query: 391 AAKYVERVMNRGVEVPR 407
A +Y E ++ RG+ PR
Sbjct: 415 AREYEEEMIERGLS-PR 430
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 6/234 (2%)
Query: 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYC 188
F+ M C + LN V+ C+ + + L+ + + +++Y LI G+C
Sbjct: 225 FYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHC 284
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
+ G L A K+ N+M G +P++ + +I F + K EA KVF M+ +
Sbjct: 285 EKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAP-NT 343
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
TY +I+ ++G A+ E+M GI+ D LT +++I+GL + + R+A + V+E
Sbjct: 344 VTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKE 403
Query: 309 IEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
++K P+ S + LI G + A ++++ MI+ GC P T+ ML+
Sbjct: 404 LDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSA 457
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 5/184 (2%)
Query: 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239
+ L K + + A+ + M D GF P+++ + + + + D A++ ++ MR
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMR 230
Query: 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL 299
++ T +V+ C+ GK+ + +L++M + G A +++ +++I G +G L
Sbjct: 231 RCKISP-NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLL 289
Query: 300 REAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIML 355
A K+ + K P++ ++ LI G R + +EA++VF EM P TY L
Sbjct: 290 SSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTL 349
Query: 356 LQGH 359
+ G+
Sbjct: 350 INGY 353
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 111/278 (39%), Gaps = 15/278 (5%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFF 131
N T N ++ +S +D E LQ+M R D ++ + E L +
Sbjct: 237 NPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLK 296
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDV 190
++M G + ++ N ++ C+ + EA + ++ + PN + Y LI GY
Sbjct: 297 NMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL-- 248
GD A + + M G + I + +I F + K + K Q VK +D L
Sbjct: 357 GDHEMAFRFYEDMVCNGIQRDILTYNALI---FGLCKQAKTRKAAQF--VKELDKENLVP 411
Query: 249 --STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV 306
ST+ +I C R + + + + M + G + T + ++ A +V+
Sbjct: 412 NSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVL 471
Query: 307 EEIEKPDISL----YHGLIKGLLRLRRAREATQVFREM 340
E+ + I L H + GL + + ++ +EM
Sbjct: 472 REMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEM 509
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 30/212 (14%)
Query: 214 VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG-LSTYRIVIDWMCK---RGKISQAYT 269
V D + +TF + K A F M+ D G L T +M +G++ A
Sbjct: 170 VFDSLFKTFAHLKKFRNATDTFMQMK-----DYGFLPTVESCNAYMSSLLGQGRVDIALR 224
Query: 270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRR 329
EM + I + TL+ ++ G G+L + ++++++E R
Sbjct: 225 FYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDME-----------------RL 267
Query: 330 AREATQV-FREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKS 388
AT V + +I CE + + + L+ +GK G + P+ +V F+T+ + G +A K
Sbjct: 268 GFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQ-PN-VVTFNTL-IHGFCRAMKL 324
Query: 389 LDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
+A+K + V YN ++ YS +
Sbjct: 325 QEASKVFGEMKAVNVAPNTVTYNTLINGYSQQ 356
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/389 (25%), Positives = 173/389 (44%), Gaps = 38/389 (9%)
Query: 25 RLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDII 84
RL S NL+ ++ + F WR ++ + + H+S ++ VDI+
Sbjct: 73 RLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKG-HKHSSDAYDMAVDIL 131
Query: 85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLE 144
GK++ D E ++ M +LV T + A E ++ V F + + G E + E
Sbjct: 132 GKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTE 191
Query: 145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL-- 202
+N ++ TLC+ K V +A+ ++L+L I PN + I G+C + EA +W +
Sbjct: 192 SMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEA--LWTIQE 249
Query: 203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----TYRIVIDWM 258
M GF P + +I + + E +KV++M+ M+ G TY ++ +
Sbjct: 250 MKGHGFRPCVISYTTIIRCYC---QQFEFIKVYEML--SEMEANGSPPNSITYTTIMSSL 304
Query: 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDI---- 314
+ + +A + M + G + D+L + +I+ L GRL EA +V +E P++
Sbjct: 305 NAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF-RVEMPELGVSI 363
Query: 315 --SLYHGLIKGLLRLRRAREATQVFREMIKRG-CEPTMHTYIMLLQGHLGKRGRKGPDPL 371
S Y+ +I +A ++ +EM C P +HTY LL+ KRG
Sbjct: 364 NTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCF-KRG------- 415
Query: 372 VNFDTIFVGGLVKA-----GKSLDAAKYV 395
D + VG L+K SLD + Y
Sbjct: 416 ---DVVEVGKLLKEMVTKHHLSLDESTYT 441
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 174 KPNEIAYGWLIKGYCDVGDLIEASKIWNL-MTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
KP+ + Y LI G L EA +++ + M + G + + MI + +++D+A+
Sbjct: 326 KPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAI 385
Query: 233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF-KRGIEADNLTLSSIIY 291
++ + M + + + TY+ ++ KRG + + +L+EM K + D T + +I
Sbjct: 386 ELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQ 445
Query: 292 GLLARGRLREAYKVVEEIEKPDISLYH 318
L AY + EE+ DI+ H
Sbjct: 446 RLCRANMCEWAYCLFEEMISQDITPRH 472
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 3/176 (1%)
Query: 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI 166
N T+ + +L +E ++ + M GC+ N ++ TL + + EA+ +
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 352
Query: 167 -LKLSEW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFF 223
+++ E + N Y +I YC + +A ++ M P + ++ + F
Sbjct: 353 RVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCF 412
Query: 224 KINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI 279
K E K+ + M K L STY +I +C+ AY + EEM + I
Sbjct: 413 KRGDVVEVGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDI 468
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 153/332 (46%), Gaps = 49/332 (14%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDL--FWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKK 126
FA N +N + + G RN++ L+EM R L+ D ++ + E +EL+K
Sbjct: 138 FAFN--VYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195
Query: 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA-------KYLILK----------- 168
+ + M GC +SL ++ C+ + EA K++ L+
Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIR 255
Query: 169 ------------------LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210
L P I Y LI+G+C +G L EAS+I+ M + G P
Sbjct: 256 GFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP 315
Query: 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTM 270
++ +I+ + K EA+++ +M +++ ++ TY I+I+ +CK G ++ A +
Sbjct: 316 NVYTYTGLIDGLCGVGKTKEALQLLNLM-IEKDEEPNAVTYNIIINKLCKDGLVADAVEI 374
Query: 271 LEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV------EEIEKPDISLYHGLIKGL 324
+E M KR DN+T + ++ GL A+G L EA K++ PD+ Y+ LI GL
Sbjct: 375 VELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGL 434
Query: 325 LRLRRAREATQVFREMIKR-GCEPTMHTYIML 355
+ R +A ++ ++++ G + T I+L
Sbjct: 435 CKENRLHQALDIYDLLVEKLGAGDRVTTNILL 466
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 17/266 (6%)
Query: 165 LILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK 224
L L L N + L+KG C + +A + M P + + +I F +
Sbjct: 130 LALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCE 189
Query: 225 INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL 284
+ ++A+++ M+ L T+ I+ID CK GK+ +A L+EM G+EAD +
Sbjct: 190 GKELEKALELANEMKGSGCS-WSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLV 248
Query: 285 TLSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLIKGLLRLRRAREATQVFREM 340
+S+I G G L + +E+ + P Y+ LI+G +L + +EA+++F M
Sbjct: 249 VYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFM 308
Query: 341 IKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD------------TIFVGGLVKAGKS 388
I+RG P ++TY L+ G G K L+N I + L K G
Sbjct: 309 IERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLV 368
Query: 389 LDAAKYVERVMNRGVEVPRFDYNKFL 414
DA + VE + R YN L
Sbjct: 369 ADAVEIVELMKKRRTRPDNITYNILL 394
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 128/286 (44%), Gaps = 9/286 (3%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFF 131
N++T+N +++ + K + E ++ M +RR D T+ I L L +L +
Sbjct: 351 NAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLL 410
Query: 132 HIM--NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE-IAYGWLIKGYC 188
++M + + + N ++ LC+ + +A + L E + + + L+
Sbjct: 411 YLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTL 470
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
GD+ +A ++W ++D + D MI+ F K + A + MRV + +
Sbjct: 471 KAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQP-SV 529
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
Y ++ +CK G + QA+ + EEM + D ++ + +I G L G ++ A ++
Sbjct: 530 FDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVG 589
Query: 309 IEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350
+ + PD+ Y LI L+L EA F +M+ G EP H
Sbjct: 590 MSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAH 635
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 50/338 (14%)
Query: 67 QPCFAHNSITFNRMVD---IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE 123
PC +IT+N ++ +G+ + +E + E G R N T+ + L V +
Sbjct: 279 SPC----AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRP--NVYTYTGLIDGLCGVGK 332
Query: 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNEIAYGW 182
K+ + ++M + E + N ++ LC+ LV +A ++ L +P+ I Y
Sbjct: 333 TKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNI 392
Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFKINKDDEAMKVFQMM-- 238
L+ G C GDL EASK+ LM + DV+ + +I K N+ +A+ ++ ++
Sbjct: 393 LLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452
Query: 239 ------RV----------------------KRMDDLGL----STYRIVIDWMCKRGKISQ 266
RV K++ D + TY +ID CK G ++
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNV 512
Query: 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIK 322
A +L +M ++ + ++ L G L +A+++ EE+++ PD+ ++ +I
Sbjct: 513 AKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMID 572
Query: 323 GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
G L+ + A + M + G P + TY L+ L
Sbjct: 573 GSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFL 610
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 130/291 (44%), Gaps = 20/291 (6%)
Query: 36 NLTHEFFLQ-ICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKS----R 88
N+T+ L +C L + + +YL + + P + I++N ++ + K +
Sbjct: 387 NITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDP----DVISYNALIHGLCKENRLHQ 442
Query: 89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK 148
+D++ ++++G V T I L + + ++ K + + ++D + +
Sbjct: 443 ALDIYDLLVEKLGAGDRV---TTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499
Query: 149 VVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207
++ C+ ++ AK L+ K+ ++P+ Y L+ C G L +A +++ M +
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559
Query: 208 FEPSIDVVDKMIETFFKIN--KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS 265
P + + MI+ K K E++ V M R DL TY +I+ K G +
Sbjct: 560 NFPDVVSFNIMIDGSLKAGDIKSAESLLV-GMSRAGLSPDL--FTYSKLINRFLKLGYLD 616
Query: 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISL 316
+A + ++M G E D S++ +++G + ++V+++ DI L
Sbjct: 617 EAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVL 667
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 168/353 (47%), Gaps = 19/353 (5%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMV 128
F+ N + + ++D K I+ + EMG+ LV N++T+ + + L + K+
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGF 253
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGY 187
+ M + G +L N V+ LC+ +A + ++ E + N + Y LI G
Sbjct: 254 EMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGL 313
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
C L EA+K+ + M +G P++ + +I+ F + K +A+ + + ++ + +
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP-S 372
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307
L TY I++ C++G S A M++EM +RGI+ +T + +I + +A ++
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432
Query: 308 EIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH---- 359
+E+ PD+ Y LI G + EA+++F+ M+++ CEP Y ++ G+
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492
Query: 360 --------LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404
L + K P V + L K KS +A + VE++++ G++
Sbjct: 493 SSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGID 545
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 137/280 (48%), Gaps = 25/280 (8%)
Query: 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238
++G LIKG C+ G++ ++ + +T+ GF P++ + +I+ K + ++A +F
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF-- 222
Query: 239 RVKRMDDLGL----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
M LGL TY ++I+ + K G Q + M E+M + G+ + T + ++ L
Sbjct: 223 ---EMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLC 279
Query: 295 ARGRLREAYKVVEEIEKPDISL----YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350
GR ++A++V +E+ + +S Y+ LI GL R + EA +V +M G P +
Sbjct: 280 KDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLI 339
Query: 351 TYIMLLQGH--LGKRGR----------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
TY L+ G +GK G+ +G P + I V G + G + AAK V+ +
Sbjct: 340 TYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM 399
Query: 399 MNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
RG++ + Y + ++ + + ++ + E+GL
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGL 439
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/465 (19%), Positives = 201/465 (43%), Gaps = 19/465 (4%)
Query: 15 LYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNS 74
++ Q ++ S LH S + I N++ S + + F S
Sbjct: 70 IHSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGS 129
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIM 134
FN ++ + S + + +W E + +++ +F I + E E++K + +
Sbjct: 130 NCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIEL 189
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDL 193
+ G ++ + ++ C++ + +AK L ++ + + NE Y LI G G
Sbjct: 190 TEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVK 249
Query: 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI 253
+ +++ M ++G P++ + ++ K + +A +VF MR +R + TY
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR-ERGVSCNIVTYNT 308
Query: 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE--- 310
+I +C+ K+++A ++++M GI + +T +++I G G+L +A + +++
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 311 -KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRK--- 366
P + Y+ L+ G R A ++ +EM +RG +P+ TY +L+ +
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAI 428
Query: 367 ---------GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYY 417
G P V+ ++ + G G+ +A++ + ++ + E YN + Y
Sbjct: 429 QLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGY 488
Query: 418 SNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERRRNRA 462
E ++ K++ E LA + RY ++ +ER+ A
Sbjct: 489 CKEGSSYRALKLLKEMEEKELAPNVASY-RYMIEVLCKERKSKEA 532
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 133/294 (45%), Gaps = 41/294 (13%)
Query: 94 WETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153
+E +QE G N T+ + L + K F M + G ++ N ++ L
Sbjct: 256 YEKMQEDGV--FPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGL 313
Query: 154 CQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI 212
C+ + EA ++ ++ S+ I PN I Y LI G+C VG L +A + + G PS+
Sbjct: 314 CREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSL 373
Query: 213 DVVDKMIETFFKINKDDEAMKVFQMMRVK------------------------------R 242
+ ++ F + A K+ + M +
Sbjct: 374 VTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLS 433
Query: 243 MDDLGL----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298
M++LGL TY ++I C +G++++A + + M ++ E + + +++I G G
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGS 493
Query: 299 LREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348
A K+++E+E+ P+++ Y +I+ L + R+++EA ++ +MI G +P+
Sbjct: 494 SYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPS 547
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234
P+ Y LI G+C G + EAS+++ M ++ EP+ + + MI + K A+K+
Sbjct: 441 PDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKL 500
Query: 235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289
+ M K + +++YR +I+ +CK K +A ++E+M GI+ LS I
Sbjct: 501 LKEMEEKELAP-NVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 133/291 (45%), Gaps = 18/291 (6%)
Query: 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGDLIEA 196
GC+ L VV LC+R + A L+ K+ + I+P + Y +I C+ ++ +A
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275
Query: 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256
++ M ++G P++ + +I + +A ++ M ++R + + T+ +ID
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALID 334
Query: 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE-EIEK---P 312
K GK+ +A + +EM KR I+ D T SS+I G RL EA + E I K P
Sbjct: 335 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394
Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------- 364
++ Y+ LIKG + +R E ++FREM +RG TY L+ G R
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 365 ----RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
G P + +I + GL GK A E + +E + YN
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/386 (22%), Positives = 171/386 (44%), Gaps = 52/386 (13%)
Query: 66 AQPCFAHNS---------------ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT 110
A P F+H S I+ NR+ D+ ++LF + ++ +V
Sbjct: 28 APPSFSHCSFWVRDFSGVRYDYRKISINRLNDL-KLDDAVNLFGDMVKSRPFPSIVE--- 83
Query: 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170
F L +A++ + +++ M + G ++L + ++ C+R + A ++ K+
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143
Query: 171 EW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229
+ +P+ + L+ G+C + +A + M + G++P + +I F+ N+
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203
Query: 230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289
EA+ + M VK L TY IV++ +CKRG I A ++L++M + IE + ++I
Sbjct: 204 EAVALVDRMVVKGCQP-DLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTI 262
Query: 290 IYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345
I L + +A + E++ +P++ Y+ LI+ L R +A+++ +MI+R
Sbjct: 263 IDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKI 322
Query: 346 EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV 405
P + T+ + + VK GK ++A K + ++ R ++
Sbjct: 323 NPNVVTF-----------------------SALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359
Query: 406 PRFDY----NKFLHYYSNEEGVVMFE 427
F Y N F + +E MFE
Sbjct: 360 DIFTYSSLINGFCMHDRLDEAKHMFE 385
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 8/220 (3%)
Query: 147 NKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205
+ ++ C + EAK++ L +S+ PN + Y LIKG+C + E +++ M+
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424
Query: 206 EGFEPSIDVVDKMIETFFKINKDDEAMKVF-QMMRVKRMDDLGLSTYRIVIDWMCKRGKI 264
G + +I FF+ + D A VF QM+ + D+ TY I++D +C GK+
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDI--MTYSILLDGLCNNGKV 482
Query: 265 SQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGL 320
A + E + + +E D T + +I G+ G++ + + + + KP++ Y +
Sbjct: 483 ETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 542
Query: 321 IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
+ G R EA +FREM + G P TY L++ HL
Sbjct: 543 MSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHL 582
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 147/338 (43%), Gaps = 42/338 (12%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMVNFFHI 133
+T+ +V+ + K +IDL L++M + ++ + + L + + +N F
Sbjct: 222 VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDVGD 192
M++ G ++ N +++ LC +A L+ + E I PN + + LI + G
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
L+EA K+++ M +P I +I F ++ DEA +F++M K + TY
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYN 400
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYG-------------------- 292
+I CK ++ + + EM +RG+ + +T +++I+G
Sbjct: 401 TLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD 460
Query: 293 ---------------LLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREA 333
L G++ A V E +++ PDI Y+ +I+G+ + + +
Sbjct: 461 GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520
Query: 334 TQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPL 371
+F + +G +P + TY ++ G K ++ D L
Sbjct: 521 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 558
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 131/287 (45%), Gaps = 37/287 (12%)
Query: 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKIS 265
PSI K++ K+NK D + + + +M +LG+S TY I+I+ C+R ++S
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGE-----QMQNLGISHNLYTYSILINCFCRRSQLS 133
Query: 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLI 321
A +L +M K G E D +TL+S++ G R+ +A +V ++ +PD ++ LI
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193
Query: 322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------------RKGP 368
GL R RA EA + M+ +GC+P + TY +++ G L KRG +
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNG-LCKRGDIDLALSLLKKMEQGKI 252
Query: 369 DPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN-----EEGV 423
+P V + L DA + N+G+ YN + N +
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 424 VMFEEVGKKLRE--VGLADLADIFQRYGKKMATR---ERRRNRAIEP 465
++ + + +K+ V + L D F + GK + + R+I+P
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDP 359
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 129/279 (46%), Gaps = 9/279 (3%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFF 131
N +TF+ ++D K + + EM +R + D T+ + L + + F
Sbjct: 325 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 384
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
+M C ++ N ++K C+ K V E L ++S+ + N + Y LI G+
Sbjct: 385 ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQA 444
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
+ A ++ M +G P I +++ K + A+ VF+ ++ +M+ + T
Sbjct: 445 RECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP-DIYT 503
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
Y I+I+ MCK GK+ + + + +G++ + +T ++++ G +G EA + E++
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMK 563
Query: 311 K----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345
+ PD Y+ LI+ LR + ++ REM R C
Sbjct: 564 EEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSC 600
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 136/290 (46%), Gaps = 7/290 (2%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHI 133
+T+N +V+ I K +D + L +M N T I L ++
Sbjct: 275 VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLAD 334
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDVGD 192
M G S+ N ++ LC++ L+ A ++ K+ + +PN ++Y L+ G+C
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
+ A + M G P I + M+ K K ++A+++ + K + L TY
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV-LITYN 453
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE-- 310
VID + K GK +A +L+EM + ++ D +T SS++ GL G++ EA K E E
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 311 --KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
+P+ ++ ++ GL + R+ A MI RGC+P +Y +L++G
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEG 563
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 20/263 (7%)
Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234
P+ I LI+G+C +G +A+KI ++ G P + + MI + K + + A+ V
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV 194
Query: 235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
M V + TY ++ +C GK+ QA +L+ M +R D +T + +I
Sbjct: 195 LDRMSVSP----DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATC 250
Query: 295 ARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350
+ A K+++E+ PD+ Y+ L+ G+ + R EA + +M GC+P +
Sbjct: 251 RDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310
Query: 351 TYIMLLQGH------------LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
T+ ++L+ L RKG P V I + L + G A +E++
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370
Query: 399 MNRGVEVPRFDYNKFLHYYSNEE 421
G + YN LH + E+
Sbjct: 371 PQHGCQPNSLSYNPLLHGFCKEK 393
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 127/269 (47%), Gaps = 20/269 (7%)
Query: 162 AKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET 221
AK L + P+ I Y +I GYC G++ A + + M+ P + + ++ +
Sbjct: 157 AKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRS 213
Query: 222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA 281
K +AM+V M ++R + TY I+I+ C+ + A +L+EM RG
Sbjct: 214 LCDSGKLKQAMEVLDRM-LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTP 272
Query: 282 DNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVF 337
D +T + ++ G+ GRL EA K + ++ +P++ ++ +++ + R +A ++
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332
Query: 338 REMIKRGCEPTMHTYIMLL-----QGHLG-------KRGRKGPDPLVNFDTIFVGGLVKA 385
+M+++G P++ T+ +L+ +G LG K + G P + G K
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 386 GKSLDAAKYVERVMNRGVEVPRFDYNKFL 414
K A +Y+ER+++RG YN L
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTML 421
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 24/245 (9%)
Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR-VKRMDDLGL 248
G+L E K M G P I +I F ++ K +A K+ +++ + D +
Sbjct: 115 TGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD--V 172
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
TY ++I CK G+I+ A ++L+ M + D +T ++I+ L G+L++A +V++
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229
Query: 309 IEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
+ + PD+ Y LI+ R A ++ EM RGC P + TY +L+ G + K G
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNG-ICKEG 288
Query: 365 R-------------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
R G P V I + + G+ +DA K + ++ +G +N
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFN 348
Query: 412 KFLHY 416
+++
Sbjct: 349 ILINF 353
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 112/249 (44%), Gaps = 17/249 (6%)
Query: 70 FAHNSITFNRMVDIIGK----SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELK 125
F+ + +TFN +++ + + R ID+ E + + G + N ++ L + +++
Sbjct: 340 FSPSVVTFNILINFLCRKGLLGRAIDIL-EKMPQHGCQP--NSLSYNPLLHGFCKEKKMD 396
Query: 126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLI 184
+ + + M GC + N ++ LC+ V +A ++ +LS + P I Y +I
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244
G G +A K+ + M + +P ++ + K DEA+K F +
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH-----EFE 511
Query: 245 DLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
+G+ T+ ++ +CK + +A L M RG + + + + +I GL G +
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAK 571
Query: 301 EAYKVVEEI 309
EA +++ E+
Sbjct: 572 EALELLNEL 580
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHI 133
IT+N ++D + K+ + L EM + L D T+ + L+ ++ + + FFH
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEA-KYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192
G + N ++ LC+ + A +L+ ++ KPNE +Y LI+G G
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569
Query: 193 LIEASKIWNLMTDEGF 208
EA ++ N + ++G
Sbjct: 570 AKEALELLNELCNKGL 585
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 297 GRLREAYKVVEEI----EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY 352
G L E +K +E + PDI LI+G RL + R+A ++ + G P + TY
Sbjct: 116 GELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITY 175
Query: 353 IMLLQGHLGK-----------RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR 401
+++ G+ R PD +V ++TI L +GK A + ++R++ R
Sbjct: 176 NVMISGYCKAGEINNALSVLDRMSVSPD-VVTYNTILR-SLCDSGKLKQAMEVLDRMLQR 233
Query: 402 GVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437
Y + + GV ++ ++R+ G
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 171/380 (45%), Gaps = 35/380 (9%)
Query: 70 FAHNSITFNRMVDII---GKSRNIDLFWETLQEMGRR-RLVNDKTFKIALMTLAEVRE-- 123
+ N+ITF+ +++ + G+ + + EMG + L+ T L + E
Sbjct: 154 YEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAM 213
Query: 124 --LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAY 180
+ KMV + GC+ + V+ +C+ A L+ K+ E IK + + Y
Sbjct: 214 LLIDKMVEY-------GCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266
Query: 181 GWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240
+I G C G L A ++N M +G +I + +I F + D+ K+ + M +
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM-I 325
Query: 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300
KR + + T+ ++ID K GK+ +A + +EM RGI D +T +S+I G L
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 301 EAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356
+A ++V+ + P+I ++ LI G + R + ++FR+M RG TY L+
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 357 QG--HLGKR-----------GRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV 403
QG LGK RK P +V + I + GL G+S A + E++ +
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNIVTY-KILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 404 EVPRFDYNKFLHYYSNEEGV 423
E+ YN +H N V
Sbjct: 505 ELDIGIYNIIIHGMCNASKV 524
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 158/393 (40%), Gaps = 83/393 (21%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIM 134
I F+R+ I K++ DL ++M E++ + + IM
Sbjct: 89 IDFSRLFSAIAKTKQYDLVLALCKQM-------------------ELKGIAHNLYTLSIM 129
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194
+C C + LC L A I+KL +PN I + LI G C G +
Sbjct: 130 INCFCR---------CRKLC---LAFSAMGKIIKLG--YEPNTITFSTLINGLCLEGRVS 175
Query: 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM---------------------- 232
EA ++ + M + G +P + ++ ++ K+ EAM
Sbjct: 176 EALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVL 235
Query: 233 --------KVFQMMRVKRMDD----LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE 280
M +++M++ L Y I+ID +CK G + A+ + EM +GI
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGIT 295
Query: 281 ADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQV 336
+ +T + +I G GR + K++ ++ K P++ + LI ++ + REA ++
Sbjct: 296 TNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 355
Query: 337 FREMIKRGCEPTMHTYIMLLQG-----HLGKRGR-------KGPDPLVNFDTIFVGGLVK 384
+EMI RG P TY L+ G HL K + KG DP + I + G K
Sbjct: 356 HKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 415
Query: 385 AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYY 417
A + D + ++ RGV YN + +
Sbjct: 416 ANRIDDGLELFRKMSLRGVVADTVTYNTLIQGF 448
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 21/386 (5%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMVNFF 131
N++T+ +++++ KS L E L++M R + D + I + L + L N F
Sbjct: 227 NAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQR-KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV 190
+ M G ++ N ++ C + AK L + I PN + + LI +
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
G L EA ++ M G P +I+ F K N D+A ++ +M V + D + T
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM-VSKGCDPNIRT 405
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
+ I+I+ CK +I + +M RG+ AD +T +++I G G+L A ++ +E+
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 311 K----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-- 364
P+I Y L+ GL + +A ++F ++ K E + Y +++ G
Sbjct: 466 SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 525
Query: 365 ----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKF 413
KG P V I +GGL K G L A+ + R M P + YN
Sbjct: 526 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKG-PLSEAELLFRKMEEDGHAPDGWTYNIL 584
Query: 414 LHYYSNEEGVVMFEEVGKKLREVGLA 439
+ + + ++ ++L+ G +
Sbjct: 585 IRAHLGDGDATKSVKLIEELKRCGFS 610
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 128/274 (46%), Gaps = 3/274 (1%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMV 128
A ++IT+ ++D K ++D + + M + N +TF I + + + +
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGL 423
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGY 187
F M+ G N +++ C+ + AK L ++ S + PN + Y L+ G
Sbjct: 424 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Query: 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247
CD G+ +A +I+ + E I + + +I +K D+A +F + +K + G
Sbjct: 484 CDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP-G 542
Query: 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307
+ TY I+I +CK+G +S+A + +M + G D T + +I L G ++ K++E
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602
Query: 308 EIEKPDISLYHGLIKGLLRLRRAREATQVFREMI 341
E+++ S+ IK ++ + + F +M+
Sbjct: 603 ELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDML 636
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 125/282 (44%), Gaps = 27/282 (9%)
Query: 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYT 269
P++ ++ K + D + + + M +K + L T I+I+ C+ K+ A++
Sbjct: 86 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAH-NLYTLSIMINCFCRCRKLCLAFS 144
Query: 270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLIKGLL 325
+ ++ K G E + +T S++I GL GR+ EA ++V+ + KPD+ + L+ GL
Sbjct: 145 AMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLC 204
Query: 326 RLRRAREATQVFREMIKRGCEPTMHTY-----IMLLQGHLG---KRGRKGPDPLVNFD-- 375
+ EA + +M++ GC+P TY +M G + RK + + D
Sbjct: 205 LSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264
Query: 376 --TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN----EEGVVMFEEV 429
+I + GL K G +A + +G+ YN + + N ++G + ++
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 430 GKK---LREVGLADLADIFQRYGKKMATRERRR---NRAIEP 465
K+ V + L D F + GK E + +R I P
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 160/373 (42%), Gaps = 52/373 (13%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRR-LVNDKTFKIALMTLAEVRELKKMVNFF 131
N T+N ++ + NID+ +M + L N T+ + ++R++
Sbjct: 204 NVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLL 263
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
M G E +L N V+ LC+ + E +++ +++ +E+ Y LIKGYC
Sbjct: 264 RSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKE 323
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK--------- 241
G+ +A + M G PS+ +I + K + AM+ MRV+
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 242 ---------------------RMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFK 276
M+D G S TY +I+ C GK+ A +LE+M +
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 277 RGIEADNLTLSSIIYGLLARGRLREAYKV----VEEIEKPDISLYHGLIKGLLRLRRARE 332
+G+ D ++ S+++ G + EA +V VE+ KPD Y LI+G RR +E
Sbjct: 444 KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKE 503
Query: 333 ATQVFREMIKRGCEPTMHTYIML-----LQGHLGKRGR-------KGPDPLVNFDTIFVG 380
A ++ EM++ G P TY L ++G L K + KG P V ++ +
Sbjct: 504 ACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLIN 563
Query: 381 GLVKAGKSLDAAK 393
GL K ++ +A +
Sbjct: 564 GLNKQSRTREAKR 576
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 146/342 (42%), Gaps = 19/342 (5%)
Query: 91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150
L +++LQE F + + + + + + K ++ H+ G + N V+
Sbjct: 117 SLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVL 176
Query: 151 KTLCQRKLVVEAKYLILK--LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208
+ K + + K L + PN Y LI+G+C G++ A +++ M +G
Sbjct: 177 DATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGC 236
Query: 209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268
P++ + +I+ + K+ K D+ K+ + M +K ++ L +Y +VI+ +C+ G++ +
Sbjct: 237 LPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEP-NLISYNVVINGLCREGRMKEVS 295
Query: 269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGL 324
+L EM +RG D +T +++I G G +A + E+ + P + Y LI +
Sbjct: 296 FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSM 355
Query: 325 LRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH------------LGKRGRKGPDPLV 372
+ A + +M RG P TY L+ G L + G P V
Sbjct: 356 CKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415
Query: 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL 414
+ G GK DA +E + +G+ Y+ L
Sbjct: 416 VTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL 457
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 26/308 (8%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHI 133
IT+ ++ + K+ N++ E L +M R L N++T+ + ++ + +
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDVGD 192
MND G S+ N ++ C + +A ++ + E + P+ ++Y ++ G+C D
Sbjct: 406 MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD 465
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ-MMRVKRMDDLGLSTY 251
+ EA ++ M ++G +P +I+ F + + EA +++ M+RV D TY
Sbjct: 466 VDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE--FTY 523
Query: 252 RIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV----- 306
+I+ C G + +A + EM ++G+ D +T S +I GL + R REA +++
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583
Query: 307 EEIEKPDISLYH---------------GLIKGLLRLRRAREATQVFREMIKRGCEPTMHT 351
EE D++ YH LIKG EA QVF M+ + +P
Sbjct: 584 EESVPSDVT-YHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA 642
Query: 352 YIMLLQGH 359
Y +++ GH
Sbjct: 643 YNIMIHGH 650
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 129/299 (43%), Gaps = 25/299 (8%)
Query: 70 FAHNSITFNRMVD---IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKK 126
F+ + +T+N +++ + GK + E ++E G V ++ L ++ +
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV--VSYSTVLSGFCRSYDVDE 468
Query: 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK-LSEWIKPNEIAYGWLIK 185
+ M + G + + +++ C+++ EA L + L + P+E Y LI
Sbjct: 469 ALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALIN 528
Query: 186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA----MKVFQMMRV- 240
YC GDL +A ++ N M ++G P + +I K ++ EA +K+F V
Sbjct: 529 AYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVP 588
Query: 241 ---------KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY 291
+ ++ + +I C +G +++A + E M + + D + +I+
Sbjct: 589 SDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIH 648
Query: 292 GLLARGRLREAYKVVEEIEKPDISLYH----GLIKGLLRLRRAREATQVFREMIKRGCE 346
G G +R+AY + +E+ K L+ L+K L + + E V ++ R CE
Sbjct: 649 GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVL-RSCE 706
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 142/292 (48%), Gaps = 7/292 (2%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFF 131
N +T+ +V+ + K +IDL + L +M ++ N + + +L + R +N F
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 283
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IKPNEIAYGWLIKGYCDV 190
M + G ++ + ++ LC + +A L+ + E I PN + + LI +
Sbjct: 284 TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKE 343
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
G L+EA K+++ M +P I +I F ++ DEA +F++M K + T
Sbjct: 344 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVT 402
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
Y +I+ CK +I + + EM +RG+ + +T +++I+G A V +++
Sbjct: 403 YNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 311 K----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
P+I Y+ L+ GL + + +A VF + + EPT++TY ++++G
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 514
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 128/291 (43%), Gaps = 18/291 (6%)
Query: 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDLIEA 196
GC+ +L VV LC+R + A L+ K+ + I+ N + Y +I C +A
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279
Query: 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256
++ M ++G P++ +I + +A ++ M ++R + + T+ +ID
Sbjct: 280 LNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM-IERKINPNVVTFNALID 338
Query: 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE-EIEK---P 312
K GK+ +A + +EM KR I+ D T SS+I G RL EA + E I K P
Sbjct: 339 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398
Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------- 364
++ Y+ LI G + +R E ++FREM +RG TY L+ G R
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458
Query: 365 ----RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411
G P + + GL K GK A E + +E + YN
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 509
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKIS 265
PSI +K++ K+ K D + + + +M LG+S TY I+I+ C+R +IS
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGE-----KMQRLGISHNLYTYNILINCFCRRSQIS 137
Query: 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLI 321
A +L +M K G E +TLSS++ G R+ +A +V+++ +PD + LI
Sbjct: 138 LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 197
Query: 322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
GL +A EA + M++RGC+P + TY +++ G L KRG
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-LCKRG 239
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 6/210 (2%)
Query: 147 NKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205
+ ++ C + EAK++ L +S+ PN + Y LI G+C + E +++ M+
Sbjct: 369 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 428
Query: 206 EGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS 265
G + +I FF+ D A VF+ M V + TY ++D +CK GK+
Sbjct: 429 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM-VSDGVHPNIMTYNTLLDGLCKNGKLE 487
Query: 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLI 321
+A + E + + +E T + +I G+ G++ + + + + KPD+ +Y+ +I
Sbjct: 488 KAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMI 547
Query: 322 KGLLRLRRAREATQVFREMIKRGCEPTMHT 351
G R EA +FR+M + G P T
Sbjct: 548 SGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 3/232 (1%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFF 131
N +TFN ++D K + + EM +R + D T+ + L + + F
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 388
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
+M C ++ N ++ C+ K + E L ++S+ + N + Y LI G+
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQA 448
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
D A ++ M +G P+I + +++ K K ++AM VF+ ++ +M+ + T
Sbjct: 449 RDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPT-IYT 507
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302
Y I+I+ MCK GK+ + + + +G++ D + +++I G +G EA
Sbjct: 508 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEA 559
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 126/311 (40%), Gaps = 72/311 (23%)
Query: 165 LILKLSE-----WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI------- 212
L++ L E I N Y LI +C + A + M G+EPSI
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162
Query: 213 -------------DVVDKMIE--------TF-------FKINKDDEAMKVFQMMRVKRMD 244
+VD+M+E TF F NK EA+ + M V+R
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM-VQRGC 221
Query: 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304
L TY +V++ +CKRG I A+ +L +M IEA+ + S++I L +A
Sbjct: 222 QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALN 281
Query: 305 VVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360
+ E+E +P++ Y LI L R +A+++ +MI+R P + T+ L+
Sbjct: 282 LFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALID--- 338
Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDY----NKFLHY 416
VK GK ++A K + ++ R ++ F Y N F +
Sbjct: 339 --------------------AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 378
Query: 417 YSNEEGVVMFE 427
+E MFE
Sbjct: 379 DRLDEAKHMFE 389
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 199/443 (44%), Gaps = 55/443 (12%)
Query: 13 TILYQQQYSPESRLHSSLSSCN-----FNLTHEFFLQICNNFPLSWRPVYL----FFQYT 63
+++YQ L SLS CN L E FL C ++ V L F +
Sbjct: 252 SVIYQT-------LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRIN 304
Query: 64 QKAQPC-------FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM 116
+ A+ FA + IT+ +++ + K +D + + + +V T +
Sbjct: 305 EAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFV 364
Query: 117 TLAEVRE----LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SE 171
T + + L MV + I+ D C Y N ++ + LV A ++ + ++
Sbjct: 365 THGRLDDAKAVLSDMVTSYGIVPDV-CTY-----NSLIYGYWKEGLVGLALEVLHDMRNK 418
Query: 172 WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA 231
KPN +Y L+ G+C +G + EA + N M+ +G +P+ + +I F K ++ EA
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478
Query: 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY 291
+++F+ M K + T+ +I +C+ +I A +L +M G+ A+ +T +++I
Sbjct: 479 VEIFREMPRKGCKP-DVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLIN 537
Query: 292 GLLARGRLREAYKVVEEI----EKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP 347
L RG ++EA K+V E+ D Y+ LIKGL R +A +F +M++ G P
Sbjct: 538 AFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597
Query: 348 TMHTYIMLLQGHLGKRGR-------------KGPDP-LVNFDTIFVGGLVKAGKSLDAAK 393
+ + +L+ G L + G +G P +V F+++ + GL +AG+ D
Sbjct: 598 SNISCNILING-LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSL-INGLCRAGRIEDGLT 655
Query: 394 YVERVMNRGVEVPRFDYNKFLHY 416
++ G+ +N + +
Sbjct: 656 MFRKLQAEGIPPDTVTFNTLMSW 678
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 134/289 (46%), Gaps = 10/289 (3%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIM 134
TF ++ ID L++M + V N ++ + +L++ + + + M
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK-LSEWIKPNEIAYGWLIKGYCDVGDL 193
GC E N V+ LC+ + EA ++ + L P++I YG+L+ G C +G +
Sbjct: 279 FLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRV 338
Query: 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI 253
A ++ + +P I + + +I F + D+A V M + TY
Sbjct: 339 DAAKDLFYRIP----KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNS 394
Query: 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE--- 310
+I K G + A +L +M +G + + + + ++ G G++ EAY V+ E+
Sbjct: 395 LIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADG 454
Query: 311 -KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
KP+ ++ LI + R EA ++FREM ++GC+P ++T+ L+ G
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 142/316 (44%), Gaps = 27/316 (8%)
Query: 139 CEYSLEMLNKVVKTL----CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194
CE + + N V++ L C + V A LS I P +G ++K +C V ++
Sbjct: 178 CEPTFKSYNVVLEILVSGNCHK---VAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEID 234
Query: 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ-MMRVKRMDDLGLSTYRI 253
A + MT G P+ + +I + K N+ +EA+++ + M + + D T+
Sbjct: 235 SALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDA--ETFND 292
Query: 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPD 313
VI +CK +I++A M+ M RG D++T ++ GL GR+ A + I KP+
Sbjct: 293 VILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPE 352
Query: 314 ISLYHGLIKGLLRLRRAREATQVFREMIKR-GCEPTMHTYIMLLQGH------------L 360
I +++ LI G + R +A V +M+ G P + TY L+ G+ L
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
KG P V TI V G K GK +A + + G++ +N + + E
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Query: 421 ----EGVVMFEEVGKK 432
E V +F E+ +K
Sbjct: 473 HRIPEAVEIFREMPRK 488
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 111/238 (46%), Gaps = 3/238 (1%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFF 131
N++ FN ++ K I E +EM R+ D TF + L EV E+K +
Sbjct: 458 NTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLL 517
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKP-NEIAYGWLIKGYCDV 190
M G + N ++ +R + EA+ L+ ++ P +EI Y LIKG C
Sbjct: 518 RDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRA 577
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
G++ +A ++ M +G PS + +I + +EA++ FQ V R + T
Sbjct: 578 GEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE-FQKEMVLRGSTPDIVT 636
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
+ +I+ +C+ G+I TM ++ GI D +T ++++ L G + +A +++E
Sbjct: 637 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDE 694
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 131/292 (44%), Gaps = 34/292 (11%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHI 133
+TF+ ++D+ K + E EM R + D T+ + + L + F +
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGD 192
M GCE + + ++ + C+ K V + L ++S + + PN I Y L+ G+C G
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
L A +++ M G PS+ +++ + ++A+++F+ M+ RM LG+ Y
Sbjct: 436 LNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT-LGIGIYN 494
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKP 312
I+I MC K+ A+++ + +G+ KP
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGV-------------------------------KP 523
Query: 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
D+ Y+ +I GL + EA +FR+M + GC P TY +L++ HLG G
Sbjct: 524 DVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSG 575
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 164/376 (43%), Gaps = 25/376 (6%)
Query: 59 FFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL 118
F+ +++P I FNR+ + +++ DL + M + +D + + +M
Sbjct: 57 LFESMIQSRP--LPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD-MYTMTIMIN 113
Query: 119 AEVRELKKMVNFFHIMNDC---GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW-IK 174
R+ KK++ F ++ G E + +V C V EA L+ ++ E +
Sbjct: 114 CYCRK-KKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234
P+ + LI G C G + EA + + M + GF+P ++ K A+ +
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232
Query: 235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
F+ M +R + Y IVID +CK G A ++ EM +GI+AD +T SS+I GL
Sbjct: 233 FRKME-ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 295 ARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350
G+ + K++ E+ PD+ + LI ++ + EA +++ EMI RG P
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 351
Query: 351 TYIMLLQGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
TY L+ G + KG +P + +I + KA + D + +
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 399 MNRGVEVPRFDYNKFL 414
++G+ YN +
Sbjct: 412 SSKGLIPNTITYNTLV 427
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 135/286 (47%), Gaps = 29/286 (10%)
Query: 159 VVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK 217
++EAK L ++ + I P+ I Y LI G+C L EA+++++LM +G EP I
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSI 390
Query: 218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277
+I ++ K + D+ M++F+ + K + + TY ++ C+ GK++ A + +EM R
Sbjct: 391 LINSYCKAKRVDDGMRLFREISSKGLIPNTI-TYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 278 GIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKP----DISLYHGLIKGLLRLRRAREA 333
G+ +T ++ GL G L +A ++ E+++K I +Y+ +I G+ + +A
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 509
Query: 334 TQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAK 393
+F + +G +P + TY + +GGL K G +A
Sbjct: 510 WSLFCSLSDKGVKPDVVTY-----------------------NVMIGGLCKKGSLSEADM 546
Query: 394 YVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLA 439
++ G F YN + + G++ E+ ++++ G +
Sbjct: 547 LFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFS 592
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 161/393 (40%), Gaps = 56/393 (14%)
Query: 49 FPLSWRPVYLFFQYTQKAQPCFAHNSIT----------FNRMVDIIGKSRNIDLFWETLQ 98
PL+ R F Q +K ++SIT N +VDI + IDLF +Q
Sbjct: 6 IPLN-RKASNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDI-KVNDAIDLFESMIQ 63
Query: 99 EMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL 158
R L F +A ++ ++ F M G E+ + + ++ C++K
Sbjct: 64 S---RPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKK 120
Query: 159 VVEAKYLILKLSEW---IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV 215
++ A ++ + W +P+ I + L+ G+C G + EA + + M + P + V
Sbjct: 121 LLFAFSVLGR--AWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTV 178
Query: 216 DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKISQAYTML 271
+I + EA+ + + RM + G TY V++ +CK G + A +
Sbjct: 179 STLINGLCLKGRVSEAL-----VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233
Query: 272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRL 327
+M +R I+A + S +I L G +A + E+E K D+ Y LI GL
Sbjct: 234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293
Query: 328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGK 387
+ + ++ REMI R P + T+ L+ +FV K GK
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALID-------------------VFV----KEGK 330
Query: 388 SLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
L+A + ++ RG+ YN + + E
Sbjct: 331 LLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 176/390 (45%), Gaps = 24/390 (6%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKK 126
F H T+ +++ +G + E L +M R + N + + A+ ++++
Sbjct: 36 FKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM-RENVGNHMLEGVYVGAMKNYGRKGKVQE 94
Query: 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIK 185
VN F M+ CE ++ N ++ L +A + +++ + I P+ ++ +K
Sbjct: 95 AVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMK 154
Query: 186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD 245
+C A ++ N M+ +G E ++ ++ F++ N E ++F M +
Sbjct: 155 SFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVS- 213
Query: 246 LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV 305
L LST+ ++ +CK+G + + +L+++ KRG+ + T + I GL RG L A ++
Sbjct: 214 LCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRM 273
Query: 306 V----EEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG 361
V E+ KPD+ Y+ LI GL + + +EA +M+ G EP +TY L+ G+
Sbjct: 274 VGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYC- 332
Query: 362 KRGRKGPDPLVNFDTIFVG-------------GLVKAGKSLDAAKYVERVMNRGVEVPRF 408
K G + D +F G GL G++ A + +G++
Sbjct: 333 KGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVI 392
Query: 409 DYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
YN + SN+ ++ ++ ++ E GL
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGL 422
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 152/363 (41%), Gaps = 28/363 (7%)
Query: 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK-LSEWIKPNEIAYGWLIKGYC 188
F M G L NK+++ LC++ V E + L+ K + + PN Y I+G C
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248
G+L A ++ + ++G +P + + +I K +K EA +V+ V +
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA-EVYLGKMVNEGLEPDS 321
Query: 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308
TY +I CK G + A ++ + G D T S+I GL G A + E
Sbjct: 322 YTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE 381
Query: 309 IE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
KP++ LY+ LIKGL EA Q+ EM ++G P + T+ +L+ G
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGC 441
Query: 365 RKGPDPLVN-------FDTIFVGGLVKAGKSL-----DAAKYVERVMNRGVEVPRFDYNK 412
D LV F IF ++ G S +A + ++ +++ GV+ + YN
Sbjct: 442 VSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNS 501
Query: 413 FLHYYSNEEGVVMFEEVGKKLREVGLAD-------LADIFQRYGK---KMATRERRRNRA 462
L+ E K + E G A L + RY K + E +N++
Sbjct: 502 LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS 561
Query: 463 IEP 465
+ P
Sbjct: 562 VNP 564
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 140/299 (46%), Gaps = 14/299 (4%)
Query: 70 FAHNSITFNRMVDIIG----KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELK 125
F + T+ ++D + +R + LF E L + + ++ T L + E
Sbjct: 352 FVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI-LKLSEWIKPNEIAYGWLI 184
++ N M++ G ++ N +V LC+ V +A L+ + +S+ P+ + LI
Sbjct: 412 QLAN---EMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Query: 185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244
GY + A +I ++M D G +P + + ++ K +K ++ M+ ++ M V++
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTM-VEKGC 527
Query: 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304
L T+ I+++ +C+ K+ +A +LEEM + + D +T ++I G G L AY
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT 587
Query: 305 VVEEIEKP-----DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
+ ++E+ Y+ +I A ++F+EM+ R P +TY +++ G
Sbjct: 588 LFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDG 646
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 102/243 (41%), Gaps = 40/243 (16%)
Query: 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL 169
T+ L L + + + ++ + M + GC +L N ++++LC+ + + EA L+ ++
Sbjct: 498 TYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEM 557
Query: 170 -SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228
++ + P+ + +G LI G+C GDL A ++ M
Sbjct: 558 KNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKM------------------------- 592
Query: 229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS 288
+EA KV TY I+I ++ ++ A + +EM R + D T
Sbjct: 593 EEAYKVSS----------STPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRL 642
Query: 289 IIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRG 344
++ G G + YK + E+ + P ++ +I L R EA + M+++G
Sbjct: 643 MVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKG 702
Query: 345 CEP 347
P
Sbjct: 703 LVP 705
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/433 (21%), Positives = 171/433 (39%), Gaps = 85/433 (19%)
Query: 21 SPESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM 80
S L + L C+ ++E ++I + W + FF + K Q + + ++ M
Sbjct: 109 SDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQG-YVRSVREYHSM 167
Query: 81 VDIIGKSRNIDLFWETLQEMGR--RRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG 138
+ I+GK R D W + EM + LVN +T I + V ++ K +N FH
Sbjct: 168 ISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFK 227
Query: 139 CEYSLEMLNKVVKTLCQRKLVVEAKYLI---------------LKLSEW----------- 172
E ++ ++ LC+ K V +A +LI + L+ W
Sbjct: 228 LEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAE 287
Query: 173 ----------IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF 222
+K + ++Y +I Y G L + K+++ M E EP V + ++
Sbjct: 288 RVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHAL 347
Query: 223 FKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD 282
K + EA + + M ++ + + TY +I +CK K +A + +EM ++G+
Sbjct: 348 AKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGL--- 404
Query: 283 NLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK 342
P I YH ++ LR E ++ +M K
Sbjct: 405 ----------------------------FPTIRTYHAFMR---ILRTGEEVFELLAKMRK 433
Query: 343 RGCEPTMHTYIMLLQGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLD 390
GCEPT+ TYIML++ R K P ++ + + GL GK +
Sbjct: 434 MGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEE 493
Query: 391 AAKYVERVMNRGV 403
A Y + + ++G+
Sbjct: 494 AYGYYKEMKDKGM 506
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 100/419 (23%), Positives = 179/419 (42%), Gaps = 72/419 (17%)
Query: 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTF 111
S P+ L F + F H +TF M+ + +D LQ+M + +
Sbjct: 54 SCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDL 113
Query: 112 KIALMTL-AEVRELKKMVNFFHIMNDCGCEYSLEMLNKV--------------------- 149
I+++++ +V ++ V F+ + + GC+ S+++ N V
Sbjct: 114 FISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMK 173
Query: 150 --------------VKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLI 194
+K LC+ V AK L++++S + P+ ++Y +I C+VG +
Sbjct: 174 RDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----T 250
E ++ E FEP + V + +I + K+ + F++MR M + G+S +
Sbjct: 234 EGREL-----AERFEPVVSVYNALIN---GLCKEHDYKGAFELMR--EMVEKGISPNVIS 283
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
Y +I+ +C G+I A++ L +M KRG + TLSS++ G RG +A + ++
Sbjct: 284 YSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMI 343
Query: 311 K-----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR 365
+ P++ Y+ L++G +A VF M + GC P + TY L+ G KRG
Sbjct: 344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLING-FAKRGS 402
Query: 366 -------------KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVM--NRGVEVPRFD 409
G P V T V L + K +A +E + N VP F+
Sbjct: 403 LDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFN 461
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 156/343 (45%), Gaps = 21/343 (6%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIM 134
+N +++ + K + +E ++EM + + N ++ + L +++ +F M
Sbjct: 248 VYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQM 307
Query: 135 NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW--IKPNEIAYGWLIKGYCDVGD 192
GC ++ L+ +VK R +A L ++ ++PN +AY L++G+C G+
Sbjct: 308 LKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGN 367
Query: 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252
+++A +++ M + G P+I +I F K D A+ ++ M + Y
Sbjct: 368 IVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCP-NVVVYT 426
Query: 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK- 311
+++ +C+ K +A +++E M K T ++ I GL GRL A KV ++E+
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQ 486
Query: 312 ----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH-------- 359
P+I Y+ L+ GL + R EA + RE+ RG E + TY LL G
Sbjct: 487 HRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGI 546
Query: 360 ----LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398
+GK G P + + K GK+ AA+ ++ V
Sbjct: 547 ALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLV 589
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 164/387 (42%), Gaps = 36/387 (9%)
Query: 58 LFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALM 116
++ Y + F N T+N ++ + K+ +D + L EM + D ++ +
Sbjct: 165 IYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVIS 224
Query: 117 TLAEV---RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-W 172
++ EV +E +++ F E + + N ++ LC+ A L+ ++ E
Sbjct: 225 SMCEVGLVKEGRELAERF--------EPVVSVYNALINGLCKEHDYKGAFELMREMVEKG 276
Query: 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
I PN I+Y LI C+ G + A M G P+I + +++ F +A+
Sbjct: 277 ISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDAL 336
Query: 233 KVF-QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY 291
++ QM+R + + Y ++ C G I +A ++ M + G + T S+I
Sbjct: 337 DLWNQMIRGFGLQP-NVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLIN 395
Query: 292 GLLARGRLREAY----KVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP 347
G RG L A K++ P++ +Y +++ L R + +EA + M K C P
Sbjct: 396 GFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAP 455
Query: 348 TMHTYIMLLQGHLGKRGR---------------KGPDPLVNFDTIFVGGLVKAGKSLDAA 392
++ T+ ++G L GR + P +V ++ + + GL KA + +A
Sbjct: 456 SVPTFNAFIKG-LCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNEL-LDGLAKANRIEEAY 513
Query: 393 KYVERVMNRGVEVPRFDYNKFLHYYSN 419
+ RGVE YN LH N
Sbjct: 514 GLTREIFMRGVEWSSSTYNTLLHGSCN 540
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 125/270 (46%), Gaps = 15/270 (5%)
Query: 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR 242
+I Y VG A +++ + + G +PS+ + + +++T N+ V++ M+
Sbjct: 117 VISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDG 176
Query: 243 MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302
+ + TY +++ +CK K+ A +L EM +G D ++ +++I + G ++E
Sbjct: 177 FEP-NVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEG 235
Query: 303 YKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQ----- 357
++ E E P +S+Y+ LI GL + + A ++ REM+++G P + +Y L+
Sbjct: 236 RELAERFE-PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNS 294
Query: 358 -------GHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAK-YVERVMNRGVEVPRFD 409
L + ++G P + + V G G + DA + + + G++
Sbjct: 295 GQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVA 354
Query: 410 YNKFLHYYSNEEGVVMFEEVGKKLREVGLA 439
YN + + + +V V + E+G +
Sbjct: 355 YNTLVQGFCSHGNIVKAVSVFSHMEEIGCS 384
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 111/274 (40%), Gaps = 42/274 (15%)
Query: 126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK-LSEWIKPNEIAYGWLI 184
K V+ F M + GC ++ ++ +R + A Y+ K L+ PN + Y ++
Sbjct: 370 KAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMV 429
Query: 185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244
+ C EA + +M+ E PS+ + I+ + D A KVF+ M +
Sbjct: 430 EALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRC 489
Query: 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE------------------------ 280
+ TY ++D + K +I +AY + E+F RG+E
Sbjct: 490 PPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQ 549
Query: 281 -----------ADNLTLSSIIYGLLARGRLREAYKVVEEIE------KPDISLYHGLIKG 323
D +T++ II +G+ A ++++ + +PD+ Y +I G
Sbjct: 550 LVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWG 609
Query: 324 LLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQ 357
L R + + MI G P++ T+ +L+
Sbjct: 610 LCRSNCREDGVILLERMISAGIVPSIATWSVLIN 643
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 29/264 (10%)
Query: 169 LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228
L + +KPN I+Y LI G C+ G + EA + + M G +P++ + +I F K +
Sbjct: 323 LDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDML 382
Query: 229 DEAMKVFQMMR------VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD 282
EA+ +F ++ RM Y ++ID CK GKI + + EEM + GI D
Sbjct: 383 KEALDMFGSVKGQGAVPTTRM-------YNMLIDAYCKLGKIDDGFALKEEMEREGIVPD 435
Query: 283 NLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFRE 339
T + +I GL G + A K+ +++ PD+ +H L++G R +R+A + +E
Sbjct: 436 VGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKE 495
Query: 340 MIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPL-------------VNFDTIFVGGLVKAG 386
M K G +P TY ++++G+ + K + V + + G + G
Sbjct: 496 MSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKG 555
Query: 387 KSLDAAKYVERVMNRGVEVPRFDY 410
K DA + ++ +G+ R Y
Sbjct: 556 KLEDANMLLNEMLEKGLVPNRITY 579
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 18/249 (7%)
Query: 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232
I+PN + +I C G + +A + M G P++ + +I+ + K+ + +
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY 278
Query: 233 KVFQMMRVKRMDDLG--LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII 290
K +++ +D+ L+T+ I+ID K + + + +EM + ++ + ++ +S+I
Sbjct: 279 KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLI 338
Query: 291 YGLLARGRLREAY----KVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCE 346
GL G++ EA K+V +P++ Y+ LI G + +EA +F + +G
Sbjct: 339 NGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAV 398
Query: 347 PTMHTYIMLLQGH--LGK----------RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY 394
PT Y ML+ + LGK R+G P V + GL + G A K
Sbjct: 399 PTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKL 458
Query: 395 VERVMNRGV 403
+++ ++G+
Sbjct: 459 FDQLTSKGL 467
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 112/234 (47%), Gaps = 35/234 (14%)
Query: 207 GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266
G++ S ++ K N+ + V++ M ++R + T+ +VI+ +CK GK+++
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEM-IRRKIQPNVFTFNVVINALCKTGKMNK 241
Query: 267 AYTMLEEMFKRGIEADNLTLSSIIYG---LLARGRLREAYKVVEEIEK----PDISLYHG 319
A ++E+M G + ++ +++I G L G++ +A V++E+ + P+++ ++
Sbjct: 242 ARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNI 301
Query: 320 LIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFV 379
LI G + + +VF+EM+ + +P + +Y + L+N
Sbjct: 302 LIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISY----------------NSLIN------ 339
Query: 380 GGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN----EEGVVMFEEV 429
GL GK +A +++++ GV+ YN ++ + +E + MF V
Sbjct: 340 -GLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV 392
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 70/139 (50%)
Query: 147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206
N ++ LC+ + AK L +L+ P+ + + L++GYC G+ +A+ + M+
Sbjct: 440 NCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKM 499
Query: 207 GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266
G +P + +++ + K A + M +R + +++Y +++ ++GK+
Sbjct: 500 GLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559
Query: 267 AYTMLEEMFKRGIEADNLT 285
A +L EM ++G+ + +T
Sbjct: 560 ANMLLNEMLEKGLVPNRIT 578
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMN 135
T+N ++ + ++ NI+ + ++ + L + TF I + E +K M+
Sbjct: 438 TYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMS 497
Query: 136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW--IKPNEIAYGWLIKGYCDVGDL 193
G + N V+K C+ + A + ++ + ++ N +Y L++GY G L
Sbjct: 498 KMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKL 557
Query: 194 IEASKIWNLMTDEGFEPS 211
+A+ + N M ++G P+
Sbjct: 558 EDANMLLNEMLEKGLVPN 575
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/432 (22%), Positives = 180/432 (41%), Gaps = 68/432 (15%)
Query: 60 FQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETL-QEMGRRRLVNDKTFKIALMTL 118
F Y + QP F H+ + ++ +G+ R +L + L + + + F +
Sbjct: 71 FDYASQ-QPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPLTGEIFTYLIKVY 129
Query: 119 AEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPN 176
AE + +K+++ F+ M + + LN+++ L + ++ + + K S + PN
Sbjct: 130 AEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPN 189
Query: 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236
+Y L++ +C DL A +++ M + P +D
Sbjct: 190 TRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVD----------------------- 226
Query: 237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR 296
+Y+I+I C++G+++ A +L++M +G D L+ ++++ L +
Sbjct: 227 -------------SYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRK 273
Query: 297 GRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY 352
+LREAYK++ ++ PD+ Y+ +I G R RA +A +V +M+ GC P +Y
Sbjct: 274 TQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSY 333
Query: 353 IMLLQG------------HLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400
L+ G +L + KG P + V G GK +A VE VM
Sbjct: 334 RTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMK 393
Query: 401 RGVEVPRFDYNKFLHYYSNE---EGVVMFEEVGKKLREVGLADLADIFQRYG-------- 449
G + + + NE E + +F E K G + D+ G
Sbjct: 394 NGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEITGDTRIVDVGIGLGSYLSSKLQ 453
Query: 450 -KKMATRERRRN 460
K+ RERRR+
Sbjct: 454 MKRKNARERRRH 465
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 143/312 (45%), Gaps = 29/312 (9%)
Query: 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170
F L +A++++ +++ M G ++L N ++ C+R + A L+ K+
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 171 EW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229
+ +P+ + L+ GYC + +A + + M + G+ P +I F NK
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289
EA+ + M V+R L TY +V++ +CKRG I A+ +L +M IEAD + ++I
Sbjct: 133 EAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191
Query: 290 IYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345
I L + +A + +E+E +P++ Y LI L R +A+Q+ +MI++
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251
Query: 346 EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV 405
P + T+ L + VK GK ++A K + ++ R ++
Sbjct: 252 NPNLVTFNAL-----------------------IDAFVKEGKFVEAEKLHDDMIKRSIDP 288
Query: 406 PRFDYNKFLHYY 417
F YN ++ +
Sbjct: 289 DIFTYNSLINGF 300
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 7/292 (2%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMVNFF 131
N +T+ +V+ + K +IDL + L +M ++ D F + +L + R + +N F
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
M G ++ + ++ LC +A L+ + E I PN + + LI +
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
G +EA K+ + M +P I + +I F ++ D+A ++F+ M K L T
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP-DLDT 327
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
Y +I CK ++ + EM RG+ D +T +++I GL G A KV +++
Sbjct: 328 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 387
Query: 311 K----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358
PDI Y L+ GL + +A +VF M K + ++ Y +++G
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 154/347 (44%), Gaps = 22/347 (6%)
Query: 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL 169
T+ + + L + ++ N + M E + + N ++ +LC+ + V +A L ++
Sbjct: 152 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 211
Query: 170 -SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228
++ I+PN + Y LI C G +AS++ + M ++ P++ + +I+ F K K
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 271
Query: 229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS 288
EA K+ M +KR D + TY +I+ C ++ +A M E M + D T ++
Sbjct: 272 VEAEKLHDDM-IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNT 330
Query: 289 IIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRG 344
+I G R+ + ++ E+ D Y LI+GL A +VF++M+ G
Sbjct: 331 LIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Query: 345 CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD--------------TIFVGGLVKAGKSLD 390
P + TY +LL G L G K L FD T + G+ KAGK D
Sbjct: 391 VPPDIMTYSILLDG-LCNNG-KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Query: 391 AAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437
+ +GV+ YN + ++ + + KK++E G
Sbjct: 449 GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 495
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/411 (22%), Positives = 162/411 (39%), Gaps = 90/411 (21%)
Query: 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIMN 135
FN+++ I K + DL ++M R + N T+ I + ++ + M
Sbjct: 13 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72
Query: 136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW----------------------- 172
G E S+ L+ ++ C K + +A L+ ++ E
Sbjct: 73 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132
Query: 173 -------------IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219
+PN + YG ++ G C GD+ A + N M E + + + +I
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192
Query: 220 ETFFKINKDDEAMKVFQMMRVKR---------------------------MDDL------ 246
++ K D+A+ +F+ M K + D+
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
Query: 247 -GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV 305
L T+ +ID K GK +A + ++M KR I+ D T +S+I G RL +A ++
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 306 VEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG--H 359
E + PD+ Y+ LIKG + +R + T++FREM RG TY L+QG H
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 360 LG----------KRGRKGPDPLVNFDTIFVGGLVKAG---KSLDAAKYVER 397
G + G P + +I + GL G K+L+ Y+++
Sbjct: 373 DGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 131/279 (46%), Gaps = 9/279 (3%)
Query: 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFF 131
N +TFN ++D K + +M +R + D T+ + L K F
Sbjct: 254 NLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMF 313
Query: 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCDV 190
M C L+ N ++K C+ K V + L ++S + + + Y LI+G
Sbjct: 314 EFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHD 373
Query: 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
GD A K++ M +G P I +++ K ++A++VF M+ + L +
Sbjct: 374 GDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK-LDIYI 432
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310
Y +I+ MCK GK+ + + + +G++ + +T +++I GL ++ L+EAY ++++++
Sbjct: 433 YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492
Query: 311 K----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345
+ PD Y+ LI+ LR + ++ REM R C
Sbjct: 493 EDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM--RSC 529
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKIS 265
PSI +K++ K+ K D + + + +M LG+S TY I+I+ C+R +IS
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGE-----KMQRLGISHNLYTYNILINCFCRRSQIS 62
Query: 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI----EKPDISLYHGLI 321
A +L +M K G E +TLSS++ G R+ +A +V+++ +PD + LI
Sbjct: 63 LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 122
Query: 322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364
GL +A EA + M++RGC+P + TY +++ G L KRG
Sbjct: 123 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-LCKRG 164
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 157/334 (47%), Gaps = 50/334 (14%)
Query: 75 ITFNRMVDIIGKSRNID---LFWETLQEMGRRRLVNDKT-FKIALMTLAEVRELKKMVNF 130
+ F+ M+ + +S N+D +++ +++E G L+ D + I + + +N
Sbjct: 376 VCFSSMMSLFTRSGNLDKALMYFNSVKEAG---LIPDNVIYTILIQGYCRKGMISVAMNL 432
Query: 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-WIKPNEIAYGWLIKGYCD 189
+ M GC + N ++ LC+RK++ EA L +++E + P+ LI G+C
Sbjct: 433 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCK 492
Query: 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249
+G+L A +++ M ++ + + +++ F K+ D A +++ M K + +S
Sbjct: 493 LGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPIS 552
Query: 250 TYRIVIDWMCKRGKISQAY-----------------------------------TMLEEM 274
Y I+++ +C +G +++A+ + LE+M
Sbjct: 553 -YSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Query: 275 FKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK------PDISLYHGLIKGLLRLR 328
G D ++ +++IYG + + +A+ +V+++E+ PD+ Y+ ++ G R
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQN 671
Query: 329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362
+ +EA V R+MI+RG P TY ++ G + +
Sbjct: 672 QMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 95/442 (21%), Positives = 179/442 (40%), Gaps = 64/442 (14%)
Query: 62 YTQKAQPCFAHNSITFNRMVDII---GKSRNIDLFWETLQEMG-RRRLVNDKTFKIALMT 117
Y + ++ N T N MV+ + GK + F +QE G +V T A +
Sbjct: 223 YQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK-LSEWIKPN 176
+ E +++N M G + N V+ LC+ AK + + L + P+
Sbjct: 283 KGLMEEAFELMN---AMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 339
Query: 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236
Y L+ C GD++E K+++ M P + M+ F + D+A+ F
Sbjct: 340 STTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399
Query: 237 MMRVKRM--DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294
++ + D++ Y I+I C++G IS A + EM ++G D +T ++I++GL
Sbjct: 400 SVKEAGLIPDNV---IYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLC 456
Query: 295 ARGRLREAYKVVEEIE---------------------------------------KPDIS 315
R L EA K+ E+ + D+
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 316 LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL-----QGHLGKRGR----- 365
Y+ L+ G ++ A +++ +M+ + PT +Y +L+ +GHL + R
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576
Query: 366 --KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV 423
K P V + G ++G + D ++E++++ G YN ++ + EE +
Sbjct: 577 ISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENM 636
Query: 424 VMFEEVGKKLREVGLADLADIF 445
+ KK+ E + D+F
Sbjct: 637 SKAFGLVKKMEEEQGGLVPDVF 658
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 155/351 (44%), Gaps = 30/351 (8%)
Query: 95 ETLQEMGRRRLVNDKTFKIALMTL-AEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153
+ +M R +V D ++M+L L K + +F+ + + G + +++
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY 420
Query: 154 CQRKLVVEAKYLILK-LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI 212
C++ ++ A L + L + + + Y ++ G C L EA K++N MT+ P
Sbjct: 421 CRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 480
Query: 213 DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272
+ +I+ K+ AM++FQ M+ KR+ L + TY ++D K G I A +
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKEKRIR-LDVVTYNTLLDGFGKVGDIDTAKEIWA 539
Query: 273 EMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE----KPDISLYHGLIKGLLRLR 328
+M + I ++ S ++ L ++G L EA++V +E+ KP + + + +IKG R
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599
Query: 329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKS 388
A + +MI G P +Y L+ G + + N F GLVK +
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREE---------NMSKAF--GLVKKMEE 648
Query: 389 LDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438
+G VP F YN LH + + + E V +K+ E G+
Sbjct: 649 -----------EQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGV 688
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/350 (21%), Positives = 145/350 (41%), Gaps = 31/350 (8%)
Query: 68 PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV------------------NDK 109
P F H S++ + M+ I+ +S + L M RR V ND
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166
Query: 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL 169
F + + T + R+L++ F ++ G S++ N ++ +L + V A + ++
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 170 S-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228
S + N ++ C G + + + + ++G P I + +I +
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLM 286
Query: 229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS 288
+EA ++ M K G+ TY VI+ +CK GK +A + EM + G+ D+ T S
Sbjct: 287 EEAFELMNAMPGKGFSP-GVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Query: 289 IIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRG 344
++ +G + E KV ++ PD+ + ++ R +A F + + G
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
Query: 345 CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY 394
P Y +L+QG+ RKG +++ +++ G ++D Y
Sbjct: 406 LIPDNVIYTILIQGYC----RKG---MISVAMNLRNEMLQQGCAMDVVTY 448
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 120/264 (45%), Gaps = 24/264 (9%)
Query: 58 LFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALM 116
LF + T++A +S T ++D K N+ E Q+M +R+ D T+ L
Sbjct: 467 LFNEMTERA---LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523
Query: 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEML------NKVVKTLCQRKLVVEA-KYLILKL 169
+V ++ + M S E+L + +V LC + + EA + +
Sbjct: 524 GFGKVGDIDTAKEIWADM------VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMI 577
Query: 170 SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229
S+ IKP + +IKGYC G+ + M EGF P + +I F + ++
Sbjct: 578 SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVR---EE 634
Query: 230 EAMKVFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT 285
K F +++ + GL TY ++ C++ ++ +A +L +M +RG+ D T
Sbjct: 635 NMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRST 694
Query: 286 LSSIIYGLLARGRLREAYKVVEEI 309
+ +I G +++ L EA+++ +E+
Sbjct: 695 YTCMINGFVSQDNLTEAFRIHDEM 718
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 101/213 (47%), Gaps = 5/213 (2%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHI 133
+T+N ++D GK +ID E +M + ++ ++ I + L L + +
Sbjct: 516 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWIKPNEIAYGWLIKGYCDVGD 192
M + ++ + N ++K C+ + + + K+ SE P+ I+Y LI G+ +
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREEN 635
Query: 193 LIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250
+ +A + M +E G P + + ++ F + N+ EA V + M ++R + ST
Sbjct: 636 MSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM-IERGVNPDRST 694
Query: 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN 283
Y +I+ + +++A+ + +EM +RG D+
Sbjct: 695 YTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 33/171 (19%)
Query: 283 NLTLSSIIYGLLARGRLREA---------------YKVVEEIEK------PDISLYHGLI 321
+L+LS++I+ L+ GRL +A ++V ++ + S++ LI
Sbjct: 113 SLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDSVFDLLI 172
Query: 322 KGLLRLRRAREATQVFREMIKRG-------CEPTMHT-----YIMLLQGHLGKRGRKGPD 369
+ ++ R+ REA + F + +G C + + ++ L G + R G
Sbjct: 173 RTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVG 232
Query: 370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420
V I V L K GK ++ +V +GV YN + YS++
Sbjct: 233 INVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/389 (26%), Positives = 170/389 (43%), Gaps = 41/389 (10%)
Query: 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHI 133
+T+N M+ K+ E L++M R DK T+ + + V +
Sbjct: 258 VTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQE 317
Query: 134 MNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK--LSEWIKPNEIAYGWLIKGYCDVG 191
M++ G + + V+ LC+ + E Y + + + + KPN Y LI GY G
Sbjct: 318 MDEKGIQVPPHAFSLVIGGLCKEGKLNEG-YTVFENMIRKGSKPNVAIYTVLIDGYAKSG 376
Query: 192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST- 250
+ +A ++ + M DEGF+P + ++ K + +EA+ F R D L +++
Sbjct: 377 SVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC---RFDGLAINSM 433
Query: 251 -YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA---YKVV 306
Y +ID + K G++ +A + EEM ++G D+ +++I ++ EA +K +
Sbjct: 434 FYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRM 493
Query: 307 EEIEKPDISLYHG--LIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL--GK 362
EE E D ++Y L+ G+ + R EA +++ MI +G PT + L G GK
Sbjct: 494 EEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGK 553
Query: 363 RGR--KGPDPLVNFDTIF-------VGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKF 413
R K D L I + L KAG+ +A K + + RG EVP
Sbjct: 554 VARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVP------- 606
Query: 414 LHYYSNEEGVVMFEEVGKKLREVGLADLA 442
VM LR+VG ADLA
Sbjct: 607 -----GRIRTVMI----NALRKVGKADLA 626
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 147/320 (45%), Gaps = 17/320 (5%)
Query: 56 VYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIAL 115
+ FF +++K Q + HN + +VD++ ++++D E+ + + AL
Sbjct: 135 AWSFFCWSRK-QKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANAL 193
Query: 116 M-TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL-SEWI 173
+ + ++ +++++ + M + G E +L N ++ L V A+ + + S I
Sbjct: 194 IKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRI 253
Query: 174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMK 233
KP+ + Y +IKGYC G +A + M G E MI+ + + +
Sbjct: 254 KPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVA 313
Query: 234 VFQMMRVKRMDDLGLS----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289
++Q MD+ G+ + +VI +CK GK+++ YT+ E M ++G + + + +
Sbjct: 314 LYQ-----EMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVL 368
Query: 290 IYGLLARGRLREA----YKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345
I G G + +A +++++E KPD+ Y ++ GL + R EA F G
Sbjct: 369 IDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGL 428
Query: 346 EPTMHTYIMLLQGHLGKRGR 365
Y L+ G LGK GR
Sbjct: 429 AINSMFYSSLIDG-LGKAGR 447
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 51/208 (24%)
Query: 246 LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV 305
+ +S +I K G + + + +M + GIE T + ++ GL++ + A +V
Sbjct: 185 MTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERV 244
Query: 306 VEEIE----KPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQ---- 357
E +E KPDI Y+ +IKG + + ++A + R+M RG E TY+ ++Q
Sbjct: 245 FEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYA 304
Query: 358 ------------------------------GHLGKRG-------------RKGPDPLVNF 374
G L K G RKG P V
Sbjct: 305 DSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAI 364
Query: 375 DTIFVGGLVKAGKSLDAAKYVERVMNRG 402
T+ + G K+G DA + + R+++ G
Sbjct: 365 YTVLIDGYAKSGSVEDAIRLLHRMIDEG 392
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 100/240 (41%), Gaps = 5/240 (2%)
Query: 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMT-LAEVRELKKMV 128
F + +T++ +V+ + K+ ++ + L + F +L+ L + + +
Sbjct: 393 FKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAE 452
Query: 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW--LIKG 186
F M++ GC N ++ + + V EA L ++ E ++ Y + L+ G
Sbjct: 453 RLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSG 512
Query: 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL 246
EA K+W++M D+G P+ + K A K+ + M +
Sbjct: 513 MFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILD--ELAPMGVI 570
Query: 247 GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV 306
+ +I+ +CK G+I +A + + + +RG E + +I L G+ A K++
Sbjct: 571 LDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLM 630
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,692,555
Number of Sequences: 539616
Number of extensions: 6892512
Number of successful extensions: 28426
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 23138
Number of HSP's gapped (non-prelim): 2009
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)