Query 048269
Match_columns 465
No_of_seqs 557 out of 2847
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 07:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.1E-60 1.3E-64 473.9 53.2 410 37-451 368-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9.6E-60 2.1E-64 472.4 54.3 417 26-449 392-854 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.4E-57 3E-62 454.1 43.1 413 26-451 109-544 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 6.5E-57 1.4E-61 459.7 46.9 422 26-458 174-641 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-55 3E-60 449.9 44.9 424 26-464 209-723 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.2E-54 6.9E-59 430.0 45.4 399 25-439 144-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-25 6.8E-30 231.4 50.7 398 49-459 477-888 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2E-24 4.3E-29 225.4 53.5 374 51-436 445-832 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.6E-22 3.5E-27 189.8 34.6 301 81-408 42-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 8.3E-22 1.8E-26 185.0 34.7 315 28-350 26-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.1E-18 2.5E-23 171.9 41.6 330 76-436 44-381 (656)
12 KOG4626 O-linked N-acetylgluco 99.9 8.7E-20 1.9E-24 164.8 29.9 353 73-437 115-486 (966)
13 PRK15174 Vi polysaccharide exp 99.9 7.3E-18 1.6E-22 166.2 44.7 319 51-401 56-381 (656)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-17 2.7E-22 165.0 45.4 358 51-437 141-572 (615)
15 PRK11447 cellulose synthase su 99.9 8.4E-17 1.8E-21 169.5 51.7 375 50-435 282-739 (1157)
16 PRK11447 cellulose synthase su 99.9 2.8E-16 6.1E-21 165.5 52.4 349 83-436 278-700 (1157)
17 KOG4422 Uncharacterized conser 99.8 2.3E-16 5E-21 136.9 39.5 338 106-447 205-601 (625)
18 KOG4626 O-linked N-acetylgluco 99.8 6.5E-18 1.4E-22 152.8 30.2 372 52-437 63-452 (966)
19 PRK10049 pgaA outer membrane p 99.8 3.9E-16 8.6E-21 157.2 43.9 414 2-454 12-472 (765)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-15 3E-20 150.6 45.4 350 76-457 129-557 (615)
21 PRK10049 pgaA outer membrane p 99.8 5.3E-15 1.1E-19 149.1 41.7 365 49-437 27-423 (765)
22 PRK09782 bacteriophage N4 rece 99.8 1.5E-13 3.3E-18 139.1 48.6 85 81-170 189-274 (987)
23 PRK14574 hmsH outer membrane p 99.8 8.4E-14 1.8E-18 138.2 45.2 391 38-436 35-513 (822)
24 KOG4422 Uncharacterized conser 99.8 3.6E-14 7.9E-19 123.5 35.2 379 74-460 116-576 (625)
25 PRK09782 bacteriophage N4 rece 99.7 1.5E-12 3.2E-17 132.1 42.4 346 55-437 360-741 (987)
26 PRK14574 hmsH outer membrane p 99.7 3.6E-12 7.8E-17 126.7 44.2 378 26-414 57-524 (822)
27 PRK10747 putative protoheme IX 99.7 7.7E-13 1.7E-17 123.3 35.7 281 87-400 97-389 (398)
28 KOG2076 RNA polymerase III tra 99.7 4.7E-12 1E-16 120.4 38.5 328 81-434 146-510 (895)
29 COG2956 Predicted N-acetylgluc 99.7 9.6E-13 2.1E-17 110.7 29.8 288 87-401 48-347 (389)
30 KOG2002 TPR-containing nuclear 99.7 5.8E-12 1.3E-16 120.6 38.3 395 52-455 251-729 (1018)
31 TIGR00540 hemY_coli hemY prote 99.7 2.1E-12 4.7E-17 121.0 35.0 297 77-400 85-398 (409)
32 PF13429 TPR_15: Tetratricopep 99.6 9.7E-16 2.1E-20 136.4 11.2 256 79-340 13-274 (280)
33 KOG2076 RNA polymerase III tra 99.6 1.6E-11 3.5E-16 116.8 39.1 357 51-436 153-555 (895)
34 PF13429 TPR_15: Tetratricopep 99.6 2.9E-15 6.3E-20 133.4 13.6 250 51-309 22-274 (280)
35 PRK10747 putative protoheme IX 99.6 3.9E-12 8.4E-17 118.6 34.4 291 40-342 87-389 (398)
36 KOG2003 TPR repeat-containing 99.6 3.5E-12 7.7E-17 112.1 30.6 396 33-436 195-689 (840)
37 COG2956 Predicted N-acetylgluc 99.6 7.7E-12 1.7E-16 105.4 29.7 301 35-343 33-347 (389)
38 TIGR00540 hemY_coli hemY prote 99.6 3.8E-12 8.2E-17 119.3 31.6 289 119-435 95-398 (409)
39 KOG2002 TPR-containing nuclear 99.6 6.2E-11 1.4E-15 113.8 37.3 309 26-343 153-481 (1018)
40 KOG1126 DNA-binding cell divis 99.6 2.3E-12 5E-17 118.7 25.6 278 52-344 334-621 (638)
41 KOG1126 DNA-binding cell divis 99.6 3.6E-12 7.9E-17 117.4 25.5 279 89-400 334-619 (638)
42 COG3071 HemY Uncharacterized e 99.6 1.7E-10 3.7E-15 100.4 33.8 289 87-406 97-395 (400)
43 COG3071 HemY Uncharacterized e 99.6 5.3E-11 1.2E-15 103.4 30.6 273 156-436 97-390 (400)
44 KOG2003 TPR repeat-containing 99.5 9.7E-11 2.1E-15 103.2 32.3 216 189-434 502-720 (840)
45 KOG0495 HAT repeat protein [RN 99.5 2.6E-09 5.7E-14 98.6 42.0 354 75-437 517-881 (913)
46 KOG1155 Anaphase-promoting com 99.5 2.2E-10 4.8E-15 101.3 33.7 322 73-436 163-495 (559)
47 KOG0495 HAT repeat protein [RN 99.5 1.3E-08 2.9E-13 94.0 43.9 371 52-436 391-782 (913)
48 KOG1155 Anaphase-promoting com 99.5 2E-10 4.3E-15 101.6 30.1 305 83-418 236-551 (559)
49 PRK12370 invasion protein regu 99.5 3.6E-11 7.8E-16 117.1 28.0 182 90-275 277-468 (553)
50 TIGR02521 type_IV_pilW type IV 99.5 4.6E-11 1E-15 103.6 25.9 200 73-276 30-231 (234)
51 KOG1915 Cell cycle control pro 99.5 3.8E-09 8.1E-14 94.0 36.5 377 52-437 88-537 (677)
52 KOG1173 Anaphase-promoting com 99.5 1.7E-10 3.7E-15 104.5 27.3 286 69-360 239-533 (611)
53 KOG4318 Bicoid mRNA stability 99.5 6.6E-11 1.4E-15 112.4 25.5 85 209-297 201-285 (1088)
54 PRK12370 invasion protein regu 99.4 3.1E-10 6.7E-15 110.6 31.1 249 105-359 253-519 (553)
55 TIGR02521 type_IV_pilW type IV 99.4 1.9E-10 4.1E-15 99.7 25.3 198 108-309 31-229 (234)
56 KOG4318 Bicoid mRNA stability 99.4 1.1E-11 2.4E-16 117.5 18.1 251 130-421 12-285 (1088)
57 PF13041 PPR_2: PPR repeat fam 99.4 1.1E-12 2.5E-17 82.2 6.6 50 175-224 1-50 (50)
58 PF12569 NARP1: NMDA receptor- 99.4 8.4E-09 1.8E-13 97.4 34.6 300 79-400 9-333 (517)
59 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.3E-17 81.1 6.6 50 370-419 1-50 (50)
60 KOG1129 TPR repeat-containing 99.4 2.5E-10 5.5E-15 96.5 20.7 236 107-349 222-462 (478)
61 KOG0547 Translocase of outer m 99.3 1.2E-08 2.7E-13 91.1 31.1 354 52-436 130-566 (606)
62 KOG1156 N-terminal acetyltrans 99.3 2.8E-08 6E-13 92.0 33.9 387 41-437 10-435 (700)
63 KOG1156 N-terminal acetyltrans 99.3 1.7E-07 3.8E-12 86.8 38.4 377 26-438 30-470 (700)
64 PF12569 NARP1: NMDA receptor- 99.3 2.3E-08 4.9E-13 94.6 32.7 312 114-456 10-366 (517)
65 KOG1915 Cell cycle control pro 99.2 6.5E-07 1.4E-11 80.1 36.1 366 73-449 72-514 (677)
66 KOG1173 Anaphase-promoting com 99.2 2.6E-08 5.6E-13 90.7 27.9 280 108-419 244-534 (611)
67 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.4E-14 92.8 17.6 232 76-311 225-457 (478)
68 KOG1174 Anaphase-promoting com 99.2 8.9E-08 1.9E-12 84.0 28.4 289 52-349 211-504 (564)
69 KOG2376 Signal recognition par 99.2 4.6E-07 9.9E-12 83.3 33.5 58 221-278 184-254 (652)
70 KOG1840 Kinesin light chain [C 99.2 1E-08 2.2E-13 95.7 23.6 234 108-341 199-477 (508)
71 cd05804 StaR_like StaR_like; a 99.2 5.9E-07 1.3E-11 83.3 35.7 305 73-400 5-335 (355)
72 KOG1840 Kinesin light chain [C 99.2 1E-08 2.2E-13 95.7 23.4 237 74-310 199-477 (508)
73 PRK11189 lipoprotein NlpI; Pro 99.2 7E-08 1.5E-12 86.3 27.8 219 52-278 41-266 (296)
74 PRK11189 lipoprotein NlpI; Pro 99.2 4.3E-08 9.4E-13 87.6 25.8 149 88-239 40-192 (296)
75 KOG0547 Translocase of outer m 99.2 1.8E-08 4E-13 90.1 22.3 219 50-275 339-564 (606)
76 KOG3785 Uncharacterized conser 99.1 3E-07 6.4E-12 79.2 27.4 244 51-313 36-315 (557)
77 COG3063 PilF Tfp pilus assembl 99.1 1.2E-07 2.5E-12 76.9 23.5 187 114-304 41-228 (250)
78 cd05804 StaR_like StaR_like; a 99.1 8.5E-07 1.8E-11 82.3 33.1 262 81-343 50-336 (355)
79 COG3063 PilF Tfp pilus assembl 99.1 1.8E-07 3.8E-12 75.9 23.6 198 76-277 37-236 (250)
80 KOG2047 mRNA splicing factor [ 99.1 3.1E-06 6.6E-11 78.8 32.8 356 74-436 248-687 (835)
81 KOG4340 Uncharacterized conser 99.1 2.9E-07 6.3E-12 77.4 24.0 198 74-280 10-210 (459)
82 KOG1174 Anaphase-promoting com 99.1 9.1E-06 2E-10 71.8 35.8 259 171-437 226-501 (564)
83 KOG2047 mRNA splicing factor [ 99.0 1.9E-05 4.1E-10 73.7 35.9 366 74-457 138-601 (835)
84 KOG4162 Predicted calmodulin-b 99.0 7.5E-06 1.6E-10 77.9 33.4 207 66-275 315-540 (799)
85 KOG1914 mRNA cleavage and poly 99.0 1.1E-05 2.4E-10 73.7 31.4 138 299-436 347-501 (656)
86 KOG3785 Uncharacterized conser 98.9 1.3E-05 2.8E-10 69.4 29.9 203 178-410 286-497 (557)
87 PF04733 Coatomer_E: Coatomer 98.9 1.3E-07 2.7E-12 83.4 18.3 246 82-343 9-265 (290)
88 KOG1125 TPR repeat-containing 98.9 1.7E-07 3.6E-12 85.9 19.2 245 82-333 293-561 (579)
89 KOG4162 Predicted calmodulin-b 98.9 1.5E-05 3.3E-10 75.9 32.2 349 106-460 321-772 (799)
90 KOG1070 rRNA processing protei 98.9 1.7E-06 3.7E-11 87.0 26.0 243 52-304 1440-1692(1710)
91 PF04733 Coatomer_E: Coatomer 98.9 2.8E-07 6E-12 81.3 18.1 251 116-407 9-269 (290)
92 PLN02789 farnesyltranstransfer 98.9 6E-06 1.3E-10 73.9 26.6 207 84-295 47-267 (320)
93 KOG0548 Molecular co-chaperone 98.8 5E-05 1.1E-09 69.6 31.7 350 51-437 16-456 (539)
94 KOG0624 dsRNA-activated protei 98.8 2.7E-05 5.8E-10 67.2 28.2 318 73-437 37-371 (504)
95 KOG1128 Uncharacterized conser 98.8 6.2E-07 1.3E-11 84.5 19.9 238 68-325 392-634 (777)
96 PRK04841 transcriptional regul 98.8 6.3E-05 1.4E-09 79.1 36.0 322 116-437 382-761 (903)
97 KOG1070 rRNA processing protei 98.8 7.4E-06 1.6E-10 82.7 25.8 241 166-435 1447-1699(1710)
98 KOG0985 Vesicle coat protein c 98.8 0.00014 3.1E-09 71.5 33.3 289 72-399 982-1306(1666)
99 PF12854 PPR_1: PPR repeat 98.8 1.3E-08 2.9E-13 57.1 3.9 32 207-238 2-33 (34)
100 PF12854 PPR_1: PPR repeat 98.8 1.4E-08 3E-13 57.0 4.0 32 367-398 2-33 (34)
101 TIGR03302 OM_YfiO outer membra 98.8 2.3E-06 5E-11 74.1 20.0 188 71-277 30-232 (235)
102 KOG1125 TPR repeat-containing 98.7 7.2E-06 1.6E-10 75.5 23.4 244 52-303 300-562 (579)
103 KOG2376 Signal recognition par 98.7 7.8E-05 1.7E-09 69.1 29.2 340 76-431 14-400 (652)
104 COG5010 TadD Flp pilus assembl 98.7 5.8E-06 1.3E-10 68.8 19.6 162 73-237 66-227 (257)
105 KOG4340 Uncharacterized conser 98.7 1E-05 2.2E-10 68.4 20.5 315 108-434 10-373 (459)
106 PLN02789 farnesyltranstransfer 98.7 2.5E-05 5.5E-10 69.9 24.8 203 52-261 52-268 (320)
107 KOG3617 WD40 and TPR repeat-co 98.7 2.7E-05 5.8E-10 74.7 25.4 316 52-398 743-1171(1416)
108 TIGR03302 OM_YfiO outer membra 98.7 5.2E-06 1.1E-10 72.0 19.2 183 107-311 32-231 (235)
109 PRK04841 transcriptional regul 98.6 0.00014 3.1E-09 76.4 33.0 302 78-401 413-760 (903)
110 COG5010 TadD Flp pilus assembl 98.6 1.8E-05 3.8E-10 66.0 20.4 161 147-311 70-230 (257)
111 KOG0985 Vesicle coat protein c 98.6 0.00031 6.7E-09 69.3 31.4 330 73-434 951-1306(1666)
112 PRK15359 type III secretion sy 98.6 3.8E-06 8.2E-11 66.1 15.3 106 76-182 26-131 (144)
113 KOG0624 dsRNA-activated protei 98.6 0.00033 7.3E-09 60.7 27.3 285 52-343 53-370 (504)
114 PRK14720 transcript cleavage f 98.6 0.00011 2.4E-09 73.6 27.8 237 142-418 30-268 (906)
115 KOG1128 Uncharacterized conser 98.6 8.5E-06 1.8E-10 77.1 18.8 237 139-418 394-634 (777)
116 KOG3616 Selective LIM binding 98.6 8E-05 1.7E-09 70.7 24.7 293 74-432 589-907 (1636)
117 PRK14720 transcript cleavage f 98.6 3.6E-05 7.8E-10 77.0 23.8 217 73-325 30-268 (906)
118 COG4783 Putative Zn-dependent 98.5 7.1E-05 1.5E-09 68.0 23.0 203 159-410 253-462 (484)
119 PRK10370 formate-dependent nit 98.5 6.5E-06 1.4E-10 68.5 15.6 125 87-213 52-179 (198)
120 PRK10370 formate-dependent nit 98.5 6.1E-06 1.3E-10 68.7 15.3 162 80-257 22-186 (198)
121 KOG2053 Mitochondrial inherita 98.5 0.0014 3E-08 64.2 37.0 213 26-243 32-257 (932)
122 PRK15179 Vi polysaccharide bio 98.5 5.2E-05 1.1E-09 75.0 23.5 148 69-218 81-228 (694)
123 KOG0548 Molecular co-chaperone 98.5 0.00043 9.3E-09 63.7 27.2 351 82-437 10-422 (539)
124 COG4783 Putative Zn-dependent 98.5 0.00014 2.9E-09 66.2 23.8 139 83-241 315-454 (484)
125 KOG1127 TPR repeat-containing 98.5 0.00038 8.2E-09 68.6 27.2 149 52-204 507-657 (1238)
126 KOG3060 Uncharacterized conser 98.5 0.00032 7E-09 58.2 22.8 165 109-277 53-220 (289)
127 TIGR02552 LcrH_SycD type III s 98.4 1.1E-05 2.4E-10 63.0 14.3 93 112-205 21-113 (135)
128 PRK15179 Vi polysaccharide bio 98.4 0.00013 2.7E-09 72.4 24.2 240 67-328 21-269 (694)
129 KOG3617 WD40 and TPR repeat-co 98.4 0.00051 1.1E-08 66.4 26.5 326 73-436 725-1109(1416)
130 PRK15359 type III secretion sy 98.4 3.9E-05 8.5E-10 60.4 16.1 93 113-206 29-121 (144)
131 KOG3081 Vesicle coat complex C 98.4 0.00038 8.3E-09 58.3 21.8 117 184-311 115-235 (299)
132 TIGR02552 LcrH_SycD type III s 98.4 2E-05 4.4E-10 61.6 14.2 98 73-171 16-113 (135)
133 KOG1127 TPR repeat-containing 98.4 0.00035 7.6E-09 68.9 24.4 182 90-275 474-657 (1238)
134 KOG3616 Selective LIM binding 98.4 0.00028 6E-09 67.2 23.0 139 183-340 738-876 (1636)
135 KOG3081 Vesicle coat complex C 98.3 0.0011 2.3E-08 55.7 22.8 142 77-227 111-256 (299)
136 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3.1E-11 49.7 4.3 34 374-407 2-35 (35)
137 PF10037 MRP-S27: Mitochondria 98.3 2.9E-05 6.2E-10 71.3 14.7 124 137-261 60-186 (429)
138 TIGR00756 PPR pentatricopeptid 98.2 2.1E-06 4.5E-11 49.0 4.3 33 179-211 2-34 (35)
139 PF13812 PPR_3: Pentatricopept 98.2 2.4E-06 5.2E-11 48.3 4.1 33 178-210 2-34 (34)
140 PF13812 PPR_3: Pentatricopept 98.2 3.1E-06 6.6E-11 47.9 4.4 33 373-405 2-34 (34)
141 PF09976 TPR_21: Tetratricopep 98.2 0.00018 4E-09 56.8 15.8 126 75-202 13-143 (145)
142 KOG3060 Uncharacterized conser 98.1 0.0032 6.9E-08 52.6 23.5 187 52-241 27-220 (289)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00018 3.9E-09 65.9 16.8 121 215-341 172-295 (395)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.4E-09 67.3 15.4 127 107-239 168-295 (395)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00022 4.7E-09 56.4 14.8 115 156-273 24-143 (145)
146 PF10037 MRP-S27: Mitochondria 98.0 0.0001 2.2E-09 67.9 12.7 125 171-296 60-186 (429)
147 PF05843 Suf: Suppressor of fo 98.0 0.00019 4.1E-09 63.5 14.0 131 75-206 2-136 (280)
148 KOG1914 mRNA cleavage and poly 98.0 0.014 3E-07 54.2 27.1 184 124-311 309-500 (656)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00023 5.1E-09 54.0 12.5 95 76-170 4-103 (119)
150 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.8E-09 52.5 9.6 76 183-259 31-115 (120)
151 cd00189 TPR Tetratricopeptide 97.9 0.0002 4.4E-09 51.5 11.0 92 77-169 3-94 (100)
152 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 43.9 3.5 29 179-207 2-30 (31)
153 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.2E-10 43.4 3.6 30 374-403 2-31 (31)
154 KOG2053 Mitochondrial inherita 97.9 0.033 7.1E-07 55.0 31.3 102 85-188 54-155 (932)
155 PF14938 SNAP: Soluble NSF att 97.9 0.0028 6E-08 56.4 18.9 211 77-318 38-272 (282)
156 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00058 1.3E-08 51.8 12.8 17 222-238 86-102 (119)
157 PF08579 RPM2: Mitochondrial r 97.8 0.00036 7.8E-09 50.3 10.0 80 215-295 28-116 (120)
158 cd00189 TPR Tetratricopeptide 97.8 0.00039 8.5E-09 49.9 10.8 91 113-204 5-95 (100)
159 PF06239 ECSIT: Evolutionarily 97.8 0.0008 1.7E-08 55.0 12.3 112 303-421 34-152 (228)
160 PRK10866 outer membrane biogen 97.7 0.013 2.9E-07 50.5 20.4 183 73-275 31-239 (243)
161 PRK15363 pathogenicity island 97.7 0.0021 4.6E-08 50.1 13.6 97 73-170 34-130 (157)
162 PRK02603 photosystem I assembl 97.7 0.0028 6E-08 51.8 15.1 83 179-263 37-121 (172)
163 PLN03088 SGT1, suppressor of 97.7 0.0014 3E-08 60.3 14.7 89 81-170 9-97 (356)
164 KOG2041 WD40 repeat protein [G 97.7 0.049 1.1E-06 52.3 24.5 121 71-202 689-821 (1189)
165 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.7E-08 58.4 13.7 131 109-241 2-136 (280)
166 PRK02603 photosystem I assembl 97.7 0.0072 1.6E-07 49.3 16.9 88 109-196 36-125 (172)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00012 2.5E-09 51.6 4.9 19 218-236 31-49 (84)
168 KOG2796 Uncharacterized conser 97.6 0.0067 1.4E-07 50.9 15.4 190 35-241 120-315 (366)
169 PLN03088 SGT1, suppressor of 97.6 0.0022 4.9E-08 58.9 14.2 91 115-206 9-99 (356)
170 PRK15363 pathogenicity island 97.6 0.005 1.1E-07 48.0 13.8 93 112-205 39-131 (157)
171 PF14938 SNAP: Soluble NSF att 97.6 0.0056 1.2E-07 54.4 16.2 139 214-356 116-275 (282)
172 CHL00033 ycf3 photosystem I as 97.6 0.0022 4.7E-08 52.2 12.5 80 109-188 36-117 (168)
173 PF12895 Apc3: Anaphase-promot 97.5 0.00045 9.8E-09 48.6 7.0 79 226-307 3-82 (84)
174 KOG2796 Uncharacterized conser 97.5 0.037 8E-07 46.7 18.7 155 125-290 166-326 (366)
175 PF14559 TPR_19: Tetratricopep 97.5 0.00048 1E-08 46.2 6.6 62 85-148 2-63 (68)
176 CHL00033 ycf3 photosystem I as 97.5 0.0035 7.5E-08 51.0 12.7 95 73-168 34-138 (168)
177 PF06239 ECSIT: Evolutionarily 97.5 0.00089 1.9E-08 54.7 8.8 51 174-224 44-99 (228)
178 PRK10153 DNA-binding transcrip 97.5 0.01 2.3E-07 57.2 17.6 144 69-215 332-489 (517)
179 KOG0550 Molecular chaperone (D 97.5 0.044 9.5E-07 49.4 19.6 255 82-343 57-350 (486)
180 PRK10866 outer membrane biogen 97.5 0.029 6.3E-07 48.5 18.5 54 288-341 180-239 (243)
181 COG4700 Uncharacterized protei 97.4 0.024 5.2E-07 45.1 15.6 130 175-306 87-216 (251)
182 PRK10153 DNA-binding transcrip 97.4 0.017 3.8E-07 55.7 18.3 135 140-277 334-482 (517)
183 PF13525 YfiO: Outer membrane 97.4 0.053 1.2E-06 45.5 19.2 181 74-267 5-197 (203)
184 COG4235 Cytochrome c biogenesi 97.4 0.01 2.2E-07 51.3 14.5 128 90-220 138-268 (287)
185 COG4235 Cytochrome c biogenesi 97.4 0.01 2.2E-07 51.3 14.5 114 140-257 153-269 (287)
186 PF13432 TPR_16: Tetratricopep 97.4 0.00088 1.9E-08 44.4 6.7 58 80-137 3-60 (65)
187 KOG1130 Predicted G-alpha GTPa 97.4 0.0018 3.9E-08 57.7 10.1 135 284-436 196-344 (639)
188 PF12688 TPR_5: Tetratrico pep 97.3 0.019 4.1E-07 43.1 13.8 89 80-170 7-102 (120)
189 PF04840 Vps16_C: Vps16, C-ter 97.3 0.11 2.5E-06 46.6 27.7 23 76-98 2-24 (319)
190 PF13414 TPR_11: TPR repeat; P 97.3 0.0011 2.3E-08 44.6 6.5 64 73-136 2-66 (69)
191 COG3898 Uncharacterized membra 97.3 0.12 2.5E-06 46.4 31.8 317 43-401 59-392 (531)
192 PF12688 TPR_5: Tetratrico pep 97.3 0.024 5.2E-07 42.6 14.0 90 184-275 8-102 (120)
193 PF04840 Vps16_C: Vps16, C-ter 97.3 0.13 2.8E-06 46.3 24.3 113 283-434 177-289 (319)
194 KOG0553 TPR repeat-containing 97.3 0.0059 1.3E-07 52.4 11.7 101 116-219 89-189 (304)
195 PF13414 TPR_11: TPR repeat; P 97.2 0.0024 5.3E-08 42.8 7.5 64 371-436 2-67 (69)
196 KOG1538 Uncharacterized conser 97.2 0.19 4E-06 48.2 21.6 221 71-311 553-801 (1081)
197 KOG0553 TPR repeat-containing 97.2 0.0045 9.8E-08 53.1 10.3 88 82-170 89-176 (304)
198 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.4E-08 44.3 5.5 22 148-169 30-51 (68)
199 PF13281 DUF4071: Domain of un 97.2 0.14 3E-06 46.6 19.8 31 247-277 304-334 (374)
200 PF07079 DUF1347: Protein of u 97.1 0.2 4.3E-06 46.0 29.9 375 52-434 21-522 (549)
201 PF13432 TPR_16: Tetratricopep 97.1 0.0028 6E-08 41.9 6.9 25 178-202 32-56 (65)
202 PF13525 YfiO: Outer membrane 97.1 0.1 2.2E-06 43.8 17.5 42 290-331 148-195 (203)
203 PF03704 BTAD: Bacterial trans 97.0 0.0072 1.6E-07 47.8 9.7 71 76-146 64-139 (146)
204 PRK10803 tol-pal system protei 97.0 0.018 3.9E-07 50.2 12.8 94 77-170 146-244 (263)
205 KOG1130 Predicted G-alpha GTPa 97.0 0.015 3.2E-07 52.2 11.9 261 82-342 25-343 (639)
206 PF12921 ATP13: Mitochondrial 97.0 0.015 3.2E-07 44.1 10.4 100 313-420 1-101 (126)
207 PF13281 DUF4071: Domain of un 97.0 0.26 5.6E-06 45.0 19.6 159 182-343 146-334 (374)
208 PF13371 TPR_9: Tetratricopept 96.9 0.0069 1.5E-07 41.1 7.6 58 81-138 2-59 (73)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.37 8E-06 44.2 35.7 129 315-446 398-539 (660)
210 KOG2280 Vacuolar assembly/sort 96.9 0.53 1.2E-05 46.1 31.1 336 56-434 414-797 (829)
211 PRK10803 tol-pal system protei 96.8 0.029 6.3E-07 48.9 12.5 86 188-277 154-246 (263)
212 PF12921 ATP13: Mitochondrial 96.7 0.019 4.2E-07 43.5 9.2 97 73-188 1-99 (126)
213 smart00299 CLH Clathrin heavy 96.7 0.21 4.5E-06 39.0 15.4 85 78-169 11-95 (140)
214 COG4700 Uncharacterized protei 96.6 0.25 5.5E-06 39.5 17.7 132 209-341 86-220 (251)
215 PF04053 Coatomer_WDAD: Coatom 96.6 0.087 1.9E-06 49.7 14.8 169 35-237 259-427 (443)
216 PF03704 BTAD: Bacterial trans 96.6 0.029 6.4E-07 44.2 10.1 75 375-451 65-145 (146)
217 KOG2041 WD40 repeat protein [G 96.6 0.59 1.3E-05 45.4 19.6 250 106-400 690-951 (1189)
218 PF13424 TPR_12: Tetratricopep 96.5 0.018 4E-07 39.6 7.3 63 373-435 6-74 (78)
219 PRK15331 chaperone protein Sic 96.5 0.044 9.4E-07 43.1 9.7 88 82-170 45-132 (165)
220 KOG3941 Intermediate in Toll s 96.4 0.061 1.3E-06 45.9 11.1 113 303-422 54-173 (406)
221 KOG1941 Acetylcholine receptor 96.4 0.52 1.1E-05 42.0 16.8 167 250-434 85-273 (518)
222 KOG0550 Molecular chaperone (D 96.3 0.8 1.7E-05 41.7 23.7 249 52-311 64-349 (486)
223 KOG2280 Vacuolar assembly/sort 96.3 0.96 2.1E-05 44.4 19.5 295 32-340 425-770 (829)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.15 3.2E-06 47.3 13.6 66 72-137 73-141 (453)
225 PF13371 TPR_9: Tetratricopept 96.3 0.03 6.6E-07 37.9 7.3 52 187-239 5-56 (73)
226 PF10300 DUF3808: Protein of u 96.2 0.71 1.5E-05 44.3 18.7 91 77-169 191-293 (468)
227 PRK11906 transcriptional regul 96.2 0.37 8E-06 44.8 15.7 149 52-203 273-433 (458)
228 PF07079 DUF1347: Protein of u 96.2 1 2.2E-05 41.6 29.4 113 295-412 391-530 (549)
229 KOG1538 Uncharacterized conser 96.2 0.7 1.5E-05 44.5 17.5 56 179-237 600-657 (1081)
230 COG3118 Thioredoxin domain-con 96.2 0.57 1.2E-05 40.7 15.6 143 117-262 143-286 (304)
231 PRK15331 chaperone protein Sic 96.2 0.35 7.5E-06 38.2 13.2 93 113-206 42-134 (165)
232 PF13424 TPR_12: Tetratricopep 96.1 0.021 4.6E-07 39.3 6.1 60 249-308 6-71 (78)
233 COG3118 Thioredoxin domain-con 95.9 1 2.2E-05 39.2 16.0 149 80-230 140-290 (304)
234 KOG1585 Protein required for f 95.9 0.89 1.9E-05 38.3 15.4 25 110-134 33-57 (308)
235 PF04053 Coatomer_WDAD: Coatom 95.9 0.39 8.4E-06 45.5 14.7 131 109-272 296-426 (443)
236 KOG2114 Vacuolar assembly/sort 95.8 0.94 2E-05 45.1 17.1 76 155-236 380-455 (933)
237 PF09205 DUF1955: Domain of un 95.8 0.57 1.2E-05 35.3 12.1 63 375-438 89-151 (161)
238 COG4105 ComL DNA uptake lipopr 95.7 1.1 2.5E-05 38.1 19.0 59 182-241 172-233 (254)
239 PF07035 Mic1: Colon cancer-as 95.7 0.83 1.8E-05 36.5 15.9 136 197-343 14-149 (167)
240 KOG3941 Intermediate in Toll s 95.7 0.18 3.9E-06 43.2 10.4 89 174-263 64-173 (406)
241 COG4649 Uncharacterized protei 95.7 0.83 1.8E-05 36.3 14.1 133 73-206 58-196 (221)
242 PF10300 DUF3808: Protein of u 95.7 2.2 4.8E-05 41.1 22.4 85 157-241 247-334 (468)
243 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.46 1E-05 44.1 13.7 65 141-205 73-140 (453)
244 PF13428 TPR_14: Tetratricopep 95.5 0.043 9.4E-07 32.7 4.8 39 76-114 3-41 (44)
245 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.1 4.4E-05 39.6 22.8 143 212-359 397-545 (660)
246 COG4105 ComL DNA uptake lipopr 95.5 1.4 3E-05 37.6 20.7 181 80-277 40-233 (254)
247 KOG0543 FKBP-type peptidyl-pro 95.3 0.53 1.2E-05 42.7 12.7 97 314-436 257-355 (397)
248 PF13170 DUF4003: Protein of u 95.2 1.4 3E-05 39.3 15.1 130 124-256 78-225 (297)
249 KOG0543 FKBP-type peptidyl-pro 95.2 0.36 7.8E-06 43.7 11.3 96 143-240 257-354 (397)
250 KOG1920 IkappaB kinase complex 95.1 4.5 9.8E-05 42.2 19.7 77 256-341 947-1026(1265)
251 PF08631 SPO22: Meiosis protei 95.0 2.4 5.2E-05 37.6 25.3 122 85-206 4-150 (278)
252 smart00299 CLH Clathrin heavy 95.0 1.3 2.9E-05 34.4 16.3 40 184-224 14-53 (140)
253 PF13512 TPR_18: Tetratricopep 94.9 0.79 1.7E-05 35.4 11.0 82 73-154 9-93 (142)
254 COG3629 DnrI DNA-binding trans 94.9 0.38 8.3E-06 41.9 10.4 76 110-186 155-236 (280)
255 KOG4555 TPR repeat-containing 94.7 1 2.2E-05 33.9 10.5 86 221-309 52-141 (175)
256 COG3898 Uncharacterized membra 94.6 3.5 7.7E-05 37.5 31.6 292 44-348 91-397 (531)
257 KOG4555 TPR repeat-containing 94.4 1.5 3.3E-05 33.0 11.0 87 83-169 52-141 (175)
258 KOG2610 Uncharacterized conser 94.4 3.2 7E-05 36.8 14.7 154 85-239 114-274 (491)
259 KOG2114 Vacuolar assembly/sort 94.4 6.3 0.00014 39.6 24.3 184 73-275 333-517 (933)
260 COG1729 Uncharacterized protei 94.3 1.3 2.8E-05 38.1 12.0 105 74-179 142-251 (262)
261 COG1729 Uncharacterized protei 94.3 1.8 3.9E-05 37.3 12.9 97 108-206 142-244 (262)
262 COG3629 DnrI DNA-binding trans 94.2 0.65 1.4E-05 40.5 10.3 77 145-221 155-236 (280)
263 PF07035 Mic1: Colon cancer-as 94.0 2.6 5.6E-05 33.7 15.1 136 128-277 14-149 (167)
264 PF04097 Nic96: Nup93/Nic96; 94.0 7.2 0.00016 39.1 18.4 43 79-121 116-158 (613)
265 PF13428 TPR_14: Tetratricopep 94.0 0.21 4.5E-06 29.7 5.0 37 110-147 3-39 (44)
266 KOG1920 IkappaB kinase complex 94.0 1.3 2.8E-05 45.9 13.1 199 35-275 849-1053(1265)
267 PRK11906 transcriptional regul 93.9 5.7 0.00012 37.3 16.0 130 75-205 252-400 (458)
268 KOG2610 Uncharacterized conser 93.9 2.5 5.5E-05 37.5 13.0 152 155-308 115-272 (491)
269 PF13176 TPR_7: Tetratricopept 93.6 0.19 4.2E-06 28.3 4.1 26 374-399 1-26 (36)
270 PF11207 DUF2989: Protein of u 93.4 2 4.3E-05 35.3 11.0 71 91-162 123-197 (203)
271 PF08631 SPO22: Meiosis protei 93.3 5.7 0.00012 35.3 27.1 62 214-277 86-150 (278)
272 PF13431 TPR_17: Tetratricopep 93.2 0.11 2.4E-06 28.8 2.7 30 62-94 4-33 (34)
273 COG0457 NrfG FOG: TPR repeat [ 93.0 4.9 0.00011 33.8 26.3 187 88-276 37-230 (291)
274 PF10602 RPN7: 26S proteasome 93.0 1.7 3.6E-05 35.5 10.3 97 286-400 39-141 (177)
275 PF13929 mRNA_stabil: mRNA sta 92.9 6.1 0.00013 34.6 15.9 137 88-224 142-290 (292)
276 PF02259 FAT: FAT domain; Int 92.7 7.3 0.00016 35.9 15.7 201 218-435 4-212 (352)
277 PF09205 DUF1955: Domain of un 92.7 3.5 7.5E-05 31.3 15.5 135 189-345 14-151 (161)
278 COG4785 NlpI Lipoprotein NlpI, 92.6 5.4 0.00012 33.2 13.9 183 88-278 79-267 (297)
279 PF00515 TPR_1: Tetratricopept 92.4 0.34 7.4E-06 26.7 4.1 28 373-400 2-29 (34)
280 PF00637 Clathrin: Region in C 92.3 0.097 2.1E-06 41.1 2.2 83 183-273 13-95 (143)
281 PF04184 ST7: ST7 protein; In 92.1 11 0.00024 35.7 18.7 80 178-257 260-340 (539)
282 KOG4570 Uncharacterized conser 92.0 0.91 2E-05 39.7 7.7 102 68-170 58-162 (418)
283 COG4649 Uncharacterized protei 92.0 5.4 0.00012 31.9 15.8 134 35-170 55-194 (221)
284 PF07575 Nucleopor_Nup85: Nup8 91.9 12 0.00026 37.3 16.6 155 250-409 374-532 (566)
285 KOG1550 Extracellular protein 91.8 15 0.00032 36.5 23.9 183 90-279 228-428 (552)
286 PF13512 TPR_18: Tetratricopep 91.5 5.4 0.00012 30.9 10.7 85 39-123 11-97 (142)
287 PF13176 TPR_7: Tetratricopept 91.5 0.45 9.7E-06 26.8 3.8 23 77-99 2-24 (36)
288 PF13431 TPR_17: Tetratricopep 91.2 0.28 6E-06 27.2 2.7 31 98-128 3-33 (34)
289 PF07719 TPR_2: Tetratricopept 91.2 0.57 1.2E-05 25.6 4.1 28 373-400 2-29 (34)
290 PF13929 mRNA_stabil: mRNA sta 91.0 10 0.00022 33.3 16.8 137 157-293 142-288 (292)
291 COG0457 NrfG FOG: TPR repeat [ 90.8 9 0.00019 32.2 28.9 220 121-343 36-265 (291)
292 PF10602 RPN7: 26S proteasome 90.5 1.5 3.3E-05 35.7 7.5 63 374-436 38-102 (177)
293 PF09613 HrpB1_HrpK: Bacterial 90.4 7.6 0.00017 30.7 12.1 51 86-136 22-72 (160)
294 KOG2297 Predicted translation 90.2 12 0.00027 32.9 15.9 33 12-45 36-68 (412)
295 KOG1585 Protein required for f 90.1 11 0.00024 32.1 17.4 206 73-306 30-250 (308)
296 KOG4570 Uncharacterized conser 90.0 3.7 8.1E-05 36.1 9.5 103 137-241 58-164 (418)
297 COG1747 Uncharacterized N-term 90.0 18 0.00039 34.4 20.2 93 211-309 65-157 (711)
298 KOG1941 Acetylcholine receptor 89.9 15 0.00032 33.3 19.0 46 118-163 16-63 (518)
299 cd00923 Cyt_c_Oxidase_Va Cytoc 89.6 2.2 4.9E-05 30.1 6.4 44 92-135 25-69 (103)
300 PF09613 HrpB1_HrpK: Bacterial 89.6 9 0.00019 30.4 12.5 17 189-205 56-72 (160)
301 KOG2063 Vacuolar assembly/sort 89.4 29 0.00063 36.0 18.8 116 179-295 506-638 (877)
302 PF11207 DUF2989: Protein of u 89.3 4.4 9.6E-05 33.4 9.0 78 153-232 117-198 (203)
303 TIGR02561 HrpB1_HrpK type III 89.3 8.8 0.00019 29.9 10.1 52 86-137 22-73 (153)
304 PF13170 DUF4003: Protein of u 89.1 16 0.00035 32.7 22.3 150 265-436 79-250 (297)
305 PF02284 COX5A: Cytochrome c o 88.8 2.2 4.8E-05 30.5 6.1 45 92-136 28-73 (108)
306 PF13374 TPR_10: Tetratricopep 88.7 1.2 2.6E-05 25.7 4.3 28 373-400 3-30 (42)
307 COG4785 NlpI Lipoprotein NlpI, 88.4 14 0.0003 30.9 16.6 178 157-343 79-266 (297)
308 PF00515 TPR_1: Tetratricopept 87.8 1.2 2.7E-05 24.3 3.7 27 110-136 3-29 (34)
309 PF10345 Cohesin_load: Cohesin 87.7 33 0.00072 34.6 30.4 354 73-450 29-455 (608)
310 PF10345 Cohesin_load: Cohesin 87.0 36 0.00078 34.3 33.5 57 378-435 541-605 (608)
311 PRK15180 Vi polysaccharide bio 87.0 28 0.0006 32.9 24.6 110 26-138 312-421 (831)
312 KOG0276 Vesicle coat complex C 86.8 13 0.00029 36.0 11.6 74 154-241 648-721 (794)
313 COG4455 ImpE Protein of avirul 86.7 5.1 0.00011 33.4 7.8 50 82-131 9-58 (273)
314 COG4455 ImpE Protein of avirul 86.4 6.1 0.00013 32.9 8.1 79 110-189 3-84 (273)
315 PF13374 TPR_10: Tetratricopep 86.3 1.8 3.9E-05 24.9 4.1 27 75-101 3-29 (42)
316 TIGR02561 HrpB1_HrpK type III 86.1 14 0.00031 28.8 10.0 18 383-400 55-72 (153)
317 PF04184 ST7: ST7 protein; In 86.1 32 0.0007 32.8 16.7 55 149-203 265-321 (539)
318 COG3947 Response regulator con 86.0 5.4 0.00012 34.8 8.0 59 110-169 281-339 (361)
319 KOG0276 Vesicle coat complex C 85.6 28 0.00061 34.0 13.0 132 146-310 617-748 (794)
320 COG5159 RPN6 26S proteasome re 85.4 24 0.00051 30.9 11.4 22 377-398 130-151 (421)
321 KOG2297 Predicted translation 85.3 26 0.00056 31.0 15.6 16 250-265 323-338 (412)
322 KOG1258 mRNA processing protei 85.3 39 0.00084 33.0 28.9 133 73-206 44-180 (577)
323 PF07719 TPR_2: Tetratricopept 85.1 2.4 5.1E-05 23.0 4.0 26 111-136 4-29 (34)
324 PF02259 FAT: FAT domain; Int 84.9 32 0.00068 31.6 24.1 31 386-418 272-303 (352)
325 PF00637 Clathrin: Region in C 84.6 0.49 1.1E-05 37.0 1.3 53 219-272 14-66 (143)
326 PF13181 TPR_8: Tetratricopept 84.1 3.4 7.4E-05 22.4 4.3 27 374-400 3-29 (34)
327 PF13762 MNE1: Mitochondrial s 83.3 20 0.00043 28.0 10.5 80 146-225 42-128 (145)
328 KOG0991 Replication factor C, 83.0 28 0.00061 29.6 12.3 91 258-351 169-275 (333)
329 TIGR03504 FimV_Cterm FimV C-te 82.9 3.2 6.8E-05 24.6 3.9 25 378-402 5-29 (44)
330 COG2909 MalT ATP-dependent tra 82.7 62 0.0014 33.3 31.8 221 189-432 427-684 (894)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 82.0 16 0.00035 26.0 9.4 62 387-450 22-84 (103)
332 COG3947 Response regulator con 81.4 37 0.00081 29.9 15.0 67 286-352 282-356 (361)
333 PF07721 TPR_4: Tetratricopept 80.8 3.1 6.8E-05 21.2 3.0 21 376-396 5-25 (26)
334 PF13762 MNE1: Mitochondrial s 80.8 25 0.00054 27.4 10.6 73 287-359 43-125 (145)
335 PF08424 NRDE-2: NRDE-2, neces 80.5 46 0.00099 30.3 16.9 77 91-168 48-127 (321)
336 PF07163 Pex26: Pex26 protein; 80.5 22 0.00047 31.1 9.4 56 81-136 90-146 (309)
337 TIGR03504 FimV_Cterm FimV C-te 79.3 4.7 0.0001 23.9 3.7 25 320-344 5-29 (44)
338 PF13174 TPR_6: Tetratricopept 79.2 4.3 9.2E-05 21.7 3.5 22 219-240 7-28 (33)
339 KOG1464 COP9 signalosome, subu 79.2 42 0.00091 29.2 17.8 264 68-339 20-328 (440)
340 KOG2066 Vacuolar assembly/sort 78.2 82 0.0018 32.0 17.3 156 150-314 363-536 (846)
341 COG1747 Uncharacterized N-term 77.6 69 0.0015 30.8 24.5 178 140-323 63-248 (711)
342 PRK14956 DNA polymerase III su 77.5 48 0.001 32.0 11.8 43 56-101 185-227 (484)
343 PF10579 Rapsyn_N: Rapsyn N-te 77.3 11 0.00024 25.7 5.4 49 384-432 18-68 (80)
344 COG2976 Uncharacterized protei 76.9 41 0.00088 27.8 14.0 92 323-437 98-189 (207)
345 PF13181 TPR_8: Tetratricopept 76.4 8.3 0.00018 20.8 4.2 27 110-136 3-29 (34)
346 KOG1258 mRNA processing protei 75.6 84 0.0018 30.8 29.8 95 248-343 297-395 (577)
347 KOG4077 Cytochrome c oxidase, 75.1 19 0.00042 27.1 6.6 42 95-136 70-112 (149)
348 TIGR02508 type_III_yscG type I 75.1 28 0.00061 25.0 9.0 88 263-354 20-107 (115)
349 PF06552 TOM20_plant: Plant sp 75.0 35 0.00076 27.7 8.6 59 93-153 54-123 (186)
350 TIGR02397 dnaX_nterm DNA polym 74.9 70 0.0015 29.5 13.8 72 67-141 191-276 (355)
351 KOG1550 Extracellular protein 74.8 94 0.002 30.9 23.1 180 53-243 228-428 (552)
352 PF07163 Pex26: Pex26 protein; 74.7 59 0.0013 28.6 10.4 85 253-337 88-181 (309)
353 smart00028 TPR Tetratricopepti 74.7 7.3 0.00016 19.9 3.8 27 374-400 3-29 (34)
354 PF02284 COX5A: Cytochrome c o 73.0 33 0.00071 24.8 10.6 72 380-452 16-89 (108)
355 KOG4234 TPR repeat-containing 73.0 53 0.0012 27.3 10.6 92 324-436 105-197 (271)
356 TIGR02508 type_III_yscG type I 72.9 32 0.0007 24.7 7.9 10 156-165 52-61 (115)
357 PF02847 MA3: MA3 domain; Int 72.4 23 0.0005 26.1 7.0 76 376-453 6-83 (113)
358 KOG4648 Uncharacterized conser 72.4 13 0.00028 33.4 6.1 88 82-170 105-192 (536)
359 PRK09687 putative lyase; Provi 72.0 72 0.0016 28.4 29.3 233 141-418 35-278 (280)
360 KOG4234 TPR repeat-containing 71.4 58 0.0013 27.0 10.1 88 118-206 105-197 (271)
361 PF10579 Rapsyn_N: Rapsyn N-te 71.0 18 0.00039 24.6 5.3 45 86-130 18-65 (80)
362 KOG2066 Vacuolar assembly/sort 70.5 1.3E+02 0.0028 30.7 26.3 149 81-239 363-532 (846)
363 PF11848 DUF3368: Domain of un 69.9 21 0.00045 21.6 5.1 33 383-415 13-45 (48)
364 PF11846 DUF3366: Domain of un 68.3 20 0.00043 29.7 6.5 51 52-103 123-173 (193)
365 KOG1586 Protein required for f 68.3 76 0.0016 27.1 16.7 23 221-243 163-185 (288)
366 PF09477 Type_III_YscG: Bacter 68.2 44 0.00096 24.4 8.7 9 119-127 51-59 (116)
367 PRK09111 DNA polymerase III su 67.9 1.4E+02 0.003 30.0 14.5 73 67-142 206-292 (598)
368 KOG2396 HAT (Half-A-TPR) repea 67.9 1.2E+02 0.0026 29.2 33.8 383 53-451 87-539 (568)
369 KOG0686 COP9 signalosome, subu 67.9 1.1E+02 0.0023 28.6 14.6 92 144-237 151-254 (466)
370 PF08424 NRDE-2: NRDE-2, neces 67.5 99 0.0022 28.2 17.3 119 124-243 47-185 (321)
371 PRK10564 maltose regulon perip 66.8 17 0.00037 32.2 5.7 43 369-411 253-296 (303)
372 KOG4507 Uncharacterized conser 66.7 24 0.00051 34.3 7.0 103 154-259 618-721 (886)
373 KOG1464 COP9 signalosome, subu 65.8 92 0.002 27.2 23.0 241 157-399 41-330 (440)
374 cd00280 TRFH Telomeric Repeat 64.8 77 0.0017 25.9 10.8 21 150-170 118-138 (200)
375 PF14669 Asp_Glu_race_2: Putat 64.7 79 0.0017 26.0 14.6 176 69-272 3-205 (233)
376 PF11846 DUF3366: Domain of un 64.6 40 0.00088 27.9 7.6 32 174-205 141-172 (193)
377 PF11848 DUF3368: Domain of un 64.3 30 0.00064 21.0 5.1 33 188-220 13-45 (48)
378 PF06552 TOM20_plant: Plant sp 63.8 77 0.0017 25.8 8.4 109 90-207 7-137 (186)
379 KOG4077 Cytochrome c oxidase, 63.7 48 0.001 25.1 6.7 44 268-311 69-112 (149)
380 KOG4507 Uncharacterized conser 63.5 69 0.0015 31.4 9.3 115 92-206 591-705 (886)
381 PF12862 Apc5: Anaphase-promot 63.4 47 0.001 23.6 6.7 22 219-240 48-69 (94)
382 COG2976 Uncharacterized protei 62.8 88 0.0019 25.9 15.5 167 26-207 14-189 (207)
383 PF14689 SPOB_a: Sensor_kinase 62.2 28 0.0006 22.5 4.8 22 217-238 28-49 (62)
384 KOG4642 Chaperone-dependent E3 62.1 1E+02 0.0022 26.5 10.9 81 87-169 23-104 (284)
385 PF07575 Nucleopor_Nup85: Nup8 61.9 46 0.001 33.2 8.6 33 326-358 507-539 (566)
386 cd08819 CARD_MDA5_2 Caspase ac 61.9 52 0.0011 23.0 7.2 36 260-300 48-83 (88)
387 KOG0403 Neoplastic transformat 61.6 1.5E+02 0.0032 28.1 28.7 72 374-448 511-584 (645)
388 PF09454 Vps23_core: Vps23 cor 61.3 13 0.00029 24.3 3.2 51 71-121 5-55 (65)
389 PRK14951 DNA polymerase III su 61.3 1.4E+02 0.0031 30.0 11.7 84 55-142 187-284 (618)
390 KOG4648 Uncharacterized conser 60.8 56 0.0012 29.6 7.8 81 115-203 104-184 (536)
391 PLN03025 replication factor C 60.8 1.3E+02 0.0029 27.3 14.8 88 54-145 161-261 (319)
392 PRK09687 putative lyase; Provi 60.7 1.2E+02 0.0027 26.9 26.9 73 282-359 205-277 (280)
393 PRK14958 DNA polymerase III su 60.5 1.6E+02 0.0034 29.0 11.7 87 54-144 181-281 (509)
394 PRK07003 DNA polymerase III su 60.5 1.3E+02 0.0029 31.1 11.1 37 105-142 243-279 (830)
395 cd08819 CARD_MDA5_2 Caspase ac 60.3 56 0.0012 22.9 7.4 66 196-268 21-86 (88)
396 PF10366 Vps39_1: Vacuolar sor 60.2 28 0.0006 25.7 5.1 28 315-342 40-67 (108)
397 PRK08691 DNA polymerase III su 60.0 1.4E+02 0.0031 30.4 11.3 87 52-142 179-279 (709)
398 KOG0890 Protein kinase of the 59.8 3.5E+02 0.0077 31.9 22.5 64 372-438 1670-1733(2382)
399 PF14689 SPOB_a: Sensor_kinase 59.7 26 0.00056 22.6 4.4 24 318-341 27-50 (62)
400 PF14853 Fis1_TPR_C: Fis1 C-te 59.6 40 0.00087 21.0 5.0 35 378-414 7-41 (53)
401 PHA02875 ankyrin repeat protei 58.9 1.6E+02 0.0036 27.8 17.4 76 118-200 9-88 (413)
402 KOG0991 Replication factor C, 58.7 1.2E+02 0.0026 26.1 13.3 47 209-258 236-282 (333)
403 PRK10941 hypothetical protein; 58.3 1.3E+02 0.0029 26.5 10.6 78 110-188 183-262 (269)
404 PF11817 Foie-gras_1: Foie gra 58.2 61 0.0013 28.1 7.9 54 217-270 183-240 (247)
405 PHA02875 ankyrin repeat protei 57.8 1.7E+02 0.0037 27.7 14.8 18 150-167 72-89 (413)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 56.5 86 0.0019 23.8 8.3 78 193-275 49-126 (126)
407 COG5159 RPN6 26S proteasome re 56.0 1.5E+02 0.0032 26.3 16.8 23 216-238 129-151 (421)
408 smart00386 HAT HAT (Half-A-TPR 55.9 27 0.00059 18.1 3.6 24 89-112 2-25 (33)
409 PF14669 Asp_Glu_race_2: Putat 55.8 1.2E+02 0.0025 25.1 15.0 52 288-339 137-206 (233)
410 PF10366 Vps39_1: Vacuolar sor 55.4 81 0.0018 23.2 9.3 27 374-400 41-67 (108)
411 PF12862 Apc5: Anaphase-promot 55.0 73 0.0016 22.6 6.8 52 85-136 9-69 (94)
412 PRK06645 DNA polymerase III su 54.9 1.9E+02 0.0042 28.3 11.2 87 53-143 189-292 (507)
413 PRK10564 maltose regulon perip 54.6 33 0.00071 30.4 5.4 38 179-216 259-296 (303)
414 COG0735 Fur Fe2+/Zn2+ uptake r 54.6 66 0.0014 25.2 6.7 61 97-157 9-69 (145)
415 PF04097 Nic96: Nup93/Nic96; 54.3 2.5E+02 0.0054 28.5 20.8 45 111-156 114-158 (613)
416 KOG2471 TPR repeat-containing 53.7 2.1E+02 0.0047 27.5 13.6 115 292-420 249-382 (696)
417 PHA03100 ankyrin repeat protei 53.1 2.2E+02 0.0048 27.5 12.1 246 79-348 37-310 (480)
418 COG5108 RPO41 Mitochondrial DN 53.1 1.2E+02 0.0025 30.4 9.1 92 112-205 32-131 (1117)
419 COG2909 MalT ATP-dependent tra 52.8 2.9E+02 0.0064 28.8 24.4 223 117-339 424-684 (894)
420 PF11663 Toxin_YhaV: Toxin wit 52.1 16 0.00035 27.9 2.7 31 189-221 107-137 (140)
421 KOG2581 26S proteasome regulat 51.7 2.1E+02 0.0045 26.8 15.4 118 225-343 139-276 (493)
422 PF04762 IKI3: IKI3 family; I 51.1 3.5E+02 0.0075 29.2 15.2 198 148-398 699-927 (928)
423 KOG0890 Protein kinase of the 51.1 4.9E+02 0.011 30.9 26.9 151 79-236 1388-1542(2382)
424 PF11817 Foie-gras_1: Foie gra 50.9 80 0.0017 27.4 7.4 19 81-99 17-35 (247)
425 PF09868 DUF2095: Uncharacteri 50.6 66 0.0014 23.7 5.4 37 80-116 67-103 (128)
426 PF09454 Vps23_core: Vps23 cor 50.5 70 0.0015 21.0 5.6 51 370-421 6-56 (65)
427 PF11663 Toxin_YhaV: Toxin wit 50.5 19 0.00041 27.5 2.9 22 262-283 109-130 (140)
428 KOG2396 HAT (Half-A-TPR) repea 50.2 2.5E+02 0.0054 27.2 18.9 90 251-341 463-557 (568)
429 KOG2659 LisH motif-containing 50.1 1.6E+02 0.0035 25.0 9.5 97 70-168 22-128 (228)
430 PRK13342 recombination factor 50.0 2.3E+02 0.0051 26.9 18.3 20 226-245 244-263 (413)
431 PF11838 ERAP1_C: ERAP1-like C 49.8 2E+02 0.0043 26.0 13.2 86 120-207 142-231 (324)
432 smart00544 MA3 Domain in DAP-5 49.8 1E+02 0.0022 22.6 9.6 76 376-453 6-83 (113)
433 PRK11619 lytic murein transgly 49.4 3.1E+02 0.0066 28.0 37.0 232 71-311 126-374 (644)
434 KOG4642 Chaperone-dependent E3 49.3 1.7E+02 0.0038 25.2 10.5 16 383-398 89-104 (284)
435 PRK12323 DNA polymerase III su 48.7 3.1E+02 0.0068 28.0 12.7 70 68-140 199-282 (700)
436 PF09477 Type_III_YscG: Bacter 48.7 1.1E+02 0.0023 22.6 9.8 88 121-215 19-106 (116)
437 PF02184 HAT: HAT (Half-A-TPR) 48.6 45 0.00097 18.2 3.4 25 387-413 2-26 (32)
438 smart00777 Mad3_BUB1_I Mad3/BU 47.9 1.2E+02 0.0026 23.0 7.7 74 330-431 49-123 (125)
439 PRK14963 DNA polymerase III su 47.7 2.9E+02 0.0062 27.2 11.4 87 52-142 176-275 (504)
440 PF06855 DUF1250: Protein of u 47.3 30 0.00066 20.7 2.9 40 61-101 3-42 (46)
441 PRK07994 DNA polymerase III su 46.6 3.2E+02 0.007 27.8 11.5 28 111-139 249-276 (647)
442 COG2178 Predicted RNA-binding 46.6 1.7E+02 0.0036 24.3 9.2 16 224-239 133-148 (204)
443 COG4003 Uncharacterized protei 46.2 84 0.0018 21.5 5.0 30 80-109 37-66 (98)
444 KOG0687 26S proteasome regulat 45.9 2.3E+02 0.005 25.7 14.5 115 286-421 107-230 (393)
445 COG0735 Fur Fe2+/Zn2+ uptake r 45.8 1.3E+02 0.0028 23.6 7.1 34 252-285 24-57 (145)
446 KOG2300 Uncharacterized conser 44.7 3E+02 0.0065 26.6 37.4 89 43-131 53-150 (629)
447 KOG4567 GTPase-activating prot 44.2 2.4E+02 0.0052 25.4 10.0 43 269-311 264-306 (370)
448 PF03745 DUF309: Domain of unk 43.8 87 0.0019 20.3 4.9 18 223-240 10-27 (62)
449 TIGR01503 MthylAspMut_E methyl 43.7 1.5E+02 0.0032 28.3 8.0 155 191-361 68-238 (480)
450 COG2178 Predicted RNA-binding 43.1 1.9E+02 0.0042 23.9 10.6 18 188-205 132-149 (204)
451 PF12926 MOZART2: Mitotic-spin 42.7 1.2E+02 0.0025 21.3 8.0 42 129-170 29-70 (88)
452 PRK10941 hypothetical protein; 42.7 2.4E+02 0.0052 24.9 10.3 78 146-223 184-262 (269)
453 KOG4521 Nuclear pore complex, 41.3 5.1E+02 0.011 28.3 16.1 118 146-270 986-1124(1480)
454 COG2231 Uncharacterized protei 41.1 1.5E+02 0.0033 24.7 6.8 16 35-50 67-82 (215)
455 PRK14956 DNA polymerase III su 41.1 3.5E+02 0.0076 26.4 10.9 101 230-351 184-285 (484)
456 PF05944 Phage_term_smal: Phag 40.6 1.4E+02 0.003 23.0 6.3 34 76-109 50-83 (132)
457 PF04090 RNA_pol_I_TF: RNA pol 40.5 1.7E+02 0.0037 24.4 7.2 63 74-136 41-104 (199)
458 KOG2659 LisH motif-containing 39.2 2.4E+02 0.0053 24.0 8.9 16 154-169 75-90 (228)
459 PF13877 RPAP3_C: Potential Mo 39.2 1.4E+02 0.003 21.1 6.6 9 118-126 75-83 (94)
460 COG5108 RPO41 Mitochondrial DN 39.1 2.8E+02 0.006 28.0 9.2 74 79-155 33-115 (1117)
461 PRK14960 DNA polymerase III su 38.9 4.5E+02 0.0097 27.0 11.4 84 55-142 181-278 (702)
462 COG5187 RPN7 26S proteasome re 38.8 2.9E+02 0.0062 24.7 13.8 105 172-276 110-220 (412)
463 COG0790 FOG: TPR repeat, SEL1 38.7 2.8E+02 0.0061 24.6 19.8 147 52-207 56-221 (292)
464 PF02847 MA3: MA3 domain; Int 38.6 1.6E+02 0.0034 21.6 8.2 20 151-170 10-29 (113)
465 PF11123 DNA_Packaging_2: DNA 38.6 1.2E+02 0.0026 20.3 5.1 33 89-121 12-44 (82)
466 PRK14970 DNA polymerase III su 38.3 2.6E+02 0.0056 26.0 9.2 84 54-141 170-267 (367)
467 PRK14953 DNA polymerase III su 38.1 4E+02 0.0086 26.1 11.4 75 66-143 192-280 (486)
468 PF10155 DUF2363: Uncharacteri 37.7 1.8E+02 0.004 22.1 13.3 61 51-119 3-63 (126)
469 PF11768 DUF3312: Protein of u 37.6 2.4E+02 0.0053 27.6 8.6 22 217-238 413-434 (545)
470 PRK09857 putative transposase; 37.6 3.1E+02 0.0066 24.7 9.7 61 183-244 212-272 (292)
471 PRK06305 DNA polymerase III su 37.3 3.4E+02 0.0075 26.2 9.9 72 67-141 195-280 (451)
472 PRK14965 DNA polymerase III su 36.9 4.5E+02 0.0098 26.4 12.4 72 67-141 193-278 (576)
473 PF02607 B12-binding_2: B12 bi 36.5 83 0.0018 21.2 4.3 39 383-421 12-50 (79)
474 KOG1463 26S proteasome regulat 36.1 3.4E+02 0.0075 24.8 11.5 23 377-399 133-155 (411)
475 cd00280 TRFH Telomeric Repeat 36.0 2.5E+02 0.0054 23.1 11.9 19 323-341 120-138 (200)
476 PRK14950 DNA polymerase III su 35.7 4.8E+02 0.01 26.3 11.3 86 53-142 181-280 (585)
477 KOG2908 26S proteasome regulat 35.7 3.5E+02 0.0076 24.8 10.5 92 178-269 76-178 (380)
478 PF04190 DUF410: Protein of un 35.6 3.1E+02 0.0067 24.1 18.2 27 282-308 89-115 (260)
479 PF04034 DUF367: Domain of unk 35.5 1.9E+02 0.0041 22.0 6.1 60 372-434 66-126 (127)
480 PRK14971 DNA polymerase III su 35.4 3.3E+02 0.0072 27.6 9.8 74 66-142 194-281 (614)
481 PRK11639 zinc uptake transcrip 35.3 2E+02 0.0043 23.2 6.9 47 113-159 30-76 (169)
482 KOG0403 Neoplastic transformat 34.8 4.2E+02 0.009 25.4 22.8 58 287-344 513-573 (645)
483 KOG0687 26S proteasome regulat 34.7 3.6E+02 0.0077 24.6 20.1 131 208-342 66-209 (393)
484 PF09670 Cas_Cas02710: CRISPR- 34.7 3.9E+02 0.0085 25.1 12.0 54 186-240 140-197 (379)
485 KOG0292 Vesicle coat complex C 34.6 4.3E+02 0.0093 27.8 10.0 56 387-442 1062-1119(1202)
486 KOG0686 COP9 signalosome, subu 34.5 4E+02 0.0087 25.1 14.7 159 109-277 151-333 (466)
487 PRK11639 zinc uptake transcrip 34.4 2.5E+02 0.0054 22.7 7.7 58 203-262 17-74 (169)
488 KOG1166 Mitotic checkpoint ser 34.1 6.3E+02 0.014 27.3 11.6 77 382-458 88-165 (974)
489 KOG3677 RNA polymerase I-assoc 33.9 4.1E+02 0.009 25.1 11.0 58 113-170 240-299 (525)
490 PRK14949 DNA polymerase III su 33.4 6.3E+02 0.014 27.1 11.4 30 33-62 194-223 (944)
491 PRK05896 DNA polymerase III su 33.4 5.2E+02 0.011 26.1 11.7 85 55-143 182-280 (605)
492 PF14853 Fis1_TPR_C: Fis1 C-te 33.4 1.2E+02 0.0027 18.8 5.2 37 320-358 7-43 (53)
493 PRK14959 DNA polymerase III su 33.2 5.3E+02 0.012 26.2 11.0 82 54-139 181-276 (624)
494 PRK14700 recombination factor 32.9 3.7E+02 0.0079 24.2 17.0 45 182-226 128-175 (300)
495 KOG0292 Vesicle coat complex C 32.7 6.2E+02 0.013 26.8 26.8 45 373-417 1085-1130(1202)
496 cd07153 Fur_like Ferric uptake 32.5 1.2E+02 0.0025 22.4 4.9 46 378-423 6-51 (116)
497 KOG4567 GTPase-activating prot 32.4 3.2E+02 0.007 24.6 7.8 70 163-237 263-343 (370)
498 PF01316 Arg_repressor: Argini 32.4 1E+02 0.0022 20.6 3.9 45 6-50 5-49 (70)
499 PRK07003 DNA polymerase III su 32.3 6.1E+02 0.013 26.6 12.3 32 142-174 245-277 (830)
500 PRK06645 DNA polymerase III su 32.2 5E+02 0.011 25.6 10.4 36 141-177 256-292 (507)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.1e-60 Score=473.86 Aligned_cols=410 Identities=12% Similarity=0.176 Sum_probs=385.1
Q ss_pred CCHHHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269 37 LTHEFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA 114 (465)
Q Consensus 37 ~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 114 (465)
.+...+..++..+. .+.+.|+++|+++ ....-+.++...++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M-~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDM-EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 34445555555553 3788999999996 44333567888999999999999999999999999975 788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCH
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDL 193 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~ 193 (465)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV--KRMDDLGLSTYRIVIDWMCKRGKISQAYTML 271 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 271 (465)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .++.| |..+|+++|.+|++.|++++|.++|
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 57888 9999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP 347 (465)
Q Consensus 272 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 347 (465)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcccC------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048269 348 TMHTYIMLLQGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH 415 (465)
Q Consensus 348 ~~~~~~~ll~~~~~~~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 415 (465)
|..+|+.++.+|++.+. ..++.||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999988777 578999999999999999999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269 416 YYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKK 451 (465)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 451 (465)
+|++.|+++.|.+++++|.+.|+.|...+|..+-.+
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999988876543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.6e-60 Score=472.43 Aligned_cols=417 Identities=15% Similarity=0.206 Sum_probs=383.6
Q ss_pred HHhhhhhCCCC-CCHHHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048269 26 LHSSLSSCNFN-LTHEFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR 102 (465)
Q Consensus 26 ~~~~l~~~~~~-~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 102 (465)
+...+...+.. ++.-....++..+. ...+.|+.+|+.+ .. ||..+|+.++.+|++.|+++.|.++|+.|.+
T Consensus 392 Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M--~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~ 465 (1060)
T PLN03218 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI--RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQE 465 (1060)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 55555555543 33333333343333 3678999999986 22 8999999999999999999999999999999
Q ss_pred CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhH
Q 048269 103 RRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAY 180 (465)
Q Consensus 103 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~ 180 (465)
.|+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .++.||..+|
T Consensus 466 ~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTY 545 (1060)
T PLN03218 466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 998 88999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269 181 GWLIKGYCDVGDLIEASKIWNLMTD--EGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM 258 (465)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 258 (465)
+.||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|+.|.+.++.| +..+|+.+|.+|
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay 624 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHH
Confidence 9999999999999999999999986 6899999999999999999999999999999999999999 999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHH
Q 048269 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREAT 334 (465)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~ 334 (465)
++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcccC------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269 335 QVFREMIKRGCEPTMHTYIMLLQGHLGKRG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG 402 (465)
Q Consensus 335 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (465)
++|++|.+.|+.||..+|+.++.+|++.+. ..++.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988777 68999999999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHhh----c-------------------cchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 048269 403 VEVPRFDYNKFLHYYSN----E-------------------EGVVMFEEVGKKLREVGLADLADIFQRYG 449 (465)
Q Consensus 403 ~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 449 (465)
+.||..+|+.++..|.+ . +..+.|..++++|.+.|+.|...+|....
T Consensus 785 i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999876542 1 12367999999999999999999997664
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-57 Score=454.13 Aligned_cols=413 Identities=15% Similarity=0.187 Sum_probs=379.6
Q ss_pred HHhhhhhC-CCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048269 26 LHSSLSSC-NFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR 102 (465)
Q Consensus 26 ~~~~l~~~-~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 102 (465)
+...+... +..++..++..++..+.. +.+.+.+++..+ .+.|+.||..+||.++..|++.|++++|.++|++|.+
T Consensus 109 ~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m--~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~ 186 (697)
T PLN03081 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV--ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186 (697)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 44444443 467888888888887766 677899999884 6668999999999999999999999999999999975
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHH
Q 048269 103 RRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYG 181 (465)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~ 181 (465)
++..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+. .|+.||..+|+
T Consensus 187 ---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 187 ---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred ---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 46668999999999999999999999999999999999999999999999999999999999988 88999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR 261 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 261 (465)
.||.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.| |..||+.++.+|++.
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~ 338 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Confidence 999999999999999999999964 699999999999999999999999999999999999 999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
|+++.|.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHhhcccC-------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 048269 342 KRGCEPTMHTYIMLLQGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF 408 (465)
Q Consensus 342 ~~~~~p~~~~~~~ll~~~~~~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 408 (465)
+.|+.||..||+.++.+|+..+. ..++.|+..+|++++.+|++.|++++|.+++++| ++.|+..
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN 495 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence 99999999999999999987665 4689999999999999999999999999999877 4889999
Q ss_pred hHHHHHHHHhhccchHHHHHHHHHHHHcC------CCCchhHHHHHHHH
Q 048269 409 DYNKFLHYYSNEEGVVMFEEVGKKLREVG------LADLADIFQRYGKK 451 (465)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~~~~~ 451 (465)
+|+.|+.+|...|+++.+..+++++.+.+ |..+.++|...|++
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 99999999999999999999999998764 44555666655543
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.5e-57 Score=459.70 Aligned_cols=422 Identities=16% Similarity=0.117 Sum_probs=390.4
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR 103 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 103 (465)
+...+...|..|+..++..+++.+.. +.+.+.+++..+ ...|+.||..+||.++.+|++.|++++|.++|++|.+.
T Consensus 174 ~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV--VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH--HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 55556667888898889888888776 567788888885 56689999999999999999999999999999999764
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHH
Q 048269 104 RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGW 182 (465)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~ 182 (465)
+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..|. .|+.||..+|+.
T Consensus 252 ---d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 252 ---DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred ---CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 5568999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.| |..||+.++.+|++.|
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g 403 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccc
Confidence 9999999999999999999996 4789999999999999999999999999999999999 9999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+++|++|..
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHhhcccC------------C------------------------------CCCCCchHHHHHHHH
Q 048269 343 RGCEPTMHTYIMLLQGHLGKRG------------R------------------------------KGPDPLVNFDTIFVG 380 (465)
Q Consensus 343 ~~~~p~~~~~~~ll~~~~~~~~------------~------------------------------~~~~~~~~~~~~li~ 380 (465)
++.||..||..++.+|++.+. + ....+|..+||+||.
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~ 562 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLT 562 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHH
Confidence 699999999999998876543 1 112789999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHH-HcCCCCchhHHHHHHHHHhHHhhh
Q 048269 381 GLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLR-EVGLADLADIFQRYGKKMATRERR 458 (465)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 458 (465)
+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++++.|. +.|+.|...+|..........++-
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999 679999988888777766665543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-55 Score=449.92 Aligned_cols=424 Identities=15% Similarity=0.205 Sum_probs=342.4
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR 103 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 103 (465)
+...+.+.|..++...++.++..+.+ +.+.|..+|+.+ . .||..+||.+|.+|++.|++++|+++|++|.+.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM--P----RRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC--C----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 55566667778888888888877665 778899999886 2 368888888888888888888888888888888
Q ss_pred CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269 104 RL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182 (465)
Q Consensus 104 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (465)
|+ |+..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||.++.+|++.|++++|.++|++|. .||..+|++
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~ 359 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTA 359 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHH
Confidence 87 78888888888888888888888888888888888888888888888888888888888888886 567778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|..| +..+|+.|+.+|++.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcC
Confidence 888888888888888888888777777777777777777766666666666666666666655 5555555555555555
Q ss_pred ChHHHHHHHH-------------------------------HHHHCCCCCCHHHH-------------------------
Q 048269 263 KISQAYTMLE-------------------------------EMFKRGIEADNLTL------------------------- 286 (465)
Q Consensus 263 ~~~~a~~~~~-------------------------------~m~~~~~~~~~~~~------------------------- 286 (465)
++++|.++|+ +|.. ++.||..||
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 5555554444 4432 355666555
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048269 287 ----------SSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356 (465)
Q Consensus 287 ----------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 356 (465)
++|+.+|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 45556778888888999999888 8999999999999999999999999999999999999999999999
Q ss_pred HHhhcccC-------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269 357 QGHLGKRG-------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV 423 (465)
Q Consensus 357 ~~~~~~~~-------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (465)
.+|...+. ..++.|+..+|++++.+|++.|++++|.+++++|. +.||..+|++|+.+|...|+.
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCh
Confidence 99976655 57899999999999999999999999999999994 799999999999999999999
Q ss_pred HHHHHHHHHHHHcC------CCCchhHHHHHHH---HHhHHhhhhhccCC
Q 048269 424 VMFEEVGKKLREVG------LADLADIFQRYGK---KMATRERRRNRAIE 464 (465)
Q Consensus 424 ~~a~~~~~~~~~~g------~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 464 (465)
+.++...+++.+.. +..++++|...|+ ..+.|+.+++..++
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 99999999998874 6667788876664 55666666655443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-54 Score=430.00 Aligned_cols=399 Identities=14% Similarity=0.147 Sum_probs=378.0
Q ss_pred hHHhhhhhCCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 048269 25 RLHSSLSSCNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR 102 (465)
Q Consensus 25 ~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 102 (465)
.+...+...|..++...++.++..+.. +.+.|.++|+.+ . .||..+||.++.+|++.|++++|+++|++|.+
T Consensus 144 ~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m--~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM--P----ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC--C----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 477777888999999999999988776 789999999996 2 37999999999999999999999999999999
Q ss_pred CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHH
Q 048269 103 RRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYG 181 (465)
Q Consensus 103 ~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 181 (465)
.|+ |+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|. ++|..+|+
T Consensus 218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n 294 (697)
T PLN03081 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWN 294 (697)
T ss_pred hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHH
Confidence 998 88999999999999999999999999999999999999999999999999999999999999997 67999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR 261 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 261 (465)
+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.| +..+|++|+.+|++.
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 048269 262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVF 337 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~ 337 (465)
|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+ ||..||++++.+|++.|.+++|.++|
T Consensus 374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999964 6899999999999999999999999999987 99999999999999999999999999
Q ss_pred HHHHH-cCCCCCHHHHHHHHHHhhcccC---------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 048269 338 REMIK-RGCEPTMHTYIMLLQGHLGKRG---------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP- 406 (465)
Q Consensus 338 ~~m~~-~~~~p~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~- 406 (465)
+.|.+ .|+.|+..+|+.++..+.+.+. ..++.|+..+|++|+.+|...|+++.|..+++++.+ +.|+
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCC
Confidence 99986 5999999999999999987776 677899999999999999999999999999999974 5675
Q ss_pred HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCC
Q 048269 407 RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLA 439 (465)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 439 (465)
..+|..|++.|.+.|++++|.+++++|.+.|+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 569999999999999999999999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3.1e-25 Score=231.36 Aligned_cols=398 Identities=10% Similarity=-0.018 Sum_probs=291.2
Q ss_pred CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269 49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
..++++.|...|+.++...++ +...+..+...+...|++++|.+.++.+.+.++.+..++..+...+.+.|+.++|.
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 334778888888887544443 66777778888888888888888888888777767777888888888888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
..++.+.+.+ +.+...+..++..+...|++++|..+++++....+.+..+|..+..++...|++++|...|+.+.+..
T Consensus 554 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 554 AWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred HHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 8888887654 55666777788888888888888888888875556777788888888888888888888888887653
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269 209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS 288 (465)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (465)
+.+...+..+..++.+.|++++|.++|+.+... .|.+..++..++..+...|++++|.++++.+.+.+ +.+...+..
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 708 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFEL 708 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHH
Confidence 335667777888888888888888888887754 45467777888888888888888888888877764 345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC--
Q 048269 289 IIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-- 364 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-- 364 (465)
+...+...|++++|...|+.+.. |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...+.
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 77778888888888888887766 666667777777888888888888888777642 3345555555555544444
Q ss_pred ---------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 365 ---------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 365 ---------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
....+.++..++.+...+...|+ ++|+.+++++.+. .| +..++..+...+...|++++|..+++++.
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334566777778888888888 7788888887763 34 34466777777778888888888888888
Q ss_pred HcCCCCchhHHHHHHHHHhHHhhhh
Q 048269 435 EVGLADLADIFQRYGKKMATRERRR 459 (465)
Q Consensus 435 ~~g~~~~~~~~~~~~~~~~~~~~~~ 459 (465)
+.+.. ...++..++......++..
T Consensus 865 ~~~~~-~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 865 NIAPE-AAAIRYHLALALLATGRKA 888 (899)
T ss_pred hhCCC-ChHHHHHHHHHHHHcCCHH
Confidence 77644 6667766776655554443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=2e-24 Score=225.38 Aligned_cols=374 Identities=14% Similarity=0.030 Sum_probs=260.4
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++++.|+.+++.+.... +.++.+++.+...+...|++++|.+.|+++.+.++.+...+..+...+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ---PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36677777777763322 336677777777777777777777777777776666666677777777777777777777
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++....+.+...+..+...|...|++++|..+++.+.+.. +.
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 77777654 45666777777777777777777777777764445566677777777777777777777777776543 44
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII 290 (465)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 290 (465)
+..+|..+..++.+.|++++|.+.|+.+.+. .|.+...+..+..++...|++++|..+++++.+.. +.+..++..+.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 5667777777777777777777777777654 34356667777777777777777777777777653 23466777777
Q ss_pred HHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC---
Q 048269 291 YGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG--- 364 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--- 364 (465)
..+...|++++|..+++.+.. .+...+..+...+...|++++|.+.|+.+... .|+..++..+...+...+.
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence 777777777777777777766 45556666777777777777777777777754 3444555555555544443
Q ss_pred --------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 365 --------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 365 --------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
....+.+...+..+...|...|++++|.++|+++.+.. +.+..++..+...+.+.|+ .+|..++++..+.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 22334456677777777777777777777777777642 3345577777777777777 6677777777765
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.6e-22 Score=189.81 Aligned_cols=301 Identities=15% Similarity=0.093 Sum_probs=245.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcCC
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS---LEMLNKVVKTLCQRK 157 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~ 157 (465)
...+...|++++|+..|+++.+.++.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44567788999999999999988877778888899999999999999999998887532221 246778888999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 048269 158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS----IDVVDKMIETFFKINKDDEAMK 233 (465)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~ 233 (465)
++++|..+|+++....+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998854566788899999999999999999999999987653322 2245667778889999999999
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--
Q 048269 234 VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-- 311 (465)
Q Consensus 234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 311 (465)
.|+++.+. .|.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998865 34356678888899999999999999999998764333356678888999999999999999999877
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh---cCCH
Q 048269 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK---AGKS 388 (465)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~ 388 (465)
|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+ .. .|+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~-----------------------~~~~~~g~~ 334 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH-----------------------LAEAEEGRA 334 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh-----------------------hhccCCccc
Confidence 77777788888999999999999999998865 68888887776665 32 5688
Q ss_pred HHHHHHHHHHHhCCCCCCHh
Q 048269 389 LDAAKYVERVMNRGVEVPRF 408 (465)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~ 408 (465)
+++..++++|.+.++.|++.
T Consensus 335 ~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 335 KESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhHHHHHHHHHHHHHhCCCC
Confidence 99999999999877777665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=8.3e-22 Score=185.01 Aligned_cols=315 Identities=12% Similarity=0.079 Sum_probs=262.3
Q ss_pred hhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 048269 28 SSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN 107 (465)
Q Consensus 28 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 107 (465)
...++....++...+..+.....++++.|+..|..++...+. +..++..+...+.+.|++++|..+++.+......+
T Consensus 26 ~~~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 102 (389)
T PRK11788 26 QDQQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT 102 (389)
T ss_pred hhhhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC
Confidence 345556667777778888777777899999999998555443 77899999999999999999999999998764322
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC-----HH
Q 048269 108 ----DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN-----EI 178 (465)
Q Consensus 108 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~ 178 (465)
..++..++..+.+.|++++|+.+|+.+.+.. +.+..+++.++.++.+.|++++|.+.++.+....+.+ ..
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 181 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAH 181 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 2467888999999999999999999998764 5678889999999999999999999999998322221 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM 258 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 258 (465)
.+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+++...+... ...+++.++.+|
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~ 259 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHH
Confidence 45677888899999999999999998764 3356688889999999999999999999998763222 245788999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHh---cCCHHHH
Q 048269 259 CKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLR---LRRAREA 333 (465)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~~a 333 (465)
...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+ |+...++.++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhH
Confidence 9999999999999999886 45666778899999999999999999998877 899899988887775 5689999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 048269 334 TQVFREMIKRGCEPTMH 350 (465)
Q Consensus 334 ~~~~~~m~~~~~~p~~~ 350 (465)
+.++++|.+.++.|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999988777765
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.1e-18 Score=171.87 Aligned_cols=330 Identities=11% Similarity=0.058 Sum_probs=172.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
-..-++..+.+.|++++|..+++......+-+...+..++.+....|++++|+..|+.+.+.. +.+...+..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 334445555566666666666666655555444555555555555666666666666665543 3344555555556666
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (465)
.|++++|+..+++...-.+.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|.+.+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 666666666666655333444555555666666666666666666555443211 12222222 2345556666666666
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhcC
Q 048269 236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE----AYKVVEEIEK 311 (465)
Q Consensus 236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~ 311 (465)
+.+......+ +...+..+..++...|++++|...++++.+... .+...+..+...+...|++++ |...|++...
T Consensus 201 ~~~l~~~~~~-~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALE-RQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6554432111 223333344555566666666666666555432 234455555556666666553 5555555554
Q ss_pred ---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCH
Q 048269 312 ---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKS 388 (465)
Q Consensus 312 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 388 (465)
.+...+..+...+...|++++|...+++..+. .|+..... ..+...|.+.|++
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~----------------------~~La~~l~~~G~~ 334 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR----------------------AMYARALRQVGQY 334 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH----------------------HHHHHHHHHCCCH
Confidence 23345555555566666666666666665543 33322211 1123334556666
Q ss_pred HHHHHHHHHHHhCCCCCCHhh-HHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 389 LDAAKYVERVMNRGVEVPRFD-YNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
++|++.++++... .|+... +..+..++...|+.++|...+++..+.
T Consensus 335 ~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 335 TAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6666666665542 343322 222344455556666666666665555
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=8.7e-20 Score=164.80 Aligned_cols=353 Identities=11% Similarity=0.058 Sum_probs=199.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN-KVVK 151 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~ 151 (465)
-.++|..+..++-..|++++|+..++.+.+..+.....|..+..++...|+.+.|.+.|.+..+. .|+..... .+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 45566666666666666666666666666665555556666666666666666666666665553 34433322 2333
Q ss_pred HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHH
Q 048269 152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 230 (465)
.+...|++++|...|.+.....+--.+.|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 3344555666655555554322333455555555555556666666555555543 232 3445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 309 (465)
|...|...... .|.....+..+...|...|+++-|+..|++..+. .|+ +..|+.|..++...|++.+|...+.+.
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 55555554432 3334444555555555555555555555555443 222 344555555555555555555555555
Q ss_pred cC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCCc-hHH
Q 048269 310 EK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDPL-VNF 374 (465)
Q Consensus 310 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~-~~~ 374 (465)
.. ......+.|...|...|.+++|..+|.... .+.|.-..-..-+....+..| ...+.|+ ...
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 44 223344455555555555555555555444 233432222222222222222 2233333 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
|+.+...|-..|+.+.|++.+.+.+. +.|.-. ..+.|...|..+|+..+|..-++..++..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 77788888999999999999999886 567644 78888999999999999999999988774
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=7.3e-18 Score=166.16 Aligned_cols=319 Identities=10% Similarity=0.025 Sum_probs=257.2
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++++.|+.++..++...+. +...+..++.+....|++++|...++++.+..+.+...+..+...+.+.|++++|+..
T Consensus 56 g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred CCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3788899999887555554 6667777778888899999999999999999888888899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
|+.+.+.. +.+...+..+..++...|+.++|...++.+....+.+...+..+ ..+...|++++|...++.+.+..-.+
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 99998864 55677888899999999999999999998863334444455444 34788899999999999987764334
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHH
Q 048269 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ----AYTMLEEMFKRGIEADNLTL 286 (465)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~ 286 (465)
+...+..+..++.+.|++++|.+.++..... .|.+...+..+...+...|++++ |...|++..+... .+...+
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~ 287 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIV 287 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHH
Confidence 4555566678888999999999999999876 45577888889999999999985 7999999887643 367788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 048269 287 SSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR 363 (465)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 363 (465)
..+...+...|++++|...+++... .+...+..+..++.+.|++++|...|+++.+. .|+...+...
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~-------- 357 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY-------- 357 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH--------
Confidence 8999999999999999999999887 44556777888899999999999999998864 4554332221
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048269 364 GRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR 401 (465)
Q Consensus 364 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (465)
+..++...|++++|...|++..+.
T Consensus 358 --------------~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 --------------AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred --------------HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 223458899999999999998873
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.3e-17 Score=164.96 Aligned_cols=358 Identities=11% Similarity=0.001 Sum_probs=273.3
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
.+++.|+..|+.++.. .|+...|..+..+|.+.|++++|++.++...+.++.+..++..+..++...|++++|+..
T Consensus 141 ~~~~~Ai~~y~~al~~----~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC----KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3789999999998543 357788999999999999999999999999998887888999999999999999999876
Q ss_pred HHHhhhCCCC-----------------------------CCHHHHHHH------------------------------HH
Q 048269 131 FHIMNDCGCE-----------------------------YSLEMLNKV------------------------------VK 151 (465)
Q Consensus 131 ~~~~~~~~~~-----------------------------~~~~~~~~l------------------------------l~ 151 (465)
|......+-. ++...+..+ +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 6544322100 000000000 00
Q ss_pred HH------HcCCCHHHHHHHHHHhh-cC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHH
Q 048269 152 TL------CQRKLVVEAKYLILKLS-EW--IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIET 221 (465)
Q Consensus 152 ~~------~~~~~~~~a~~~~~~m~-~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~ 221 (465)
.. ...+++++|.+.|++.. .+ .+.+...+..+...+...|++++|+..|+...+. .|+ ...|..+...
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~ 374 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 00 11256888889998877 22 2345567888888888999999999999998876 344 6678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269 222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 301 (465)
+...|++++|...|+...+. .|.+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++
T Consensus 375 ~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999998765 555788899999999999999999999999887642 356677788888999999999
Q ss_pred HHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcccCCCCCCCchHHHHH
Q 048269 302 AYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM-HTYIMLLQGHLGKRGRKGPDPLVNFDTI 377 (465)
Q Consensus 302 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 377 (465)
|...|++... .+...++.+...+...|++++|++.|++.++. .|+. .++..+... ++.
T Consensus 452 A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l----------------~~~ 513 (615)
T TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPL----------------INK 513 (615)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHH----------------HHH
Confidence 9999998876 45678888889999999999999999998854 3321 111111100 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
.+..+...|++++|.+++++.... .|+. ..+..+...+...|++++|...+++..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 222344579999999999998874 4544 478889999999999999999999998774
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=8.4e-17 Score=169.48 Aligned_cols=375 Identities=11% Similarity=0.014 Sum_probs=239.7
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh--HHH------------HHHH
Q 048269 50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND--KTF------------KIAL 115 (465)
Q Consensus 50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~------------~~l~ 115 (465)
..+++.|...|+.++...+. +...+..+..++.+.|++++|+..|++..+.++.+. ..+ ....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 34788999999998666555 789999999999999999999999999988765321 112 1224
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269 116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (465)
..+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++.....+.+...+..+...|. .++.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 56778899999999999998864 4567778888999999999999999999988444555666665655553 234555
Q ss_pred HHHHHHHHHHCCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHH
Q 048269 196 ASKIWNLMTDEGFE--------PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQA 267 (465)
Q Consensus 196 a~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 267 (465)
|..+++.+....-. .....+..+...+...|++++|.+.|++..+. .|.+...+..+...|.+.|++++|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55555443221000 00112333444555556666666666655543 333444555555555666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHH
Q 048269 268 YTMLEEMFKRGIEADNLTLS--------------------------------------------SIIYGLLARGRLREAY 303 (465)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~--------------------------------------------~li~~~~~~~~~~~a~ 303 (465)
...++++.+.... +...+. .+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666555543211 222221 2233455556666666
Q ss_pred HHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcccC-----------CCCCCCc
Q 048269 304 KVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP-TMHTYIMLLQGHLGKRG-----------RKGPDPL 371 (465)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~-----------~~~~~~~ 371 (465)
.+++.- ..+...+..+...+.+.|++++|++.|++.++. .| +......+...+...+. ....+.+
T Consensus 594 ~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 594 ALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 665521 134445566777778888888888888888764 34 34555555555544444 1112234
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 372 VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV--EV---PRFDYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|...+++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666777788888888888888888876321 11 123556667777888888888888888764
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.8e-16 Score=165.51 Aligned_cols=349 Identities=9% Similarity=-0.005 Sum_probs=200.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHH------------HHH
Q 048269 83 IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY-SLEML------------NKV 149 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l 149 (465)
.+...|++++|+..|++..+.++.+..++..+...+.+.|++++|+..|++..+..... ....+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34445666666666666655555555555566666666666666666666555432111 11111 111
Q ss_pred HHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH
Q 048269 150 VKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229 (465)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 229 (465)
...+.+.|++++|+..|++.....+.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 2334455666666666666553334445555555666666666666666666665542 123344444444443 34556
Q ss_pred HHHHHHHHHHHcCCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048269 230 EAMKVFQMMRVKRMD-------DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302 (465)
Q Consensus 230 ~A~~~~~~m~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 302 (465)
+|..+++.+...... ......+..+...+...|++++|.+.|++..+.... +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 665555443221000 001235677888999999999999999999887432 567788899999999999999
Q ss_pred HHHHHHhcC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------
Q 048269 303 YKVVEEIEK--P-DISLYHGLIKGLLRLRRAREATQVFREMIKRGC---------------------------------- 345 (465)
Q Consensus 303 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------------------------------- 345 (465)
...++++.+ | +...+..+...+...++.++|+..++.+.....
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999866 3 344444444444556666666666655432111
Q ss_pred -----CCCHHHHHHHHHHhhcccC-----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh
Q 048269 346 -----EPTMHTYIMLLQGHLGKRG-----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RF 408 (465)
Q Consensus 346 -----~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 408 (465)
+.+...+..+-..+...+. ...-+.++..+..++..|...|++++|++.+++..+ ..|+ ..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChH
Confidence 1122222222222222222 112233456677777777777777777777776664 3343 33
Q ss_pred hHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 409 DYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
++..+..++...|++++|.++++++.+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 5566666777777888888888777765
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=2.3e-16 Score=136.89 Aligned_cols=338 Identities=14% Similarity=0.131 Sum_probs=256.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHH
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLI 184 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li 184 (465)
.++.++.++|.++++....+.|.++|++..+...+.+..+||.+|.+-+-.. -.+++.+|. ..+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 4678999999999999999999999999988878999999999997654332 278889998 88899999999999
Q ss_pred HHHHhcCCHHH----HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cC---CCCCCcchHH
Q 048269 185 KGYCDVGDLIE----ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE-AMKVFQMMRV----KR---MDDLGLSTYR 252 (465)
Q Consensus 185 ~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~---~~~~~~~~~~ 252 (465)
++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +. +.|.+...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998865 56788899999999999999999999999888754 5555555443 22 3444566788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHH
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRG----IEAD---NLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLI 321 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li 321 (465)
..+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...++.|.. |+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 88899999999999998877665321 2232 23356677778888889999999999887 8889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-------------------------------CCCCCC
Q 048269 322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------------------------------RKGPDP 370 (465)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------------------------------~~~~~~ 370 (465)
++....|.++-.-++|..++..|-.-+...-..++.-+++... ......
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 9999999999999999999887754444444444444433331 223344
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHH---HHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269 371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV-EVPRFDYN---KFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ 446 (465)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 446 (465)
.....+...-.+.+.|..++|.++|.-+...+- .|-....+ -+++......+...|...++-|...+......+-.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~ 600 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQ 600 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHH
Confidence 555677777888899999999999998866442 23333344 56666777888999999999998877655554444
Q ss_pred H
Q 048269 447 R 447 (465)
Q Consensus 447 ~ 447 (465)
.
T Consensus 601 R 601 (625)
T KOG4422|consen 601 R 601 (625)
T ss_pred H
Confidence 3
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=6.5e-18 Score=152.84 Aligned_cols=372 Identities=11% Similarity=0.022 Sum_probs=291.7
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
++++|++.-..+-..++. +....-.+-..+.+..+.+....--....+.++.-..+|..+...+-..|++++|+..|
T Consensus 63 d~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 63 DYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred CHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 888998887776333333 33333444556777778887777666667777667789999999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 211 (465)
+.+.+.. +-....|..+..++...|+.+.|.+.|.+...-.+......+.+....-..|.+++|...|.+..+. .|.
T Consensus 140 ~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~ 216 (966)
T KOG4626|consen 140 RAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPC 216 (966)
T ss_pred HHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCc
Confidence 9999875 4568889999999999999999999999887332333344445555666789999999999998876 343
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 048269 212 -IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-DNLTLSSI 289 (465)
Q Consensus 212 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l 289 (465)
...|+.|...+...|+...|++.|++..+. .|.-...|-.|...|...+.++.|...|.+.... .| ....+..+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNl 292 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNL 292 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccce
Confidence 567999999999999999999999998855 6645678999999999999999999999988765 34 46678888
Q ss_pred HHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcccC-
Q 048269 290 IYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM-HTYIMLLQGHLGKRG- 364 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~- 364 (465)
...|...|.++.|+..+++..+ |+ ...|+.|..++-..|++.+|.+.|.+.+.. .|+. ...+.+-..+...+.
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccc
Confidence 8889999999999999999988 44 468999999999999999999999999854 4542 333444443322222
Q ss_pred ---------CCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHH
Q 048269 365 ---------RKGPDPL-VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKL 433 (465)
Q Consensus 365 ---------~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (465)
...+.|. ...++.|...|-..|++++|+..+++.+. ++|+.. .|+.+...|...|+.+.|.+.+.+.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 2222333 34677888888889999999999988885 788765 8888888888889999999988888
Q ss_pred HHcC
Q 048269 434 REVG 437 (465)
Q Consensus 434 ~~~g 437 (465)
+..+
T Consensus 449 I~~n 452 (966)
T KOG4626|consen 449 IQIN 452 (966)
T ss_pred HhcC
Confidence 8764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.9e-16 Score=157.25 Aligned_cols=414 Identities=10% Similarity=0.026 Sum_probs=259.0
Q ss_pred CCChhHHHHHHHHHhhcCCCCchhHHhhhhhCC-CCCCHH---HHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhH
Q 048269 2 PVDPGHLVRVCTILYQQQYSPESRLHSSLSSCN-FNLTHE---FFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITF 77 (465)
Q Consensus 2 p~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~---~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~ 77 (465)
|-+|..+.....|..-.+ ....+........ ..+.+. .....+..-..+++.|..+|+.++...|+ +...+
T Consensus 12 ~~~~~~~~d~~~ia~~~g--~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWAG--QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ---NDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Confidence 456666666666666665 2222222222222 122222 22222223334677777777777555444 56667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
..+...+...|++++|+..++++.+..+.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 77777777778888888888777777665666 7777777777788888888887777754 345555566666777777
Q ss_pred CHHHHHHHHHHhhcCCCCCH------HhHHHHHHHHHh-----cCCH---HHHHHHHHHHHHC-CCCCcHH-HH----HH
Q 048269 158 LVVEAKYLILKLSEWIKPNE------IAYGWLIKGYCD-----VGDL---IEASKIWNLMTDE-GFEPSID-VV----DK 217 (465)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-g~~~~~~-~~----~~ 217 (465)
..+.|++.++.... .|+. .....++..+.. .+++ ++|+..++.+.+. ...|+.. .+ ..
T Consensus 165 ~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 165 LSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred ChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 77777777766552 2221 111222222221 1223 5677777777653 1222221 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 048269 218 MIETFFKINKDDEAMKVFQMMRVKRMD-DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNLTLSSIIYGL 293 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~ 293 (465)
.+.++...|++++|++.|+.+.+.+.. | + .....+..+|...|++++|...|+++.+..... .......+..++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P-~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIP-P-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCC-H-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 133445668888888888888766422 2 1 122224667888888888888888876543211 123455566677
Q ss_pred HhcCCHHHHHHHHHHhcC--C-------------C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048269 294 LARGRLREAYKVVEEIEK--P-------------D---ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIML 355 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~--~-------------~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 355 (465)
...|++++|...++.+.. | + ...+..+...+...|+.++|+++++++... .|+..
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~----- 393 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQ----- 393 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-----
Confidence 888888888888887765 2 1 123445566777788888888888888754 45432
Q ss_pred HHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 356 LQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 356 l~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
..+..+...+...|++++|++.+++... +.|+. ..+......+...|++++|+.++++++
T Consensus 394 -----------------~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 394 -----------------GLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred -----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2334456667899999999999999997 45764 477777778889999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHhH
Q 048269 435 EVGLADLADIFQRYGKKMAT 454 (465)
Q Consensus 435 ~~g~~~~~~~~~~~~~~~~~ 454 (465)
+. .|.......+.+....
T Consensus 455 ~~--~Pd~~~~~~~~~~~~~ 472 (765)
T PRK10049 455 AR--EPQDPGVQRLARARDV 472 (765)
T ss_pred Hh--CCCCHHHHHHHHHHHh
Confidence 85 5566666666655443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.4e-15 Score=150.57 Aligned_cols=350 Identities=11% Similarity=-0.018 Sum_probs=250.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
.+......+.+.|++++|+..|++..+..+ +...|..+..+|.+.|++++|++.++...+.. +.+...+..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 355667788999999999999999987654 56788899999999999999999999999865 5567788899999999
Q ss_pred CCCHHHHHHHHHHhh--cCCC----------------------------CCHHhHHHH----------------------
Q 048269 156 RKLVVEAKYLILKLS--EWIK----------------------------PNEIAYGWL---------------------- 183 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~--~~~~----------------------------~~~~~~~~l---------------------- 183 (465)
.|++++|+..|.... .+.. ++...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999987665443 1110 100000000
Q ss_pred --------HHHH------HhcCCHHHHHHHHHHHHHCC-CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048269 184 --------IKGY------CDVGDLIEASKIWNLMTDEG-FEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247 (465)
Q Consensus 184 --------i~~~------~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 247 (465)
+..+ ...+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|+..... .|..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 0000 11256778888888888754 223 4456777788888889999999998888765 4535
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHH
Q 048269 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGL 324 (465)
Q Consensus 248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 324 (465)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+ .+...+..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 6678888888888889999999888887763 23567788888888888999999998888877 3456666777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048269 325 LRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVE 404 (465)
Q Consensus 325 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 404 (465)
.+.|++++|+..|++.++. .|+. +..|+.+...+...|++++|++.|++.... .
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~ 497 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEA----------------------PDVYNYYGELLLDQNKFDEAIEKFDTAIEL--E 497 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCC----------------------hHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C
Confidence 8888999999998888753 3432 233444566679999999999999999873 3
Q ss_pred CCH-h-------hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHHhh
Q 048269 405 VPR-F-------DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRER 457 (465)
Q Consensus 405 p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 457 (465)
|+. . .++..+..+...|++++|..++++..+.+.. ....+..+|+.....++
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGD 557 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccC
Confidence 321 1 1222222334469999999999999887522 22345555655444433
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=5.3e-15 Score=149.15 Aligned_cols=365 Identities=9% Similarity=-0.025 Sum_probs=273.2
Q ss_pred CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269 49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
..++.+.|+.+|..+.... ..+...+..+..++.+.|++++|.++|++..+..+.+...+..++..+...|++++|+
T Consensus 27 ~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3357889999999972223 3467789999999999999999999999999988888888889999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
..++++.+.. +.+.. +..+..++...|+.++|+..++++....+.+...+..+..++...|..+.|+..++....
T Consensus 104 ~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--- 178 (765)
T PRK10049 104 VKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL--- 178 (765)
T ss_pred HHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---
Confidence 9999998864 55666 888889999999999999999999966677788888888899999999999999987654
Q ss_pred CCcH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCCcchHH----HHHHHHHhcCChHHHHH
Q 048269 209 EPSI------DVVDKMIETFF-----KINKD---DEAMKVFQMMRVK-RMDDLGLSTYR----IVIDWMCKRGKISQAYT 269 (465)
Q Consensus 209 ~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~~~~~----~li~~~~~~~~~~~a~~ 269 (465)
.|+. .....++.... ..+++ ++|++.++.+.+. ...|.+...+. ..+.++...|++++|..
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2331 11222333322 22334 7788889888854 22231111111 11345567799999999
Q ss_pred HHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 270 MLEEMFKRGIE-ADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-----ISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 270 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
.|+.+.+.+.. |+. ....+..+|...|++++|...|+++.. |. ......+..++...|++++|..+++.+.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999987632 332 223357789999999999999999876 22 2345667778899999999999999998
Q ss_pred HcCCCCCHH-HHHHHHHHhhcccCCCCCCCch---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHH
Q 048269 342 KRGCEPTMH-TYIMLLQGHLGKRGRKGPDPLV---NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHY 416 (465)
Q Consensus 342 ~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~ 416 (465)
+. .|... .+. .....|+. ..+..+...+...|++++|+++++++... .| +...+..+...
T Consensus 338 ~~--~P~~~~~~~-----------~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 338 NN--SPPFLRLYG-----------SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred hc--CCceEeecC-----------CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 54 23211 000 00112221 23345666788999999999999999874 45 55688899999
Q ss_pred HhhccchHHHHHHHHHHHHcC
Q 048269 417 YSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~g 437 (465)
+...|+.++|++.+++..+..
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999875
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.5e-13 Score=139.13 Aligned_cols=85 Identities=6% Similarity=-0.053 Sum_probs=45.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE-VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
.+.|.+.|++++|++++.++.+.++.+......+...|.. .++ +.+..+++. .++.+...+..+...|.+.|+.
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCH
Confidence 4555555555555555555555555444444444445554 244 444444332 1224555555666666666666
Q ss_pred HHHHHHHHHhh
Q 048269 160 VEAKYLILKLS 170 (465)
Q Consensus 160 ~~a~~~~~~m~ 170 (465)
++|.+++.++.
T Consensus 264 ~~A~~~L~~~~ 274 (987)
T PRK09782 264 ARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhCc
Confidence 66666666665
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=8.4e-14 Score=138.15 Aligned_cols=391 Identities=10% Similarity=0.006 Sum_probs=223.7
Q ss_pred CHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHH
Q 048269 38 THEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMT 117 (465)
Q Consensus 38 ~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 117 (465)
.......++..-.++.+.|+..|..++...+... +.++ .++..+...|+.++|+..+++.......+......+...
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3334444443444466777777777644444311 1222 666666677777777777777763333343444444556
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269 118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS 197 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~ 197 (465)
+...|++++|+++|+.+.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHHHHH
Confidence 777777777777777777654 444566666666777777777777777777632 333444444433443445555577
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH----------------------------------------------
Q 048269 198 KIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA---------------------------------------------- 231 (465)
Q Consensus 198 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A---------------------------------------------- 231 (465)
+.++++.+.. +-+...+..+..++.+.|-...|
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 7777776653 22344444444444444333333
Q ss_pred --HHHHHHHHHc-CCCCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269 232 --MKVFQMMRVK-RMDDLGLSTY----RIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304 (465)
Q Consensus 232 --~~~~~~m~~~-~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (465)
+.-++.+... +..|.....| --.+.++...|+..++++.|+.+...|.+....+-..+..+|...++.++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 3333333321 1123121122 23455677888999999999999988877677788899999999999999999
Q ss_pred HHHHhcCC---------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHH-hhc
Q 048269 305 VVEEIEKP---------DISLYHGLIKGLLRLRRAREATQVFREMIKRG-------------CEPTMHTYIMLLQG-HLG 361 (465)
Q Consensus 305 ~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------------~~p~~~~~~~ll~~-~~~ 361 (465)
+++.+..+ +......|..+|...+++++|..+++++.+.. ..||-..+..+... +..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99988551 23335678889999999999999999998631 01122222211111 111
Q ss_pred ccC-----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHH
Q 048269 362 KRG-----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEV 429 (465)
Q Consensus 362 ~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 429 (465)
.++ ...-+-|......+.+.+...|.+.+|.+.++.... +.|+.. +......++...|++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 111 222333444555555555555555555555544443 234322 444445555555555555555
Q ss_pred HHHHHHc
Q 048269 430 GKKLREV 436 (465)
Q Consensus 430 ~~~~~~~ 436 (465)
.+.+.+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 5555543
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.6e-14 Score=123.46 Aligned_cols=379 Identities=15% Similarity=0.125 Sum_probs=264.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHH--HHhcCCHHHH-HHHHHHhhhCC-----------
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMT--LAEVRELKKM-VNFFHIMNDCG----------- 138 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~--~~~~~~~~~a-~~~~~~~~~~~----------- 138 (465)
+.+=|+|+.. ...|.+.++.-+++.|.+.|+ +++..-..+++. |....+.--+ .+.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3445566554 457888999999999999988 677665555543 2222222111 12233333222
Q ss_pred --------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269 139 --------CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 139 --------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
.+.+..+|..+|.++|+--..+.|.+++++.. ...+.+..+||.+|.+-.-..+ .+++.+|.+..+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 24567789999999999999999999999998 7779999999999987654433 7899999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHH----CCCC
Q 048269 210 PSIDVVDKMIETFFKINKDDE----AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ-AYTMLEEMFK----RGIE 280 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~ 280 (465)
||..|+|+++++..+.|+++. |.+++.+|.+-|+.| ...+|..+|..+++.++..+ +..++.++.. +.++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999998875 578889999999999 99999999999999998855 4444444432 2222
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 281 ----ADNLTLSSIIYGLLARGRLREAYKVVEEIEK--------PD---ISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345 (465)
Q Consensus 281 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 345 (465)
.|...|...+..|.+..+.+-|.++-.-... ++ ..-|..+....++....+.....|+.|+-+-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2566778888899999999999988776665 22 22356677788888999999999999998888
Q ss_pred CCCHHHHHHHHHHhhcccC-------------------------------CCCCCCchHHHHHHHHHHHhc-CCHHHHH-
Q 048269 346 EPTMHTYIMLLQGHLGKRG-------------------------------RKGPDPLVNFDTIFVGGLVKA-GKSLDAA- 392 (465)
Q Consensus 346 ~p~~~~~~~ll~~~~~~~~-------------------------------~~~~~~~~~~~~~li~~~~~~-g~~~~A~- 392 (465)
-|+..+...++++....+. .....|+...-..+-....++ -++.++.
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998744433 222222222111111111111 1122221
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhHHhhhhh
Q 048269 393 KYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG-LADLADIFQRYGKKMATRERRRN 460 (465)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 460 (465)
.--.+|.+..+ .....+...--+.+.|..++|.+++..+.+.+ -.|-++...+..+.+....++++
T Consensus 510 ~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s 576 (625)
T KOG4422|consen 510 SQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS 576 (625)
T ss_pred hhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence 12233443333 44556666677889999999999999996664 55666666767776666555544
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.5e-12 Score=132.13 Aligned_cols=346 Identities=10% Similarity=-0.031 Sum_probs=229.9
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCChHHHHHHHHHHHhcCC---HHHHH
Q 048269 55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---RLVNDKTFKIALMTLAEVRE---LKKMV 128 (465)
Q Consensus 55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~ 128 (465)
.+.+.+..+....++ +......+.-...+.|+.++|.++|+..... +..+.....-++..+.+.+. ..+++
T Consensus 360 ~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 360 EALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 444555555344466 7777777777888899999999999988763 12344455577777777655 23332
Q ss_pred HH----------------------HHHhhh-CCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269 129 NF----------------------FHIMND-CGC-EY--SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182 (465)
Q Consensus 129 ~~----------------------~~~~~~-~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (465)
.+ ++.... .+. ++ +...|..+..++.. ++.++|+..+.+.... .|+......
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~~~~L~ 514 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDAWQHRA 514 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCchHHHHH
Confidence 22 111111 111 33 56677777777766 6777788877776622 244444334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
+...+...|++++|...|+.+... +|+...+..+..++.+.|++++|.+.++...+.. |.....+..+...+...|
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 445556788888888888887554 4455556677777888888888888888887653 423333333344444568
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFRE 339 (465)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (465)
++++|...+++..+. .|+...+..+..++.+.|+.++|...+++... .+...++.+..++...|++++|+..|++
T Consensus 591 r~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 QPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888888765 34677788888888888888888888888777 4456667777788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHh
Q 048269 340 MIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYS 418 (465)
Q Consensus 340 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~ 418 (465)
..+. .|+.... +..+..++...|++++|+..+++..+ +.|+. .+.........
T Consensus 669 AL~l--~P~~~~a----------------------~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 669 AHKG--LPDDPAL----------------------IRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHh--CCCCHHH----------------------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHH
Confidence 8754 4543322 33445556888888888888888886 45654 35555666666
Q ss_pred hccchHHHHHHHHHHHHcC
Q 048269 419 NEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~g 437 (465)
+..+++.+.+-+++-...+
T Consensus 723 ~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 6777777777777666554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=3.6e-12 Score=126.70 Aligned_cols=378 Identities=11% Similarity=0.047 Sum_probs=264.1
Q ss_pred HHhhhhhCCCCC-CHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 048269 26 LHSSLSSCNFNL-THEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR 104 (465)
Q Consensus 26 ~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 104 (465)
+...++..+... ....+..++... ++.+.|+..++.++ .+. ..+......+...+...|++++|+++|+++.+..
T Consensus 57 L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~--~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 57 LQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQ--SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhc--cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 555555444441 122333444333 57789999999973 221 2234444444668888899999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 048269 105 LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLI 184 (465)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li 184 (465)
+.++..+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++....+.+...+..+.
T Consensus 133 P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 133 PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 878888888889999999999999999999876 466666655555555566776699999999855566777777777
Q ss_pred HHHHhcCCHHHHHHHHH------------------------------------------------HHHH-CCCCCcH-H-
Q 048269 185 KGYCDVGDLIEASKIWN------------------------------------------------LMTD-EGFEPSI-D- 213 (465)
Q Consensus 185 ~~~~~~g~~~~a~~~~~------------------------------------------------~m~~-~g~~~~~-~- 213 (465)
.+..+.|-...|.++.. .+.. .+-.|.. .
T Consensus 211 ~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~ 290 (822)
T PRK14574 211 EILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQAD 290 (822)
T ss_pred HHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchH
Confidence 76666665544444333 2221 0111221 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHH
Q 048269 214 ---VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG-----IEADNLT 285 (465)
Q Consensus 214 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~ 285 (465)
...-.+-++...|++.++++.|+.+...+.+. ...+-..+.++|...+++++|..+|+.+.... ..++...
T Consensus 291 ~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 291 YQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHH
Confidence 11234456778899999999999999888654 56688899999999999999999999987643 2234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC--C---------------CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEK--P---------------DI-SLYHGLIKGLLRLRRAREATQVFREMIKRGCEP 347 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~--~---------------~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 347 (465)
...|..+|...+++++|..+++.+.+ | |- ..+..++..+...|+..+|++.++++... .|
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP 447 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--AP 447 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 67889999999999999999999877 2 11 12344566788899999999999999754 56
Q ss_pred CHHHHHHHHHHhhcccC-----------CCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 048269 348 TMHTYIMLLQGHLGKRG-----------RKGPDP-LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL 414 (465)
Q Consensus 348 ~~~~~~~ll~~~~~~~~-----------~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (465)
...-............+ ...+.| +..+....+..+...|++.+|..+.+.+.+ ..|+......|-
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~ 524 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD 524 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence 54444433333333333 223344 456777888999999999999999999987 467666444443
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.68 E-value=7.7e-13 Score=123.30 Aligned_cols=281 Identities=12% Similarity=0.061 Sum_probs=217.8
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHcCCCHHHHHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN--KVVKTLCQRKLVVEAKY 164 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 164 (465)
.|+++.|.+.+....+....+...|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999998888765543222333444455668999999999999999875 45554333 34678889999999999
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 165 LILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI-------DVVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
.++++....+-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999666888899999999999999999999999999998755332 2334444444455566777777777
Q ss_pred HHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCH
Q 048269 238 MRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDI 314 (465)
Q Consensus 238 m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~ 314 (465)
+.+. .|.++.....+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+ .|.
T Consensus 255 lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 6543 3447888999999999999999999999998874 4455322 33344566999999999998887 455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048269 315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY 394 (465)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 394 (465)
..+..+...+.+.+++++|.+.|+...+. .|+..++..+-..+ .+.|+.++|.++
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~-----------------------~~~g~~~~A~~~ 383 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL-----------------------DRLHKPEEAAAM 383 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH-----------------------HHcCCHHHHHHH
Confidence 66788899999999999999999999954 68887766555554 899999999999
Q ss_pred HHHHHh
Q 048269 395 VERVMN 400 (465)
Q Consensus 395 ~~~m~~ 400 (465)
+++...
T Consensus 384 ~~~~l~ 389 (398)
T PRK10747 384 RRDGLM 389 (398)
T ss_pred HHHHHh
Confidence 998764
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=4.7e-12 Score=120.37 Aligned_cols=328 Identities=15% Similarity=0.137 Sum_probs=204.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 160 (465)
...+.-.|++++|.+++.+..+.++.....|..|...|-..|+.+++...+-.+.... +-|...|..+.....+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 3344444888888888888888877777778888888888888888877776655543 556677777777777888888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID----VVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
+|.-+|.+..+-.+++...+---+..|-+.|+...|..-|.++....-+.|.. ..-.++..+...++-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888775556666666666677778888888888888877653211222 22334555666666677777777
Q ss_pred HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHH
Q 048269 237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL--------------------------SSII 290 (465)
Q Consensus 237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------------------------~~li 290 (465)
.....+....+...++.++..+.+...++.+......+......+|..-+ ..++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 76653323325667777788888888888777777766652111221111 0111
Q ss_pred HHHH--hcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC
Q 048269 291 YGLL--ARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG 364 (465)
Q Consensus 291 ~~~~--~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 364 (465)
-++. +.+...+++.-|-.... .+...|.-+..+|...|++.+|+.+|..+......-+..
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~-------------- 450 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF-------------- 450 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh--------------
Confidence 2222 22333333333322222 345566667777777777777777777776442211211
Q ss_pred CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 365 RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 365 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
.|-.+.++|...|.+++|.+.|++.+. ..|+.. .--.|-..+.+.|+.++|.+.++.+.
T Consensus 451 ---------vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 451 ---------VWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ---------hhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 233444556777777777777777775 345433 44445555666777777777777744
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=9.6e-13 Score=110.72 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=207.8
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHcCCCHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL------EMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~ 160 (465)
..+.++|++.|-+|.+.++.+..+--++.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 456778888888888766666667777888888888888888888877763 332 22334566677888888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS----IDVVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
.|+.+|..+...-.--......|+..|-...+|++|+++-+++.+.|-++. ...|..|...+.-..+++.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888732233455677888888888888888888888887765443 2346666677777788888888888
Q ss_pred HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCH
Q 048269 237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDI 314 (465)
Q Consensus 237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~ 314 (465)
...+. .|..+..--.+.+.....|++++|.+.++...+.+...-+.+...|..+|...|+.++....+..+.+ +..
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 88766 44345555556677888899999999998888887666677778888889999999998888888776 555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048269 315 SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY 394 (465)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 394 (465)
..-..+-..-....-.+.|...+.+-+.. .|+...+.-++...... ...|...+....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~d--------------------aeeg~~k~sL~~ 340 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLAD--------------------AEEGRAKESLDL 340 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhcc--------------------ccccchhhhHHH
Confidence 55555555545555567777766666644 68888888888776322 344556777777
Q ss_pred HHHHHhC
Q 048269 395 VERVMNR 401 (465)
Q Consensus 395 ~~~m~~~ 401 (465)
++.|...
T Consensus 341 lr~mvge 347 (389)
T COG2956 341 LRDMVGE 347 (389)
T ss_pred HHHHHHH
Confidence 7777653
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.66 E-value=5.8e-12 Score=120.63 Aligned_cols=395 Identities=11% Similarity=0.049 Sum_probs=228.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
..+.+...+..+....+ .|+.+.+.|...|.-.|+++.++.+.+.+..... .-...|-.+.++|...|++++|.
T Consensus 251 s~~~~~~ll~~ay~~n~---~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN---ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHhhcC---CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 45577777777733333 3777888888888888888888888887776543 23346778888888888888888
Q ss_pred HHHHHhhhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHH
Q 048269 129 NFFHIMNDCGCEYSL--EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG----DLIEASKIWNL 202 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~ 202 (465)
..|.+..+.. ++. ..+-.+.+.+.+.|+++.+...|+.+....+-+..+...|...|...+ ..+.|..++..
T Consensus 328 ~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 328 KYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 8887766643 333 334457778888888888888888877656677777777777777664 34555556555
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 048269 203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM----RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR- 277 (465)
Q Consensus 203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 277 (465)
..+.- +.|...|-.+...+-...-+.. +.+|... ...+..+ .+...|.+...+...|+++.|...|......
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 55442 3456666666665554443333 4444332 2333333 5667777777777777777777777766543
Q ss_pred --CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 048269 278 --GIEADN------LTLSSIIYGLLARGRLREAYKVVEEIEK--PDIS-LYHGLIKGLLRLRRAREATQVFREMIKR-GC 345 (465)
Q Consensus 278 --~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~ 345 (465)
...+|. .+--.+...+-..++.+.|.+.+..+.+ |... .|--+.......+...+|...++..... .-
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 112222 1222233444445556666666655554 2221 1222221111223444444444444322 11
Q ss_pred CCCH----------------------------------HHHHHHHHHhhcccC-----------------------CCCC
Q 048269 346 EPTM----------------------------------HTYIMLLQGHLGKRG-----------------------RKGP 368 (465)
Q Consensus 346 ~p~~----------------------------------~~~~~ll~~~~~~~~-----------------------~~~~ 368 (465)
.|+. .+...|-..+..... -..-
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 2222 222222221111111 0111
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC-CCCchhHHHH
Q 048269 369 DPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG-LADLADIFQR 447 (465)
Q Consensus 369 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ 447 (465)
+-|...-|.+.-.++..|++.+|..+|.+..+... -...+|-.+..+|...|++-.|.++++...+.- ..-.+.+...
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 22233335566667777888888888888777532 344567777888888888888888888777663 3334444555
Q ss_pred HHHHHhHH
Q 048269 448 YGKKMATR 455 (465)
Q Consensus 448 ~~~~~~~~ 455 (465)
+++..-.+
T Consensus 722 Lara~y~~ 729 (1018)
T KOG2002|consen 722 LARAWYEA 729 (1018)
T ss_pred HHHHHHHh
Confidence 55443333
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=2.1e-12 Score=120.98 Aligned_cols=297 Identities=11% Similarity=0.033 Sum_probs=214.0
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHH
Q 048269 77 FNRMVDII--GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNKVVKT 152 (465)
Q Consensus 77 ~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~ 152 (465)
+..+.++. ...|+++.|.+.+.+..+..+.+...+-....+..+.|+.+.|.+.+....+.. |+. ...-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHH
Confidence 33444443 456999999999998877655444556666788889999999999999987653 443 344445788
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH---HhcCCHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF---FKINKDD 229 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~ 229 (465)
+...|+++.|...++.+....|-+......+...+...|+++.|.+.+..+.+.+..+.......-..++ ...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999995557788899999999999999999999999999987543332212112222 3333333
Q ss_pred HHHHHHHHHHHcCC--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCCHHHHHH
Q 048269 230 EAMKVFQMMRVKRM--DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT--L-SSIIYGLLARGRLREAYK 304 (465)
Q Consensus 230 ~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~-~~li~~~~~~~~~~~a~~ 304 (465)
.+.+.+..+..... .+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 33445555444311 11277889999999999999999999999999873 33331 1 111222334578888888
Q ss_pred HHHHhcC--C-CH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHH
Q 048269 305 VVEEIEK--P-DI--SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFV 379 (465)
Q Consensus 305 ~~~~~~~--~-~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li 379 (465)
.++...+ | |. ....++...+.+.|++++|.+.|+........|+...+..+..
T Consensus 321 ~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~---------------------- 378 (409)
T TIGR00540 321 LIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD---------------------- 378 (409)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH----------------------
Confidence 8888776 3 33 5566888899999999999999996444455788777654444
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 048269 380 GGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.+.+.|+.++|.+++++...
T Consensus 379 -ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 -AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -HHHHcCCHHHHHHHHHHHHH
Confidence 45899999999999998654
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=9.7e-16 Score=136.45 Aligned_cols=256 Identities=14% Similarity=0.130 Sum_probs=69.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRR--LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
.+...+.+.|++++|+++++...... +.+...|..+.......++++.|+..++.+...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555555556666655554332222 2233344444444455555556666555555543 2234444444444 455
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG-FEPSIDVVDKMIETFFKINKDDEAMKVF 235 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (465)
+++++|.+++.+.-.. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+
T Consensus 91 ~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555543311 2344444555555555556665555555554321 2334455555555555556666666666
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---C
Q 048269 236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---P 312 (465)
Q Consensus 236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~ 312 (465)
++..+. .|.+......++..+...|+.+++..+++...+.. +.|+..+..+..+|...|+.++|...|++..+ .
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 555544 34345555555555555555555555555554432 22344445555555555666666665555544 3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 313 DISLYHGLIKGLLRLRRAREATQVFREM 340 (465)
Q Consensus 313 ~~~~~~~li~~~~~~~~~~~a~~~~~~m 340 (465)
|+.....+..++...|+.++|.++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4445555555555556666665555544
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=1.6e-11 Score=116.81 Aligned_cols=357 Identities=12% Similarity=0.088 Sum_probs=275.4
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++.+.|.+++..++...+. +...|..|...|-..|+.+++...+-.+-..++.+...|..+.....+.|+++.|.-+
T Consensus 153 g~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 4788999999999776665 8999999999999999999999998877777777889999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC-HH----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN-EI----AYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~----~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
|.+..+.. +++...+---...|-+.|+...|..-|.++..-.+|. .. ..-.+++.+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999976 6666666667788999999999999999998333332 22 223446667778888999998888876
Q ss_pred C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------------------CCcchHHHHHHHH
Q 048269 206 E-GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD--------------------------LGLSTYRIVIDWM 258 (465)
Q Consensus 206 ~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------------------------~~~~~~~~li~~~ 258 (465)
. +-..+...++.++..+.+..+++.|......+......+ .+..++ .+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 2 223456678899999999999999999888887621111 011221 222334
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHH
Q 048269 259 CKRGKISQAYTMLEEMFKRG--IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRARE 332 (465)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 332 (465)
.+....+....+...+...+ +.-+...|.-+..+|.+.|++.+|..+|..+.. .+...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44555555556666666665 344567889999999999999999999999987 567789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCC
Q 048269 333 ATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN--------RGVE 404 (465)
Q Consensus 333 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~ 404 (465)
|.+.|+..+. ..|+.....+-+..+ +.+.|+.++|.+.++.+.. .+..
T Consensus 468 A~e~y~kvl~--~~p~~~D~Ri~Lasl----------------------~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 468 AIEFYEKVLI--LAPDNLDARITLASL----------------------YQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHh--cCCCchhhhhhHHHH----------------------HHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 9999999984 467655544444443 6889999999999999642 2345
Q ss_pred CCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
|+....-.....+...|+.++...+.-.|+..
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55666666667778889998888887777763
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=2.9e-15 Score=133.40 Aligned_cols=250 Identities=13% Similarity=0.094 Sum_probs=115.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++++.|+++++.. ........|...|..+.......++++.|.+.++++...+..++..+..++.. ...+++++|.++
T Consensus 22 ~~~~~Al~~L~~~-~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~ 99 (280)
T PF13429_consen 22 GDYEKALEVLKKA-AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 4889999999653 22211133667777777788889999999999999998887777778888887 799999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
+....+. .++...+..++..+.+.++++++..+++++. ...+.+...|..+...+.+.|+.++|++.+++..+.
T Consensus 100 ~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-- 175 (280)
T PF13429_consen 100 AEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-- 175 (280)
T ss_dssp --------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--
T ss_pred ccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 9877654 3667778889999999999999999999977 445678889999999999999999999999999987
Q ss_pred CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048269 209 EP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLS 287 (465)
Q Consensus 209 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 287 (465)
.| |......++..+...|+.+++.+++....+.. |.++..+..+..+|...|+.++|..+|++..+.. +.|+.+..
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 45 57788899999999999999999999888764 4478889999999999999999999999988863 34888889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 048269 288 SIIYGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~~ 309 (465)
.+..++...|+.++|.++..++
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHT---------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999988765
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3.9e-12 Score=118.60 Aligned_cols=291 Identities=12% Similarity=0.033 Sum_probs=223.5
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHH-HHHHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHHH
Q 048269 40 EFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM-VDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMT 117 (465)
Q Consensus 40 ~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 117 (465)
.+...++....++++.|.+..... ... .+++..+..+ ..+..+.|+++.|.+.++++.+..+.+. .........
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~-~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRN-ADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH-Hhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 345666666667999999887775 222 2234444444 5555899999999999999987654332 222244678
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHH--------hHHHHHHHHHh
Q 048269 118 LAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI--------AYGWLIKGYCD 189 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------~~~~li~~~~~ 189 (465)
+...|+++.|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+....+.. +|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999876 667888999999999999999999999999922222222 34444554455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048269 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYT 269 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 269 (465)
..+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .+ +. --.++.+....++.+++.+
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~-~~--~l~~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY-DE--RLVLLIPRLKTNNPEQLEK 315 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-CH--HHHHHHhhccCCChHHHHH
Confidence 56667777777776443 2457888899999999999999999999998874 33 43 2233455556699999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
..+...+... -|+..+..+...+.+.+++++|.+.|+...+ |+...|..+...+.+.|+.++|.+++++-..
T Consensus 316 ~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999987733 3667788999999999999999999999988 9999999999999999999999999998754
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=3.5e-12 Score=112.11 Aligned_cols=396 Identities=11% Similarity=0.046 Sum_probs=251.1
Q ss_pred CCCCCCHHHHHHHHhcCCC--ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CC--
Q 048269 33 CNFNLTHEFFLQICNNFPL--SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VN-- 107 (465)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-- 107 (465)
.+..++...+..+...+.. -...|+..++.+ .+..-|+.....-..+-..+.+.+.+.+|++.++.....-+ .+
T Consensus 195 inldltfsvl~nlaqqy~~ndm~~ealntyeii-vknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~ 273 (840)
T KOG2003|consen 195 INLDLTFSVLFNLAQQYEANDMTAEALNTYEII-VKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD 273 (840)
T ss_pred ccccchHHHHHHHHHHhhhhHHHHHHhhhhhhh-hcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchh
Confidence 3455666666666555543 244677777775 44433333333334566778888899999999877665433 22
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCC----------
Q 048269 108 --DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWI---------- 173 (465)
Q Consensus 108 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~---------- 173 (465)
....+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|. .+.
T Consensus 274 ~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 274 MRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 234556666788999999999999988775 5787776666667777889999999999886 332
Q ss_pred -CCCHHhHHHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCcHH-------------HH--------HHHHHHHHh
Q 048269 174 -KPNEIAYGWLI-----KGYCDVG--DLIEASKIWNLMTDEGFEPSID-------------VV--------DKMIETFFK 224 (465)
Q Consensus 174 -~~~~~~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------------~~--------~~li~~~~~ 224 (465)
.|+....+.-| +-+-+.. +-++++-.-.++..--+.|+-. .+ ..-...+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 22222222222 1111111 1111221111222111122110 00 011224677
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC------------------------------CcchHHHHH-----HHHHhcCChHHHHH
Q 048269 225 INKDDEAMKVFQMMRVKRMDDL------------------------------GLSTYRIVI-----DWMCKRGKISQAYT 269 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~------------------------------~~~~~~~li-----~~~~~~~~~~~a~~ 269 (465)
.|+++.|.+++.-+.+..-... +..-||.-. ..-..+|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 8888888877776654421110 111111110 11124578899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269 270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCE 346 (465)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 346 (465)
.|++.....-.-....|+. --.+...|++++|+..|-++.. .+..+.--+...|-...+...|++++.... .+.
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~--sli 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLI 588 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccC
Confidence 9998876632222222332 2246788999999999988776 777777778888888899999999987665 455
Q ss_pred CC-HHHHHHHHHHhhcccC-----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 048269 347 PT-MHTYIMLLQGHLGKRG-----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL 414 (465)
Q Consensus 347 p~-~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (465)
|+ +....-+-..|-..++ -.-++.+..+...|...|....-+++|+.+|++..- ++|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 65 5555555555533333 455788899999999999999999999999999864 799999999998
Q ss_pred HHHh-hccchHHHHHHHHHHHHc
Q 048269 415 HYYS-NEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 415 ~~~~-~~g~~~~a~~~~~~~~~~ 436 (465)
..|. +.|++++|.++++...+.
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 8876 479999999999988765
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=7.7e-12 Score=105.37 Aligned_cols=301 Identities=11% Similarity=0.074 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHH
Q 048269 35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKT 110 (465)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~ 110 (465)
.+++.+.+..+=--+++++++|.+.|-.++..++. +..+.-+|-+.|.+.|..+.|+.+...+.++--.+ ..+
T Consensus 33 ~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA 109 (389)
T COG2956 33 NRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA 109 (389)
T ss_pred hhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 44677777777656777999999999998554444 67777788999999999999999999887653322 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCC----HHhHHHHHH
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPN----EIAYGWLIK 185 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~----~~~~~~li~ 185 (465)
.-.+.+-|...|-++.|+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++. .+-.+. ...|.-|..
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 5667888999999999999999999865 4456677889999999999999999999887 332222 245667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269 186 GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS 265 (465)
Q Consensus 186 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 265 (465)
.+....+++.|..++.+..+.. +-.+..--.+.+.+...|+++.|.+.++.+.+++..- -+.+...|..+|...|+.+
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 189 QALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHhCCHH
Confidence 7778899999999999998864 2234444567788899999999999999999885444 4567888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHhcC-CCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 048269 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK-VVEEIEK-PDISLYHGLIKGLLR---LRRAREATQVFREM 340 (465)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~-~~~~~~~~li~~~~~---~~~~~~a~~~~~~m 340 (465)
+....+..+.+....+ ..-..+........-.+.|.. +.+.+.. |+...+..+|..-.. .|...+-+.+++.|
T Consensus 267 ~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 267 EGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 9999999998874433 333444444444444555554 4455555 999999999987554 35577778888888
Q ss_pred HHc
Q 048269 341 IKR 343 (465)
Q Consensus 341 ~~~ 343 (465)
+..
T Consensus 345 vge 347 (389)
T COG2956 345 VGE 347 (389)
T ss_pred HHH
Confidence 754
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.8e-12 Score=119.34 Aligned_cols=289 Identities=11% Similarity=-0.007 Sum_probs=195.9
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCH--HhHHHHHHHHHhcCCHHH
Q 048269 119 AEVRELKKMVNFFHIMNDCGCEYSL-EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE--IAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~li~~~~~~g~~~~ 195 (465)
...|+++.|.+.+....+. .|+. ..+-....++.+.|+.+.|.+++.+..... |+. .........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcCchHHHHHHHHHHHHCCCHHH
Confidence 4568888888888877665 3443 333444567777888888888888876322 332 234445777788888888
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchH-HHHHHHH---HhcCChHHHHHHH
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTY-RIVIDWM---CKRGKISQAYTML 271 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~---~~~~~~~~a~~~~ 271 (465)
|...++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+..+ ...+ ..-..++ ...+..+...+.+
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~--~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD--DEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 888888888874 3356678888888888888988888888888876443 2223 2112222 2223333333455
Q ss_pred HHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 272 EEMFKRGI---EADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISL---YHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 272 ~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
..+.+... +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.++...+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54444321 13677788888888888888888888888877 44432 111222233446777777777776643
Q ss_pred CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269 344 GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV 423 (465)
Q Consensus 344 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (465)
.|+... . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.
T Consensus 329 --~p~~~~-~-------------------~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 329 --VDDKPK-C-------------------CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred --CCCChh-H-------------------HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 455441 0 223445677899999999999999644444689999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048269 424 VMFEEVGKKLRE 435 (465)
Q Consensus 424 ~~a~~~~~~~~~ 435 (465)
++|.+++++-..
T Consensus 387 ~~A~~~~~~~l~ 398 (409)
T TIGR00540 387 AEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999998654
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.2e-11 Score=113.76 Aligned_cols=309 Identities=11% Similarity=0.004 Sum_probs=219.9
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL 105 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 105 (465)
+..+|+.+|..+-+-+-...+.--..++..|+.+|..++...+...||+..-. -..+.+.|+.+.|+..|+...+.++
T Consensus 153 F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp 230 (1018)
T KOG2002|consen 153 FHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDP 230 (1018)
T ss_pred HHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcCh
Confidence 66667766666444444444422233888999999998888888888875532 2567788999999999999988887
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC---CCCCHHh
Q 048269 106 VNDKTFKIALMTLAEVR---ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW---IKPNEIA 179 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~ 179 (465)
.+..++..|...-.... .+..++..+...-... .-++.+.+.|..-|.-.|++..+..+...+... -..-...
T Consensus 231 ~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes 309 (1018)
T KOG2002|consen 231 TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAES 309 (1018)
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 55555555544333333 3556666666665544 567778888888888999999999998887721 1223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI--DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW 257 (465)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 257 (465)
|-.+.++|-..|++++|...|-+..+. .++. -.+--+...+.+.|+.+.+...|+.+.+. .|.+..+...+...
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhH
Confidence 778889999999999999998887765 3443 34456778899999999999999998876 55467788887777
Q ss_pred HHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------CCHhhHHHHHHHHH
Q 048269 258 MCKRG----KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--------PDISLYHGLIKGLL 325 (465)
Q Consensus 258 ~~~~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~ 325 (465)
|+..+ ..+.|..++.+..+.- +-|...|-.+...+....- ..++..+..+.. +.+...|.+.....
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 77765 4566777777766653 3366677776666554433 333555554432 77788899999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048269 326 RLRRAREATQVFREMIKR 343 (465)
Q Consensus 326 ~~~~~~~a~~~~~~m~~~ 343 (465)
..|++.+|...|......
T Consensus 464 ~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HhcChHHHHHHHHHHhhh
Confidence 999999999999888754
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.3e-12 Score=118.73 Aligned_cols=278 Identities=14% Similarity=0.019 Sum_probs=222.4
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
..+.|+..|......+.+ +..+...+.++|.+.+++++|.++|+.+.+..+ .+.++|.+.+..+-+. -++
T Consensus 334 ~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 567899999985333333 557778889999999999999999999988766 3667888888766432 233
Q ss_pred HHHH-HhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 129 NFFH-IMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
..+. .+.+.. +-.+.+|.++..+|+-+++.+.|++.|++...-.+....+|+.+..-+.....+|.|...|+....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 3332 333322 567889999999999999999999999998854455789999999999999999999999998875
Q ss_pred CCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048269 208 FEPSIDVV---DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL 284 (465)
Q Consensus 208 ~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (465)
.|...| .-+.-.|.+.++++.|+-.|+...+- .|.+.+....+...+.+.|+.|+|++++++......+ |+.
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 355544 45667799999999999999998754 6667888888888999999999999999999877544 555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048269 285 TLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRG 344 (465)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 344 (465)
.--.-+..+...+++++|+..++++++ .+...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 555566778889999999999999998 455677888899999999999999998888543
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.6e-12 Score=117.44 Aligned_cols=279 Identities=14% Similarity=0.027 Sum_probs=185.8
Q ss_pred ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269 89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG--CEYSLEMLNKVVKTLCQRKLVVEAKYLI 166 (465)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 166 (465)
+..+|..+|+.....-..+..+...+.++|...+++++|+++|+.+.+.. ..-+...|.+.+.-+-+ +-++.++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677888877555444455677778888888888888888888877642 11255667666654322 2233333
Q ss_pred HH-hhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269 167 LK-LSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244 (465)
Q Consensus 167 ~~-m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 244 (465)
.+ +....+-.+.+|.++..+|.-.++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+.... +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 33 22334556778888888888888888888888887765 34 567788877778888888888888887663 34
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHH
Q 048269 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLI 321 (465)
Q Consensus 245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li 321 (465)
|.+-.+|.-+.-.|.+.++++.|+-.|++..+-+.. +......+...+.+.|+.++|+++++++.. .|+-.--...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 434455556667788888888888888877765432 455556666677778888888888887765 3444444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 322 KGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
..+...+++++|+..++++++ +.|+..+...++ ...|.+.|+.+.|+.-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~ll----------------------gki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALL----------------------GKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHH----------------------HHHHHHHccchHHHHhhHHHhc
Confidence 556667777888888877774 456655443333 3335777777777777777765
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=1.7e-10 Score=100.37 Aligned_cols=289 Identities=13% Similarity=0.111 Sum_probs=231.4
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI 166 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 166 (465)
.|+|..|++...+-.+.+..+.-.|.....+--+.|+.+.+-.++.+..+..-.++...+-+..+.....|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 59999999999998777776777788888888999999999999999988644677788888889999999999999999
Q ss_pred HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI-------DVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
+++...-+.++........+|.+.|++.....++..|.+.|+--+. .+|..+++-....+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 9988555778889999999999999999999999999999876554 467777777777777777677777765
Q ss_pred HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhh
Q 048269 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISL 316 (465)
Q Consensus 240 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~ 316 (465)
.+ ... ++..-.+++.-+.+.|+.+.|.++.++..+.+..|. ... .-.+.+-++...-.+..+.-.+ .++..
T Consensus 257 r~-lr~-~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 257 RK-LRN-DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred HH-hhc-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 54 222 567788889999999999999999999998877655 111 2234566666666666655544 56688
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE 396 (465)
Q Consensus 317 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (465)
+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|+.+-. +|.+.|+..+|.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~-----------------------~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELAD-----------------------ALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHH-----------------------HHHHcCChHHHHHHHH
Confidence 89999999999999999999997774 4677666655544 4599999999999999
Q ss_pred HHHhCCCCCC
Q 048269 397 RVMNRGVEVP 406 (465)
Q Consensus 397 ~m~~~~~~p~ 406 (465)
+....-..|+
T Consensus 386 e~L~~~~~~~ 395 (400)
T COG3071 386 EALLLTRQPN 395 (400)
T ss_pred HHHHHhcCCC
Confidence 8875434444
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.55 E-value=5.3e-11 Score=103.44 Aligned_cols=273 Identities=13% Similarity=0.075 Sum_probs=163.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (465)
.|++.+|+++..+-.+.-+.....|..-..+.-+.||.+.+-.++.+..+.--.++....-+..+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45666666665554422222233444444555555666666666666555422344445555555555666666666666
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN-------LTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
+++.+. .|.++........+|.+.|++.....++..|.+.|.-.|+ .+|+.+++-....+..+.-...++.
T Consensus 177 ~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 555544 3334555566666666666666666666666655543332 2234444444444444444445555
Q ss_pred hcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCCchHH
Q 048269 309 IEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDPLVNF 374 (465)
Q Consensus 309 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~ 374 (465)
... .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..++ +. +..-.+ ....+-++..
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~---~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL---IP-RLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH---Hh-hcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 544 44555555566666666666666666666655555541111 11 111111 2233344566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|..+..++.+.|+.+.|.+..++....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78889999999999999999998886 6899999999999999999999999999987744
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=9.7e-11 Score=103.24 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=155.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
..|++++|...|++...+.-.-....|| +.-.+-..|+.++|+++|-.+.. +...+..+...+...|....+..+|+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 4577888888888877653222222232 22335667888888888877643 23336677777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345 (465)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 345 (465)
+++-+.... ++.|+....-|...|-+.|+-..|.+..-+--. -+..+..-|..-|....-+++++.+|++.. -+
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--li 655 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LI 655 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hc
Confidence 888766544 555788888888888888888888887665554 566777777777888888888888888765 56
Q ss_pred CCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHH
Q 048269 346 EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVM 425 (465)
Q Consensus 346 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 425 (465)
.|+..-|..++..| +.+.|++++|.++++..... +.-|.....-|++.|...|..+
T Consensus 656 qp~~~kwqlmiasc----------------------~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d- 711 (840)
T KOG2003|consen 656 QPNQSKWQLMIASC----------------------FRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD- 711 (840)
T ss_pred CccHHHHHHHHHHH----------------------HHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh-
Confidence 88888888888777 57899999999999999864 5557778888888887766432
Q ss_pred HHHHHHHHH
Q 048269 426 FEEVGKKLR 434 (465)
Q Consensus 426 a~~~~~~~~ 434 (465)
+.++.+++.
T Consensus 712 ~key~~kle 720 (840)
T KOG2003|consen 712 AKEYADKLE 720 (840)
T ss_pred HHHHHHHHH
Confidence 444444443
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=2.6e-09 Score=98.57 Aligned_cols=354 Identities=11% Similarity=-0.023 Sum_probs=236.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 154 (465)
.+|+.-...|.+.+.++-|..+|....+-.+-....|......--..|..++...+|++.... ++-....|-....-+-
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 445555555555555555666665555554444455555555555556666666666666553 2333344444445555
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048269 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 234 (465)
..|++..|..++.+...-.+.+...|..-++.-..+..++.|..+|.+.... .|+..+|..-+..---.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 5677777777777766434556667777777777777777777777776654 46666666666666666777777777
Q ss_pred HHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---
Q 048269 235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--- 311 (465)
Q Consensus 235 ~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 311 (465)
+++..+. .|.-...|-.+...+-+.++.+.|...|..-.+. ++-....|..|...--+.|.+-.|..+++...-
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 7777654 4423445666667777777777777777654443 333455666777777777888888888887765
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-------CCCCCCchHHHHHHHHHHHh
Q 048269 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-------RKGPDPLVNFDTIFVGGLVK 384 (465)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~~~~~~~~~~~li~~~~~ 384 (465)
.+...|-..|..=.+.|+.+.|..+..+.++. ++.+...|..-|...-..+. -+...-|++..-.....|..
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 56677888888888899999888888777653 33334444444433321111 34456677888888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 385 AGKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
..++++|.+.|.+... +.||. .+|.-+..-+..+|.-+.-.+++++.....
T Consensus 830 e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 9999999999999987 45654 488888888999999888899998888763
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.2e-10 Score=101.29 Aligned_cols=322 Identities=12% Similarity=0.064 Sum_probs=199.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH--HHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML--NKVV 150 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll 150 (465)
|+..+...--.+-+.|..+.|++.|......-+..+.+|..|...+.. ++....... |.+.|.... -.+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchHHHHHHHH
Confidence 444444444455555666666666666655555555555555444322 111111111 112111111 1233
Q ss_pred HHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----cHHHHHHHHHHHHhc
Q 048269 151 KTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP----SIDVVDKMIETFFKI 225 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~ 225 (465)
.++-...+.+++.+-.+... .|++-+...-+....+.-...|++.|+.+|+++.++ .| |..+|..++-.-...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhhh
Confidence 44444455666666666555 555555555555555555667777777777777765 22 456666555432221
Q ss_pred CCHH-HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269 226 NKDD-EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304 (465)
Q Consensus 226 g~~~-~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (465)
.+.. .|..+++ + ... -+.|+.++.+-|.-.++.++|..+|+...+.+.. ....|+.+.+-|....+...|..
T Consensus 313 skLs~LA~~v~~-i--dKy---R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I--DKY---RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HHHHHHHHHHHH-h--ccC---CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 1111 1222221 1 111 3456777777777777777777777777766432 45566667777777777777777
Q ss_pred HHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHH
Q 048269 305 VVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGG 381 (465)
Q Consensus 305 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~ 381 (465)
-++...+ .|...|-.+..+|.-.+...-|+-.|++... ++|+ |+..|.+|..+
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPn----------------------DsRlw~aLG~C 441 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPN----------------------DSRLWVALGEC 441 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCC----------------------chHHHHHHHHH
Confidence 7777776 5666777777777777777777777777763 3454 45567777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 382 LVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
|.+.++.++|++.|++....| ..+...+..|...+.+.++.++|..++++.++.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999865 346678999999999999999999999988874
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=1.3e-08 Score=94.02 Aligned_cols=371 Identities=9% Similarity=0.008 Sum_probs=265.6
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+++.|..++..+.+ ..+.+...|. +|.+..-++.|.++++...+.=+.+..+|.+....--.+|+.+...++.
T Consensus 391 ~~~darilL~rAve---ccp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 391 EPEDARILLERAVE---CCPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ChHHHHHHHHHHHH---hccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 44457777776622 1222444444 4556667788888888887665567778887777777888888888877
Q ss_pred HHh----hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 132 HIM----NDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWI--KPNEIAYGWLIKGYCDVGDLIEASKIWNLMT 204 (465)
Q Consensus 132 ~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 204 (465)
.+- ...|+..+...|-.=...|-..|..-.+..+..... -|+ ..-..||..-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 643 447778888888777777877888777777777765 332 2345677788888888888888888888887
Q ss_pred HCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048269 205 DEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNL 284 (465)
Q Consensus 205 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (465)
+- ++-+...|......--..|..+....+|++.... .|.....|-.....+-..|+...|..++....+.... +..
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 65 2345566766666666678888888888888876 4445666777777777888888888888888776443 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 048269 285 TLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362 (465)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 362 (465)
.+-.-+........++.|..+|.+... ++...|..-+..---.++.++|.+++++.++. -|+-.-+..++.-....
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 777778888888888888888888776 77777776666666678888888888887754 56655555554433322
Q ss_pred cC------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHH
Q 048269 363 RG------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVG 430 (465)
Q Consensus 363 ~~------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (465)
.+ .+..+-.+..|-.|...=-+.|..-.|..++++..-.+ .-+...|...|+.-.+.|+.+.|..++
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 22 44455556777777777778888888888888887542 235568888888888888888888887
Q ss_pred HHHHHc
Q 048269 431 KKLREV 436 (465)
Q Consensus 431 ~~~~~~ 436 (465)
-+.++.
T Consensus 777 akALQe 782 (913)
T KOG0495|consen 777 AKALQE 782 (913)
T ss_pred HHHHHh
Confidence 776654
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2e-10 Score=101.63 Aligned_cols=305 Identities=10% Similarity=0.003 Sum_probs=218.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHcCCCH
Q 048269 83 IIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~ 159 (465)
++.+..+.+++..=.+.....|.+.. ..-+....+.-...+++.|+.+|+++.+... --|..+|..++-.- ..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~- 312 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh-
Confidence 34444456666666666666776543 3334444555667788888888888887631 12566776665432 221
Q ss_pred HHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 160 VEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 160 ~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 238 (465)
..+.++.+-. .-.+-.+.|+..+.+.|+-.++.++|...|+...+.+ +-....|+.+..-|....+...|++.++..
T Consensus 313 -skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 -SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred -HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1122222222 1123345678888899999999999999999999875 335678999999999999999999999999
Q ss_pred HHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHh
Q 048269 239 RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDIS 315 (465)
Q Consensus 239 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~ 315 (465)
++- .|.|-..|-.|..+|.-.+.+.=|+-+|++..... +.|...|.+|..+|.+.++.++|++.|..... .+..
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 855 66699999999999999999999999999988763 34899999999999999999999999999887 4447
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHH
Q 048269 316 LYHGLIKGLLRLRRAREATQVFREMIKR----GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDA 391 (465)
Q Consensus 316 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 391 (465)
.+..+...|-+.++.++|...|...++. |..-+......+ -|...+.+.+++++|
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~---------------------fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL---------------------FLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH---------------------HHHHHHHhhcchHHH
Confidence 8999999999999999999999887753 322221111111 133446888999998
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 048269 392 AKYVERVMNRGVEVPRFDYNKFLHYYS 418 (465)
Q Consensus 392 ~~~~~~m~~~~~~p~~~~~~~ll~~~~ 418 (465)
..+....... .+...--+.|++.+.
T Consensus 527 s~Ya~~~~~~--~~e~eeak~LlReir 551 (559)
T KOG1155|consen 527 SYYATLVLKG--ETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 8877666542 333333444444443
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=3.6e-11 Score=117.10 Aligned_cols=182 Identities=9% Similarity=-0.036 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHHHHh---------cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAE---------VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 160 (465)
+++|.+.|++..+.++.+...|..+..++.. .+++++|...+++..+.+ +-+...+..+..++...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 4455555555555444444444443333221 122455555555555443 334444444555555555555
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
+|...|++.....+.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|.+.+++..
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 55555555543333444455555555555555555555555555442 22 1122222333444455555555555544
Q ss_pred HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 240 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
... .|.++..+..+..++...|+.++|...+.++.
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 331 12123334444455555555555555555543
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=4.6e-11 Score=103.57 Aligned_cols=200 Identities=12% Similarity=0.027 Sum_probs=139.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677778888888888888888888877766666777777788888888888888888777654 4455666777777
Q ss_pred HHcCCCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269 153 LCQRKLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 230 (465)
+...|++++|.+.+++... ..+.....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7778888888888887762 122334456666677777777777777777776653 2245566677777777777777
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK 276 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 276 (465)
|.+.+++.... .|.+...+..+...+...|+.+.|..+.+.+..
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777655 232555566666667777777777777666543
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=3.8e-09 Score=93.96 Aligned_cols=377 Identities=9% Similarity=0.035 Sum_probs=240.3
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+...|..+|+.++..+.. +...|-..+.+=.++.++..|..+++.....-+--...|--.+..--..|+...|.++|
T Consensus 88 e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456799999998555543 88888889999999999999999999887654422234555555555678999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-C
Q 048269 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE-GF-E 209 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~ 209 (465)
+.-.+. .|+...|++.+..=.+.+.++.|..+|++..- +.|++.+|--..+-=.+.|+...+.++|....+. |- .
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 988874 79999999999999999999999999999872 2589999888888888889999999888887763 10 1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------------------CCCCCC
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVK------------------------------------------RMDDLG 247 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------------------~~~~~~ 247 (465)
.+...+.+....=.++..++.|.-+|.-..+. .-.|.|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 12223333333223334444444444433322 012335
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-H------HHHH---HHHHHHhcCCHHHHHHHHHHhcC---CCH
Q 048269 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN-L------TLSS---IIYGLLARGRLREAYKVVEEIEK---PDI 314 (465)
Q Consensus 248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~------~~~~---li~~~~~~~~~~~a~~~~~~~~~---~~~ 314 (465)
-.+|--.++.-...|+.+...++|+..+.. ++|-. . .|.. .+-.-....+.+.+.++++...+ ...
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk 400 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK 400 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc
Confidence 555666666666667777777777776654 33311 1 1111 11111245667777777766665 233
Q ss_pred hhHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCCchHHHHHHH
Q 048269 315 SLYHGLIKGL----LRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDPLVNFDTIFV 379 (465)
Q Consensus 315 ~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~li 379 (465)
.||..+--.| .++.+...|.+++...+ |..|...+|...|..-..... -.-.+-|-.+|....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 4444433332 35566777777777666 667777666655544322222 112233445666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 380 GGLVKAGKSLDAAKYVERVMNRG-VEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
..=...|+++.|..+|+-+++.. +......|.+.|.--...|.++.|..+++++++..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 66667777777777777776532 11223355566665566788888888888877764
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.7e-10 Score=104.49 Aligned_cols=286 Identities=12% Similarity=-0.037 Sum_probs=236.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 69 CFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
+...|+.....-.+.+...+++.+..++++...+..++....+..-|.++...|+..+-..+=.++.+.- |-.+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 4556788888888999999999999999999999999877788888889999999988888888888763 667888999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 228 (465)
+.--|.-.|+.++|.++|.+...-.+.-...|-.+...|+-.|..+.|+..+....+. ++-..-.+.-+.--|.+.++.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 9988888899999999999977322444568999999999999999999999887663 111112223344457889999
Q ss_pred HHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCHHHH
Q 048269 229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----G--IEADNLTLSSIIYGLLARGRLREA 302 (465)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~~~~~~~~~a 302 (465)
+.|.++|.+.. ++-|.|+...+-+.-.....+.+.+|..+|+..... + ......+++.|..+|.+.+++++|
T Consensus 397 kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999886 557878999999888888899999999999887621 1 112456688999999999999999
Q ss_pred HHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 048269 303 YKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360 (465)
Q Consensus 303 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 360 (465)
+..+++... .+..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999998876 788999999999999999999999999998 78999988888887663
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=6.6e-11 Score=112.39 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269 209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS 288 (465)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (465)
.|++.+|.+++.+-.-+|+.+.|..++.+|.+.|.+. +.+-|-.++-+ .++...+..++.-|.+.|+.|+..|+..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 4899999999999999999999999999999999887 66655555544 7888899999999999999999999877
Q ss_pred HHHHHHhcC
Q 048269 289 IIYGLLARG 297 (465)
Q Consensus 289 li~~~~~~~ 297 (465)
.+-.+.+.|
T Consensus 277 yvip~l~N~ 285 (1088)
T KOG4318|consen 277 YVIPQLSNG 285 (1088)
T ss_pred HHHhhhcch
Confidence 666655543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=3.1e-10 Score=110.62 Aligned_cols=249 Identities=15% Similarity=0.063 Sum_probs=164.9
Q ss_pred CCChHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---------cCCCHHHHHHHHHHhh
Q 048269 105 LVNDKTFKIALMTLAE-----VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC---------QRKLVVEAKYLILKLS 170 (465)
Q Consensus 105 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~m~ 170 (465)
+.+...|...+++-.. .+.+++|+..|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455556555555322 134678888888888764 334555655554443 2345788888888887
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcch
Q 048269 171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLST 250 (465)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 250 (465)
.-.+.+..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+. .|.+...
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 5556778888888888888888999999888888764 334667778888888889999999888888766 4423334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhc
Q 048269 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRL 327 (465)
Q Consensus 251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~ 327 (465)
+..++..+...|++++|...++++.....+-++..+..+..++...|+.++|...+.++.. |+ ....+.+...|+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 4445555667788888888888877653222455566777788888999998888888766 33 23344445556666
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q 048269 328 RRAREATQVFREMIKR-GCEPTMHTYIMLLQGH 359 (465)
Q Consensus 328 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~ 359 (465)
| ++|...++.+.+. ...+....+..++.++
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 6 4777767666543 2333333334444443
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.9e-10 Score=99.69 Aligned_cols=198 Identities=12% Similarity=-0.013 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4566677777788888888888888777653 445666777777777788888888888777643455666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 188 CDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
...|++++|.+.++...+... ......+..+..++...|++++|.+.+++.... .|.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 777888888888877766422 123445666677777777777777777777654 33245566677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 309 (465)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777776665 2334455555566666667777666665544
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1.1e-11 Score=117.51 Aligned_cols=251 Identities=12% Similarity=0.136 Sum_probs=134.6
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
++-.+...|+.|+..||..+|.-||..|+++.|- +|.-|. ...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3344455556666666666666666666665555 555555 555555555666665555555554443
Q ss_pred CCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HcCCC-------------CCCcchHHHHHHHHHhcCChHHHH
Q 048269 209 EPSIDVVDKMIETFFKINKDDE---AMKVFQMMR----VKRMD-------------DLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~-------------~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
.|...+|+.|..+|...|+... +.+-+..+. ..|+. |.....-...+......|.++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666655433 111111111 11111 101111222233334445555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269 269 TMLEEMFKRGIEADNLTLSSIIYGLLAR-GRLREAYKVVEEIEK-PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCE 346 (465)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 346 (465)
+++..+-.....- +... +++-+... ..+++-........+ +++.+|.+++.+-...|+.+.|..++.+|.+.|++
T Consensus 160 kll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 5554443221110 1111 13322222 233444444444444 88888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269 347 PTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421 (465)
Q Consensus 347 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (465)
.+..-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|
T Consensus 237 ir~HyFwpLl~g--------------------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG--------------------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cccccchhhhhc--------------------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 877777666543 3556666666666666666666666666665555533
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1.1e-12 Score=82.18 Aligned_cols=50 Identities=32% Similarity=0.643 Sum_probs=39.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK 224 (465)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 224 (465)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=8.4e-09 Score=97.43 Aligned_cols=300 Identities=14% Similarity=0.091 Sum_probs=206.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC--
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR-- 156 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 156 (465)
-....+...|++++|++.++.-...-+............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345567889999999999987554433445677888899999999999999999999986 34444445555555222
Q ss_pred ---CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 157 ---KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL-IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 157 ---~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
.+.+...++|+++.... |.......+.-.+.....+ ..+...+..+...|+++ +|+.+-..|....+.+-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 35777888898887333 3333333332222222233 34556677777788653 4566666666666666666
Q ss_pred HHHHHHHHc----C---------CCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 048269 233 KVFQMMRVK----R---------MDDLGL--STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLAR 296 (465)
Q Consensus 233 ~~~~~m~~~----~---------~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 296 (465)
+++..+... + ..|++. .++.-+...|...|++++|+.++++.++. .|+ +..|..-.+.+-+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 666665432 1 122233 24466677888999999999999999987 344 77888888999999
Q ss_pred CCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchH
Q 048269 297 GRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVN 373 (465)
Q Consensus 297 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~ 373 (465)
|++.+|.+.++.... .|-..-+.....+.+.|+.++|.+++...-+.+..|-. ...-+++. -
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~--~L~~mQc~-------------W 306 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS--NLNDMQCM-------------W 306 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc--CHHHHHHH-------------H
Confidence 999999999999888 55566667788889999999999999998776653322 11122221 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.......+|.+.|++..|++.|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 113456788999999999887776653
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2e-12 Score=81.07 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 048269 370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN 419 (465)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (465)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999975
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=2.5e-10 Score=96.52 Aligned_cols=236 Identities=7% Similarity=-0.063 Sum_probs=197.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
++.=-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-...++-|+....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3333467889999999999999999988876 67888888899999999999999999999887778888878888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. ++..|+.+.-+|.-.+++|-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhhcchhh
Confidence 999999999999999988763 346667777788888999999999999999999887 78899999999999999999
Q ss_pred HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 267 AYTMLEEMFKRGIEAD--NLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 267 a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
++..|......-..|+ ..+|-.+-......|++..|.+.|+-... .+...+|.|.-.-.+.|++++|..++....
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999988876544444 33455666667788999999999998877 455678888888889999999999999887
Q ss_pred HcCCCCCH
Q 048269 342 KRGCEPTM 349 (465)
Q Consensus 342 ~~~~~p~~ 349 (465)
. +.|+.
T Consensus 457 s--~~P~m 462 (478)
T KOG1129|consen 457 S--VMPDM 462 (478)
T ss_pred h--hCccc
Confidence 3 45654
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.2e-08 Score=91.10 Aligned_cols=354 Identities=10% Similarity=0.034 Sum_probs=238.4
Q ss_pred ChhHHHHHHHHHhhcCCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH-
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHN-SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN- 129 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~- 129 (465)
.++.|+.++.|++... || +..|.....+|...|+|++..+--....+.++.-..++..-.+++-..|++.+|+.
T Consensus 130 kY~eAIkyY~~AI~l~----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELC----PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cHHHHHHHHHHHHhcC----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 6789999999995544 56 88899999999999999998888777776655333344444455555555554433
Q ss_pred ---------------------HHHH---------hhhCC--CCCCHHHHHHHHHHHHcC--------C------------
Q 048269 130 ---------------------FFHI---------MNDCG--CEYSLEMLNKVVKTLCQR--------K------------ 157 (465)
Q Consensus 130 ---------------------~~~~---------~~~~~--~~~~~~~~~~ll~~~~~~--------~------------ 157 (465)
+++. +.+.+ +-|+....++....+... +
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 2211 11111 234554444444433211 1
Q ss_pred --------CHHHHHHHHHHhh----cCCCCC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269 158 --------LVVEAKYLILKLS----EWIKPN---------EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD 216 (465)
Q Consensus 158 --------~~~~a~~~~~~m~----~~~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 216 (465)
.+.+|...+.+-. .....+ ..+...-..-+.-.|+...|..-|+..++....+ ...|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHH
Confidence 1112222222211 001111 1111111222344588888999999988864332 23377
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048269 217 KMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR 296 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 296 (465)
-+..+|....+.++..+.|+...+. .|.++.+|..-...+.-.++++.|..=|++.+..... +...|.-+.-+..+.
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHH
Confidence 7888899999999999999998755 6668889999999999999999999999998876322 456677777777789
Q ss_pred CCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHhhcccCCCCCC
Q 048269 297 GRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTY----IMLLQGHLGKRGRKGPD 369 (465)
Q Consensus 297 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~~~ 369 (465)
++++++...|++..+ ..+..|+.....+...++++.|.+.|+..++. .|+.... ..++.
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~------------ 507 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH------------ 507 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh------------
Confidence 999999999999988 45678999999999999999999999998854 3331100 00111
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
-.++.. .=.+++..|..++++..+ +.|- ...|..|...-.+.|+.++|.++|++-...
T Consensus 508 ------Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 508 ------KALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ------hhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 011111 122899999999999987 4553 448889999999999999999999987654
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=2.8e-08 Score=91.97 Aligned_cols=387 Identities=11% Similarity=0.072 Sum_probs=234.0
Q ss_pred HHHHHHhcCCC-ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 048269 41 FFLQICNNFPL-SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA 119 (465)
Q Consensus 41 ~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (465)
.+...+..+.. +++..+.+.+.++.+.+ -...+....--.+...|+-++|.+......+.++-+...|+.+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~---eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFP---EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCC---ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34455544443 66677777777644222 244444444445566677888888887777777777777777777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 048269 120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKI 199 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 199 (465)
..+++++|++.|......+ +.|...+.-+.-.-++.|+++.....-.++..-.+.....|..+..++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887765 556666666655556667776666665555543455566777777777888888888888
Q ss_pred HHHHHHCC-CCCcHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 200 WNLMTDEG-FEPSIDVVDKMI------ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 200 ~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
+++..+.. -.|+...+.-.. ....++|..+.|.+.+......-+. ....-.+-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--kla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--KLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH--HHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88877654 235555543332 2334567777777777655433111 22233344566778888888888888
Q ss_pred HHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHH-HHHHHhcC--CCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC
Q 048269 273 EMFKRGIEADNLTLSSII-YGLLARGRLREAY-KVVEEIEK--PDISLYHGLIKGLLR-LRRAREATQVFREMIKRGCEP 347 (465)
Q Consensus 273 ~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~-~~~~~~~~--~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p 347 (465)
.+... .||..-|.... .++.+-.+.-++. .+|....+ |....-.-+-..... ..-.+..-.++..+.+.|+++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 88876 45655554443 3443333333333 55555544 111110001001111 122233344555666666655
Q ss_pred CHHHHHHHHHH-------------hhcccC----------CCCCCCchHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269 348 TMHTYIMLLQG-------------HLGKRG----------RKGPDPLVNFDT--IFVGGLVKAGKSLDAAKYVERVMNRG 402 (465)
Q Consensus 348 ~~~~~~~ll~~-------------~~~~~~----------~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (465)
--..+.++..- +....+ ...-+|+...|+ .++..|-+.|+++.|..+++...+
T Consensus 322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-- 399 (700)
T KOG1156|consen 322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-- 399 (700)
T ss_pred hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--
Confidence 33333332221 111111 223366666654 577888899999999999999885
Q ss_pred CCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 403 VEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 403 ~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
..|+.. .|..=.+.+...|+.+.|..++++..+.+
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 467665 66666678888899999999998888775
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.33 E-value=1.7e-07 Score=86.84 Aligned_cols=377 Identities=12% Similarity=0.056 Sum_probs=233.1
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL 105 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 105 (465)
+..+|.+.+...+.-.+..+.-.+-++-+.|.......+..+.+ +.+.|..+.-.+....++++|++.|......+.
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 77888888877777777777656666778888888887554444 788899888888888999999999999988888
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHH
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWL 183 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~l 183 (465)
.+...+.-+.-.-++.|+++.....-..+.+.. +.....|..+..++.-.|+...|..++++.. ....|+...|...
T Consensus 107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 888888777777777788887777777777643 3345556667777777788888888888777 2234665555443
Q ss_pred HH------HHHhcCCHHHHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269 184 IK------GYCDVGDLIEASKIWNLMTDEGFEPSIDV-VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256 (465)
Q Consensus 184 i~------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 256 (465)
.. ...+.|..+.|.+.+..-... ..|... -..-...+.+.+++++|..++..+... .|.+...|..+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH
Confidence 32 233445556655555443321 112221 223344556667777777777776655 4423333333333
Q ss_pred HHHh-cCChH----------------------------------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269 257 WMCK-RGKIS----------------------------------QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301 (465)
Q Consensus 257 ~~~~-~~~~~----------------------------------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 301 (465)
++.+ .+..+ ....++..+.+.|+++ ++..+...|-.-...+-
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHH
Confidence 3321 22222 2223333334444432 22222222222111111
Q ss_pred HHHHHHHhcC------------------CCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 048269 302 AYKVVEEIEK------------------PDISLYH--GLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG 361 (465)
Q Consensus 302 a~~~~~~~~~------------------~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 361 (465)
..++.-.+.. |....|. .++..|-+.|+++.|..+++..++ -.|+..-.-
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly-------- 408 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELY-------- 408 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHH--------
Confidence 1111111111 3444444 456677888999999999988874 356544332
Q ss_pred ccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269 362 KRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438 (465)
Q Consensus 362 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 438 (465)
-.-.+.+...|++++|..++++..+.+ .||..+-..-.....+..+.++|.+++-...+.|.
T Consensus 409 --------------~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 409 --------------LVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred --------------HHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 222345688899999999999998764 46665555666777788899999999988888874
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=2.3e-08 Score=94.56 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=217.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---
Q 048269 114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV--- 190 (465)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~--- 190 (465)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+....+.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 345668889999999999875543 3445566777889999999999999999999965566777777777766322
Q ss_pred --CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHH
Q 048269 191 --GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD-EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQA 267 (465)
Q Consensus 191 --g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 267 (465)
.+.+....+++++.+. -|.......+.-.+..-..+. .+..++..+...|+++ +|+.+-..|......+-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs----lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS----LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHcChhHHHHH
Confidence 3578888999988775 354444433333333323343 4566777778888765 788887777766666666
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhcC
Q 048269 268 YTMLEEMFKR----G----------IEADN--LTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRLR 328 (465)
Q Consensus 268 ~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~ 328 (465)
..++...... + -.|+. .++.-+...|...|++++|.+.+++... |+ +..|..-...+-+.|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 6666665432 1 12333 3445667788899999999999998887 44 567778888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 048269 329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF 408 (465)
Q Consensus 329 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 408 (465)
++.+|.+.++..+.. .+...-.|+-.. ..+.+.|++++|.+++......+..|-..
T Consensus 243 ~~~~Aa~~~~~Ar~L--D~~DRyiNsK~a----------------------Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 243 DLKEAAEAMDEAREL--DLADRYINSKCA----------------------KYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred CHHHHHHHHHHHHhC--ChhhHHHHHHHH----------------------HHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 999999999998854 444444443333 33589999999999999998766544221
Q ss_pred ------hH--HHHHHHHhhccchHHHHHHHHHHHHc------------CCCCchhHHHHHHHHHhHHh
Q 048269 409 ------DY--NKFLHYYSNEEGVVMFEEVGKKLREV------------GLADLADIFQRYGKKMATRE 456 (465)
Q Consensus 409 ------~~--~~ll~~~~~~g~~~~a~~~~~~~~~~------------g~~~~~~~~~~~~~~~~~~~ 456 (465)
.| .....+|.+.|++..|+..+..+.+. .|-.-..++.+|-++++..+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed 366 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWED 366 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHH
Confidence 12 34466788889999888888777655 13333445556665555444
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=6.5e-07 Score=80.12 Aligned_cols=366 Identities=10% Similarity=-0.006 Sum_probs=236.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL-EMLNKVVK 151 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~ 151 (465)
+...|-....-=..++++..|..+|+.....+..+...|-.-+..-.+++....|..+++..... -|-+ ..|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 66677777777777889999999999999887777778888899999999999999999999875 3333 34555555
Q ss_pred HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
+=-..|++..|.++|++-.. ..|+...|.+.|+.=.+-..++.|..+++...-. .|++.+|......=.+.|+...|
T Consensus 150 mEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 66678999999999999662 4799999999999999999999999999999865 59999999999988999999999
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHH----HhcCChHHHHHHHHHHHHCCC----------------------------
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWM----CKRGKISQAYTMLEEMFKRGI---------------------------- 279 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~---------------------------- 279 (465)
..+|+...+. .. +...-..+..++ .++..++.|.-+|+-....-.
T Consensus 227 R~VyerAie~--~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 227 RSVYERAIEF--LG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHH--hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999887654 11 222222333333 344556666666655443311
Q ss_pred ---------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHh---hHHHHHH--------HHHhcCCHH
Q 048269 280 ---------------EADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDIS---LYHGLIK--------GLLRLRRAR 331 (465)
Q Consensus 280 ---------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~li~--------~~~~~~~~~ 331 (465)
+.|-.+|-..++.-...|+.+...++|+.... |... .|.-.|. .=....+.+
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11222333344444455666666666666554 2111 1111111 112345666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----ccC----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 332 EATQVFREMIKRGCEPTMHTYIMLLQGHLG----KRG----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVER 397 (465)
Q Consensus 332 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (465)
.+.++|+..++ -++-...||.-+--.++. ..+ ..|.-|-..+|...|..=.+.+.++....++++
T Consensus 384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666664 123334444332222210 000 455666666666666666666777777777777
Q ss_pred HHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC-CCCchhHHHHHH
Q 048269 398 VMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG-LADLADIFQRYG 449 (465)
Q Consensus 398 m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~~~ 449 (465)
.++ ..| |-.+|.....--...|+.+.|..+++-.++.. ......++.+|.
T Consensus 463 fle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 463 FLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred HHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 665 344 33356555555555677777777776666554 222333444444
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.6e-08 Score=90.74 Aligned_cols=280 Identities=12% Similarity=0.016 Sum_probs=220.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
..........|...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++....|..+.+|-++...|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 3445556667788899999999999998865 778888888888999999988888888888877788899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 188 CDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
...|+..+|.+.|.+.... .|+ ...|-.....|.-.|..++|...+...-+. -|...--+--+.--|.+.+..+.
T Consensus 323 l~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 9999999999999998764 232 467889999999999999999998877653 22122233344556888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----------CCHhhHHHHHHHHHhcCCHHHHHHH
Q 048269 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----------PDISLYHGLIKGLLRLRRAREATQV 336 (465)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~ 336 (465)
|.++|.+.... .+.|+...+.+.-.....+.+.+|...|+.... .-..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999988765 234778888887777788999999999988764 1344578888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048269 337 FREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHY 416 (465)
Q Consensus 337 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 416 (465)
++..+.. .|. +..++.++.-.|...|+++.|++.|.+... +.|+..+...++..
T Consensus 478 ~q~aL~l--~~k----------------------~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 478 YQKALLL--SPK----------------------DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHc--CCC----------------------chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9998854 333 223344455557889999999999999985 78988777777765
Q ss_pred Hhh
Q 048269 417 YSN 419 (465)
Q Consensus 417 ~~~ 419 (465)
+..
T Consensus 532 aie 534 (611)
T KOG1173|consen 532 AIE 534 (611)
T ss_pred HHH
Confidence 543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.1e-09 Score=92.76 Aligned_cols=232 Identities=10% Similarity=-0.013 Sum_probs=194.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
.-+.+...|.+.|-+.+|.+.|+...... +-+.||..+-+.|.+..+++.|+.+|.+-.+. .+-|+.......+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 34678889999999999999999877654 34568999999999999999999999988875 24444444567788888
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (465)
.++.++|.++|+...+..+.++.....+...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999998666778888888888999999999999999999999975 8889999999999999999999999
Q ss_pred HHHHHcCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 236 QMMRVKRMDD-LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 236 ~~m~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
+.....--.| .-...|-.+-......||+..|.+.|+-...++.. +...++.|.-.-.+.|++++|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8877543323 02346777778888899999999999988876433 677888888888999999999999998877
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.9e-08 Score=84.00 Aligned_cols=289 Identities=9% Similarity=-0.003 Sum_probs=213.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+...|...|-.+ ....-++-|+.....+...+...|+.++|+..|++....++-+........-.+.+.|+.+....+.
T Consensus 211 ~hs~a~~t~l~l-e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 211 KHSDASQTFLML-HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred ccchhhhHHHHH-HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 334444555554 5556678899999999999999999999999999988777644433444444556778888888777
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 211 (465)
..+.... .-+...|-.-+......++++.|+.+-++.....+.+...+-.-...+...|++++|.-.|+..+... +-+
T Consensus 290 ~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~r 367 (564)
T KOG1174|consen 290 DYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYR 367 (564)
T ss_pred HHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhh
Confidence 7776532 23444454445555667889999999988774445566666666677888999999999999987752 347
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048269 212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI-DWMC-KRGKISQAYTMLEEMFKRGIEAD-NLTLSS 288 (465)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ 288 (465)
..+|.-|+.+|...|++.+|.-.-+..... -|.+..+.+.+. ..|. .-..-++|.+++++-.+. .|+ ....+.
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~ 443 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNL 443 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHH
Confidence 889999999999999999988777665543 222555555542 2222 223347888888877654 454 345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048269 289 IIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM 349 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 349 (465)
+...+...|..+++..+++.... +|....+.|...+...+.+.+|++.|....+ +.|+.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 77788899999999999999887 9999999999999999999999999999884 35643
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=4.6e-07 Score=83.26 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=32.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CCC-----c-----chHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269 221 TFFKINKDDEAMKVFQMMRVKRMD---DLG-----L-----STYRIVIDWMCKRGKISQAYTMLEEMFKRG 278 (465)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~---~~~-----~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 278 (465)
.+...|++.+|+++++...+-+.. -.| . ..-.-+..++-..|+.++|..+|....+..
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 345668888888888776221100 000 0 012234445667788888888777776654
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1e-08 Score=95.72 Aligned_cols=234 Identities=17% Similarity=0.106 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhh---c---C--
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDC-----G-CEYSLEM-LNKVVKTLCQRKLVVEAKYLILKLS---E---W-- 172 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~---~---~-- 172 (465)
..++..+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++. . |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 357777999999999999999999987764 2 1233333 3457778899999999999999976 1 1
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 048269 173 IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE-----GF-EPSI-DVVDKMIETFFKINKDDEAMKVFQMMRVK---R 242 (465)
Q Consensus 173 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 242 (465)
.+.-..+++.|..+|.+.|++++|...++...+- |. .|.. ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2223567788888999999999998888877541 21 1222 34567778889999999999998875432 1
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-
Q 048269 243 MDD---LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-----G--IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK- 311 (465)
Q Consensus 243 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 311 (465)
..+ .-..+++.|...|.+.|++++|.+++++.... | ..-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 12357999999999999999999999987743 1 222355678888999999999999999987665
Q ss_pred --------CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 312 --------PD-ISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 312 --------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
|+ ..+|..|...|...|+++.|.++.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33 3578899999999999999999988776
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=5.9e-07 Score=83.33 Aligned_cols=305 Identities=10% Similarity=0.012 Sum_probs=187.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--C-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV--N-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK- 148 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 148 (465)
....|..+...+...|+.+.+.+.+....+.... + ..........+...|++++|.+.++...+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3455666667777778888877777766554442 2 2233334456677899999999999888753 444444442
Q ss_pred --HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269 149 --VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226 (465)
Q Consensus 149 --ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 226 (465)
........+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 11222234555566666555223334444555566778888999999999999998864 335667788888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 048269 227 KDDEAMKVFQMMRVKRMDDLGL--STYRIVIDWMCKRGKISQAYTMLEEMFKRGI-EADNLTL-S--SIIYGLLARGRLR 300 (465)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~~~~~~~ 300 (465)
++++|...++........+++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999998877643211122 2355678888999999999999998754322 1112111 1 2233333444333
Q ss_pred HHHHH---HHHhcC--CC-HhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHhhcccCCC
Q 048269 301 EAYKV---VEEIEK--PD-ISLYH--GLIKGLLRLRRAREATQVFREMIKRGCEP---TM---HTYIMLLQGHLGKRGRK 366 (465)
Q Consensus 301 ~a~~~---~~~~~~--~~-~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~---~~~~~ll~~~~~~~~~~ 366 (465)
.+.+. ...... +. ...+. ....++...|+.+.|..++..+......+ .. .+-..++.
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~--------- 313 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE--------- 313 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH---------
Confidence 22222 111111 11 11222 45667788899999999999987643221 11 11111222
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 367 GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 367 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
..++...|++++|.+.+.+...
T Consensus 314 ------------A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 314 ------------ALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred ------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 2345789999999999998875
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1e-08 Score=95.72 Aligned_cols=237 Identities=13% Similarity=0.065 Sum_probs=178.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C--CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRR-----R--LVN-DKTFKIALMTLAEVRELKKMVNFFHIMND-----CG-- 138 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-- 138 (465)
..+...+...|...|+++.|..+++...+. | .+. ....+.+...|...+++.+|..+|+.+.. .|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 455666999999999999999999988765 2 222 23455677889999999999999998876 22
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh----c---CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 048269 139 CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS----E---WIKPNE-IAYGWLIKGYCDVGDLIEASKIWNLMTDE---G 207 (465)
Q Consensus 139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~---~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g 207 (465)
.+.-..+++.|..+|.+.|++++|..++++.. . ...|.+ ..++.+...|+..+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12234567778889999999999988888754 1 122222 34667778888999999999999877652 1
Q ss_pred CCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 048269 208 FEP----SIDVVDKMIETFFKINKDDEAMKVFQMMRVKR------MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK- 276 (465)
Q Consensus 208 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 276 (465)
+.+ -..+++.|...|.+.|++++|.++++...... ..+.....++.+...|.+.+..+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 24689999999999999999999999876541 1221244678888999999999999988876543
Q ss_pred ---CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269 277 ---RGI--EADNLTLSSIIYGLLARGRLREAYKVVEEIE 310 (465)
Q Consensus 277 ---~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 310 (465)
.|. +-...+|..|...|...|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 2246788999999999999999999987765
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=7e-08 Score=86.28 Aligned_cols=219 Identities=7% Similarity=-0.049 Sum_probs=145.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAH--NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (465)
..+.++..+..++... ...| ....|..+...+.+.|++++|...|++..+.++.+..+|+.+...+...|++++|+.
T Consensus 41 ~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456777777763222 2222 245677778888888999999999999888888778888999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
.|+...+.. +-+..+|..+..++...|++++|.+.|++.....+.+.. .......+...++.++|...|....... .
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~ 196 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-D 196 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-C
Confidence 998888754 345677777888888889999999998887733233331 2222223445678888888887655332 2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR-----MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 278 (465)
|+...+ .+. ....|+...+ +.+..+.+.. ..|....+|..+...+.+.|++++|...|++..+.+
T Consensus 197 ~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 332222 222 2334554443 3444443211 112134577888888888888888888888888764
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=4.3e-08 Score=87.60 Aligned_cols=149 Identities=10% Similarity=-0.126 Sum_probs=87.0
Q ss_pred CChhHHHHHHHHHhhCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048269 88 RNIDLFWETLQEMGRRRLV----NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK 163 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 163 (465)
+..+.++.-+.++...... ....|..+...+.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455566666666544331 12346666666667777777777777666654 345666666777777777777777
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 164 YLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 164 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
..|++.....+-+..+|..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7777666433445566666666666667777777777666654 2332211122222334556667776665543
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.8e-08 Score=90.07 Aligned_cols=219 Identities=10% Similarity=0.050 Sum_probs=119.9
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 048269 50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129 (465)
Q Consensus 50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (465)
.+++..|..-|+.++..++. +...|-.+..+|....+.++.+..|+...+.++.++.+|..-.+...-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~---~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA---FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc---cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 33555666666665444433 222355555666666666666666666666666555566666666666666666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 048269 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG-- 207 (465)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 207 (465)
=|+...+.. +-+...|-.+..+..+.+.++++...|++....+|--+..|+.....+...++++.|.+.|+...+.-
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 666666543 33444454455555556666666666666665556566666666666666666666666666665421
Q ss_pred ---CCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 208 ---FEPSIDVV--DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 208 ---~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
+..+...+ -+++-. --.+++..|.+++++..+. .|.....|..|...-.+.|+.++|+++|++..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111111 111111 1225555666666655533 44445556666666666666666666665543
No 76
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3e-07 Score=79.21 Aligned_cols=244 Identities=7% Similarity=-0.029 Sum_probs=151.6
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++...|..+++.. .+.+-.-...+--.+...+.+.|++++|...+.-+...+-++...+..+..++.-.|.+.+|..+
T Consensus 36 rDytGAislLefk--~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFK--LNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHh--hccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3778888888885 33332222344455677888999999999999998887767777777777777778899998887
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
-.... .++.....+++..-+.++-++-..+.+.+.. ...--.+|.+.....-.+++|++++...... .|
T Consensus 114 ~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ 182 (557)
T KOG3785|consen 114 AEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NP 182 (557)
T ss_pred HhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Ch
Confidence 65443 3444455566666777877777776666651 1122334445555556788899999888765 35
Q ss_pred cHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc--CCh-----------------------
Q 048269 211 SIDVVDKMI-ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR--GKI----------------------- 264 (465)
Q Consensus 211 ~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--~~~----------------------- 264 (465)
+-...|.-+ -+|.+..-++-+.+++.-...+ .|.++.+.|..+....+. |+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 554444433 4566777777788887777655 442444444433333222 111
Q ss_pred ----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC
Q 048269 265 ----------SQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPD 313 (465)
Q Consensus 265 ----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 313 (465)
+.|++++--+.+. -+..-..|+-.|.+.+++++|..+.+++...+
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Ptt 315 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTT 315 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCC
Confidence 1222222222111 11222345556889999999999988876633
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.2e-07 Score=76.93 Aligned_cols=187 Identities=13% Similarity=-0.063 Sum_probs=82.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH
Q 048269 114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL 193 (465)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 193 (465)
+.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++..+-.+-+..+.|....-+|..|.+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3344444444444444444444433 233344444444444444444444444444422333444444444444444444
Q ss_pred HHHHHHHHHHHHCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 194 IEASKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
++|...|+.....--- --..+|..+.-+..+.|+++.|.+.|+...+. .|....+...+.....+.|++-.|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 4444444444432110 11234444444444455555555555444433 22233344444444445555555555544
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269 273 EMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304 (465)
Q Consensus 273 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (465)
.....+. ++..+.-..|+.-...|+.+.+.+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 4444433 344444444444444444444443
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=8.5e-07 Score=82.26 Aligned_cols=262 Identities=7% Similarity=-0.063 Sum_probs=143.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKI---ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
...+...|++++|.+.+++..+..+.+...+.. ........+....+.+.+..... ..+........+...+...|
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcC
Confidence 445566778888888888777766555444442 11111223444455555444111 11222334445556677788
Q ss_pred CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcH--HHHHHHHHHHHhcCCHHHHHHH
Q 048269 158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPSI--DVVDKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~ 234 (465)
++++|...+++.....+.+...+..+...+...|++++|...++......- .|+. ..|..+...+...|++++|.++
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888887754466667777777788888888888888877765421 1222 3445677777888888888888
Q ss_pred HHHHHHcCCCCCCcchH-H--HHHHHHHhcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 235 FQMMRVKRMDDLGLSTY-R--IVIDWMCKRGKISQAYTM--LEEMFKRGI--EADNLTLSSIIYGLLARGRLREAYKVVE 307 (465)
Q Consensus 235 ~~~m~~~~~~~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 307 (465)
+++.......+...... + .++.-+...|..+.+.++ +........ ............++...|+.+.|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88765332111011111 1 223333334433333332 111111110 1111222245556677788888888887
Q ss_pred HhcC---C---CHh----hHHHHHH--HHHhcCCHHHHHHHHHHHHHc
Q 048269 308 EIEK---P---DIS----LYHGLIK--GLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 308 ~~~~---~---~~~----~~~~li~--~~~~~~~~~~a~~~~~~m~~~ 343 (465)
.+.. . ... +-..++. ++...|+.++|.+.+.+....
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7765 2 111 1111222 345778888888888877643
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=1.8e-07 Score=75.93 Aligned_cols=198 Identities=8% Similarity=-0.071 Sum_probs=160.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
....|.-.|.+.|++..|.+-+++..+.++.+..+|..+...|.+.|..+.|.+.|+...+.. +-+-.+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 345567788899999999999999999888888889999999999999999999999888865 5567788888888889
Q ss_pred CCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048269 156 RKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMK 233 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 233 (465)
.|.+++|...|++.. .....-..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999877 3344455678888888888999999999999988763 2245567788888889999999998
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 234 VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.++.....+. + +....-.-|..-...|+.+.+.++=..+.+.
T Consensus 195 ~~~~~~~~~~-~-~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-A-QAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877654 5 7777777778888888888887776666654
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=3.1e-06 Score=78.76 Aligned_cols=356 Identities=13% Similarity=0.150 Sum_probs=220.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----------------------HHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE----------------------LKKMVNFF 131 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~ 131 (465)
...|++|.+.|.+.|.+++|.++|++..+.-. +..-|..+.+.|++... ++-...-|
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 46799999999999999999999999876532 33335555555443321 22233334
Q ss_pred HHhhhCC-----------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC------HHhHHHHHHHHHhcCCHH
Q 048269 132 HIMNDCG-----------CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN------EIAYGWLIKGYCDVGDLI 194 (465)
Q Consensus 132 ~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~li~~~~~~g~~~ 194 (465)
+.+...+ -+.++..|..-+.. ..|+..+-...|.+....+.|. ...|..+.+.|-..|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4333321 01223333332222 3466777788888877444443 346888899999999999
Q ss_pred HHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C------CCcchHHHHH
Q 048269 195 EASKIWNLMTDEGFEPS---IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD----------D------LGLSTYRIVI 255 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~------~~~~~~~~li 255 (465)
.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++.+......-. | .+...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999987544322 456666667777788899999888776432111 1 1223455666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCH-hhHHHHHHHHHh---c
Q 048269 256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDI-SLYHGLIKGLLR---L 327 (465)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~li~~~~~---~ 327 (465)
+.--..|-++....+|+.+....+. ++.........+....-++++.+++++-.. |++ ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 6666778889999999999887654 555554455556677778999999998776 544 467776665554 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhcccC------------CCCCCCc--hHHHHHHHHHHHhcCCHHHHH
Q 048269 328 RRAREATQVFREMIKRGCEPTMHTYIMLL-QGHLGKRG------------RKGPDPL--VNFDTIFVGGLVKAGKSLDAA 392 (465)
Q Consensus 328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~------------~~~~~~~--~~~~~~li~~~~~~g~~~~A~ 392 (465)
...+.|..+|++.++ |++|...-+..++ .-+-..-| ..++++. -..||..|.--...=......
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 468999999999998 7777544333333 22222222 2222322 235666665555444455566
Q ss_pred HHHHHHHhCCCCCCHhhHHH---HHHHHhhccchHHHHHHHHHHHHc
Q 048269 393 KYVERVMNRGVEVPRFDYNK---FLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
.+|++.++. -|+...-.. +...-.+.|..+.|..++..-.+.
T Consensus 643 ~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 643 EIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 666666653 455443222 222234457777777777666655
No 81
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.9e-07 Score=77.41 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=145.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-HHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK-VVKT 152 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~ 152 (465)
..-+++.+..+.+..++++|++++..-.++++.+....+.+..+|....++..|-..|+++-.. .|...-|.. -...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3346777777888889999999998888888778888899999999999999999999998774 566655543 3455
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG--YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 230 (465)
+.+.+.+..|+.+...|... ++...-..-+.+ ....+|+..+..++++....| +..+.+.......+.|+++.
T Consensus 88 LY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 66788899999998888732 322222222222 235688888888888876432 55555666666778899999
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE 280 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 280 (465)
|.+-|+...+-+..- ....|+..+. ..+.++.+.|++...++++.|++
T Consensus 163 AvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 999998887765444 4567776554 45678899999999998887754
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9.1e-06 Score=71.77 Aligned_cols=259 Identities=14% Similarity=0.074 Sum_probs=134.5
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcc
Q 048269 171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI-DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS 249 (465)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 249 (465)
..++-|+.....+.+.+...|+.++|+..|+..+.. .|+. .......-.+.+.|+++....+...+....- - +..
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~-ta~ 301 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-Y-TAS 301 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-c-chh
Confidence 445555555555556666666666666555555443 1211 1111112223344555554444444432210 0 222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHh
Q 048269 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLR 326 (465)
Q Consensus 250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 326 (465)
.|-.-........+++.|+.+-++.++.+.. +...|-.-...+...++.++|.-.|+.... -+...|.-|+.+|..
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 2333333333444555555555555443211 222333333344555555555555555444 345555555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhcccC---------CCCCC--Cc-hHHHHHHHHHHHhcCCHHHHHH
Q 048269 327 LRRAREATQVFREMIKRGCEPTMHTYIMLL-QGHLGKRG---------RKGPD--PL-VNFDTIFVGGLVKAGKSLDAAK 393 (465)
Q Consensus 327 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~---------~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 393 (465)
.|.+.+|.-+-++..+. +.-+..+...+- ..|+-... .++++ |+ ....+.+...+...|..+.++.
T Consensus 381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 55555555444443322 112222222210 11110000 22222 22 2334556667789999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 394 YVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
++++... ..||....+.|...+...+.++++.+.+....+.+
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999886 57999999999999999999999999999888764
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.02 E-value=1.9e-05 Score=73.70 Aligned_cols=366 Identities=10% Similarity=0.095 Sum_probs=198.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG------CEYSLEMLN 147 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 147 (465)
...|...+......|-++-++.++++..+..+ ..-+--+..+++.+++++|-+.+....... .+.+-..|.
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P---~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAP---EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhcCH---HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 34444555555555556666666666555432 234555666667777777777666654321 133444555
Q ss_pred HHHHHHHcCCCHHHH---HHHHHHhhcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269 148 KVVKTLCQRKLVVEA---KYLILKLSEWIKPN--EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF 222 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a---~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 222 (465)
-+-+..++.-+.-.. ..++..+.. .-+| ...|+.|.+.|.+.|.+++|.++|++..+. ..+..-|+.+.++|
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~-rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIR-RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcc-cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHH
Confidence 555555554333222 223333321 1223 356889999999999999999999988775 33444455555554
Q ss_pred HhcC----------------------CHHHHHHHHHHHHHcC----------CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269 223 FKIN----------------------KDDEAMKVFQMMRVKR----------MDDLGLSTYRIVIDWMCKRGKISQAYTM 270 (465)
Q Consensus 223 ~~~g----------------------~~~~A~~~~~~m~~~~----------~~~~~~~~~~~li~~~~~~~~~~~a~~~ 270 (465)
+.-. +++....-|+.+...+ -.|.++..|..-.. ...|+..+....
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 4321 1222333444443321 11223333433332 235667777888
Q ss_pred HHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCH-------hhHHHHHHHHHhcCCHHHHHHHH
Q 048269 271 LEEMFKRGIEA------DNLTLSSIIYGLLARGRLREAYKVVEEIEKPDI-------SLYHGLIKGLLRLRRAREATQVF 337 (465)
Q Consensus 271 ~~~m~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~ 337 (465)
|.+..+. +.| -...|..+...|-+.|+++.|..+|++..+.+. .+|..-...=.++.+++.|+++.
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8887764 222 234577888899999999999999999988332 23444444455678899999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcccC--CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------
Q 048269 338 REMIKRGCEPTMHTYIMLLQGHLGKRG--RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV------------ 403 (465)
Q Consensus 338 ~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------ 403 (465)
+.... .|.... +..+ .... +..+..+...|..+++.--..|-++....+++++.+..+
T Consensus 449 ~~A~~---vP~~~~----~~~y-d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf 520 (835)
T KOG2047|consen 449 RRATH---VPTNPE----LEYY-DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF 520 (835)
T ss_pred Hhhhc---CCCchh----hhhh-cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77753 333221 1111 1000 111112233444444444455555555555555543221
Q ss_pred ----------------------CCCHh-hHHHHHHHHhhc---cchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHhHH
Q 048269 404 ----------------------EVPRF-DYNKFLHYYSNE---EGVVMFEEVGKKLREVGLADL--ADIFQRYGKKMATR 455 (465)
Q Consensus 404 ----------------------~p~~~-~~~~ll~~~~~~---g~~~~a~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~ 455 (465)
-|+.. .|+..+.-+.+. ...+.|..+|++.++ |-+|. ..+|-.|....+.-
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~ 599 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEH 599 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh
Confidence 23433 566555555442 356777777777776 32222 23445555555544
Q ss_pred hh
Q 048269 456 ER 457 (465)
Q Consensus 456 ~~ 457 (465)
+.
T Consensus 600 GL 601 (835)
T KOG2047|consen 600 GL 601 (835)
T ss_pred hH
Confidence 43
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=7.5e-06 Score=77.87 Aligned_cols=207 Identities=10% Similarity=0.060 Sum_probs=133.9
Q ss_pred cCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHH
Q 048269 66 AQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY-SLE 144 (465)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 144 (465)
....+..++..|..+.-++.+.|+++.+.+.|++....-......|..+...+...|.-..|+.+++.-....-.| +..
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3345667999999999999999999999999999876655667789999999999999999999988765533223 444
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHhhc--C---CCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCC
Q 048269 145 MLNKVVKTLC-QRKLVVEAKYLILKLSE--W---IKPNEIAYGWLIKGYCDV-----------GDLIEASKIWNLMTDEG 207 (465)
Q Consensus 145 ~~~~ll~~~~-~~~~~~~a~~~~~~m~~--~---~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g 207 (465)
.+-..-..|. +.+..++++.+-.+... + -......|..+.-+|... ....++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4443334444 34566666655555441 1 112223344443333321 12345666777776643
Q ss_pred C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 208 F-EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 208 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
. .|+...| +.--|+..++.+.|.+..++..+.+..- +...|..+.-.+...+++.+|+.+.+...
T Consensus 475 ~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~-~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 475 PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGD-SAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 2333333 3333556677888888888877764444 67777777777777788888877776554
No 85
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=1.1e-05 Score=73.65 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcccC---------
Q 048269 299 LREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP-TMHTYIMLLQGHLGKRG--------- 364 (465)
Q Consensus 299 ~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~--------- 364 (465)
.+.....++++.. .-.-+|..++..-.+..-...|..+|.+..+.+..+ ....+..++..+|.+..
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 4455555555554 333457777777777888888999999998888777 77788888888877666
Q ss_pred -CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 365 -RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR--FDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 365 -~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
-+.+..++..-...+.-+...|+-..|..+|++....++.|+. .+|..+|.--++-|+...+.++-+++...
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 2334444555578888899999999999999999998777765 49999999999999999999998888765
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.3e-05 Score=69.37 Aligned_cols=203 Identities=15% Similarity=0.133 Sum_probs=128.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI-----ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR 252 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 252 (465)
.+-..|+-.|.+.+++++|..+.+++.- ..|-......++ .-........-|.+.|+..-..+..-.+...-.
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 3445566678899999999988877632 122222222222 222223345667777776665555543444566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHH-HHHHHHhcC
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHG-LIKGLLRLR 328 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-li~~~~~~~ 328 (465)
++..++.-..++++++-+++.....-..-|.. .-.+..+++..|.+.+|+++|-.+.. .|-.+|.. |.++|.+.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence 77777778888999999888887764443333 34577889999999999999998887 45566655 456788999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 048269 329 RAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF 408 (465)
Q Consensus 329 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 408 (465)
.++.|++++-++ ..+.+..+...+|.- -|.+++.+--|.+.|+.+.. ..|++.
T Consensus 443 kP~lAW~~~lk~---~t~~e~fsLLqlIAn----------------------~CYk~~eFyyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 443 KPQLAWDMMLKT---NTPSERFSLLQLIAN----------------------DCYKANEFYYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred CchHHHHHHHhc---CCchhHHHHHHHHHH----------------------HHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence 999998887665 333334443333332 23566666666666666554 344444
Q ss_pred hH
Q 048269 409 DY 410 (465)
Q Consensus 409 ~~ 410 (465)
-|
T Consensus 496 nW 497 (557)
T KOG3785|consen 496 NW 497 (557)
T ss_pred cc
Confidence 33
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.3e-07 Score=83.41 Aligned_cols=246 Identities=16% Similarity=0.107 Sum_probs=150.7
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 160 (465)
+-+.-.|++..++.-.+ ....+. ........+.+++...|+++.++ .++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445677777775555 222222 23345666778888888876543 4444433 566665555555444445566
Q ss_pred HHHHHHHHhh-cCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 161 EAKYLILKLS-EWIK-PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 161 ~a~~~~~~m~-~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 238 (465)
.++.-+++.. .... .+..........+...|++++|+++++.- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665554 3222 23333333345566678888888877542 35667777888888888888888888888
Q ss_pred HHcCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---
Q 048269 239 RVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--- 311 (465)
Q Consensus 239 ~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 311 (465)
.+. . +..+...+..++.. .+.+.+|..+|+++... ..+++.+.+.+..++...|++++|..++.+...
T Consensus 158 ~~~--~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 158 QQI--D--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HCC--S--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred Hhc--C--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 754 2 33344445544432 33688888888887654 456778888888888888888888888888776
Q ss_pred CCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 048269 312 PDISLYHGLIKGLLRLRRA-REATQVFREMIKR 343 (465)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~ 343 (465)
.+..+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4455555666666666766 6667777777644
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.7e-07 Score=85.91 Aligned_cols=245 Identities=12% Similarity=0.041 Sum_probs=181.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 161 (465)
.-+.+.|++.+|.-.|+...+.++-...+|..|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 345788999999999999999998888999999999999999999999999999875 5677888888888999999999
Q ss_pred HHHHHHHhhcCCCC---------CHHhHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 162 AKYLILKLSEWIKP---------NEIAYGWLIKGYCDVGDLIEASKIWNLM-TDEGFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 162 a~~~~~~m~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
|...++.-...-+| +...-.. +.+.....+....++|-++ .+.+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99998886411111 1100000 1222223344555555555 4455557888888999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLARGRLREAYKVVEEIE 310 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 310 (465)
.+.|+..... .|.|...||.|...++...+.++|+..|.+.++. .|. +.+.-.|.-+|.+.|.+++|.+.|-...
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999865 7778899999999999999999999999999876 443 2333445557899999999998887654
Q ss_pred C-------------CCHhhHHHHHHHHHhcCCHHHH
Q 048269 311 K-------------PDISLYHGLIKGLLRLRRAREA 333 (465)
Q Consensus 311 ~-------------~~~~~~~~li~~~~~~~~~~~a 333 (465)
. ++...|..|=.++.-.++.|-+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 3 2234555555555555555533
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.5e-05 Score=75.88 Aligned_cols=349 Identities=10% Similarity=-0.027 Sum_probs=226.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cC-CCCCHHhHHHH
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EW-IKPNEIAYGWL 183 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~-~~~~~~~~~~l 183 (465)
.++..|..+.-+..+.|+++.+.+.|++.... .......|+.+...|...|.-..|..+++.-. .. .++|...+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 36778888999999999999999999998763 34567789999999999999999999998876 22 24455555444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC--CC--CCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCC
Q 048269 184 IKGYCDV-GDLIEASKIWNLMTDE--GF--EPSIDVVDKMIETFFKI-----------NKDDEAMKVFQMMRVKRMDDLG 247 (465)
Q Consensus 184 i~~~~~~-g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~ 247 (465)
-+.|.+. +..++++.+-.+.... |. ......|..+.-+|... ....++.+.+++..+.+ |.|
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d--~~d 477 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD--PTD 477 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC--CCC
Confidence 4555543 6677777766666551 11 12344455555555432 22456778888887663 335
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHH
Q 048269 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGL 324 (465)
Q Consensus 248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~ 324 (465)
+...-.+.--|+-.++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+.... ++ ......-+..-
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 5555555556788899999999999999887677899999999999999999999999987765 22 11111111111
Q ss_pred HhcCCHHHHHHHHHHHHH---------------------cCC-----CC--CHHHHHHHHHHhhcccC------------
Q 048269 325 LRLRRAREATQVFREMIK---------------------RGC-----EP--TMHTYIMLLQGHLGKRG------------ 364 (465)
Q Consensus 325 ~~~~~~~~a~~~~~~m~~---------------------~~~-----~p--~~~~~~~ll~~~~~~~~------------ 364 (465)
...++.++++.....+.. .|. .| ...++..+..-......
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 223444444433332221 000 01 11222222221111110
Q ss_pred ---------------------------------------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048269 365 ---------------------------------------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV 405 (465)
Q Consensus 365 ---------------------------------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 405 (465)
..-.+.....|......+...|.+++|.+.|..... +.|
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP 715 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDP 715 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCC
Confidence 111112223445555566677888888888877775 677
Q ss_pred CHh-hHHHHHHHHhhccchHHHHH--HHHHHHHcCCCCchhHHHHHHHHHhHHhhhhh
Q 048269 406 PRF-DYNKFLHYYSNEEGVVMFEE--VGKKLREVGLADLADIFQRYGKKMATRERRRN 460 (465)
Q Consensus 406 ~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 460 (465)
+.. +..++...+.+.|+...+.. ++..+.+.+.. ....|..+|++++.++....
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHH
Confidence 655 88899999999998888887 99999988754 56677788888888776544
No 90
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=1.7e-06 Score=87.04 Aligned_cols=243 Identities=10% Similarity=0.057 Sum_probs=189.7
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----ChHHHHHHHHHHHhcCCHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-----NDKTFKIALMTLAEVRELKK 126 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 126 (465)
.|..|..+-... ...|+ +...|-..|....+.++.++|.++++++...=-+ -...|.++++.-...|.-+.
T Consensus 1440 ~pesaeDferlv-rssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLV-RSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CCcCHHHHHHHH-hcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHH
Confidence 455666666665 77766 8888999999999999999999999998764211 23478888888888888899
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
..++|+++.+.- -.-.+|..|...|.+.+..++|.++++.|...+......|...+..+.+..+-+.|..++.+..+.
T Consensus 1516 l~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1516 LKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 999999998852 234568889999999999999999999999666677888999999999999999999999988875
Q ss_pred CCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 048269 207 GFEPS---IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD- 282 (465)
Q Consensus 207 g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~- 282 (465)
-|. .......+..-.+.|+.+.+..+|+..... .|.-...|+..|+.=.++|+.+.+..+|++....++.|-
T Consensus 1594 --lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1594 --LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred --cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 333 344455566667889999999999998876 565778999999999999999999999999998877653
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHH
Q 048269 283 -NLTLSSIIYGLLARGRLREAYK 304 (465)
Q Consensus 283 -~~~~~~li~~~~~~~~~~~a~~ 304 (465)
-..|...+..-.+.|+-+.+..
T Consensus 1670 mKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1670 MKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hHHHHHHHHHHHHhcCchhhHHH
Confidence 2344555554445555444443
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2.8e-07 Score=81.28 Aligned_cols=251 Identities=15% Similarity=0.148 Sum_probs=166.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269 116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (465)
+.+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ +.++..+-.|.......+...+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchHH
Confidence 44555688888887666 33322223344555677888899987754 455553447777777666665555455666
Q ss_pred HHHHHHHHHHCCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048269 196 ASKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM 274 (465)
Q Consensus 196 a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 274 (465)
+..-+++....+.. .+..........+...|++++|++++... . +.......+..|.+.++++.|.+.++.|
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~-~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------G-SLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------T-CHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------C-cccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66655554444333 23334444445677889999999988642 2 6778888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 275 FKRGIEADNLTLSSIIYGLLA----RGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP 347 (465)
Q Consensus 275 ~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 347 (465)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+ +++.+.+.+..++...|++++|.+++.+..+. .|
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DP 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cc
Confidence 8763 34555555555443 3479999999999988 77788888999999999999999999998743 44
Q ss_pred CH-HHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCH
Q 048269 348 TM-HTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKS-LDAAKYVERVMNRGVEVPR 407 (465)
Q Consensus 348 ~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~ 407 (465)
+. .+... +|.+....|+. +.+.+++.++... .|+.
T Consensus 233 ~~~d~LaN-----------------------liv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 233 NDPDTLAN-----------------------LIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp CHHHHHHH-----------------------HHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred CCHHHHHH-----------------------HHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 43 22222 33344677777 6677888888863 5553
No 92
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=6e-06 Score=73.89 Aligned_cols=207 Identities=9% Similarity=0.006 Sum_probs=149.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC--HH
Q 048269 84 IGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL--VV 160 (465)
Q Consensus 84 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~ 160 (465)
+...++.++|+.+.+++.+.++.+..+|+.-..++...| ++++++..++.+.+.. +.+..+|+....++.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 444567888999999998888777777777777777777 5788999998888765 4566667766555555665 36
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc---CCH----HHHHH
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI---NKD----DEAMK 233 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~ 233 (465)
++..+++++....+-|..+|+...-++...|+++++++.++++.+.+.. |...|+.....+.+. |.. ++.++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 7788888888666778888988888888889999999999999887643 566676666555444 222 45677
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048269 234 VFQMMRVKRMDDLGLSTYRIVIDWMCKR----GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA 295 (465)
Q Consensus 234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 295 (465)
...++... .|.+...|+-+...+... +...+|...+.+....++ .+......|+..|+.
T Consensus 205 y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 77666655 566888898888888773 334567777777666543 356677777777764
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5e-05 Score=69.59 Aligned_cols=350 Identities=13% Similarity=0.071 Sum_probs=209.4
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
.+.+.|...|..+++.+++ |...|..-..+|...|++++|++=-.+-.+.++.=+..|+....++.-.|++++|+..
T Consensus 16 ~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 3889999999999888876 9999999999999999999998877777666654446899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh--hcCCCCC--------HHhHHHHHHHH----------Hhc
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL--SEWIKPN--------EIAYGWLIKGY----------CDV 190 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m--~~~~~~~--------~~~~~~li~~~----------~~~ 190 (465)
|.+-++.. +.+...++.+..++... . .+.+.|..- ..+..-+ ...|..++..+ ...
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 99988764 45566666676666111 0 001111100 0000001 11122222211 111
Q ss_pred CCHHHHHHHHHH-----HHHCC-------CCC----------------------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 191 GDLIEASKIWNL-----MTDEG-------FEP----------------------SIDVVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 191 g~~~~a~~~~~~-----m~~~g-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
..+..+..++.. +...| ..| -..-...+.++..+..+++.|++.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111110 00001 111 01123556677777778888888877
Q ss_pred HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHh
Q 048269 237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS-------IIYGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~~ 309 (465)
...... - +..-++....+|...|.+..+...-+...+.|.. ...-|+. +..+|.+.++++.+...|.+.
T Consensus 249 ~a~el~--~-~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 249 KALELA--T-DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHhHh--h-hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 776653 2 5556666677777777777776666666555432 1222222 223455566777777777665
Q ss_pred cC----CCHhh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 048269 310 EK----PDISL-------------------------YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHL 360 (465)
Q Consensus 310 ~~----~~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 360 (465)
.. |+... ...=...+.+.|++..|+..|.+++... |+..+..+--.+|
T Consensus 325 Lte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac- 401 (539)
T KOG0548|consen 325 LTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAAC- 401 (539)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHH-
Confidence 44 11111 1111344677899999999999998663 6655444433333
Q ss_pred cccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 361 GKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 361 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
|.+.|.+..|+.-.+...+. .|+.. -|..=..++.-..+++.|.+.+++-++.+
T Consensus 402 ---------------------~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 ---------------------YLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred ---------------------HHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57777777777777766653 44432 44444445555677777777777777765
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=2.7e-05 Score=67.22 Aligned_cols=318 Identities=10% Similarity=-0.007 Sum_probs=172.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML-NKVVK 151 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~ 151 (465)
++.-.--+-..+...|++.+|+..|....+.++.+-.++..-...|...|+...|+.-+....+. +||-..- -.-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 44445567778888899999999999988877666555666667788888888888888888774 5664332 12334
Q ss_pred HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
.+.+.|.++.|..=|+.+.... |+..+ ...++.+.--.++-+. ....+..+.-.|+...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~-~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE-PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQNA 174 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC-CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhhH
Confidence 5778899999999998887221 21111 0111111111111111 11222233445555555
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
++....+.+- .|-+...|..-..+|...|++..|+.=++...+..-. +..++-.+-..+...|+.+.++...++..+
T Consensus 175 i~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555555543 3335555555555555555555555544444333211 333333444445555555555555555555
Q ss_pred --CCHhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHH
Q 048269 312 --PDISLYHGL-------------IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDT 376 (465)
Q Consensus 312 --~~~~~~~~l-------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 376 (465)
||...+-.. +......++|.++++-.+...+..-.....+++ .+.
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~--------------------~~r 311 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYN--------------------GFR 311 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeee--------------------eeh
Confidence 332221110 111233444555555554444332111122222 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 377 IFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
.+-.+|...|++.+|++...+..+ +.|| ..++--=..+|.-..+++.|..-+++..+.+
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 333445666777777777777765 4555 4466666666666677777777776666553
No 95
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=6.2e-07 Score=84.49 Aligned_cols=238 Identities=11% Similarity=0.029 Sum_probs=191.6
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 048269 68 PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN 147 (465)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (465)
++++|-...-..+...+...|-...|..+|++.. .|.-++.+|...|+..+|..+..+..+. +|+...|.
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 3555666666778889999999999999999874 4788899999999999999998888773 79999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 227 (465)
.+.+......-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 9999988888899999999886522 22222223344789999999998877653 3467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 228 DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307 (465)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 307 (465)
++.|.+.|...... .|.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999988754 67678899999999999999999999999999887 4466777777778899999999999999
Q ss_pred HhcC-----CCHhhHHHHHHHHH
Q 048269 308 EIEK-----PDISLYHGLIKGLL 325 (465)
Q Consensus 308 ~~~~-----~~~~~~~~li~~~~ 325 (465)
++.. .|..+-..++....
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHHH
Confidence 8876 44445444544433
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=6.3e-05 Score=79.09 Aligned_cols=322 Identities=13% Similarity=-0.010 Sum_probs=195.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCC-------CCC--HHhHHHHHHH
Q 048269 116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWI-------KPN--EIAYGWLIKG 186 (465)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~--~~~~~~li~~ 186 (465)
......|+++.+...++.+.......+..........+...|+++++..++....... .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3455567777777777665322111222223344455667899999999888765111 111 1122223345
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCcchHHHHHHHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPS----IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD----LGLSTYRIVIDWM 258 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~li~~~ 258 (465)
+...|+++.|...++...+.--..+ ....+.+...+...|++++|...+++........ ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678999999999998876311112 1344566667788999999999988876431111 0123445566778
Q ss_pred HhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC------C--CHhhHHHHHHH
Q 048269 259 CKRGKISQAYTMLEEMFKR----GIE--A-DNLTLSSIIYGLLARGRLREAYKVVEEIEK------P--DISLYHGLIKG 323 (465)
Q Consensus 259 ~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~li~~ 323 (465)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 221 1 223344555667778999999998887654 1 12233445556
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHH-----HHHHhhcccC-----------CCCCCCc----hHHHHHHHHHH
Q 048269 324 LLRLRRAREATQVFREMIKRGCEP-TMHTYIM-----LLQGHLGKRG-----------RKGPDPL----VNFDTIFVGGL 382 (465)
Q Consensus 324 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~-----ll~~~~~~~~-----------~~~~~~~----~~~~~~li~~~ 382 (465)
+...|++++|.+.+.+.....-.. ....+.. .+..+...++ ....... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999999988875431111 1111100 0111111111 0000011 11245677788
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 383 VKAGKSLDAAKYVERVMNR----GVEVPR-FDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
...|++++|...+++.... |..++. .+...+..++.+.|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988752 333322 356667778889999999999999998874
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=7.4e-06 Score=82.72 Aligned_cols=241 Identities=14% Similarity=0.156 Sum_probs=167.8
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 166 ILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-----SIDVVDKMIETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 166 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 240 (465)
|+++..+.|-....|-..|......++.++|.++++++... +.+ -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444334555677777778888888888888888887653 211 123577777777777777788888888876
Q ss_pred cCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC---Hh
Q 048269 241 KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD---IS 315 (465)
Q Consensus 241 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~ 315 (465)
.. . ....|..|...|.+.+..++|.++++.|.+. ..-....|...+..+.+..+.+.|..++.+..+ |. ..
T Consensus 1526 yc-d--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC-D--AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hc-c--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 42 1 2456788888888888888888888888875 224667788888888888888888888887776 43 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 316 LYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYV 395 (465)
Q Consensus 316 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 395 (465)
.....+..-.+.|+.+++..+|+..+..- | .-...|+.+|+.-.++|+.+.+..+|
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ay--P----------------------KRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAY--P----------------------KRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhC--c----------------------cchhHHHHHHHHHHccCCHHHHHHHH
Confidence 33334444567788888888888776441 1 22345666777778999999999999
Q ss_pred HHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 396 ERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 396 ~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
++....++.|-.- .|...+..-.+.|+-+.++.+=.+..+
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999888877432 677777766667776665555444443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=0.00014 Score=71.48 Aligned_cols=289 Identities=11% Similarity=0.075 Sum_probs=154.2
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-C--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-V--NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
.|+......+.++...+-+.+-+++++++.-.+. . +...-+.++-...+. +..++.++.+++...+ .|+.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~i----- 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APDI----- 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chhH-----
Confidence 3666666666777777777777777776654332 1 223444444444443 3344555555554433 2221
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHH--------------------------hHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEI--------------------------AYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------------------~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
...+...+-+++|..+|++.. .+.. .|..+.++-.+.|.+.+|++-|-+
T Consensus 1055 -a~iai~~~LyEEAF~ifkkf~----~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1055 -AEIAIENQLYEEAFAIFKKFD----MNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred -HHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 223334444555555555442 2333 344444444444444444443322
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048269 203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD 282 (465)
Q Consensus 203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (465)
. -|+..|..+++...+.|.|++-.+++...++....| ..-+.||-+|++.+++.+..+++. -|+
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 1 133444455555555555555555444444433222 233344445555554444333321 233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 048269 283 NLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362 (465)
Q Consensus 283 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 362 (465)
......+.+-|...+.++.|.-+|. ++..|..|...+...|++..|.+.-++. .+..||..+--+|...
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhch
Confidence 4444444444444455555544443 4456777777778888888877766554 3567777777777555
Q ss_pred cC-------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 363 RG-------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVM 399 (465)
Q Consensus 363 ~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (465)
.. ...+-....-...++..|-..|-+++-+.+++...
T Consensus 1263 ~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1263 EEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 54 23333445567789999999999999988887654
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.3e-08 Score=57.11 Aligned_cols=32 Identities=31% Similarity=0.622 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 207 GFEPSIDVVDKMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 207 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 238 (465)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.75 E-value=1.4e-08 Score=57.05 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 367 GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398 (465)
Q Consensus 367 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (465)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777778888888888888776
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=2.3e-06 Score=74.15 Aligned_cols=188 Identities=7% Similarity=-0.131 Sum_probs=130.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---H
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL---E 144 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~ 144 (465)
......+..+...+.+.|++++|...|+++....+.++ .++..+..++.+.|++++|+..++.+.+.. +.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 34677888888899999999999999999988766443 467788889999999999999999998753 1122 1
Q ss_pred HHHHHHHHHHcC--------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269 145 MLNKVVKTLCQR--------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD 216 (465)
Q Consensus 145 ~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 216 (465)
++..+..++... |+.++|.+.|+++....+.+...+..+...... .. .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~------~~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HH------HH--------HHHHH
Confidence 344455555544 678889999888874334444343332221110 00 00 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 217 KMIETFFKINKDDEAMKVFQMMRVKRM-DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.+...+.+.|++++|...++....... .|.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556678888999999999988876622 1223567888889999999999999988887765
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=7.2e-06 Score=75.54 Aligned_cols=244 Identities=11% Similarity=0.008 Sum_probs=187.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+...|.-.|+.+++++|+ +...|-.|-......++=..|+..+++..+.++.+..+...|...|...|.-..|+..+
T Consensus 300 ~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 466788888888788887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 132 HIMNDCGCE--------YSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWN 201 (465)
Q Consensus 132 ~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 201 (465)
+.......+ ++...-+. ..+.....+....++|-++. .+..+|+.....|.-.|--.|++++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 888664311 00000000 11122233455667777776 4445888899999999999999999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH---C-
Q 048269 202 LMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK---R- 277 (465)
Q Consensus 202 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~- 277 (465)
...... +-|...||-|...++...+.++|+..|++.++. .|.-+.+...|.-+|...|.+++|.+.|-.... .
T Consensus 455 ~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 455 AALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 998863 336789999999999999999999999999866 674577778888899999999999988866542 2
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048269 278 -----GIEADNLTLSSIIYGLLARGRLREAY 303 (465)
Q Consensus 278 -----~~~~~~~~~~~li~~~~~~~~~~~a~ 303 (465)
+..++...|..|=.++.-.++.+.+.
T Consensus 532 ~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 532 RNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred cccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 11223455666555555555555443
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=7.8e-05 Score=69.09 Aligned_cols=340 Identities=11% Similarity=0.052 Sum_probs=193.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
..-+=++.+.+.|++++|++...++...++.+..++..-+.++++.+++++|+.+.+.-... ..+...+-.=..+..+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 34445678888999999999999999888777889999999999999999999554332210 1111111112334557
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (465)
.+..++|+..++-.. +.+..+...-...+.+.|++++|.++|+.+.+++.. + +...+.+-+.. ...+...
T Consensus 92 lnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a--~~a~l~~- 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLA--VAAALQV- 161 (652)
T ss_pred cccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHH--HHHhhhH-
Confidence 899999999998433 334446666667788999999999999999887543 2 22222221110 0111111
Q ss_pred HHHHHcCCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHCC-------CCCCHH------H-HHHHHHHHHhcCC
Q 048269 236 QMMRVKRMDDLGLSTYRIVI---DWMCKRGKISQAYTMLEEMFKRG-------IEADNL------T-LSSIIYGLLARGR 298 (465)
Q Consensus 236 ~~m~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~------~-~~~li~~~~~~~~ 298 (465)
+.+......| ..+|..+. -.+...|++.+|+++++...+.+ -.-+.. + -.-+...+...|+
T Consensus 162 ~~~q~v~~v~--e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 QLLQSVPEVP--EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HHHHhccCCC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1222222233 23454443 34567899999999999883211 111111 1 1234445678899
Q ss_pred HHHHHHHHHHhcC---CCHhhHHHHHH---HHHhcCC-HH-HHHHHHHHHHHcC-------C---CCCHHHHH-HHHHHh
Q 048269 299 LREAYKVVEEIEK---PDISLYHGLIK---GLLRLRR-AR-EATQVFREMIKRG-------C---EPTMHTYI-MLLQGH 359 (465)
Q Consensus 299 ~~~a~~~~~~~~~---~~~~~~~~li~---~~~~~~~-~~-~a~~~~~~m~~~~-------~---~p~~~~~~-~ll~~~ 359 (465)
-++|..++..+.. +|...-.+... +.....+ ++ .++..++...... + .-.....| .++..+
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877 44433322222 2222221 22 1222222221100 0 01111112 233333
Q ss_pred hcccC-----CCCCCCc--hHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhccchHHHHH
Q 048269 360 LGKRG-----RKGPDPL--VNFDTIFVGGLV--KAGKSLDAAKYVERVMNRGVEVPR--FDYNKFLHYYSNEEGVVMFEE 428 (465)
Q Consensus 360 ~~~~~-----~~~~~~~--~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~ 428 (465)
.+... ....++. ...+.+++.... +...+..|.+++....+. .|.. .+.-..+......|+++.|.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 33322 1222222 334455554433 223577888888887763 3433 355555666778999999999
Q ss_pred HHH
Q 048269 429 VGK 431 (465)
Q Consensus 429 ~~~ 431 (465)
++.
T Consensus 398 il~ 400 (652)
T KOG2376|consen 398 ILS 400 (652)
T ss_pred HHH
Confidence 999
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=5.8e-06 Score=68.78 Aligned_cols=162 Identities=12% Similarity=-0.057 Sum_probs=113.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
|... ..+-..+...|+-+....+..........+....+..+....+.|++..|+..|.+..... ++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 4444 5566666677777777776666555544555666667777777788888887777777654 6777777777777
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
|.+.|++++|..-|.+..+-.+-+....+.|...+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHH
Confidence 7777888877777777664445556667777777777777777777777777654 225666667777777777777777
Q ss_pred HHHHH
Q 048269 233 KVFQM 237 (465)
Q Consensus 233 ~~~~~ 237 (465)
++...
T Consensus 223 ~i~~~ 227 (257)
T COG5010 223 DIAVQ 227 (257)
T ss_pred hhccc
Confidence 76654
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1e-05 Score=68.43 Aligned_cols=315 Identities=12% Similarity=0.036 Sum_probs=207.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHH-HHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYG-WLIKG 186 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~li~~ 186 (465)
..-|.+.+..+.+..+++.|++++..-.++. +.+......+..+|....++..|-..|+++... .|...-|. --...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-HPELEQYRLYQAQS 87 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHH
Confidence 3347788888899999999999998887764 447778888999999999999999999999743 33333332 23455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCCh
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET--FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKI 264 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~ 264 (465)
+.+.+.+..|+++...|... ++...-..-+.+ ....+++..+..++++....+ +..+.+...-...+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccH
Confidence 66778899999999888753 332222222222 234677888888887765322 334444444455689999
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----------------CCHh--------hHH
Q 048269 265 SQAYTMLEEMFKR-GIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----------------PDIS--------LYH 318 (465)
Q Consensus 265 ~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----------------~~~~--------~~~ 318 (465)
+.|.+-|+...+- |.. ....|+..+ +..+.|+++.|.+...++.+ +|+. +-+
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999988775 454 455666554 45577899999998887754 2321 123
Q ss_pred HHHH-------HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhcccC---------CCC-CCCchHHHHHHHH
Q 048269 319 GLIK-------GLLRLRRAREATQVFREMIKR-GCEPTMHTYIMLLQGHLGKRG---------RKG-PDPLVNFDTIFVG 380 (465)
Q Consensus 319 ~li~-------~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~---------~~~-~~~~~~~~~~li~ 380 (465)
.++. .+.+.|+++.|.+.+..|.-+ .-..|+.|.+.+.-.-..... -.+ -+-...||..++-
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLl 318 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLL 318 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHH
Confidence 3333 356789999999999888532 234567777655433222211 112 2234578999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhh-ccchHHHHHHHHHHH
Q 048269 381 GLVKAGKSLDAAKYVERVMNRGVE-VPRFDYNKFLHYYSN-EEGVVMFEEVGKKLR 434 (465)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~ 434 (465)
.||+..-++.|..++.+-...-.+ .+...|+ |+.++.- .-..+++.+-++.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999988765432221 2444444 3444443 456677766666554
No 106
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=2.5e-05 Score=69.91 Aligned_cols=203 Identities=10% Similarity=-0.055 Sum_probs=157.1
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH--HHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVREL--KKMV 128 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 128 (465)
..+.|+...+.++...+. +..+|+..-.++...| +++++++.++++.+.++.+..+|+.....+.+.|+. ++++
T Consensus 52 ~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 668999999999777776 7778887777777877 689999999999999888877888776666666663 6789
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCH----HHHHHHHH
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDL----IEASKIWN 201 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~----~~a~~~~~ 201 (465)
.+++.+.+.. +-|..+|+....++...|+++++++.++++....+.|..+|+.....+.+. |.. ++.+....
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 9998988876 668899999999999999999999999999855577788888777666554 222 46677776
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269 202 LMTDEGFEPSIDVVDKMIETFFKI----NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR 261 (465)
Q Consensus 202 ~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 261 (465)
.+.... +-|...|+-+...+... ++..+|.+++.+.... .|.+......|+..|+..
T Consensus 208 ~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 208 DAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHhh
Confidence 766653 34677788877777763 3456688888887664 444777888889888863
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=2.7e-05 Score=74.73 Aligned_cols=316 Identities=11% Similarity=0.056 Sum_probs=178.3
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------C-CChHHHHHHHHHHHhcC
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--------L-VNDKTFKIALMTLAEVR 122 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~-~~~~~~~~l~~~~~~~~ 122 (465)
+.+.|++-...+ .+..+|..+.+.|.+..+++-|.-.+-.|.... . .+..+-..+.......|
T Consensus 743 ~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 743 SMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred cHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 556666655554 267889999999999999999988887775321 1 11122333344456778
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
.+++|+.+|.+-+.. ..|=..|-..|.+++|.++-+.-- .+ .=..||..-...+-..+|.+.|++.|++
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-Ri-HLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RI-HLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-ce-ehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 889999998887763 334455666777777777655432 11 1123444445555555666666666554
Q ss_pred HHHCCC-------------------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------C----------C
Q 048269 203 MTDEGF-------------------EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK----------R----------M 243 (465)
Q Consensus 203 m~~~g~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~----------~ 243 (465)
.....+ ..|...|......+-..|+.+.|+.+|....+. | -
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 321100 113333333444444456666666666554332 0 0
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH----------CCCCCCHHHHH-------------------------H
Q 048269 244 DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK----------RGIEADNLTLS-------------------------S 288 (465)
Q Consensus 244 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------~~~~~~~~~~~-------------------------~ 288 (465)
.- |......+.+.|-..|++.+|..+|.+... ++. +...+| .
T Consensus 964 sg-d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~ 1040 (1416)
T KOG3617|consen 964 SG-DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGGYAHK 1040 (1416)
T ss_pred cc-cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcchhhhH
Confidence 11 455666778888888888888888776542 221 111111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC--------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048269 289 IIYGLLARGRLREAYKVVEEIEK--------------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM 354 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 354 (465)
.+..|-++|.+.+|+++--+-.+ .|+...+.-...++...++++|..++-..++ |..
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~ 1111 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSG 1111 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHH
Confidence 12224444555555443222111 4556666666677778888888887765542 333
Q ss_pred HHHHhhcccC------------CCCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 355 LLQGHLGKRG------------RKGPDPL----VNFDTIFVGGLVKAGKSLDAAKYVERV 398 (465)
Q Consensus 355 ll~~~~~~~~------------~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (465)
.++.|.+++- .+.-.|+ ......+...|.+.|.+..|-+-|.+.
T Consensus 1112 AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1112 ALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 4444433322 1212222 235667778888999998887776654
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=5.2e-06 Score=71.96 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=124.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHH---hH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL---EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI---AY 180 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~ 180 (465)
....+..+...+...|++++|...|+.+.... +.+. ..+..+..++...|++++|...++++....+.+.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 55677888888899999999999999887753 2222 45677888888999999999999998732232222 44
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchH
Q 048269 181 GWLIKGYCDV--------GDLIEASKIWNLMTDEGFEPSI-DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTY 251 (465)
Q Consensus 181 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 251 (465)
..+..++... |+++.|.+.|+.+.+. .|+. ..+..+..... .. ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH---------HHHH
Confidence 4455555543 6778888888888765 2332 22221111100 00 000 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 252 RIVIDWMCKRGKISQAYTMLEEMFKRGI--EADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 252 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
..+...+.+.|++++|...++...+... +.....+..+..++.+.|+.++|...++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2566779999999999999999987632 22457888999999999999999999988754
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=0.00014 Score=76.43 Aligned_cols=302 Identities=8% Similarity=-0.053 Sum_probs=183.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCC-------CC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----H
Q 048269 78 NRMVDIIGKSRNIDLFWETLQEMGRRRL-------VN--DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL----E 144 (465)
Q Consensus 78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 144 (465)
......+...|+++++...+......-. +. ......+...+...|++++|...++...+.-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445555677888888888876643210 11 112223344556788999999988887653111121 2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh---cCC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-c
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLS---EWI-KP--NEIAYGWLIKGYCDVGDLIEASKIWNLMTD----EGFE--P-S 211 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--~-~ 211 (465)
..+.+...+...|++++|...+++.. ... .+ ...++..+...+...|+++.|...+++... .|.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 34556666777899999988888865 111 11 123455566677888999999888877654 2221 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH--
Q 048269 212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKR--MDD-LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG--IEADNL-- 284 (465)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~-- 284 (465)
...+..+...+...|++++|...+++..... ..+ .....+..+...+...|+.+.|.+.++...... ......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334555666777899999988888765421 111 022344445667778899999988888775421 111110
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHhcCCC---H----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHH
Q 048269 285 TL--SSIIYGLLARGRLREAYKVVEEIEKPD---I----SLYHGLIKGLLRLRRAREATQVFREMIKR----GCEPTMHT 351 (465)
Q Consensus 285 ~~--~~li~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~ 351 (465)
.. ...+..+...|+.+.|...+.....+. . ..+..+..++...|++++|...+++.... |..++ .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~-~- 730 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD-L- 730 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH-H-
Confidence 10 112244456788888888887765521 1 11334566677889999999988887653 21111 1
Q ss_pred HHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048269 352 YIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR 401 (465)
Q Consensus 352 ~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (465)
..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 731 --------------------a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 731 --------------------NRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112233456678999999999999999874
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=1.8e-05 Score=65.99 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269 147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 226 (465)
..+-..+...|+-+....+..+.....+.|....+.+++...+.|++..|...|++..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4455566667777777777777664456666666677888888888888888888877643 567788888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 227 KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV 306 (465)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 306 (465)
+++.|..-|.+..+. .|.++..++.+.-.+.-.|+++.|..++......+.. |...-..+.......|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888877755 4446777888888888888888888888877766433 6666777777778888888888776
Q ss_pred HHhcC
Q 048269 307 EEIEK 311 (465)
Q Consensus 307 ~~~~~ 311 (465)
..-..
T Consensus 226 ~~e~~ 230 (257)
T COG5010 226 VQELL 230 (257)
T ss_pred ccccc
Confidence 65444
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00031 Score=69.27 Aligned_cols=330 Identities=11% Similarity=0.054 Sum_probs=193.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCG--CEYSLEMLN 147 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 147 (465)
|...|+.++.- . -.--.++.++..+.+++ ++...+..+.++...+-..+-+++++.+.-.. +.-+...-|
T Consensus 951 D~~LW~~VL~e---~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 951 DPDLWAKVLNE---E--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred ChHHHHHHHhc---c--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 88899888731 1 11223566777776653 67788889999999999999999999987532 222333445
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------------
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG-------------------- 207 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------------------- 207 (465)
.|+-...+ -+...+.++.+++..-..|+. ...+...+-+++|..+|+..-..+
T Consensus 1026 LLiLtAik-ad~trVm~YI~rLdnyDa~~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efA 1098 (1666)
T KOG0985|consen 1026 LLILTAIK-ADRTRVMEYINRLDNYDAPDI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFA 1098 (1666)
T ss_pred hHHHHHhh-cChHHHHHHHHHhccCCchhH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHH
Confidence 55544444 355677778887762223332 233444455566666665542110
Q ss_pred -CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 048269 208 -FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL 286 (465)
Q Consensus 208 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 286 (465)
---.+.+|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++..+++....+....|. .-
T Consensus 1099 e~~n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id 1169 (1666)
T KOG0985|consen 1099 ERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--ID 1169 (1666)
T ss_pred HhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--ch
Confidence 0113456777777777777777777666432 1667788888888888888888887776666655443 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCC
Q 048269 287 SSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRK 366 (465)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 366 (465)
+.|+-+|++.+++.+..+++ ..||......+..-|...|.++.|.-+|...-... --..|.. -+.-|-+..+..
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a--~La~TLV-~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA--KLASTLV-YLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH--HHHHHHH-HHHHHHHHHHHh
Confidence 56777888888777655443 23777777777777777788777776666542110 0001100 001110111111
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 367 GPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 367 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
.-..+..+|.....+|...+.+.-| +|-...+.....-..-++..|...|-+++...+++.-.
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 2223345555555555544443322 23222233344456677777877888888777776554
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=3.8e-06 Score=66.13 Aligned_cols=106 Identities=8% Similarity=-0.180 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
.+..+...+...|++++|...|+.....++.+..++..+...+.+.|++++|+..|+...+.. +.+...+..+..++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 355567777888888888888888888877777888888888888888888888888888765 5677777778888888
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGW 182 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (465)
.|+.++|+..|+....-.+.+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 888888888888876433444444433
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.59 E-value=0.00033 Score=60.70 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=200.5
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+...|+--|..++..++. +-.++..-...|...|+-..|+.=+....+..+.-..+--.-...+.+.|.++.|..-|
T Consensus 53 Q~sDALt~yHaAve~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hHHHHHHHHHHHHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 445677777776343332 44444555668888888888888888887664421122223345678899999999999
Q ss_pred HHhhhCCCCC--CHHH------------HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269 132 HIMNDCGCEY--SLEM------------LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS 197 (465)
Q Consensus 132 ~~~~~~~~~~--~~~~------------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~ 197 (465)
+......... .... ....+..+...|+...|+.....+.+-.+.|...|..-..+|...|++..|+
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHH
Confidence 9988754211 1111 1233445667899999999999988666888999999999999999999998
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcc-h---HHHH---------HHHHHhcCCh
Q 048269 198 KIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS-T---YRIV---------IDWMCKRGKI 264 (465)
Q Consensus 198 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~---~~~l---------i~~~~~~~~~ 264 (465)
.=++...+.. .-+..++..+-..+...|+.+.++...++..+. .| +.. + |..+ +......++|
T Consensus 210 ~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp-dHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 210 HDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP-DHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc-chhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 8777766543 235566677788888999999999999988765 44 332 1 2111 1223456777
Q ss_pred HHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 265 SQAYTMLEEMFKRGIEADNL---TLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFR 338 (465)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 338 (465)
.++..-.+...+........ .+..+..++...+++.+|++...++.+ .|+.++.--..+|.-..+++.|+.=|+
T Consensus 286 t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 286 TECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78888887777764332233 344566778888999999999998887 347777777888999999999999999
Q ss_pred HHHHc
Q 048269 339 EMIKR 343 (465)
Q Consensus 339 ~m~~~ 343 (465)
...+.
T Consensus 366 ~A~e~ 370 (504)
T KOG0624|consen 366 KALEL 370 (504)
T ss_pred HHHhc
Confidence 98854
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.57 E-value=0.00011 Score=73.64 Aligned_cols=237 Identities=9% Similarity=0.075 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048269 142 SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET 221 (465)
Q Consensus 142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 221 (465)
+...+..|+..+...+++++|.++.+......+-....|-.+...+.+.++...+.-+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence 4455666777777777777777777755432233333333333345555553333222 33334
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269 222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 301 (465)
.....++..+.-+...|...+ .+..++..+..+|-+.|+.+++..+|+++.+.. +-|+...|.+...|+.. ++++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 444445544444444444432 144567777777777777777777777777765 33667777777777777 7777
Q ss_pred HHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcccCCCCCCCchHHHHHHHH
Q 048269 302 AYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH-TYIMLLQGHLGKRGRKGPDPLVNFDTIFVG 380 (465)
Q Consensus 302 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~li~ 380 (465)
|..++.+. +..|...+++..+.++|.++... .|+.. .+..+++...+. .+..--..++-.+..
T Consensus 168 A~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~---~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH---REFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh---hccchhHHHHHHHHH
Confidence 77766543 34466666777778888877754 34332 223333333222 123444556667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHh
Q 048269 381 GLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYS 418 (465)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 418 (465)
.|-..++|+++..+++.+.+. .| |.....-++.+|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 889999999999999999974 44 5557777777776
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=8.5e-06 Score=77.11 Aligned_cols=237 Identities=13% Similarity=0.083 Sum_probs=168.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048269 139 CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKM 218 (465)
Q Consensus 139 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 218 (465)
.+|-...-..+...+...|-...|..+|+++. .|..+|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 34444555667778888899999999998875 5777888899999999999888888774 6888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048269 219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298 (465)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 298 (465)
.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 88877777788888888765432 11122222234788888888888766553 2245667777777788889
Q ss_pred HHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269 299 LREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD 375 (465)
Q Consensus 299 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 375 (465)
++.|.+.|..... .+...||.+-.+|.+.++-.+|...+++..+.+..+ .. .|
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~-----------------------iW 590 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQ-----------------------IW 590 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ce-----------------------ee
Confidence 9999988888776 445679999999999999999999999988765322 11 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHh
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRG-VEVPRFDYNKFLHYYS 418 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~ 418 (465)
...+....+.|.+++|++.+.++.+.. ..-|..+...++....
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 223333478899999999888887522 1124444444444443
No 116
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=8e-05 Score=70.75 Aligned_cols=293 Identities=16% Similarity=0.094 Sum_probs=170.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
...-.+.++++...|+-++|-++-+ .+- --.+.|+.|.+.|.+.+|.+.-..-.. +..|......+..++
T Consensus 589 eklk~sy~q~l~dt~qd~ka~elk~----sdg----d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~al 658 (1636)
T KOG3616|consen 589 EKLKRSYLQALMDTGQDEKAAELKE----SDG----DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAAL 658 (1636)
T ss_pred HHHHHHHHHHHHhcCchhhhhhhcc----ccC----ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHH
Confidence 3444566677777777766654321 111 123456677777777666654322111 123444444444444
Q ss_pred HcCCCHHHHHHHHHHhh-----------------------cCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269 154 CQRKLVVEAKYLILKLS-----------------------EWIKPNEIAY-GWLIKGYCDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~-----------------------~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
.+..-+++|-.+|+++. -.+|..+++. ......+...|+++.|+..|-+..
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~----- 733 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----- 733 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----
Confidence 44433444444444332 0011111111 112223334455555554443322
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 289 (465)
.....+.+.....+|.+|+.+++.+..+.. -...|..+...|+..|+++.|.++|.+. ..++-.
T Consensus 734 ----~~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da 797 (1636)
T KOG3616|consen 734 ----CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA 797 (1636)
T ss_pred ----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence 123455667778899999999998887743 3456888889999999999999998653 235567
Q ss_pred HHHHHhcCCHHHHHHHHHHhcCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCC
Q 048269 290 IYGLLARGRLREAYKVVEEIEKPDI--SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKG 367 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 367 (465)
|.+|.+.|++++|.++-.+...|.. ..|-+-..-+-++|++.+|.++|-.+. .|+.
T Consensus 798 i~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~------------------ 855 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK------------------ 855 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH------------------
Confidence 8889999999999999998887543 445555555778888888888876552 3442
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHH
Q 048269 368 PDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKK 432 (465)
Q Consensus 368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (465)
.|..|-+.|..+..+++.++-... .-..|-..+..-+...|+.+.|++-+-+
T Consensus 856 ----------aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 856 ----------AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred ----------HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 233457777777777776654311 1123455556666666776666655443
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=3.6e-05 Score=76.97 Aligned_cols=217 Identities=11% Similarity=-0.009 Sum_probs=117.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--------------
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG-------------- 138 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------- 138 (465)
+...+..|+..+...+++++|.++.+...+..+.....|-.+...+.+.++...+..+ .+...-
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 6777888889888999999999999877776665444555555566666665555444 222110
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048269 139 ----CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV 214 (465)
Q Consensus 139 ----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 214 (465)
..-+...+-.+..+|-+.|+.++|..+++++..-.+.|+.+.|.+...|+.. ++++|.+++.+....
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence 0011123333444444445555555555554422244444444444444444 444444444444332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 048269 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEADNLTLSSIIYGL 293 (465)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~ 293 (465)
+...+++..+.+++..+... .| .+.+.-.++.+.+... |..--..++-.+-..|
T Consensus 179 -------~i~~kq~~~~~e~W~k~~~~--~~----------------~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 179 -------FIKKKQYVGIEEIWSKLVHY--NS----------------DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred -------HHhhhcchHHHHHHHHHHhc--Cc----------------ccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 33334444444444444433 11 1222223333333322 2222334455566777
Q ss_pred HhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHH
Q 048269 294 LARGRLREAYKVVEEIEK---PDISLYHGLIKGLL 325 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 325 (465)
...++++++..+++.+.+ .|.....-++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 888888899888888887 55566666777765
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=7.1e-05 Score=67.98 Aligned_cols=203 Identities=15% Similarity=0.107 Sum_probs=134.6
Q ss_pred HHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 159 VVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVF 235 (465)
Q Consensus 159 ~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 235 (465)
+..+...-+++. ....|+...+...+.+......-..+-.++.+..+.+ -...-| -....+...|+++.|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~Y-G~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQY-GRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHH-HHHHHHHHhcccchHHHHH
Confidence 445555555555 2234555555555554444433333333333222211 112223 2333455678888888888
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhcC---
Q 048269 236 QMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-NLTLSSIIYGLLARGRLREAYKVVEEIEK--- 311 (465)
Q Consensus 236 ~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~--- 311 (465)
+.+... .|.|+..+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|+..+|..+++....
T Consensus 330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 330 QPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 888766 5657777777788888888888888888888876 344 55556677888888888888888887766
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHH
Q 048269 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDA 391 (465)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 391 (465)
.|+..|..|..+|...|+..++..-..++. ...|+++.|
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~-----------------------------------------~~~G~~~~A 444 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY-----------------------------------------ALAGRLEQA 444 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH-----------------------------------------HhCCCHHHH
Confidence 677788888888888888888877766653 678999999
Q ss_pred HHHHHHHHhCCCCCCHhhH
Q 048269 392 AKYVERVMNRGVEVPRFDY 410 (465)
Q Consensus 392 ~~~~~~m~~~~~~p~~~~~ 410 (465)
...+....+. ++++..+|
T Consensus 445 ~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 445 IIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHHh-ccCCcHHH
Confidence 9999888874 34444443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=6.5e-06 Score=68.55 Aligned_cols=125 Identities=13% Similarity=0.090 Sum_probs=89.5
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HcCCC--HHHHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL-CQRKL--VVEAK 163 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~ 163 (465)
.++.+++...++...+.++.+...|..+...+...|++++|+..|+...+.. +.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5666777777777777777777778888888888888888888888777764 44666666666653 55565 47788
Q ss_pred HHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048269 164 YLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID 213 (465)
Q Consensus 164 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 213 (465)
+++++.....+.+..++..+...+.+.|++++|+..|+.+.+.. +|+..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 88888775556677777777777788888888888888877653 34443
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=6.1e-06 Score=68.72 Aligned_cols=162 Identities=9% Similarity=0.005 Sum_probs=121.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
-+..|...|+++.+....+.+.... ..+...++.++++..++...+.. +.|...|..+...|...|++
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL-----------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc-----------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456788888887654443322111 11223667788888888877765 77889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHH-HHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 160 VEAKYLILKLSEWIKPNEIAYGWLIKG-YCDVGD--LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
++|...|++...-.+.+...+..+..+ +...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|...|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999885557788888888886 467677 599999999999875 3367888899999999999999999999
Q ss_pred HHHHcCCCCCCcchHHHHHHH
Q 048269 237 MMRVKRMDDLGLSTYRIVIDW 257 (465)
Q Consensus 237 ~m~~~~~~~~~~~~~~~li~~ 257 (465)
.+.+. .|++..-+. +|.+
T Consensus 169 ~aL~l--~~~~~~r~~-~i~~ 186 (198)
T PRK10370 169 KVLDL--NSPRVNRTQ-LVES 186 (198)
T ss_pred HHHhh--CCCCccHHH-HHHH
Confidence 99876 332554444 4454
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.52 E-value=0.0014 Score=64.18 Aligned_cols=213 Identities=10% Similarity=0.002 Sum_probs=135.3
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL 105 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 105 (465)
+...|+++|..+..-.+..+...-.+..+.|+.+++.. ...++ .|..+...+-..|.+.|+.++|..+|+...+..+
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL-YGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh-ccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 67777778877766666665433334667777777774 32222 2888888888888889999999999988877655
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHhh--cCC
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL----------VVEAKYLILKLS--EWI 173 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~--~~~ 173 (465)
. ......+..+|+|.+.+.+-.++--++-+. .+-+...+=++++...+.-. ..-|.+.++.+. .|-
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 4 666777777888877776554444444332 23445555556665554321 234556666665 221
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 174 KPNEIAYGWLIKGYCDVGDLIEASKIW-NLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243 (465)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (465)
-.+..-...-.......|++++|..++ ....+.-...+...-+.-+..+...++|.+..++-.++...+.
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 112222222334455678899999988 4444432333444555677788888999999999999888753
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=5.2e-05 Score=75.04 Aligned_cols=148 Identities=11% Similarity=0.020 Sum_probs=128.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 69 CFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
.+..++..+-.|..+..+.|.+++|..+++...+..+-+......++..+.+.+++++|+..+++..... +-+....+.
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3556899999999999999999999999999999988888899999999999999999999999999875 556777888
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKM 218 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 218 (465)
+..++.+.|++++|..+|+++....+.+..++..+..++...|+.++|...|+...+.- .+...-|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 88999999999999999999986445668899999999999999999999999998752 2334444443
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00043 Score=63.68 Aligned_cols=351 Identities=12% Similarity=0.003 Sum_probs=226.6
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHcCCCHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS-LEMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~ 160 (465)
.+....|+++.|+.+|-+....++++...|..-..+|+..|++++|++=-.+-.+. .|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45677899999999999999988888888999999999999999998876666654 566 456888888899999999
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH---HHHHHHHHHHHCC---CCCcHHHHHHHHHHHHhc---------
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI---EASKIWNLMTDEG---FEPSIDVVDKMIETFFKI--------- 225 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~--------- 225 (465)
+|+.-|.+-....+.|...++-+..++....... .--.++..+...- .......|..++...-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999999988666788888888888872110000 0001111111100 000112233333322111
Q ss_pred -CCHHHHHHHHHHH-----HHcC-------CCC----------C-----------CcchHHHHHHHHHhcCChHHHHHHH
Q 048269 226 -NKDDEAMKVFQMM-----RVKR-------MDD----------L-----------GLSTYRIVIDWMCKRGKISQAYTML 271 (465)
Q Consensus 226 -g~~~~A~~~~~~m-----~~~~-------~~~----------~-----------~~~~~~~li~~~~~~~~~~~a~~~~ 271 (465)
.+...|.-.+... ...+ ..| . -..-...+.++..+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 1122222222111 0001 001 0 0123556788888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC---Hh-------hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPD---IS-------LYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 272 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~-------~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
....+.. -+..-++....+|...|.+......-+...+.. .. .+..+..+|.+.++++.++..|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 9888775 356666777788888888888877766655411 11 12223346777889999999999988
Q ss_pred HcCCCCCHHHHHHHHHHhhcccC-CCCCCCch-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 048269 342 KRGCEPTMHTYIMLLQGHLGKRG-RKGPDPLV-NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN 419 (465)
Q Consensus 342 ~~~~~p~~~~~~~ll~~~~~~~~-~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (465)
.....|+..+-.....--.+... ..-+.|.. .-...-...+.+.|++..|+..|.+++... +-|...|..-.-+|.+
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 76666665444333322211111 11122222 112223677889999999999999999864 3355689999999999
Q ss_pred ccchHHHHHHHHHHHHcC
Q 048269 420 EEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 420 ~g~~~~a~~~~~~~~~~g 437 (465)
.|.+..|+.-.+..++.+
T Consensus 405 L~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELD 422 (539)
T ss_pred HhhHHHHHHHHHHHHhcC
Confidence 999999999888888773
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=0.00014 Score=66.20 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=79.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHcCCCHHH
Q 048269 83 IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS-LEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~ 161 (465)
.+...|++++|+..+..+...-+.|+..+......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3344556666666666665555555555556666666666666666666666654 233 3444455566666666666
Q ss_pred HHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 162 AKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 162 a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
|+.+++......+.|+..|..|..+|...|+..++.....+ .+...|+++.|...+....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 66666666655556666666666666666665555443322 334455666666555555443
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=0.00038 Score=68.65 Aligned_cols=149 Identities=11% Similarity=-0.008 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV--NDKTFKIALMTLAEVRELKKMVN 129 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 129 (465)
+...|...|..+...+.+ +...+..+.+.|++..+++.|..+.-...+..+. -...|....-.|.+.++...++.
T Consensus 507 Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence 445666667666555554 6666667777777777777776663333222221 11223334445556666666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMT 204 (465)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 204 (465)
-|+...+.. +.|...|..+..+|...|++..|.++|.+...--|.+...--...-.-+..|.+.+++..+....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666544 44666677777777777777777777766652111121111112222345566666666655544
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00032 Score=58.25 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 188 (465)
..|..++-+....|+.+.|..+++.+...- +-+..+-..=.-.+-..|++++|+++|+.+....+-|.+++---+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 345555555666666666776666665542 2222222111222334566777777777766444566666665555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC---ChH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG---KIS 265 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~---~~~ 265 (465)
..|+-.+|++-+....+. +..|...|..+...|...|++++|.-+++++.-. .|.++..+..+...+.-.| +.+
T Consensus 132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 566666666666655554 4456677777777777777777777777776644 4545555555555544333 344
Q ss_pred HHHHHHHHHHHC
Q 048269 266 QAYTMLEEMFKR 277 (465)
Q Consensus 266 ~a~~~~~~m~~~ 277 (465)
.+.++|.+..+.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 566666666554
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=1.1e-05 Score=63.03 Aligned_cols=93 Identities=12% Similarity=0.039 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269 112 KIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG 191 (465)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 191 (465)
..+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++.....+.+...+..+...+...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 333333444444444444444433322 2233333334444444444444444444433222333333333344444444
Q ss_pred CHHHHHHHHHHHHH
Q 048269 192 DLIEASKIWNLMTD 205 (465)
Q Consensus 192 ~~~~a~~~~~~m~~ 205 (465)
++++|...|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444333
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=0.00013 Score=72.37 Aligned_cols=240 Identities=12% Similarity=0.072 Sum_probs=169.5
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCChhHH-HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 048269 67 QPCFAHNSITFNRMVDIIGKSRNIDLF-WETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM 145 (465)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 145 (465)
..|...++...+-+=.+++.-|..++| .+++.+. ..++....+.....+++.-...... ....+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (694)
T PRK15179 21 TGGPASGPTILDLLEAALAEPGESEEAGRELLQQA-----------RQVLERHAAVHKPAAALPELLDYVR-RYPHTELF 88 (694)
T ss_pred CCCCCCCcHHHhHHHHHhcCcccchhHHHHHHHHH-----------HHHHHHhhhhcchHhhHHHHHHHHH-hccccHHH
Confidence 334445566666666667777776666 3333333 2233444444444444443333333 34567888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI 225 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 225 (465)
+-.|.....+.|..++|..+++....-.+.+......+...+.+.+++++|...++...... +-+......+..++.+.
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999986667788889999999999999999999999998874 23566778888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048269 226 NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV 305 (465)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 305 (465)
|++++|.++|+++... .|.+..++..+..++...|+.++|...|+...+. ..+....|+..+. ++..-..+
T Consensus 168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~ 238 (694)
T PRK15179 168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAA 238 (694)
T ss_pred cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHH
Confidence 9999999999999974 4436789999999999999999999999998875 2334555555443 33444555
Q ss_pred HHHhcC--------CCHhhHHHHHHHHHhcC
Q 048269 306 VEEIEK--------PDISLYHGLIKGLLRLR 328 (465)
Q Consensus 306 ~~~~~~--------~~~~~~~~li~~~~~~~ 328 (465)
++.+.. ..+.+...+|..|.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 239 LRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 665543 23344556666665543
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.00051 Score=66.39 Aligned_cols=326 Identities=14% Similarity=0.078 Sum_probs=157.9
Q ss_pred CHHhHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-C--------CCC
Q 048269 73 NSITFNRMVD--IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC-G--------CEY 141 (465)
Q Consensus 73 ~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~ 141 (465)
|..+-..+++ .|.--|+.+.|.+-.+-+. +..+|..+.+.|.+..+++-|.-.+-.|... | -.+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 4444444443 3445566666655554443 4446666666677666666666666655431 1 011
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048269 142 SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET 221 (465)
Q Consensus 142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 221 (465)
+ .+-..+.-.....|.+++|..+|.+-+ -|..|=+.|-..|.|++|.++-+.=-.-. -..||..-..-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ck--------R~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCK--------RYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKY 867 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHH
Confidence 1 111122222344566666666666554 24455555666666666666554322111 12344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--------C----------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 048269 222 FFKINKDDEAMKVFQMMRVKRMD--------D----------LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN 283 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~--------~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 283 (465)
+-..++.+.|++.|++....... | .|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 55556666666666543211000 0 0111111111122222333333333322211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 048269 284 LTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKR 363 (465)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 363 (465)
|-++++..|-.|+.++|-++-++- .|....-.+.+.|-..|++.+|...|.+.+ +|...|+.| +..
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc-KEn 1006 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC-KEN 1006 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH-Hhc
Confidence 222333333344444444443322 455556667888888899999998888764 222233322 111
Q ss_pred C---------CCCCCCc-----------hHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCC--CHhhHHHH
Q 048269 364 G---------RKGPDPL-----------VNFDTIFVGGLVKAGKSLDAAKYVE--------RVMNRGVEV--PRFDYNKF 413 (465)
Q Consensus 364 ~---------~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p--~~~~~~~l 413 (465)
+ ......| ..-+...+..|-+.|.+.+|+++-= +++..++.| |+...+.-
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 1 0000000 0012234456677788888776521 122333433 55666666
Q ss_pred HHHHhhccchHHHHHHHHHHHHc
Q 048269 414 LHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
.+-++...++++|..++-..++.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 66677788888888877655543
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=3.9e-05 Score=60.37 Aligned_cols=93 Identities=9% Similarity=-0.156 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
.....+...|++++|...|+...... +.+...|..+..++...|++++|...|++.....+.+..++..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34445555555555555555555543 33455555555555555555555555555553334455555555555555555
Q ss_pred HHHHHHHHHHHHHC
Q 048269 193 LIEASKIWNLMTDE 206 (465)
Q Consensus 193 ~~~a~~~~~~m~~~ 206 (465)
+++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555543
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00038 Score=58.25 Aligned_cols=117 Identities=24% Similarity=0.242 Sum_probs=63.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh---
Q 048269 184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK--- 260 (465)
Q Consensus 184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~--- 260 (465)
...|+..|++++|++..+... +......=+..+.+..+.+.|.+.++.|.+-. +..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhc
Confidence 344566666666666555411 22333333344455556666666666665431 34455545554433
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 261 -RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 261 -~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
.+...+|.-+|++|-++ ..|++.+.+-...++...|++++|..+++....
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 23456666666666543 455666666666666666666666666666555
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=2e-05 Score=61.57 Aligned_cols=98 Identities=7% Similarity=-0.067 Sum_probs=86.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+......+...+...|++++|...|+.+...++.+...+..+...+...|++++|...++...+.+ +.+...+..+..+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 556677888889999999999999999988888788899999999999999999999999988765 5677888888899
Q ss_pred HHcCCCHHHHHHHHHHhhc
Q 048269 153 LCQRKLVVEAKYLILKLSE 171 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~ 171 (465)
+...|++++|.+.|+....
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998873
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=0.00035 Score=68.86 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 169 (465)
...|...|-+..+.++.=...|..|...|....+...|...|+...+.+ ..+..........|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4555555555555554334466666666666666667777777666654 445556666667777777777776663322
Q ss_pred hcCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048269 170 SEWIKPNE--IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247 (465)
Q Consensus 170 ~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 247 (465)
.+.-+.-. ..|....-.|.+.++...++.-|+...... +-|...|..+..+|.++|++..|.++|.+.... .|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 21111111 122223334556666666666666665542 235566677777777777777777777665543 3312
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 248 LSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
...---....-+..|.+.++...+....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222222233445666666666665554
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.36 E-value=0.00028 Score=67.25 Aligned_cols=139 Identities=18% Similarity=0.198 Sum_probs=102.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
-+.+......|.+|+.+++.++... .-..-|..+..-|...|+++.|.++|-+. ..++-.|..|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccc
Confidence 3455667788889999988887763 33455777888899999999999988642 24566788899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREM 340 (465)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 340 (465)
+|++|.++-.+.. |.......|..-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++..+-
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 9999988876653 4444566666666677788889898888877776664 356677778777777776654
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0011 Score=55.72 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH--
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC-- 154 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-- 154 (465)
...-...|.+.|++++|++..... .+......=..++.+..+++-|.+.++.|.+. .+..+.+-|..++.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL 182 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence 333344555555555555554431 12222333334444555555555555555542 23333333333332
Q ss_pred --cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269 155 --QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 155 --~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 227 (465)
..+.+..|.-+|++|....+|+..+.+-+..++...|++++|..+++...... .-++.+...++-+-...|.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 22345555555555554445555555555555555555555555555555442 1233444444433333333
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.4e-06 Score=49.65 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR 407 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (465)
+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999999873
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.28 E-value=2.9e-05 Score=71.34 Aligned_cols=124 Identities=16% Similarity=0.064 Sum_probs=100.2
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH
Q 048269 137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID 213 (465)
Q Consensus 137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 213 (465)
.+.+.+......+++.+....+++.+..++-+.. .....-..|..++++.|.+.|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3446677777888888888888888888888887 2333445566789999999999999999999888899999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc
Q 048269 214 VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR 261 (465)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 261 (465)
+++.|+..+.+.|++..|.++...|..++... +..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~-~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFD-NPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccC-CchHHHHHHHHHHHh
Confidence 99999999999999999999988888877666 777777777777666
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.1e-06 Score=48.97 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 211 (465)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.4e-06 Score=48.31 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=3.1e-06 Score=47.88 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV 405 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 405 (465)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888877
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00018 Score=56.79 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNKV 149 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 149 (465)
..|..++..+ ..++...+...++.+....+.+. ...-.+...+...|++++|...|+.+......++. .....+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 36677777777777776655442 23334556667777777777777777765422221 233345
Q ss_pred HHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 150 VKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
..++...|++++|+..++... ........+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666677777777777776543 1223444556666777777777777777664
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.0032 Score=52.56 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=144.3
Q ss_pred ChhHHHHHHHHHhh-cCCC-CCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269 52 SWRPVYLFFQYTQK-AQPC-FAHNSI-TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 52 ~~~~a~~~f~~~~~-~~~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
+++...++++.++. ...| ..++.. .|..++-+....|+.+.|..+++.+..+-+-+..+-..-.-.+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 78888888888732 1222 445543 46677888889999999999999988776545554444444556679999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
++|+.+.+.+ +.|..++..=+...-..|+--+|++-+.+....+..|...|.-+...|...|++++|.-.++++.-.
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-- 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-- 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--
Confidence 9999999977 6777888776667777888889999998888888999999999999999999999999999999875
Q ss_pred CC-cHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 048269 209 EP-SIDVVDKMIETFFKIN---KDDEAMKVFQMMRVK 241 (465)
Q Consensus 209 ~~-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 241 (465)
.| +.-.+..+...+.-.| +.+.|.+.|....+.
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 45 4444555555554444 567788999888766
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00018 Score=65.94 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048269 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLL 294 (465)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 294 (465)
...|+..+...++++.|.++|+++.+. ++.....++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER-----DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345556666677788888888887766 33355567777777777777888877777552 235555666666777
Q ss_pred hcCCHHHHHHHHHHhcC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 295 ARGRLREAYKVVEEIEK--P-DISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 295 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
+.++.+.|..+.+++.. | +..+|..|..+|...|+++.|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888887777 4 44578888888888888888887777664
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00011 Score=67.32 Aligned_cols=127 Identities=10% Similarity=0.049 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+-.....++..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++++.....+.+..........
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44445556666666677777777777777653 443 33466666666777777777777664445566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPS-IDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
+.+.++++.|+.+.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777777765 344 3477777777777777777777776654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00022 Score=56.37 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHhcCCHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPN---EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI--DVVDKMIETFFKINKDDE 230 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~ 230 (465)
.++...+...++.+....+.+ ....-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555555554222222 122223334455555555555555555554311111 122334445555555555
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
|+..++...... . ....+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~-~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--F-KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--h-HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422211 1 233444445555555555555555543
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.03 E-value=0.0001 Score=67.87 Aligned_cols=125 Identities=10% Similarity=0.107 Sum_probs=107.2
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 048269 171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL 248 (465)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 248 (465)
.+.+.+......+++.+....+++.+..++..++.. ....-..|..++++.|.+.|..+.+.+++..=...|+-| |.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~-D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP-DN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC-Ch
Confidence 455778888899999999999999999999998875 222233455699999999999999999999999999999 99
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048269 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR 296 (465)
Q Consensus 249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 296 (465)
.+++.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888777778877777766665
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.00019 Score=63.50 Aligned_cols=131 Identities=8% Similarity=0.067 Sum_probs=88.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE-VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
.+|..+++..-+.+..+.|..+|.+..+.+..+..+|......-.+ .++.+.|..+|+...+. ++.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4677777777777778888888888876555566666665555333 56666688888877764 356667777777777
Q ss_pred HcCCCHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 154 CQRKLVVEAKYLILKLSEWIKPNE---IAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
...++.+.|..+|++....+.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888774444333 46777777777777777777777777664
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.99 E-value=0.014 Score=54.20 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---cCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC---QRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASK 198 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~ 198 (465)
.+++.++++...+.-..-+..+|..+.+--- .....+.....++++. ....|+ .+|..+|+.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3455556655554322233333433332111 1123566667777766 333443 467788888888888999999
Q ss_pred HHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 199 IWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 199 ~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
+|.++.+.+..+ .+.++++++.-+| .++.+-|.++|+.=.+. .+.++.--...+.-+...++-..+..+|+.....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999887777 7778888888776 56788899999875544 2324445566677778888889999999999888
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 278 GIEAD--NLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 278 ~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
++.+| ...|..++..-++-|+...+.++-+++..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66554 46788899888889998888887776654
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.99 E-value=0.00023 Score=53.97 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHHHHHHH
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE--YSLEMLNKVV 150 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 150 (465)
++..+...+.+.|++++|.+.|+.+.+..+.+ ...+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555555555555555555555433311 234444555555555555555555555442100 1123344444
Q ss_pred HHHHcCCCHHHHHHHHHHhh
Q 048269 151 KTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~ 170 (465)
.++.+.|+.++|.+.++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 55555555555555555555
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.96 E-value=0.00013 Score=52.49 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCCcchHHH
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFFKIN--------KDDEAMKVFQMMRVKRMDDLGLSTYRI 253 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~~ 253 (465)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...++.| +..+|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP-~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP-NDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC-cHHHHHH
Confidence 34444445666666666666666666 566666666666555432 1223445555555555555 5555555
Q ss_pred HHHHHH
Q 048269 254 VIDWMC 259 (465)
Q Consensus 254 li~~~~ 259 (465)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.0002 Score=51.49 Aligned_cols=92 Identities=8% Similarity=-0.068 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
+..+...+...|++++|...++...+..+.+..++..+...+...+++++|.+.|+...... +.+..++..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444455555555555555555555444444445555555555555555555555554432 22333444444555555
Q ss_pred CCHHHHHHHHHHh
Q 048269 157 KLVVEAKYLILKL 169 (465)
Q Consensus 157 ~~~~~a~~~~~~m 169 (465)
|+.+.|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555555444
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=1.4e-05 Score=43.94 Aligned_cols=29 Identities=38% Similarity=0.843 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555566666666666666665555554
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.9e-05 Score=43.37 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGV 403 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 403 (465)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888887664
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.033 Score=55.04 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=47.9
Q ss_pred HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269 85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKY 164 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 164 (465)
.+.|+.++|..+++.....+..+..|...+-.+|...++.++|..+|+..... .|+......+..+|.+.+++.+-.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444443344455555555555555555555555555443 3444444444455555544444333
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHH
Q 048269 165 LILKLSEWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~li~~~~ 188 (465)
.--++-..++-+...|-.+++.+.
T Consensus 132 aa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 132 AALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHhCCcccchHHHHHHHHH
Confidence 333333333344444444444443
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0028 Score=56.39 Aligned_cols=211 Identities=12% Similarity=0.166 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC----CCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRR----RLV--NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
|......|-..|++++|.+.|.+.... +-+ ....|......+.+. ++++|++.++. .+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HH
Confidence 444556667777777777777665321 111 112233333333222 44444444433 34
Q ss_pred HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCC--cHHHHHHHHHHHH
Q 048269 151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV-GDLIEASKIWNLMTD----EGFEP--SIDVVDKMIETFF 223 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~--~~~~~~~li~~~~ 223 (465)
..|...|++..|-+++.++ ...|... |+++.|++.|.+..+ .| .+ -..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l--------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL--------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH--------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH--------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 4566666666665555544 3455555 777777777777654 22 11 1345667777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC----Cc-chHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHH
Q 048269 224 KINKDDEAMKVFQMMRVKRMDDL----GL-STYRIVIDWMCKRGKISQAYTMLEEMFKRG--IEAD--NLTLSSIIYGLL 294 (465)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~~----~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~--~~~~~~li~~~~ 294 (465)
+.|++++|.++|+++.......+ +. ..|-..+-++...||+..|.+.+++..... +..+ ......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 88888888888888766433220 11 122333445666788888888888876542 2212 334455566654
Q ss_pred h--cCCHHHHHHHHHHhcCCCHhhHH
Q 048269 295 A--RGRLREAYKVVEEIEKPDISLYH 318 (465)
Q Consensus 295 ~--~~~~~~a~~~~~~~~~~~~~~~~ 318 (465)
. ...+..+..-|+.+.+.|...-.
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred hCCHHHHHHHHHHHcccCccHHHHHH
Confidence 3 23466666666666655544333
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00058 Score=51.78 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=6.2
Q ss_pred HHhcCCHHHHHHHHHHH
Q 048269 222 FFKINKDDEAMKVFQMM 238 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m 238 (465)
+.+.|++++|.+.++++
T Consensus 86 ~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 86 LQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHhCChHHHHHHHHHH
Confidence 33333333333333333
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.84 E-value=0.00036 Score=50.27 Aligned_cols=80 Identities=15% Similarity=0.273 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHH
Q 048269 215 VDKMIETFFKINKDDEAMKVFQMMRVKRM-DDLGLSTYRIVIDWMCKRG--------KISQAYTMLEEMFKRGIEADNLT 285 (465)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~ 285 (465)
-...|..+...+++.....+|+.+.+.|+ .| +..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lP-sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLP-SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34566677777999999999999999999 67 9999999999987654 23467889999999999999999
Q ss_pred HHHHHHHHHh
Q 048269 286 LSSIIYGLLA 295 (465)
Q Consensus 286 ~~~li~~~~~ 295 (465)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00039 Score=49.92 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
.+...+...|++++|+..++...+.. +.+...+..+..++...+++++|.+.++......+.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34444445555555555555554432 22223444444444445555555555554442223333344444444444455
Q ss_pred HHHHHHHHHHHH
Q 048269 193 LIEASKIWNLMT 204 (465)
Q Consensus 193 ~~~a~~~~~~m~ 204 (465)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555544444443
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.77 E-value=0.0008 Score=54.96 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=83.2
Q ss_pred HHHHHHh--cCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269 303 YKVVEEI--EKPDISLYHGLIKGLLR-----LRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD 375 (465)
Q Consensus 303 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 375 (465)
...|+.. ...+-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||..+- +|.-.....+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP-----Kg~fvp~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP-----KGKFVPRNFF 108 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC-----CCCcccccHH
Confidence 3455555 33677777777777764 4677888888899999999999999999999982 1222223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (465)
.++...|-+ +-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 109 Q~~F~hyp~--Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMHYPR--QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhccCcH--HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 444444433 44669999999999999999999999999998764
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.013 Score=50.54 Aligned_cols=183 Identities=9% Similarity=-0.074 Sum_probs=97.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKT---FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV 149 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 149 (465)
++..+-.....+.+.|++++|.+.|+.+....+-++.+ .-.++.++.+.+++++|...+++..+....-....|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44444445556666788888888888887766544333 245566777788888888888877764311111222222
Q ss_pred HHHHHc--CC---------------CH---HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269 150 VKTLCQ--RK---------------LV---VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 150 l~~~~~--~~---------------~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
+.+.+. .+ +. .+|++.| ..+++-|-.+.-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~--------------~~li~~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF--------------SKLVRGYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH--------------HHHHHHCcCChhHHHHHHHHHHHHHH---
Confidence 222221 00 11 1222222 23333333333344444444444321
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD---LGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
.-.. -..+.+.|.+.|.+..|..-++.+.+. -| ........++.+|...|..+.|..+...+.
T Consensus 174 la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRD--YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111 124556677777777777777777754 23 123345566677777777777777665543
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.73 E-value=0.0021 Score=50.08 Aligned_cols=97 Identities=5% Similarity=-0.176 Sum_probs=76.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+......+...+...|++++|..+|+.+...++.+..-|-.|..++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 344455566667778888888888888888887777778888888888888888888888887766 4667777778888
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
+...|+.+.|.+.|+...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 113 YLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 888888888888888766
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0028 Score=51.75 Aligned_cols=83 Identities=14% Similarity=0.062 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS--IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 256 (465)
.+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.... .|.+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 344444555555555555555555544321111 234555555555556666666555555543 2323444444444
Q ss_pred HHHhcCC
Q 048269 257 WMCKRGK 263 (465)
Q Consensus 257 ~~~~~~~ 263 (465)
.+...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 5554444
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.0014 Score=60.31 Aligned_cols=89 Identities=7% Similarity=-0.129 Sum_probs=59.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 160 (465)
...+...|++++|++.|+++.+.++.+...|..+..++.+.|++++|+..++.+.... +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445566677777777777776666666666666677777777777777777766653 345556666666666777777
Q ss_pred HHHHHHHHhh
Q 048269 161 EAKYLILKLS 170 (465)
Q Consensus 161 ~a~~~~~~m~ 170 (465)
+|+..|++..
T Consensus 88 eA~~~~~~al 97 (356)
T PLN03088 88 TAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.049 Score=52.32 Aligned_cols=121 Identities=9% Similarity=0.013 Sum_probs=72.5
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR-RLV---------NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE 140 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 140 (465)
.|.+..|..+.......-.++.|...|-+...- |+. +...-.+=+. +-.|++++|+++|-++.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 368888988888888777788888777655432 221 1111111122 23588899999888777653
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW--IKPNEIAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 141 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
..+..+.+.|++-.+.++++.-..+ ...-..+|+.+...++....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677776666665542211 112235666666666666666666666654
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0013 Score=58.35 Aligned_cols=131 Identities=8% Similarity=-0.013 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT-LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|-..... +...++.+.|.++|+.....++.+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 367777788888888888888888887543 2334444444444 23356666688888887755677778888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 188 CDVGDLIEASKIWNLMTDEGFEPSI---DVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
.+.++.+.|..+|+..... +.++. ..|...++.=.+.|+.+.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888765 32222 47777777777778888888887777664
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0072 Score=49.28 Aligned_cols=88 Identities=10% Similarity=-0.066 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS--LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
..+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++.....+.+...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3455555556666666666666666654321111 24455555666666666666666666553233344455555555
Q ss_pred HHhcCCHHHH
Q 048269 187 YCDVGDLIEA 196 (465)
Q Consensus 187 ~~~~g~~~~a 196 (465)
+...|+...+
T Consensus 116 ~~~~g~~~~a 125 (172)
T PRK02603 116 YHKRGEKAEE 125 (172)
T ss_pred HHHcCChHhH
Confidence 5555554433
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.00012 Score=51.63 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 048269 218 MIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~ 236 (465)
+..++.+.|++++|.++++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3344444444444444443
No 168
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0067 Score=50.94 Aligned_cols=190 Identities=8% Similarity=-0.001 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269 35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA 114 (465)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 114 (465)
++++-..+...+......|...+.-.... . .....++..+-.....+..++.|++=.. .+.+.+
T Consensus 120 VPFsmR~lhAe~~~~lgnpqesLdRl~~L-~---------~~V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~ 183 (366)
T KOG2796|consen 120 VPFSMRILHAELQQYLGNPQESLDRLHKL-K---------TVVSKILANLEQGLAEESSIRLWRKRLG------RVMYSM 183 (366)
T ss_pred ccHHHHHHHHHHHHhcCCcHHHHHHHHHH-H---------HHHHHHHHHHHhccchhhHHHHHHHHHH------HHHHHH
Confidence 45555555666656555555544443332 0 1122233333333333555555554321 245555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHH-----HHHHH
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWL-----IKGYC 188 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~l-----i~~~~ 188 (465)
+..+.-.|.+.-....+.+..+...+.++.....|++.-.+.|+.+.|...|++.. ..-..|..+++.+ ...|.
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 66666666666666666666665545566666666666666777777776666554 2223333333322 23344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
-.+++.+|...|.+..... .-|+...|.-.-+..-.|+...|.+.++.|.+.
T Consensus 264 g~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred cccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666666666665543 223444444333444456667777777776654
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0022 Score=58.93 Aligned_cols=91 Identities=11% Similarity=-0.078 Sum_probs=70.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 194 (465)
...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++...-.+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 455667788888888888888765 4566777777788888888888888888877444567777888888888888888
Q ss_pred HHHHHHHHHHHC
Q 048269 195 EASKIWNLMTDE 206 (465)
Q Consensus 195 ~a~~~~~~m~~~ 206 (465)
+|...|+...+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 888888888775
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.58 E-value=0.005 Score=48.01 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269 112 KIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG 191 (465)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 191 (465)
-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.....-.+.|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 334444556666666666666666543 3344445555566666666666666666655222455566666666666666
Q ss_pred CHHHHHHHHHHHHH
Q 048269 192 DLIEASKIWNLMTD 205 (465)
Q Consensus 192 ~~~~a~~~~~~m~~ 205 (465)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.0056 Score=54.45 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCH
Q 048269 214 VVDKMIETFFKI-NKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-----ADN 283 (465)
Q Consensus 214 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~ 283 (465)
++..+...|-.. |+++.|.+.|++..+. +....-..++..+...+.+.|++++|.++|++....-.. .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 445556667777 8999999988876542 211101345677888899999999999999998765322 122
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHhcC--C---C---HhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHH
Q 048269 284 L-TLSSIIYGLLARGRLREAYKVVEEIEK--P---D---ISLYHGLIKGLLRL--RRAREATQVFREMIKRGCEPTMHTY 352 (465)
Q Consensus 284 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~---~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~ 352 (465)
. .+...+-++...|+...|.+.+++... | + ......|+.+|-.. ..++.++.-|+.+. +.|..--
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~ 271 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHH
Confidence 2 223344466778999999999999876 2 2 23345566666542 34666666666553 3455444
Q ss_pred HHHH
Q 048269 353 IMLL 356 (465)
Q Consensus 353 ~~ll 356 (465)
..|+
T Consensus 272 ~~l~ 275 (282)
T PF14938_consen 272 KMLL 275 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.0022 Score=52.18 Aligned_cols=80 Identities=9% Similarity=-0.146 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY--SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
..+..+...+...|++++|+..|+........+ ...++..+..++...|+.++|+..+++.....+....++..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345555556666666666666666665432111 123555566666666666666666666553223334444444444
Q ss_pred HH
Q 048269 187 YC 188 (465)
Q Consensus 187 ~~ 188 (465)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.52 E-value=0.00045 Score=48.60 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269 226 NKDDEAMKVFQMMRVKRMD-DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304 (465)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (465)
|+++.|+.+++.+.+.... + +...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555544211 1 222333345555555555555555554 111111 11222233444555555555555
Q ss_pred HHH
Q 048269 305 VVE 307 (465)
Q Consensus 305 ~~~ 307 (465)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.037 Score=46.68 Aligned_cols=155 Identities=13% Similarity=0.029 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 125 KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLM 203 (465)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 203 (465)
+..++.|+.-. ..+-+.++.++...|.+.-...++.++. ...+.++.....|++.-.+.||.+.|...|++.
T Consensus 166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55555555433 2345667777778888888889999888 444678888899999999999999999999977
Q ss_pred HHCCCCCcHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269 204 TDEGFEPSIDVV-----DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278 (465)
Q Consensus 204 ~~~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 278 (465)
.+..-..|..+. ......|.-.+++..|...+.++... .|.++...|.-.-+..-.|+..+|.+.++.|+..
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 664333444433 44445567778899999999888765 4436666666566666689999999999999876
Q ss_pred CCCCHHHHHHHH
Q 048269 279 IEADNLTLSSII 290 (465)
Q Consensus 279 ~~~~~~~~~~li 290 (465)
.|...+-++++
T Consensus 316 -~P~~~l~es~~ 326 (366)
T KOG2796|consen 316 -DPRHYLHESVL 326 (366)
T ss_pred -CCccchhhhHH
Confidence 44555544433
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00048 Score=46.17 Aligned_cols=62 Identities=10% Similarity=-0.013 Sum_probs=40.0
Q ss_pred HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
...|++++|+++|+.+....+.+..++..+..++.+.|++++|..+++.+... .|+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 35667777777777777666666666667777777777777777777777664 344333333
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.48 E-value=0.0035 Score=50.97 Aligned_cols=95 Identities=9% Similarity=-0.013 Sum_probs=70.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV 149 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 149 (465)
....|..+...+...|++++|+..|+........ ...++..+...+...|++++|+..++...... +.....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 4666788888888999999999999999765432 23578889999999999999999999988753 3345556666
Q ss_pred HHHHH-------cCCCHHHHHHHHHH
Q 048269 150 VKTLC-------QRKLVVEAKYLILK 168 (465)
Q Consensus 150 l~~~~-------~~~~~~~a~~~~~~ 168 (465)
...+. ..|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 55565544444443
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.48 E-value=0.00089 Score=54.69 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=37.8
Q ss_pred CCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269 174 KPNEIAYGWLIKGYCDV-----GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK 224 (465)
Q Consensus 174 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 224 (465)
..|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 45667777777777643 6777777788888888888888888888877654
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.01 Score=57.16 Aligned_cols=144 Identities=11% Similarity=0.009 Sum_probs=97.0
Q ss_pred CCCCCHHhHHHHHHHHHhc-----CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHHHhh
Q 048269 69 CFAHNSITFNRMVDIIGKS-----RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV--------RELKKMVNFFHIMN 135 (465)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 135 (465)
..+.|...|...+++.... ++...|..+|++..+.++.....+..+..++... .+...+.+..+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3445778888777765443 2366888899998888876666666654444332 12334444444433
Q ss_pred hC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048269 136 DC-GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV 214 (465)
Q Consensus 136 ~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 214 (465)
.. ..+.+...|..+.-.+...|++++|...+++...- .|+...|..+...+...|+.++|...+++.... .|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 32 12445567777766666778999999999998732 357888889999999999999999999888765 344444
Q ss_pred H
Q 048269 215 V 215 (465)
Q Consensus 215 ~ 215 (465)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.044 Score=49.35 Aligned_cols=255 Identities=15% Similarity=0.064 Sum_probs=131.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 161 (465)
..+.+..++..|+..+....+..+.+..-|.--+..+...+++++++--.+.-.+.. +-....+.-.-+++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 345566677778888888877777666666666666777777777766655444422 1111122222333333333333
Q ss_pred HHHHHH---------------Hhh--cCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH--H
Q 048269 162 AKYLIL---------------KLS--EWIKPNEIAYGWLI-KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIE--T 221 (465)
Q Consensus 162 a~~~~~---------------~m~--~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~ 221 (465)
|...++ .+. ..-+|...+|..|- .++.-.|+.++|.+.-....+.. ....+...++ +
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLC 212 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccc
Confidence 333322 111 11123333443332 33445577777777666655542 1122223333 3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCcchHH---HHHHH----------HHhcCChHHHHHHHHHHHHC---CCCCCHHH
Q 048269 222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYR---IVIDW----------MCKRGKISQAYTMLEEMFKR---GIEADNLT 285 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---~li~~----------~~~~~~~~~a~~~~~~m~~~---~~~~~~~~ 285 (465)
+.-.++.+.|...|++.+.. .| +...-. ..... ..+.|.+..|.+.|.+.+.. ++.++...
T Consensus 213 ~yy~~~~~ka~~hf~qal~l--dp-dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRL--DP-DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred cccccchHHHHHHHhhhhcc--Ch-hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 33456777777777776644 33 222211 11111 23556667777777666543 23445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHH-HH--HHHHhcCCHHHHHHHHHHHHHc
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEKPDISLYHG-LI--KGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-li--~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
|........+.|+..+|+.--+....-|..-.-+ +. .++...++|++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555556666677777777666666644332222 22 2344456666666666666544
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.029 Score=48.46 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcC--CCH----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 288 SIIYGLLARGRLREAYKVVEEIEK--PDI----SLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
.+...|.+.|.+..|..-++.+.+ |+. .....++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345567777777777777777766 333 334456677777788777777666553
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.024 Score=45.14 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=67.9
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHH
Q 048269 175 PNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIV 254 (465)
Q Consensus 175 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 254 (465)
|++..--.|..+....|+..+|...|.+....-+--|......+.++....+++..|...++++.+....-.++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445555555666666666666655544334455555555555566666666666666555443211233344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 255 IDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVV 306 (465)
Q Consensus 255 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 306 (465)
.+.+...|.+.+|..-|+..... -|+...-......+.+.|+.+++..-+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55666666666666666665554 334333333334445555555544333
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.017 Score=55.66 Aligned_cols=135 Identities=11% Similarity=-0.054 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHHHC
Q 048269 140 EYSLEMLNKVVKTLCQR-----KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV--------GDLIEASKIWNLMTDE 206 (465)
Q Consensus 140 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~ 206 (465)
+.+...|...+++.... ++...|..+|++.....+-+...|..+..++... .++..+.+........
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45566666666553321 2255666666666643344444454443333221 1122333333332221
Q ss_pred -CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 207 -GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 207 -g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
....+...|.++.-.+...|++++|...+++.... .| +...|..+...+...|+.++|...+++....
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12334456666655555667777777777777655 34 5666777777777777777777777766654
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.053 Score=45.52 Aligned_cols=181 Identities=10% Similarity=-0.021 Sum_probs=96.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNK 148 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 148 (465)
...+-.....+...|++++|.+.|+.+....+. ...+.-.++.++.+.|+++.|...++...+.- |+. ..+..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~ 82 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHH
Confidence 344445566777888899999999888876542 34566777888888889999988888877642 222 11222
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEW---IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI 225 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 225 (465)
.+.+.+......... ..... ...-...+..++.-|-.+.-..+|...+..+.+. . ...-..+...|.+.
T Consensus 83 Y~~g~~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 83 YMLGLSYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHc
Confidence 222222111111110 00000 0000123445555555555566666655555432 1 11122356667888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHhcCChHHH
Q 048269 226 NKDDEAMKVFQMMRVKRMDDLGL----STYRIVIDWMCKRGKISQA 267 (465)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a 267 (465)
|.+..|..-++.+.+. -| ++ .....++.+|.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~--yp-~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YP-DTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHH--ST-TSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CC-CCchHHHHHHHHHHHHHHhCChHHH
Confidence 8888888888887766 44 32 2345666777777776643
No 184
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.01 Score=51.30 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHH
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR---KLVVEAKYLI 166 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~ 166 (465)
++....-++.-.+.++.+...|-.|...|...|++..|...|....+.. .++...+..+..++..+ ....++..+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3444455666677788888899999999999999999999999888754 56677776666665443 3467888999
Q ss_pred HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269 167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIE 220 (465)
Q Consensus 167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 220 (465)
+++....+-|+.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 99887677888888888899999999999999999998863 44444445544
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.01 Score=51.28 Aligned_cols=114 Identities=11% Similarity=-0.047 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269 140 EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDLIEASKIWNLMTDEGFEPSIDVVD 216 (465)
Q Consensus 140 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~ 216 (465)
+-|...|-.|...|...|+.+.|...|.+...-.++|...+..+..++... .+..++..+|+++.... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 678999999999999999999999999998844466666666666655443 34578999999998863 33667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269 217 KMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW 257 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 257 (465)
.|...+...|++.+|...|+.|.+. .| ....+..+|..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp-~~~~rr~~ie~ 269 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LP-ADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CC-CCCchHHHHHH
Confidence 7888899999999999999999976 44 33455555554
No 186
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.39 E-value=0.00088 Score=44.36 Aligned_cols=58 Identities=5% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
+...+.+.|++++|...|+.+.+..+.+...+..+..++.+.|++++|...|+.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677777777777777777777666677777777777777777777777777654
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.38 E-value=0.0018 Score=57.73 Aligned_cols=135 Identities=7% Similarity=-0.123 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 048269 284 LTLSSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIM 354 (465)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 354 (465)
..|..|-+.|.-.|+++.|+..-+.=.. ..-..+..+..+++-.|+++.|.+.|+.-....+.....+..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE- 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE- 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-
Confidence 3456666667777888888765543222 334556777788888899999998888765332222222211
Q ss_pred HHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHhhccchHHHHHH
Q 048269 355 LLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN----RG-VEVPRFDYNKFLHYYSNEEGVVMFEEV 429 (465)
Q Consensus 355 ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (465)
..+.-+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|..+
T Consensus 275 -----------------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 275 -----------------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred -----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 11223567777888889999988876543 11 223445888999999999999999988
Q ss_pred HHHHHHc
Q 048269 430 GKKLREV 436 (465)
Q Consensus 430 ~~~~~~~ 436 (465)
.+.-++.
T Consensus 338 ae~hl~~ 344 (639)
T KOG1130|consen 338 AELHLRS 344 (639)
T ss_pred HHHHHHH
Confidence 8877665
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.33 E-value=0.019 Score=43.10 Aligned_cols=89 Identities=8% Similarity=-0.096 Sum_probs=42.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKT 152 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~ 152 (465)
+..++-..|+.++|+.+|++....|... ...+-.+...+...|++++|+.+|+...... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 3444555556666666666655555432 2244445555555566666666555554431 22 1111122234
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
+...|+.++|++.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 445555555555554433
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.32 E-value=0.11 Score=46.63 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQ 98 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~ 98 (465)
+|..+.....+.|+.+-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 35555666666666666666554
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.31 E-value=0.0011 Score=44.58 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=45.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMND 136 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 136 (465)
++..|..+...+.+.|++++|+..|++..+.++.+..+|..+..++.+.| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45667777777777777777777777777776666667777777777777 57777777776654
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.12 Score=46.41 Aligned_cols=317 Identities=11% Similarity=0.059 Sum_probs=207.0
Q ss_pred HHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHh--cCChhHHHHHHHHHhhCCCCChHHHHHHH--HHH
Q 048269 43 LQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGK--SRNIDLFWETLQEMGRRRLVNDKTFKIAL--MTL 118 (465)
Q Consensus 43 ~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~l~--~~~ 118 (465)
-.++..+-.+|..+.+.|... +++.| |..|-..+.- .|+-..|.++-.+..+.=..+....-.++ ++-
T Consensus 59 wwlv~~iw~sP~t~~Ryfr~r-KRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaa 130 (531)
T COG3898 59 WWLVRSIWESPYTARRYFRER-KRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAA 130 (531)
T ss_pred HHHHHHHHhCcHHHHHHHHHH-HhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 344555666888999999987 77777 5566555544 47777887777654322112323333333 344
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048269 119 AEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEA 196 (465)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a 196 (465)
.-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.|.++-++.-..-+.-...+...+...|..|+|+.|
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 567999999999999987 233322 223333345689999999998887744455678899999999999999999
Q ss_pred HHHHHHHHHCC-CCCcHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHhcCChHHHHH
Q 048269 197 SKIWNLMTDEG-FEPSID--VVDKMIETFFK---INKDDEAMKVFQMMRVKRMDDLGL-STYRIVIDWMCKRGKISQAYT 269 (465)
Q Consensus 197 ~~~~~~m~~~g-~~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~ 269 (465)
+++++.-++.. +.++.. .-..|+.+-.. ..+...|.+.-.+..+ +.| +. ..-..-..++.+.|+..++-.
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~p-dlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAP-DLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCC-ccchHHHHHHHHHHhccchhhhhh
Confidence 99999887643 233332 12223322111 2345556665555443 355 32 234455678999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREA----YKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345 (465)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 345 (465)
+++.+-+....|+. .. +..+.+.|+.... .+-+..|+..+..+.-.+..+-...|++..|..--+... ..
T Consensus 285 ilE~aWK~ePHP~i--a~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~ 358 (531)
T COG3898 285 ILETAWKAEPHPDI--AL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA--RE 358 (531)
T ss_pred HHHHHHhcCCChHH--HH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--hh
Confidence 99999888555543 22 2234555553222 123445555777788888888888999988877666555 34
Q ss_pred CCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048269 346 EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNR 401 (465)
Q Consensus 346 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (465)
.|....|..+-..- -...||-.++...+.+....
T Consensus 359 ~pres~~lLlAdIe----------------------eAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRESAYLLLADIE----------------------EAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchhhHHHHHHHHH----------------------hhccCchHHHHHHHHHHhcC
Confidence 67777776655543 15669999999999888753
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.024 Score=42.57 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---CcchHHHHHHHH
Q 048269 184 IKGYCDVGDLIEASKIWNLMTDEGFEPS--IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL---GLSTYRIVIDWM 258 (465)
Q Consensus 184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~ 258 (465)
..++-..|+.++|+.+|+.....|+... ...+-.+.+.+...|++++|..++++.... .|. +......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445555666666666666666665433 234445556666666666666666666544 221 111222223344
Q ss_pred HhcCChHHHHHHHHHHH
Q 048269 259 CKRGKISQAYTMLEEMF 275 (465)
Q Consensus 259 ~~~~~~~~a~~~~~~m~ 275 (465)
...|+.++|...+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55566666666554443
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.28 E-value=0.13 Score=46.33 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 048269 283 NLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGK 362 (465)
Q Consensus 283 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 362 (465)
..+.+..+.-+...|+...|.++..+..-|+-..|...+.+++..++|++-.++-.. . -++..|..++.+|
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~--- 247 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC--- 247 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH---
Confidence 345556667777888888888888888778888888889999999998876665332 1 1224444444444
Q ss_pred cCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 363 RGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 363 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
.+.|...+|..+..++ .+ ..-+..|.+.|++.+|.+..-+..
T Consensus 248 --------------------~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 248 --------------------LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred --------------------HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7778888888777762 11 333455666777777666544433
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0059 Score=52.42 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=55.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269 116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (465)
.-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+....-.+....+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34455566666666666666543 33444455555566666666666655555443233344556666666666666666
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHH
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMI 219 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li 219 (465)
|++.|++..+. .|+-.+|-.=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 66666655543 45544443333
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0024 Score=42.80 Aligned_cols=64 Identities=13% Similarity=-0.034 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhcc-chHHHHHHHHHHHHc
Q 048269 371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEE-GVVMFEEVGKKLREV 436 (465)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~ 436 (465)
++..|..+...+...|++++|+..|++.++. .|+ ...|..+..++...| ++++|.+.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567888999999999999999999999984 564 458999999999999 899999999998865
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.21 E-value=0.19 Score=48.16 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=107.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC------------CChHHHHHHHHHHHhcCC--HHHHHHHHHHhhh
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL------------VNDKTFKIALMTLAEVRE--LKKMVNFFHIMND 136 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 136 (465)
.+.+..+.+-+..|...|.+++|.++-- .|+ ...--++..-.+|.+.++ +-+.+.-++++++
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccc----cceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455555566666777666654321 111 011124444455655544 3344555667777
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYG-----WLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
+|-.|+... +...++-.|.+.+|-++|.+-- ++-. ...|+ -+..-|...|+.++-..+.++-.+.. -
T Consensus 629 rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA--lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r 701 (1081)
T KOG1538|consen 629 RGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA--LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--R 701 (1081)
T ss_pred cCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH--HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--h
Confidence 886677654 3344566677777777776543 1000 00011 11222333343333333322221110 0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH------HHH--cCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048269 211 SIDVVDKMIETFFKINKDDEAMKVFQM------MRV--KRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD 282 (465)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (465)
+..--.+....+...|+.++|..+..+ +.+ ..+...+..+...+..-+.+...+.-|.++|.+|-..
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 000012334445556666666654321 111 1111113344445555555566666777777766432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 283 NLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 283 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
..++......+++++|..+-+..++
T Consensus 777 ----ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ----KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ----HHHhhheeecccchHhHhhhhhCcc
Confidence 3456667778888888888887777
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.0045 Score=53.10 Aligned_cols=88 Identities=9% Similarity=-0.084 Sum_probs=55.4
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 161 (465)
.-+.+.+++.+|+..|.+.++..+.++..|..-..+|.+.|.++.|++-.+.....+ +-...+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666666666666666666666666666666666666666655543 3345566666666666666666
Q ss_pred HHHHHHHhh
Q 048269 162 AKYLILKLS 170 (465)
Q Consensus 162 a~~~~~~m~ 170 (465)
|++.|++..
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 666666655
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.0011 Score=44.34 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=8.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHh
Q 048269 148 KVVKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m 169 (465)
.+..+|.+.|++++|..+++++
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333333
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.16 E-value=0.14 Score=46.62 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=22.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 247 GLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 247 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3345667777777777777777777777765
No 200
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.15 E-value=0.2 Score=45.95 Aligned_cols=375 Identities=11% Similarity=0.072 Sum_probs=197.1
Q ss_pred ChhHHHHHHHHHhhcCCC--CCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHH--HHHhcCCHHH
Q 048269 52 SWRPVYLFFQYTQKAQPC--FAHN-SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM--TLAEVRELKK 126 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 126 (465)
+...|..+|..+...... +... ...-+.++++|... +.+.....+....+....+. |-.+.. .+.+.+.+.+
T Consensus 21 ~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~--~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 21 KFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSA--YLPLFKALVAYKQKEYRK 97 (549)
T ss_pred hhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHhhhHHH
Confidence 667899999987322211 1111 22234566666543 56666666666655544332 333333 3467788999
Q ss_pred HHHHHHHhhhC--CCCCCH------------HHHHHHHHHHHcCCCHHHHHHHHHHhh-c----CCCCCHHhHHHHHHHH
Q 048269 127 MVNFFHIMNDC--GCEYSL------------EMLNKVVKTLCQRKLVVEAKYLILKLS-E----WIKPNEIAYGWLIKGY 187 (465)
Q Consensus 127 a~~~~~~~~~~--~~~~~~------------~~~~~ll~~~~~~~~~~~a~~~~~~m~-~----~~~~~~~~~~~li~~~ 187 (465)
|++.+....+. +..+.. ..-+..++++...|++.+++.+++++. . ...-+..+|+.++-.+
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 99888877664 323211 112456778888999999999999887 2 2336888888866665
Q ss_pred HhcCC---------------HHHHHHHHHHHHHC------CCCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCC
Q 048269 188 CDVGD---------------LIEASKIWNLMTDE------GFEPSIDVVDKMIETFFKI--NKDDEAMKVFQMMRVKRMD 244 (465)
Q Consensus 188 ~~~g~---------------~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~ 244 (465)
.+.=- ++.+.-..+++... .+.|.......++.-..-. .+..--.+++......-+.
T Consensus 178 srSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~ 257 (549)
T PF07079_consen 178 SRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVH 257 (549)
T ss_pred hHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccC
Confidence 54311 11222222222211 1223333333333322211 1122223333333334444
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHH
Q 048269 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA----DNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYH 318 (465)
Q Consensus 245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 318 (465)
|...-....+...+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|.+.+.-+.. |+...-.
T Consensus 258 p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~ 335 (549)
T PF07079_consen 258 PNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSE 335 (549)
T ss_pred CchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhh
Confidence 5223334444444444 6677777776665443211 234566777777888888888887776655 5544333
Q ss_pred HH-------HHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hhcccC--------------------
Q 048269 319 GL-------IKGLLRL----RRAREATQVFREMIKRGCEPTMHTYIMLLQG---HLGKRG-------------------- 364 (465)
Q Consensus 319 ~l-------i~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~-------------------- 364 (465)
.+ -...+.. -+...-+.+|.+.....+.-.. -...++.+ +...++
T Consensus 336 Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ 414 (549)
T PF07079_consen 336 KLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDI 414 (549)
T ss_pred hhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccH
Confidence 33 2233311 1122223333333322211000 00001100 000000
Q ss_pred ----------------------------------CCCCCCch----HHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCC
Q 048269 365 ----------------------------------RKGPDPLV----NFDTIFVGG--LVKAGKSLDAAKYVERVMNRGVE 404 (465)
Q Consensus 365 ----------------------------------~~~~~~~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~ 404 (465)
..|++|-. ..-|.|-++ +...|++.++.-.-.-+.+ +.
T Consensus 415 ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--ia 492 (549)
T PF07079_consen 415 ECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IA 492 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hC
Confidence 55555532 344444433 5578888888766555554 78
Q ss_pred CCHhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 405 VPRFDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
|++.+|..+.-++....++++|..++.++-
T Consensus 493 PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 493 PSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999999999999999999987653
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.13 E-value=0.0028 Score=41.92 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=8.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
..+..+..++...|++++|..+|+.
T Consensus 32 ~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 32 EAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333333333333333333
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.08 E-value=0.1 Score=43.81 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhcC--CCHhh----HHHHHHHHHhcCCHH
Q 048269 290 IYGLLARGRLREAYKVVEEIEK--PDISL----YHGLIKGLLRLRRAR 331 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~li~~~~~~~~~~ 331 (465)
...|.+.|.+..|..-++.+.+ |++.. .-.++.+|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 4445555555555555555554 33322 234455555555544
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.0072 Score=47.76 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCHHHH
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND-----CGCEYSLEML 146 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 146 (465)
+...++..+...|++++|..+.+.+...++.+...|..+|.++...|+...|+++|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666666777777777777777777777777777777777777777777777776643 5666766553
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.03 E-value=0.018 Score=50.18 Aligned_cols=94 Identities=9% Similarity=-0.005 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCG--CEYSLEMLNKVVK 151 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~ 151 (465)
|...+..+.+.|++++|...|+.+.+..+.+ +.++..+...+...|++++|...|+.+.+.- -+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555555443322 2344445555555555555555555544321 0111222223333
Q ss_pred HHHcCCCHHHHHHHHHHhh
Q 048269 152 TLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 152 ~~~~~~~~~~a~~~~~~m~ 170 (465)
++...|+.++|..+|+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444455555555554444
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.015 Score=52.18 Aligned_cols=261 Identities=10% Similarity=-0.031 Sum_probs=150.5
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHh--hh--CCC-CCCHHHHHHHHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVND----KTFKIALMTLAEVRELKKMVNFFHIM--ND--CGC-EYSLEMLNKVVKT 152 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~ll~~ 152 (465)
.-+++.|+....+.+|+...+.|..+. .+|..+..+|.-.+++++|+++...= .. .|- .-.......|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 457888999999999999888887543 35667777888888888888865321 11 010 0011111223333
Q ss_pred HHcCCCHHHHHHHHHHhh-----cCC-CCCHHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH-
Q 048269 153 LCQRKLVVEAKYLILKLS-----EWI-KPNEIAYGWLIKGYCDVGD--------------------LIEASKIWNLMTD- 205 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~-----~~~-~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~- 205 (465)
+--.|.+++|+-.-.+-. -|. ......+-.+...|...|+ ++.|.++|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 333455555543322211 000 0112233334444443332 2334444433221
Q ss_pred ---CCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 048269 206 ---EGFE-PSIDVVDKMIETFFKINKDDEAMKVFQMM----RVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK- 276 (465)
Q Consensus 206 ---~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~- 276 (465)
.|-. .-...|..|.+.|.-.|+++.|+..-+.- .+-|-.......+..+..++.-.|+++.|.+.|+....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 11234555666666678888887654432 22232222445778888899999999999988876542
Q ss_pred ---CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 277 ---RG-IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 277 ---~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
.| -.....+.-+|.+.|.-..++++|+..+.+-.. -....|-.|..+|...|..++|+.+...-++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 122455666778888888888888887775443 4456778888888888888888877665543
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.98 E-value=0.015 Score=44.14 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=77.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269 313 DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAA 392 (465)
Q Consensus 313 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 392 (465)
|..++..+|.++++.|+.+....+++..- |+.++...-..- ........|+..+..+++.+|+..|++..|+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 45678889999999999998888887664 555443111000 2236778899999999999999999999999
Q ss_pred HHHHHHHh-CCCCCCHhhHHHHHHHHhhc
Q 048269 393 KYVERVMN-RGVEVPRFDYNKFLHYYSNE 420 (465)
Q Consensus 393 ~~~~~m~~-~~~~p~~~~~~~ll~~~~~~ 420 (465)
++++...+ -++..+..+|..|++-+...
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999987 45777788999999877654
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.26 Score=44.97 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCcchHHHHH
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDEG---FEPSIDVVDKMIETFFK---INKDDEAMKVFQMMRVKRMDDLGLSTYRIVI 255 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 255 (465)
.|+-.|....+++..+++++.+.... +.-+..+-....-++.+ .|+.++|++++..+......+ ++.+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHH
Confidence 34445666666777777766665531 11122222233344445 566677777766644444444 666666666
Q ss_pred HHHHh---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHH---HHhc--C------
Q 048269 256 DWMCK---------RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL----REAYKVV---EEIE--K------ 311 (465)
Q Consensus 256 ~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~---~~~~--~------ 311 (465)
..|-. ....++|...|.+.-+. .||.+.--.++..+.-.|.. .+..++- ..+. +
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 55431 11255666666654433 23333322222222223321 1112222 1110 0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 312 PDISLYHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 312 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
.+-.-+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 55566778888999999999999999999865
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.92 E-value=0.0069 Score=41.08 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=46.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG 138 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (465)
-..|.+.+++++|+++++.+...++.+...+.....++.+.|++++|.+.|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567778888888888888888877777778888888888888888888888887753
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.85 E-value=0.37 Score=44.22 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcccC---------CCCCCCchHHH-HHHHHHHH
Q 048269 315 SLYHGLIKGLLRLRRAREATQVFREMIKRG-CEPTMHTYIMLLQGHLGKRG---------RKGPDPLVNFD-TIFVGGLV 383 (465)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~-~~li~~~~ 383 (465)
.+|...+..-.+..-.+.|..+|.+..+.| +.++...++.++..++.... ....-||...| +..+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 446667777777788899999999999888 67888888999988865555 12223444444 67788888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269 384 KAGKSLDAAKYVERVMNRGVEVP--RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ 446 (465)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 446 (465)
+.++-+.|..+|+..... +..+ ..+|..+|..-.+-|+...+..+-++|.+. .|-.++.+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~e 539 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIE 539 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHH
Confidence 999999999999976653 3333 458999999999999999998888888875 33444443
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.53 Score=46.05 Aligned_cols=336 Identities=11% Similarity=0.096 Sum_probs=195.7
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHH-----HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH--HHHH
Q 048269 56 VYLFFQYTQKAQPCFAHNSITFN-----RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVREL--KKMV 128 (465)
Q Consensus 56 a~~~f~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~ 128 (465)
-+++++......-|+..+..-|. .+++-+...+.+..|+++-..+...-.....+|......+.+..+. ++++
T Consensus 414 ~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vl 493 (829)
T KOG2280|consen 414 ELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVL 493 (829)
T ss_pred HHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHH
Confidence 34555555556667777776665 4577788889999999999887544333356777777777776433 2233
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWI----KPNEIAYGWLIKGYCDVGDLIEASKIWNLM 203 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 203 (465)
+..++=..... .....|..+.......|+.+.|..+++.=. .+. -.+..-+..-+.-+.+.||.+-...++-++
T Consensus 494 d~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl 572 (829)
T KOG2280|consen 494 DKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL 572 (829)
T ss_pred HHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH
Confidence 33322222222 344567777777788999999999887543 111 112334556677788889988888888777
Q ss_pred HHCCCCCcHHHHHHHH----------HHHHh------------cCCHHHHHHHH--HHHHH-cCCCCCCcchHHHHHHHH
Q 048269 204 TDEGFEPSIDVVDKMI----------ETFFK------------INKDDEAMKVF--QMMRV-KRMDDLGLSTYRIVIDWM 258 (465)
Q Consensus 204 ~~~g~~~~~~~~~~li----------~~~~~------------~g~~~~A~~~~--~~m~~-~~~~~~~~~~~~~li~~~ 258 (465)
... .+...+...+ .-+++ .++-..+...| +.... ..+.+ -.........++
T Consensus 573 k~~---~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~-r~~~lk~~a~~~ 648 (829)
T KOG2280|consen 573 KNK---LNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG-RIPALKTAANAF 648 (829)
T ss_pred HHH---HHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc-cchhHHHHHHHH
Confidence 653 1222222211 11111 11111111111 11000 00111 111233334444
Q ss_pred HhcCChHH----------HHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhc
Q 048269 259 CKRGKISQ----------AYTMLEEMF-KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRL 327 (465)
Q Consensus 259 ~~~~~~~~----------a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 327 (465)
.+.....- -.++.+.+. +.|.....-+.+--+.-+...|+-.+|.++-.+.+-||-..|-.=+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 44433111 112222222 1233444555666667778889999999998888889999988888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048269 328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPR 407 (465)
Q Consensus 328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (465)
++|++-+++-+.+.. +..|.-++.+| .+.|+.++|.+++-+... . .
T Consensus 729 ~kweeLekfAkskks------PIGy~PFVe~c-----------------------~~~~n~~EA~KYiprv~~--l---~ 774 (829)
T KOG2280|consen 729 KKWEELEKFAKSKKS------PIGYLPFVEAC-----------------------LKQGNKDEAKKYIPRVGG--L---Q 774 (829)
T ss_pred hhHHHHHHHHhccCC------CCCchhHHHHH-----------------------HhcccHHHHhhhhhccCC--h---H
Confidence 999887776665531 23344444444 889999999988876532 1 1
Q ss_pred hhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 408 FDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
-...+|.+.|++.+|.+..-+-+
T Consensus 775 ----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 775 ----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred ----HHHHHHHHhccHHHHHHHHHHhc
Confidence 34567777788877777655433
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.029 Score=48.92 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=38.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---CcchHHHHHHHHHh
Q 048269 188 CDVGDLIEASKIWNLMTDEGFEPSI----DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL---GLSTYRIVIDWMCK 260 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~ 260 (465)
.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+... .|. ....+-.+...+..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHH
Confidence 3344555555555555443 1221 23444445555555555555555555433 121 12223333344445
Q ss_pred cCChHHHHHHHHHHHHC
Q 048269 261 RGKISQAYTMLEEMFKR 277 (465)
Q Consensus 261 ~~~~~~a~~~~~~m~~~ 277 (465)
.|+.++|..+|+.+.+.
T Consensus 230 ~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555443
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.73 E-value=0.019 Score=43.52 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=50.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
|..++..+|-++++.|+.+....+++..-.-++.... ..+. .-......|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~----------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK----------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc----------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 3455666666666666666666666544322211000 0000 11223345666666666666
Q ss_pred HHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~ 188 (465)
|+..|++..|.++++... .+++.+..+|..|+.-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 666666666666666655 445555666666655443
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.68 E-value=0.21 Score=39.00 Aligned_cols=85 Identities=18% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
..++..+...+.+......++.+...+..+...++.++..|++.. ..+.++.++. ..+......+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444444555555555555555444444445555555555432 2222333321 011222233444455555
Q ss_pred CHHHHHHHHHHh
Q 048269 158 LVVEAKYLILKL 169 (465)
Q Consensus 158 ~~~~a~~~~~~m 169 (465)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.65 E-value=0.25 Score=39.55 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHH
Q 048269 209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-ADNLTLS 287 (465)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~ 287 (465)
-|+...-..|..+..+.|+..+|...|++... |+...|....-.+.++....+++..|...++++.+.+.. -++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 57888888899999999999999999999874 665558888888999999999999999999998876411 1233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 288 SIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
.+.+.|...|+..+|..-|+.... |+...-......+.+.|+.+++..-+.++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 677889999999999999999888 776655555566677787776665444443
No 215
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.63 E-value=0.087 Score=49.73 Aligned_cols=169 Identities=10% Similarity=0.073 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269 35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA 114 (465)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 114 (465)
..+++..+..-..-+.++.+.+....... ..-+.+ .....+.++..+-+.|..+.|+++..+-.. -
T Consensus 259 ~~ld~~~~~fk~av~~~d~~~v~~~i~~~-~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-----------r 324 (443)
T PF04053_consen 259 YELDLSELEFKTAVLRGDFEEVLRMIAAS-NLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH-----------R 324 (443)
T ss_dssp EE--HHHHHHHHHHHTT-HHH-----HHH-HTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-----------H
T ss_pred EEECHHHHHHHHHHHcCChhhhhhhhhhh-hhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH-----------H
Confidence 34566666666655666666655555422 111222 255588888888888888888877655322 2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 194 (465)
.....+.|+++.|.++.+. ..+...|..|.....++|+++-|++.|.+.. -|..|+-.|.-.|+.+
T Consensus 325 FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HH
T ss_pred hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHH
Confidence 4455667888888776433 3367788888888888888888888888876 3666777788888888
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777776652 45556666667777777776654
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.029 Score=44.25 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHc-----CCCCchhHHHHH
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV-----GLADLADIFQRY 448 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~~~~~~~~~~~ 448 (465)
...++..+...|++++|.++++++... .| |...|..++.++...|+...|.+.++++.+. |..|...+-..|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 455677788999999999999999984 45 6679999999999999999999999988644 898888887776
Q ss_pred HHH
Q 048269 449 GKK 451 (465)
Q Consensus 449 ~~~ 451 (465)
.++
T Consensus 143 ~~i 145 (146)
T PF03704_consen 143 REI 145 (146)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.59 Score=45.40 Aligned_cols=250 Identities=16% Similarity=0.121 Sum_probs=155.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH----------HHcCCCHHHHHHHHHHhhcCCCC
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT----------LCQRKLVVEAKYLILKLSEWIKP 175 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~~~~~~a~~~~~~m~~~~~~ 175 (465)
|.+..|..+.......-.++.|+..|-+.... +.......|-.. -+--|.+++|+++|-+|..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr---- 762 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR---- 762 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch----
Confidence 56677888888877777888888888665542 222111111111 1224788888888887752
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHH
Q 048269 176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF--EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI 253 (465)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 253 (465)
-...|..+.+.|||-.+.++++.-- .+. +.-...|+.+...+.....|++|.+.|..-. + -..
T Consensus 763 ----rDLAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-------~---~e~ 827 (1189)
T KOG2041|consen 763 ----RDLAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-------D---TEN 827 (1189)
T ss_pred ----hhhhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c---hHh
Confidence 1334677778888877776664321 111 1124578888888888888999988887532 1 123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHH
Q 048269 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREA 333 (465)
Q Consensus 254 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 333 (465)
.+.++.+..++++...+...+. -+....-.+..++.+.|.-++|.+.+-+...|. +.+..|...++|.+|
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHH
Confidence 4667777777766665555443 345556677888899999999988876665543 345677888899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 334 TQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 334 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.++-++.. -|...|...--.+.+ -.+.. .-.-|..+.+.|+.-.|.+++.+|.+
T Consensus 898 velaq~~~----l~qv~tliak~aaql--------l~~~~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 898 VELAQRFQ----LPQVQTLIAKQAAQL--------LADAN-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHhcc----chhHHHHHHHHHHHH--------Hhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 88877653 344433322111110 00000 01235566788888888888888865
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.48 E-value=0.018 Score=39.58 Aligned_cols=63 Identities=14% Similarity=0.038 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNR--GVE---VP-RFDYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56788899999999999999999998753 122 22 34788889999999999999999998775
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.46 E-value=0.044 Score=43.14 Aligned_cols=88 Identities=5% Similarity=-0.116 Sum_probs=46.8
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 161 (465)
.-+-..|++++|..+|.-+.-.++.+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 334455666666666665555555555555555555555566666666555544433 2233333344555555555566
Q ss_pred HHHHHHHhh
Q 048269 162 AKYLILKLS 170 (465)
Q Consensus 162 a~~~~~~m~ 170 (465)
|.+.|+...
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 655555554
No 220
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.44 E-value=0.061 Score=45.90 Aligned_cols=113 Identities=17% Similarity=0.044 Sum_probs=81.9
Q ss_pred HHHHHHhc--CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269 303 YKVVEEIE--KPDISLYHGLIKGLLRL-----RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD 375 (465)
Q Consensus 303 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 375 (465)
...|..+. +.|-.+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+- ++.-.....+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP-----KgkfiP~nvf 128 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP-----KGKFIPQNVF 128 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc-----ccccccHHHH
Confidence 44555555 26666777777766543 567777778899999999999999999999872 2222223344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccc
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEG 422 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 422 (465)
....-.|=+.. +-++.++++|...|+.||..+-..|++++.+.+-
T Consensus 129 Q~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 44444454443 4589999999999999999999999999988653
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.40 E-value=0.52 Score=42.01 Aligned_cols=167 Identities=13% Similarity=0.023 Sum_probs=98.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhh
Q 048269 250 TYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEA---DNLTLSSIIYGLLARGRLREAYKVVEEIEK---------PDISL 316 (465)
Q Consensus 250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~ 316 (465)
.|..+.+++.+..++.+++.+-+.-... |..| ......++..++...+.++++.+.|+...+ ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4445555555555555555554433321 2222 122334455666666777777777776655 22346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269 317 YHGLIKGLLRLRRAREATQVFREMIKR----GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAA 392 (465)
Q Consensus 317 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 392 (465)
|-.|-..|.+..++++|.-+..+..+. ++.-=..-|..+... -|..++...|....|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly------------------hmaValR~~G~LgdA~ 226 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY------------------HMAVALRLLGRLGDAM 226 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH------------------HHHHHHHHhcccccHH
Confidence 777778888888888887766655432 222212223333222 2455677888888888
Q ss_pred HHHHHHHh----CCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 393 KYVERVMN----RGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 393 ~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
+..++..+ .|-.+. ......+.+.|...|+.|.|..-++...
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 88887654 343333 2356677888888999998877666544
No 222
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.8 Score=41.67 Aligned_cols=249 Identities=12% Similarity=-0.016 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
.+..|+..+..++..-+. +..-|..-+..+...|++++|.--.+.-.+...-........-+++...++..+|.+.+
T Consensus 64 ~Y~nal~~yt~Ai~~~pd---~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPD---NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred hHHHHHHHHHHHHHhCcc---chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 445677777777444433 56667777777777788888776665554433211223333334444444444444333
Q ss_pred H---------------HhhhCCC-CCCHHHHHHHH-HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269 132 H---------------IMNDCGC-EYSLEMLNKVV-KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194 (465)
Q Consensus 132 ~---------------~~~~~~~-~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 194 (465)
+ .+..... +|....+..+- .++.-.|+.++|.+.--.+..-...+....-.=-.++.-.++.+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence 3 1111111 23334443332 45667899999998877776322333322222223344668899
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHH---HHHH----------HHhcCCHHHHHHHHHHHHHcCCCCC----CcchHHHHHHH
Q 048269 195 EASKIWNLMTDEGFEPSIDVVDK---MIET----------FFKINKDDEAMKVFQMMRVKRMDDL----GLSTYRIVIDW 257 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~~~~~~~---li~~----------~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~~li~~ 257 (465)
.+...|.+....+ |+...--. +... ..+.|++..|.+.|.+.+.. .|. +...|-....+
T Consensus 221 ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i--dP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 221 KAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI--DPSNKKTNAKLYGNRALV 296 (486)
T ss_pred HHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC--CccccchhHHHHHHhHhh
Confidence 9999999988763 55433222 2222 35679999999999998743 442 33345566667
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHhcC
Q 048269 258 MCKRGKISQAYTMLEEMFKRGIEADNLTLSSI---IYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~ 311 (465)
..+.|+..+|+.--+...+. |..-.-.+ ..++...+++++|.+-|+...+
T Consensus 297 ~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999988877654 44333222 3355667889999988888766
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.96 Score=44.38 Aligned_cols=295 Identities=11% Similarity=0.057 Sum_probs=138.1
Q ss_pred hCCCCCCHHHHHHH-----HhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChh--HHH-HHHHHHh
Q 048269 32 SCNFNLTHEFFLQI-----CNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNID--LFW-ETLQEMG 101 (465)
Q Consensus 32 ~~~~~~~~~~~~~~-----l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~-~~~~~~~ 101 (465)
+.|++++...+..+ +.++. ..+..|.++-.|+ .-+... +..+|......+.+..+.. +++ .+-+++.
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l--~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLL--NLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHh--CCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 45677776655432 32322 2567788888885 222222 2566666666666663221 222 3333332
Q ss_pred hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-------
Q 048269 102 RRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE----YSLEMLNKVVKTLCQRKLVVEAKYLILKLS------- 170 (465)
Q Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------- 170 (465)
.. ..+...|..+.+.....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.
T Consensus 502 ~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~ 580 (829)
T KOG2280|consen 502 AK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSS 580 (829)
T ss_pred cc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 22 234445777777777778888777776543332211 122234445555556666555554444432
Q ss_pred -----cCCCCCHHhHHHHHH--------HHHhcCCHHHHHHHHHHHH------HCCCCCcHHHHHHHHHHHHhcCCHH--
Q 048269 171 -----EWIKPNEIAYGWLIK--------GYCDVGDLIEASKIWNLMT------DEGFEPSIDVVDKMIETFFKINKDD-- 229 (465)
Q Consensus 171 -----~~~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~~m~------~~g~~~~~~~~~~li~~~~~~g~~~-- 229 (465)
...+.....|..+++ .+.+.++-..+...|..=. ..|..|+.. .....+.+.....
T Consensus 581 l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 581 LFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFE 657 (829)
T ss_pred HHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhH
Confidence 112333444444443 1122233222222221110 122233322 2223333332211
Q ss_pred --------HHHHHHHHHHHc-CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048269 230 --------EAMKVFQMMRVK-RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300 (465)
Q Consensus 230 --------~A~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 300 (465)
+-+++.+.+..+ |..- ..-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..++++
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f-~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kwe 732 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSF-VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWE 732 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHH
Confidence 111222222211 1111 22234444455556666666666555543 345666666666666666666
Q ss_pred HHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 301 EAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREM 340 (465)
Q Consensus 301 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 340 (465)
+-+++-+..+. +.-|.-++.+|.+.|+.++|.+++-+.
T Consensus 733 eLekfAkskks--PIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 733 ELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHhccCC--CCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 65555444332 455566666666666666666665544
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.31 E-value=0.15 Score=47.28 Aligned_cols=66 Identities=8% Similarity=-0.129 Sum_probs=57.0
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
.+...|+.+..+|.+.|++++|+..|++..+.++.+. .+|..+..+|...|+.++|+..++...+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999888877554 45889999999999999999999988875
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.27 E-value=0.03 Score=37.86 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=20.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
|.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333344444444444443332 1123333333344444444444444444443
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.23 E-value=0.71 Score=44.35 Aligned_cols=91 Identities=10% Similarity=0.024 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCC-ChH------HHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLV-NDK------TFKIALMTLAE----VRELKKMVNFFHIMNDCGCEYSLEM 145 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 145 (465)
+..++...+=.|+-+.+++.+....+.+-. .+. +|+.++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445555555666666776666665443322 211 23333333322 34455666666666554 345444
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHHHh
Q 048269 146 LNKV-VKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 146 ~~~l-l~~~~~~~~~~~a~~~~~~m 169 (465)
|... .+.+...|++++|++.|++.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 4332 23444556666666666653
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.22 E-value=0.37 Score=44.82 Aligned_cols=149 Identities=12% Similarity=0.001 Sum_probs=96.6
Q ss_pred ChhHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 52 SWRPVYLFFQYTQKAQPCFAH-NSITFNRMVDIIGK---------SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
+.+.|+.+|..++ ......| ....|..+..++.. .....+|.++.+...+.+..++.+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~-~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQ-NKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHh-hcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4567999999995 2222233 34555544443322 23445677888888888888888888888888888
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 048269 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKI 199 (465)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 199 (465)
++++.|...|++....+ +-...+|......+.-.|+.++|.+.+++.. +-...-.......++.|+..+ ++.|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88999999999888764 3344555555556667888999988888844 322333344444455666544 5667766
Q ss_pred HHHH
Q 048269 200 WNLM 203 (465)
Q Consensus 200 ~~~m 203 (465)
|-+-
T Consensus 430 ~~~~ 433 (458)
T PRK11906 430 YYKE 433 (458)
T ss_pred Hhhc
Confidence 6543
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.21 E-value=1 Score=41.62 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=68.4
Q ss_pred hcCC-HHHHHHHHHHhcC---CCHhhHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHH-
Q 048269 295 ARGR-LREAYKVVEEIEK---PDISLYHGLIK----GLLR---LRRAREATQVFREMIKRGCEPTMHT----YIMLLQG- 358 (465)
Q Consensus 295 ~~~~-~~~a~~~~~~~~~---~~~~~~~~li~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~- 358 (465)
+.|. -++|.++++.+.. -|...-|.+.. +|.+ ...+.+-+.+-+-+.+.|+.|-... -|.+-.+
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3344 6777777777776 44444443322 2222 2334444455455556677764322 2222222
Q ss_pred -hhcccC----------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 048269 359 -HLGKRG----------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNK 412 (465)
Q Consensus 359 -~~~~~~----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (465)
+...++ -..+.|++.+|..++-++....++++|..++..+ +|+..++++
T Consensus 471 yLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 112222 4567899999999999999999999999999875 566666653
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.19 E-value=0.7 Score=44.51 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 179 AYGWLIKGYCDVGDL--IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 179 ~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
.++..=++|.+..+. -+.+.-+++++++|-.|+... +...|+-.|++.+|-++|.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344444555555443 344445566677776676543 23344445566666665543
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.57 Score=40.68 Aligned_cols=143 Identities=8% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCC-CCHHhHHHHHHHHHhcCCHHH
Q 048269 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK-PNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~ 195 (465)
.....|++.+|...|....... +-+...--.+..+|...|+.+.|..++..+..... ........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4455666666666666666543 23344445566666777777777777766652111 111111222333444444444
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
...+-...-.. +-|...-..+...+...|+.+.|.+.+-.+......-.|...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444332 124555556666666677777776666655554333335555556666555555
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.16 E-value=0.35 Score=38.22 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
.....+...|++++|..+|.-+.-.+ +-+..-+..|..++-..+++++|+..|.....-..-|+..+-....+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 33445667899999999998887765 44566677788888888899999999888662223455556667788888899
Q ss_pred HHHHHHHHHHHHHC
Q 048269 193 LIEASKIWNLMTDE 206 (465)
Q Consensus 193 ~~~a~~~~~~m~~~ 206 (465)
.+.|...|....++
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988888773
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.021 Score=39.26 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 249 STYRIVIDWMCKRGKISQAYTMLEEMFKR----GIE-AD-NLTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
.+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..+|...|++++|.+.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35566666666666666666666665432 110 11 23344444445555555555555443
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=1 Score=39.23 Aligned_cols=149 Identities=13% Similarity=0.016 Sum_probs=102.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
-.......|++.+|..+|.........+...-..++.+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456678899999999999888877677788888999999999999999999887643222222222334555555555
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHhcCCHHH
Q 048269 160 VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~ 230 (465)
.+...+-.+.-. .+.|...-..+...+...|+.+.|.+.+-.+.+. |. -|...-..++..+.-.|.-+.
T Consensus 220 ~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCH
Confidence 555555554442 2457777888888899999999998876666553 33 355566677777766664443
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.89 Score=38.31 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIM 134 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~ 134 (465)
.|.....+|....++++|...+...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444444455555555444443
No 235
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.86 E-value=0.39 Score=45.47 Aligned_cols=131 Identities=10% Similarity=0.046 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 188 (465)
.-.+.++..+-+.|..+.|+++-. |+. .-.....+.|+++.|.++.++.. +...|..|.....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHH
Confidence 334555555555555555555421 111 11223344555555555433332 4445555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
+.|+++-|++.|.+... |..|+-.|.-.|+.+...++.+.....| -++....++...|+.++..
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHH
Confidence 55555555555554432 3344444455555554444444443332 1333344444445555544
Q ss_pred HHHH
Q 048269 269 TMLE 272 (465)
Q Consensus 269 ~~~~ 272 (465)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.94 Score=45.06 Aligned_cols=76 Identities=12% Similarity=0.246 Sum_probs=33.2
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048269 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 234 (465)
+.|++++|...|-+-..-+.|. .+|.-|........--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.++
T Consensus 380 ~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred hcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 3455555554444433222221 2233334444444444444455444432 333334455555555555554444
Q ss_pred HH
Q 048269 235 FQ 236 (465)
Q Consensus 235 ~~ 236 (465)
.+
T Consensus 454 I~ 455 (933)
T KOG2114|consen 454 IS 455 (933)
T ss_pred Hh
Confidence 43
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.79 E-value=0.57 Score=35.26 Aligned_cols=63 Identities=22% Similarity=0.129 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 438 (465)
++..+..+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 444555668999999999999998763 468889999999999999999999999999999985
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.71 E-value=1.1 Score=38.12 Aligned_cols=59 Identities=14% Similarity=0.324 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPS---IDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
.+.+-|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456788888888888888888876 2222 334566777888888888888777666544
No 239
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.70 E-value=0.83 Score=36.48 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=88.3
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK 276 (465)
Q Consensus 197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 276 (465)
.++++.+.+.|++|+...+..+++.+.+.|++.....++. .++.+ |.......+-.+. +....+.++--+|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~-DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIP-DSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccC-CcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3556666778888999999999999999988766555443 56666 5544444443332 233344444444443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 277 RGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 277 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
. =...+..++..+...|++-+|.++.+.....+......++.+..+.++...-..+|+-..+.
T Consensus 87 R----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred H----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 01135667778888999999999988876654455566777777777776666666666543
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.68 E-value=0.18 Score=43.20 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=54.1
Q ss_pred CCCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc----------------CCHHHHH
Q 048269 174 KPNEIAYGWLIKGYCD-----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI----------------NKDDEAM 232 (465)
Q Consensus 174 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~ 232 (465)
..|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+- .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3344455555544432 245555556666666667777777776666655332 1223466
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHHhcCC
Q 048269 233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK 263 (465)
Q Consensus 233 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~ 263 (465)
+++++|...|+.| |..+-..+++++.+.+.
T Consensus 144 ~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMP-DKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence 7777777777777 77777777777766664
No 241
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.67 E-value=0.83 Score=36.25 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=79.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH---H
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN--DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML---N 147 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~ 147 (465)
+...|..-+. +.+.+..++|+.-|..+.+.|.-+ .-............|+...|...|+++-...-.|-..-- .
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444443 345566778888888777776532 222333344566777788888888777664333332211 1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
.-...+...|.++......+.+. .+.+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11223456777777777777766 555555566666766777777777777777777653
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.66 E-value=2.2 Score=41.06 Aligned_cols=85 Identities=12% Similarity=-0.019 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCcHHHHHHHHHHHHhcCCHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG--F-EPSIDVVDKMIETFFKINKDDEAMK 233 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~A~~ 233 (465)
...+.|.++++.+....|-...-.-.-.+.+...|++++|++.|+...... . +.....+-.+.-++.-..+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 345566666666653333222222223344455566666666666543210 0 1122233344445555666666666
Q ss_pred HHHHHHHc
Q 048269 234 VFQMMRVK 241 (465)
Q Consensus 234 ~~~~m~~~ 241 (465)
.|..+.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 66666654
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.46 Score=44.13 Aligned_cols=65 Identities=12% Similarity=-0.119 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE---IAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 141 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
.+...++.+..+|.+.|++++|+..|++...-.+-+. .+|..+..+|...|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555442111122 2355555555555555555555555554
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.54 E-value=0.043 Score=32.72 Aligned_cols=39 Identities=5% Similarity=-0.058 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA 114 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 114 (465)
++..+...|.+.|++++|.++|+++.+..+.+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 455666666666777777777766666666555555444
No 245
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=2.1 Score=39.64 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 048269 212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTL-SSII 290 (465)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li 290 (465)
..+|...++.-.+..-.+.|..+|-+..+.++...++..+++++.-++ .|+...|.++|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 456777888888888889999999999988855448888999988776 56778899999865544 3344444 4566
Q ss_pred HHHHhcCCHHHHHHHHHHhcC---CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048269 291 YGLLARGRLREAYKVVEEIEK---PD--ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 359 (465)
..+...++-..|..+|+.... .+ ...|..+|.-=..-|+...+..+=++|.. +.|...+.......+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 777888999999999986554 22 56788888887888888888888777774 356665555555555
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.48 E-value=1.4 Score=37.60 Aligned_cols=181 Identities=8% Similarity=-0.068 Sum_probs=108.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
=...-.+.|++++|.+.|+.+....+. +..+.-.++.++.+.++++.|+...++....-.......|-.-|.+++..
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 344556788899999999988876653 45567777788888889999988888877743222223344445544421
Q ss_pred -------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH
Q 048269 157 -------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229 (465)
Q Consensus 157 -------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 229 (465)
.+...+...+..+. .++.-|=.+.-...|......+... =...=..+.+.|.+.|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~-----------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFK-----------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccCCccccCHHHHHHHHHHHH-----------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChH
Confidence 23333333333332 1122121111122222222222110 0000125667899999999
Q ss_pred HHHHHHHHHHHcCCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 230 EAMKVFQMMRVKRMDDLGLS---TYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.|..-++.|.+. .|.+.. .+-.+..+|...|-.+.|.+.-.-+...
T Consensus 185 AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999999987 442444 4556678899999999998887766654
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.53 Score=42.71 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=64.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 048269 314 ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAK 393 (465)
Q Consensus 314 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 393 (465)
..++..+..+|.+.+++..|++.-...+..+ ++|.... .+ =..++...|+++.|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL---yR--------------------rG~A~l~~~e~~~A~~ 312 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL---YR--------------------RGQALLALGEYDLARD 312 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH---HH--------------------HHHHHHhhccHHHHHH
Confidence 3457778888889999999998888887553 2233222 11 1345688899999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHh-hcc-chHHHHHHHHHHHHc
Q 048269 394 YVERVMNRGVEVPRFDYNKFLHYYS-NEE-GVVMFEEVGKKLREV 436 (465)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~-~~g-~~~~a~~~~~~~~~~ 436 (465)
.|+++++ +.|+......=+..|. +.. ..+...++|..|...
T Consensus 313 df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 313 DFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999987 6786665444444443 333 344557788888765
No 248
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.22 E-value=1.4 Score=39.34 Aligned_cols=130 Identities=11% Similarity=0.233 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc--C----CCHHHHHHHHHHhhcC----CCCCHHhHHHHHHHHHhcCCH
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ--R----KLVVEAKYLILKLSEW----IKPNEIAYGWLIKGYCDVGDL 193 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~m~~~----~~~~~~~~~~li~~~~~~g~~ 193 (465)
+++.+.+++.|.+.|+.-+..+|-+..-.... . .....|..+|+.|++. -.++-..+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788899999888888777654433333 2 2356788999999822 23455566666554 33333
Q ss_pred ----HHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269 194 ----IEASKIWNLMTDEGFEPSID--VVDKMIETFFKINK--DDEAMKVFQMMRVKRMDDLGLSTYRIVID 256 (465)
Q Consensus 194 ----~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 256 (465)
+.++.+|+.+.+.|+..+-. ....++..+....+ ...+.++++.+.+.|+++ ....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki-k~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI-KYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc-ccccccHHHH
Confidence 56778888888878765432 33333333222222 447888888899888887 6555655443
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.36 Score=43.74 Aligned_cols=96 Identities=19% Similarity=0.038 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHH-HHHHHHHH
Q 048269 143 LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSID-VVDKMIET 221 (465)
Q Consensus 143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~ 221 (465)
..+++.+.-++.+.+++..|++.-++...-.++|+...--=..++...|+++.|+..|+.+++. .|+.. +-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3445566667777777777777777766444666666666667777777777777777777764 44433 33344444
Q ss_pred HHhcCCH-HHHHHHHHHHHH
Q 048269 222 FFKINKD-DEAMKVFQMMRV 240 (465)
Q Consensus 222 ~~~~g~~-~~A~~~~~~m~~ 240 (465)
.-+..+. +...++|..|-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333333 334566666654
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.13 E-value=4.5 Score=42.24 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=46.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhH---HHHHHHHHhcCCHHH
Q 048269 256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLY---HGLIKGLLRLRRARE 332 (465)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~ 332 (465)
..+.....+++|.-.|+..-+ ..-.+.+|..+|++.+|..+..++..+-.... ..|+.-+...++.-+
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchh
Confidence 334445566666655554322 12345667777777777777777666322222 556666777777777
Q ss_pred HHHHHHHHH
Q 048269 333 ATQVFREMI 341 (465)
Q Consensus 333 a~~~~~~m~ 341 (465)
|-++..+..
T Consensus 1018 Aa~il~e~~ 1026 (1265)
T KOG1920|consen 1018 AAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHh
Confidence 777777764
No 251
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.02 E-value=2.4 Score=37.65 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=62.5
Q ss_pred HhcCChhHHHHHHHHHhhCC-CCChHH-------HHHHHHHHHhcC-CHHHHHHHHHHhhhC--------CCCCCH----
Q 048269 85 GKSRNIDLFWETLQEMGRRR-LVNDKT-------FKIALMTLAEVR-ELKKMVNFFHIMNDC--------GCEYSL---- 143 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~~~~-~~~~~~-------~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~---- 143 (465)
.+.|+++.|..++.+..... ..++.. +-.+.......+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888776544 222222 222222333444 776666666554432 112222
Q ss_pred -HHHHHHHHHHHcCCCH---HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 144 -EMLNKVVKTLCQRKLV---VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 144 -~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
.++..++.+|...+.. ++|.++++.+....+-.+..+..-++.+.+.++.+.+.+.+..|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 2344555556555543 33444444444222223444444455555566666676766666654
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.3 Score=34.45 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=15.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269 184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK 224 (465)
Q Consensus 184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 224 (465)
+..+...+.......+++.+...| ..+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333344444444444443333 1333344444444443
No 253
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.93 E-value=0.79 Score=35.35 Aligned_cols=82 Identities=5% Similarity=-0.054 Sum_probs=54.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV 149 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 149 (465)
++..+-.-.....+.|++++|.+.|+.+..+-+ -...+.-.++.++.+.+++++|...+++..+....--...|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 344444455566678888888888888877654 24567777888888888888888888888875422222334444
Q ss_pred HHHHH
Q 048269 150 VKTLC 154 (465)
Q Consensus 150 l~~~~ 154 (465)
+.+++
T Consensus 89 ~~gL~ 93 (142)
T PF13512_consen 89 MRGLS 93 (142)
T ss_pred HHHHH
Confidence 44444
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.91 E-value=0.38 Score=41.92 Aligned_cols=76 Identities=8% Similarity=-0.007 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh------cCCCCCHHhHHHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS------EWIKPNEIAYGWL 183 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~~~l 183 (465)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++. .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34444555555555555555555555443 3444555555555555555555555555443 3444554444444
Q ss_pred HHH
Q 048269 184 IKG 186 (465)
Q Consensus 184 i~~ 186 (465)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.66 E-value=1 Score=33.91 Aligned_cols=86 Identities=14% Similarity=0.030 Sum_probs=46.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHH---HHHHHHhc
Q 048269 221 TFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEADNLTLSS---IIYGLLAR 296 (465)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~---li~~~~~~ 296 (465)
+....|+.+.|++.|.+.... .|.....||.-..++.-.|+.++|++=+++..+. |.+ +.....+ -...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 345556666666666665533 4445666666666666666666666666655543 221 2222222 22234555
Q ss_pred CCHHHHHHHHHHh
Q 048269 297 GRLREAYKVVEEI 309 (465)
Q Consensus 297 ~~~~~a~~~~~~~ 309 (465)
|+-+.|..-|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 6666666655544
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.56 E-value=3.5 Score=37.46 Aligned_cols=292 Identities=9% Similarity=-0.004 Sum_probs=185.3
Q ss_pred HHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 44 QICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDI--IGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 44 ~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
.+|..-..+...|.+.-... . .-+..|..-.-.++.+ -.-.|+++.|.+-|+.|...--...--...|.-.--+.
T Consensus 91 GliAagAGda~lARkmt~~~-~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 91 GLIAAGAGDASLARKMTARA-S--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhccCchHHHHHHHHHH-H--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhc
Confidence 44544455777777766554 1 1233455555555544 34569999999999999743111111233344444677
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHh--HHHHHHHHHh---cCCHH
Q 048269 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIA--YGWLIKGYCD---VGDLI 194 (465)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~--~~~li~~~~~---~g~~~ 194 (465)
|+.+.|..+-+..-+.- +.-...+...+...+..|+++.|+++++.-. .-+.+++.- -..|+.+-.. ..|..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 99999998888876643 3345677889999999999999999999876 445555432 2233333221 23455
Q ss_pred HHHHHHHHHHHCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 195 EASKIWNLMTDEGFEPSIDV-VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
.|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+....| ..+ .+..+.+.|+. +..-++.
T Consensus 247 ~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---~ia--~lY~~ar~gdt--a~dRlkR 317 (531)
T COG3898 247 SARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---DIA--LLYVRARSGDT--ALDRLKR 317 (531)
T ss_pred HHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---HHH--HHHHHhcCCCc--HHHHHHH
Confidence 55554444433 4565432 2344578899999999999999999874433 333 23344566654 3333333
Q ss_pred HHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 048269 274 MFKR-GIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLL-RLRRAREATQVFREMIKRGCEPT 348 (465)
Q Consensus 274 m~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~ 348 (465)
..+. ..+| +......+..+-...|++..|..--+.... |....|-.|...-. ..|+-.++...+.+.++..-.|.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 3221 1233 455666677888889999998887777766 77777777766543 45999999999988887644443
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.44 E-value=1.5 Score=32.99 Aligned_cols=87 Identities=5% Similarity=-0.133 Sum_probs=51.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH---HHHHHHHcCCCH
Q 048269 83 IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN---KVVKTLCQRKLV 159 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~ 159 (465)
+++..|+.+.|++.|.+....-+....+||.-..++.-.|+.++|++-+++..+..-........ .-...|-..|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 55667777777777777766655566677777777777777777777777666632122222222 222234455666
Q ss_pred HHHHHHHHHh
Q 048269 160 VEAKYLILKL 169 (465)
Q Consensus 160 ~~a~~~~~~m 169 (465)
+.|..=|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 6666555554
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=3.2 Score=36.84 Aligned_cols=154 Identities=6% Similarity=-0.162 Sum_probs=95.7
Q ss_pred HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH----HHHHHHHHcCCCHH
Q 048269 85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML----NKVVKTLCQRKLVV 160 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~ 160 (465)
.-.|++.+|-..++++.+.-+.+.-++...-.+|.-.|+.......++.+... ..+|...| ..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34567777777777777766666666777777777788877777777777653 13343332 23334455678888
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GFEPSIDVVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
+|++.-++..+-.+-|..+-.++....-..|++.++.++..+-... +.-.-..-|=-..-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8888877776545667777777777777788888877765543221 0000111122223344556788888888865
Q ss_pred HH
Q 048269 238 MR 239 (465)
Q Consensus 238 m~ 239 (465)
=.
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=6.3 Score=39.60 Aligned_cols=184 Identities=13% Similarity=0.027 Sum_probs=119.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
.......-+..+.+..-++.|+.+.+.-....-.-..........+.+.|++++|...|-+-... +.|. .++.-
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 34455667788888888888877765432111112234455556677889999999988665542 2332 35666
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHHHHhcCCHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE-PSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A 231 (465)
|....++.+-..+++.+...--.+...-..|+.+|.+.++.++-.++.+..- .|.. -| ....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHH
Confidence 6777778888888888883334566677889999999999998887776654 3321 12 34556666777777777
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
.-+-..... +......+ +-..+++++|++++..+.
T Consensus 483 ~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 666554321 22333333 445688999999998763
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=1.3 Score=38.12 Aligned_cols=105 Identities=12% Similarity=0.023 Sum_probs=80.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-CCCHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG-C-EYSLEMLNK 148 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ 148 (465)
...|+.-+..+ +.|++..|...|....+..+ ..+.++..|..++...|++++|..+|..+.+.- - +--+..+-.
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34677666555 56669999999999988766 356788899999999999999999999887732 1 223466777
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHh
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIA 179 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 179 (465)
|..+..+.|+.++|...|+++....|-+..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 8888899999999999999998555544443
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=1.8 Score=37.29 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCC---CCHHhHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY---SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIK---PNEIAYG 181 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~ 181 (465)
...|+..+.. .+.|++..|...|....+.. +- ....+--|..++...|+++.|..+|..+....+ --+..+-
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 3466666654 56678999999999988853 22 223455588999999999999999999883322 2346677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
-|.....+.|+.++|...|++..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888999999999999999886
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.22 E-value=0.65 Score=40.51 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCcHHHHHHHH
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EGFEPSIDVVDKMI 219 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~li 219 (465)
++..++..+...|+++.+.+.++++..-.+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3455566666667777777777776655566667777777777777777777777766654 46666665555444
Q ss_pred HH
Q 048269 220 ET 221 (465)
Q Consensus 220 ~~ 221 (465)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.01 E-value=2.6 Score=33.73 Aligned_cols=136 Identities=10% Similarity=0.096 Sum_probs=82.5
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 128 VNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
.++++.+.+.+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 45566667778888888888888888888887666555543 33444444333332222 2223333333333332
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 208 FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 208 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
=...+..+++.+...|++-+|.++.+..... +......++.+-.+.+|...-..+++-....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113567778888889999888888765322 3334456777777777777666666655543
No 264
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.97 E-value=7.2 Score=39.10 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=29.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
.+|-.|.|+|++++|.++.......-......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 4778889999999999999655443334445677777777664
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.97 E-value=0.21 Score=29.73 Aligned_cols=37 Identities=3% Similarity=-0.075 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLN 147 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 147 (465)
++..+...+.+.|++++|+++|+++.+.. +-|...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHH
Confidence 45556666666666666666666666643 33444443
No 266
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.95 E-value=1.3 Score=45.91 Aligned_cols=199 Identities=13% Similarity=0.133 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHH
Q 048269 35 FNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIA 114 (465)
Q Consensus 35 ~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 114 (465)
--.+.++...+......+|+.-+.+++.. ...++ +..-| .|+.| .++++.|+.-+..+. ...|.-.
T Consensus 849 gtYDl~Lal~VAq~SqkDPkEyLP~L~el-~~m~~---~~rkF--~ID~~--L~ry~~AL~hLs~~~------~~~~~e~ 914 (1265)
T KOG1920|consen 849 GTYDLDLALLVAQKSQKDPKEYLPFLNEL-KKMET---LLRKF--KIDDY--LKRYEDALSHLSECG------ETYFPEC 914 (1265)
T ss_pred cccchHHHHHHHHHhccChHHHHHHHHHH-hhchh---hhhhe--eHHHH--HHHHHHHHHHHHHcC------ccccHHH
Confidence 34577788888888888999999999886 32221 11111 12222 356777777776664 2235555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH----HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV----KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV 190 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 190 (465)
+..--+.+.+.+|+.++ .|+...+.... .-+...+.+++|.-.|+..-. ...-+.+|...
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~ 978 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKEC 978 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHh
Confidence 66666778888888876 45555544444 444556788888877776541 23456788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 191 GDLIEASKIWNLMTDEGFEPSID--VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 191 g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
|+|++|+.+..++... -+.. +-..|+.-+...+++-+|-++..+.... | ... +..|++...+++|.
T Consensus 979 ~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~--~~a----v~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 979 GDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P--EEA----VALLCKAKEWEEAL 1046 (1265)
T ss_pred ccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H--HHH----HHHHhhHhHHHHHH
Confidence 9999999988877532 1222 2256777888888888888888777654 2 222 34455666778887
Q ss_pred HHHHHHH
Q 048269 269 TMLEEMF 275 (465)
Q Consensus 269 ~~~~~m~ 275 (465)
++.....
T Consensus 1047 rva~~~~ 1053 (1265)
T KOG1920|consen 1047 RVASKAK 1053 (1265)
T ss_pred HHHHhcc
Confidence 7766544
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=93.88 E-value=5.7 Score=37.29 Aligned_cols=130 Identities=7% Similarity=-0.034 Sum_probs=72.7
Q ss_pred HhH--HHHHHHHHhc-----CChhHHHHHHHHHh---hCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHhh
Q 048269 75 ITF--NRMVDIIGKS-----RNIDLFWETLQEMG---RRRLVNDKTFKIALMTLAEV---------RELKKMVNFFHIMN 135 (465)
Q Consensus 75 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 135 (465)
..| ...+++..+. ...+.|+.+|.+.. ..++.....|..+..++... ....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 5555555442 23457888899888 44433344555544443221 23445556666666
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 136 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
+.+ +-|......+..+..-.++++.|..+|++...-.+-...+|....-...-.|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 655 556666666666666666677777777776522233334444444444455777777777776544
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=2.5 Score=37.47 Aligned_cols=152 Identities=9% Similarity=-0.063 Sum_probs=96.0
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
..|...+|-..++++....|.|..++..-=.+|.-.|+.......+++..-. +++..+.+-....-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4567777777778877667778888887788888888888777777777643 2322334444455566677888888
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIE---ADNLTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
++.-++..+- .+.|.-.-.+....+-..|+..++.++..+-...--. .-...|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 8887776644 3435556666777777788888887776654322100 0111122223334555777788887764
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.56 E-value=0.19 Score=28.27 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVM 399 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (465)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788888888888888888854
No 270
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.40 E-value=2 Score=35.33 Aligned_cols=71 Identities=8% Similarity=0.027 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048269 91 DLFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIMND---CGCEYSLEMLNKVVKTLCQRKLVVEA 162 (465)
Q Consensus 91 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a 162 (465)
+.|.+.|-.+...+.. ++.....+...|. ..+.++++.++....+ .+-.+|+..+.+|+..+.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3455555555444442 2333333333332 4455555555554444 11234555555555555555555544
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.26 E-value=5.7 Score=35.28 Aligned_cols=62 Identities=6% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 214 VVDKMIETFFKINKDD---EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 214 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
++..++.+|...+..+ +|.++++.+... .|..+..+-.-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455555555555433 344444444433 2212344444455555566666666666666654
No 272
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.22 E-value=0.11 Score=28.82 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHH
Q 048269 62 YTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFW 94 (465)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 94 (465)
.++..+|. |..+|+.+...|...|++++|+
T Consensus 4 kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 33344444 6666666666666666666654
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.99 E-value=4.9 Score=33.83 Aligned_cols=187 Identities=13% Similarity=0.038 Sum_probs=81.8
Q ss_pred CChhHHHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269 88 RNIDLFWETLQEMGRRRLV--NDKTFKIALMTLAEVRELKKMVNFFHIMNDC-GCEYSLEMLNKVVKTLCQRKLVVEAKY 164 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 164 (465)
+....+...+......... ....+......+...+.+..+...+...... ........+......+...+....+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433332 2344555555555555555555555555431 113333444444445555555555555
Q ss_pred HHHHhhcCCCCCHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 165 LILKLSEWIKPNEIAYGWLIK-GYCDVGDLIEASKIWNLMTDEGF--EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
.+.........+......... .+...|+++.+...+........ ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 555554211111111222222 45555555555555555533110 012222222233344445555555555555443
Q ss_pred CCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269 242 RMDDL-GLSTYRIVIDWMCKRGKISQAYTMLEEMFK 276 (465)
Q Consensus 242 ~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 276 (465)
.+. ....+..+...+...++++.+...+.....
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 221 133344444444444455555555544443
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.99 E-value=1.7 Score=35.50 Aligned_cols=97 Identities=11% Similarity=-0.033 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEK------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 359 (465)
+..+...|.+.|+.+.|.+.|.++.+ .-...+-.+|......+++..+...+.+....--.+.......=+.++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44455555555666666555555554 122334456666666777777777666665432222222222222222
Q ss_pred hcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 360 LGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
-.-.+...+++.+|.+.|-+...
T Consensus 119 ------------------~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 119 ------------------EGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ------------------HHHHHHHhchHHHHHHHHHccCc
Confidence 11234567889998888776653
No 275
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.89 E-value=6.1 Score=34.61 Aligned_cols=137 Identities=9% Similarity=0.097 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHhhC-CC-CChHHHHHHHHHHHhc-C-CHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048269 88 RNIDLFWETLQEMGRR-RL-VNDKTFKIALMTLAEV-R-ELKKMVNFFHIMND-CGCEYSLEMLNKVVKTLCQRKLVVEA 162 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a 162 (465)
..+.+|+.+|+...-. .+ .++.+...+++..... + ....--++.+-+.. .|-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 3456777777743322 23 5777777777777662 2 22222233333332 33467788888889999999999999
Q ss_pred HHHHHHhh--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCcHHHHHHHHHHHHh
Q 048269 163 KYLILKLS--EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL-----MTDEGFEPSIDVVDKMIETFFK 224 (465)
Q Consensus 163 ~~~~~~m~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~li~~~~~ 224 (465)
.++++.-. .+...|...|..+|+.....||..-..++.++ +++.|+..+...-.++-+.+-+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99988877 35667888899999999999998877776654 2445667776666665555443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.69 E-value=7.3 Score=35.89 Aligned_cols=201 Identities=11% Similarity=0.048 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHH
Q 048269 218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI----EADNLTLSSIIYGL 293 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~li~~~ 293 (465)
...+.-+.|+|+...+........ .+ +...+.++... +.++.+++...++.....-. ......|.......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~-~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SP-EYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--Ch-hHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 356777888888866655544322 22 34444444433 77888888888877664310 01122233333333
Q ss_pred HhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-CCCCCCch
Q 048269 294 LARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-RKGPDPLV 372 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~~~~~~ 372 (465)
.+...+.+..++.+-....... ..+.....+.|++=.. ...++..++..++..-...-. ........
T Consensus 79 ~~lq~L~Elee~~~~~~~~~~~-----------~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~~l~~~~~~~~~~ 146 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLSQN-----------PQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRLVLSLILLPEELA 146 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhccc-----------HHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHhcccchhHHH
Confidence 3333333333332222110000 1112222333332221 345566666555543211111 01122345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV---PRFDYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
.+|..+...+.+.|.++.|...+.++...+... ++.+.-.-.+.+...|+.++|...++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678888999999999999999999998743221 334444556677788999999999998888
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.67 E-value=3.5 Score=31.26 Aligned_cols=135 Identities=14% Similarity=0.186 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
-.|..++..++..+.... .+..-+|.+|--....-+-+...++++.+-+- - |... .|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---F-Dis~----------C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---F-DISK----------CGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--GGG-----------S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---c-Cchh----------hcchHHHH
Confidence 346666666666666553 24455555555555555555555555544321 1 2211 12222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345 (465)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 345 (465)
..+-.+ | .+.......+..+...|+-+.-.++..++.+ +++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 77 ~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 77 ECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 222111 1 1223344445556666666666666666652 6666666666677777777777777777666664
No 278
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.55 E-value=5.4 Score=33.20 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=92.1
Q ss_pred CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 048269 88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLIL 167 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 167 (465)
|-+.-|.-=|.+.....+.-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++..|.+=+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHH
Confidence 3344444445555555554556788888888888888888888888777653323233333332 234577777776666
Q ss_pred HhhcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCC-
Q 048269 168 KLSEWIKPN--EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET-FFKINKDDEAMKVFQMMRVKRM- 243 (465)
Q Consensus 168 ~m~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~- 243 (465)
+.-...+.| ...|--++. ..-++.+|..-+.+--+ ..|..-|...|-. |...=..+.+.+-...--..+-
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 655222222 233333322 33345555543332221 1243334332222 2211111111111111100000
Q ss_pred --CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269 244 --DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278 (465)
Q Consensus 244 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 278 (465)
.. -+.||--+..-+...|+.+.|..+|+-.+..+
T Consensus 232 ~Ae~-LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 232 LAEH-LTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 00 24577778888888888888888888777663
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.45 E-value=0.34 Score=26.65 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577788888899999999999988886
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.25 E-value=0.097 Score=41.09 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++. . +..-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~-~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------S-NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------S-SSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------c-cccCHHHHHHHHHhcc
Confidence 4455555666666666666666555445566666666666666665666655541 1 2233344555555555
Q ss_pred ChHHHHHHHHH
Q 048269 263 KISQAYTMLEE 273 (465)
Q Consensus 263 ~~~~a~~~~~~ 273 (465)
.++.+.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 55555555544
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.08 E-value=11 Score=35.71 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNLMTDEG-FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 256 (465)
.+-..|..++-+.|+.++|++.|++|.+.. ..-+..+...|+.++...+.+.++..++.+..+...+..-...|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 333456666778899999999999987642 1113446778899999999999999999887543332212345666553
Q ss_pred H
Q 048269 257 W 257 (465)
Q Consensus 257 ~ 257 (465)
-
T Consensus 340 k 340 (539)
T PF04184_consen 340 K 340 (539)
T ss_pred H
Confidence 3
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=0.91 Score=39.73 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=72.5
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 048269 68 PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLE 144 (465)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (465)
.|...+..+...++..-....++++++..+-++...-- ....+-...++.+.+ -+.++++.++..=...|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 35566777777777777778888888888777654321 111223333443333 36678888888888888888888
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
+++.+|+.+.+.+++.+|.++...|.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88888888888888888888888876
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.97 E-value=5.4 Score=31.89 Aligned_cols=134 Identities=7% Similarity=-0.005 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHhcCCC-ChhHHHHHHHHHhhcCCCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CChH--
Q 048269 35 FNLTHEFFLQICNNFPL-SWRPVYLFFQYTQKAQPCFAH-NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDK-- 109 (465)
Q Consensus 35 ~~~~~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-- 109 (465)
.+-+.+.+...|..... .++.|+.-|... ... |... -.-.--.........|+...|+..|.++-.... |-..
T Consensus 55 as~sgd~flaAL~lA~~~k~d~Alaaf~~l-ekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 55 ASKSGDAFLAALKLAQENKTDDALAAFTDL-EKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred cccchHHHHHHHHHHHcCCchHHHHHHHHH-Hhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 34466777777755544 788999999996 433 3332 222233445667888999999999999876554 3211
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 110 -TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 110 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
.--.-.-.+...|.++....-.+-+-..+-+.....-..|.-+-.+.|++.+|.+.|..+.
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 1112233457789999998888888776655556666778778889999999999999988
No 284
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=91.87 E-value=12 Score=37.27 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHHHhc
Q 048269 250 TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGLLRL 327 (465)
Q Consensus 250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~ 327 (465)
.|..-+..+..+++.. ....+.+...-.-.+......++..|.+.|-.+.|..+.+.+-. -...-|..-+..+.+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra 451 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRA 451 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
Confidence 3444444444333322 44444444443334556667777888888888888887776554 2233455555666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCC
Q 048269 328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGG--LVKAGKSLDAAKYVERVMNRGVEV 405 (465)
Q Consensus 328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p 405 (465)
|+...+-.+-..+.+.....+......++...... ..+.+....|..+=+. ..+.|++.+|.+.+-.+...++.|
T Consensus 452 ~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~---~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~P 528 (566)
T PF07575_consen 452 GDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSP---MLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAP 528 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcch---hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCc
Confidence 66666555555554332222222222222211000 0011111111111111 134477777777777777666656
Q ss_pred CHhh
Q 048269 406 PRFD 409 (465)
Q Consensus 406 ~~~~ 409 (465)
...-
T Consensus 529 k~f~ 532 (566)
T PF07575_consen 529 KSFW 532 (566)
T ss_dssp ----
T ss_pred HHHH
Confidence 5443
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.75 E-value=15 Score=36.45 Aligned_cols=183 Identities=10% Similarity=-0.016 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHH---HHhcCCHHHHHHHHHHhhh-------CCCCCCHHHHHHHHHHHHcCC--
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMT---LAEVRELKKMVNFFHIMND-------CGCEYSLEMLNKVVKTLCQRK-- 157 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~-- 157 (465)
...|.+.++.....|..........+.. .....+.+.|+.+|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4568888888777776443333333322 4466788889998888866 44 3334556666666643
Q ss_pred ---CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH--hcCCHHHH
Q 048269 158 ---LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD-VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF--KINKDDEA 231 (465)
Q Consensus 158 ---~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~A 231 (465)
+.+.|..++.+....-.|+....-..+..... ..+...|.++|....+.|.. ....+..++.... -..+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence 56678888887764335555544443333333 34677888888888887732 3332322222222 23467788
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI 279 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 279 (465)
..++.+.-+.| .| ....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 384 ~~~~k~aA~~g-~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHcc-Ch-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88888887776 22 21112222233333 667777777766666654
No 286
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.50 E-value=5.4 Score=30.89 Aligned_cols=85 Identities=6% Similarity=-0.006 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCC-ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHH
Q 048269 39 HEFFLQICNNFPL-SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALM 116 (465)
Q Consensus 39 ~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 116 (465)
...+..-...+.. +++.|...|+.+..+-|.-.-...+.-.++.+|.+.+++++|...+++..+.++.++ .-|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3444444445544 899999999998555555556778888999999999999999999999999887432 34555555
Q ss_pred HHHhcCC
Q 048269 117 TLAEVRE 123 (465)
Q Consensus 117 ~~~~~~~ 123 (465)
+++....
T Consensus 91 gL~~~~~ 97 (142)
T PF13512_consen 91 GLSYYEQ 97 (142)
T ss_pred HHHHHHH
Confidence 5554433
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.46 E-value=0.45 Score=26.77 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQE 99 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~ 99 (465)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 288
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.21 E-value=0.28 Score=27.23 Aligned_cols=31 Identities=3% Similarity=-0.011 Sum_probs=16.1
Q ss_pred HHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269 98 QEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
++..+.++.+..+|+.+...+...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444445555555555555555555543
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.15 E-value=0.57 Score=25.61 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
..|..+...|...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466677788888888888888888876
No 290
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.03 E-value=10 Score=33.26 Aligned_cols=137 Identities=13% Similarity=0.132 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHH-CCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 157 KLVVEAKYLILKLS--EWIKPNEIAYGWLIKGYCD-VG-DLIEASKIWNLMTD-EGFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 157 ~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
..+.+|+++|+... +.+--|..+...+++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.++|.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34566777777443 2345566777777776665 22 23333444444443 24567888888899999999999999
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHH
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE-----MFKRGIEADNLTLSSIIYGL 293 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~~~~~~~~~li~~~ 293 (465)
.++++..........|...|..+|+.-...|+..-..++.++ +++.|+..+...-..+-..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999888766522333788899999999999998777777654 33455666665555554443
No 291
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.76 E-value=9 Score=32.16 Aligned_cols=220 Identities=18% Similarity=0.110 Sum_probs=158.9
Q ss_pred cCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 048269 121 VRELKKMVNFFHIMNDCGCE-YSLEMLNKVVKTLCQRKLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEAS 197 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~ 197 (465)
.+....+...+......... .....+......+...+.+..+...+..... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666776666664322 1356777788888899999999999888763 45666777888888888889999999
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 198 KIWNLMTDEGFEPSIDVVDKMIE-TFFKINKDDEAMKVFQMMRVKRMDD---LGLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 198 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
..+.........+ ......... .+...|+++.|...+...... .| .....+......+...++.+.+...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 9999988754333 222223333 788999999999999998552 22 1333444444556778899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 274 MFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 274 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
............+..+...+...++.+.+...+..... ++ ...+..+...+...+..+.+...+......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88763321467778888888999999999999998887 43 344445555555667789999888888754
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.50 E-value=1.5 Score=35.73 Aligned_cols=63 Identities=11% Similarity=-0.104 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
.+..+...|++.|+.++|.+.|.++.+....+... .+-.+++...-.+++..+...+.+....
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34567788899999999999999999865555443 6778888888899999999988887765
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.38 E-value=7.6 Score=30.73 Aligned_cols=51 Identities=6% Similarity=-0.104 Sum_probs=23.6
Q ss_pred hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+.++.+++..++..+.-..+-....-..-...+.+.|++.+|+.+|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555443332222222222334455555555555555544
No 294
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=90.22 E-value=12 Score=32.88 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=19.2
Q ss_pred HHHHhhcCCCCchhHHhhhhhCCCCCCHHHHHHH
Q 048269 12 CTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQI 45 (465)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 45 (465)
..++.... ..-..+...|++.|..++..-|..+
T Consensus 36 vq~~~~~~-gdle~vak~ldssg~~l~~~rYgd~ 68 (412)
T KOG2297|consen 36 VQGLEDNA-GDLELVAKSLDSSGNDLDYRRYGDI 68 (412)
T ss_pred HHHHHhcC-ccHHHHHHHHHhccccccHHHHHHH
Confidence 33444333 3444577788888888776555443
No 295
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.08 E-value=11 Score=32.10 Aligned_cols=206 Identities=13% Similarity=0.119 Sum_probs=104.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
-...|..-..+|....++++|...+.+..+---.+..-|+ ..+.++.|.-+.+++.+. +--...|+.....
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 3556667778888899999999988877632111211121 123345555555555542 1223345666677
Q ss_pred HHcCCCHHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCcHHHHHHHHHHHHh
Q 048269 153 LCQRKLVVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---G--FEPSIDVVDKMIETFFK 224 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~~~~~~~~~li~~~~~ 224 (465)
|..+|..+.|-..+++.- +++.| +.|+++|.+...- + .+.-...+...-+.+++
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~P------------------d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKP------------------DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCH------------------HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 888888887777776643 43444 4444444433220 0 01112233444455666
Q ss_pred cCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcC
Q 048269 225 INKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG---IEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~~ 297 (465)
..++++|-..+..-... .-.+.--..|-..|-.+.-..|+..|.+.++.--+.+ -.-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 66666665554332110 0011011224444445555667777777776643322 112444555555554 345
Q ss_pred CHHHHHHHH
Q 048269 298 RLREAYKVV 306 (465)
Q Consensus 298 ~~~~a~~~~ 306 (465)
+.+++.+++
T Consensus 242 D~E~~~kvl 250 (308)
T KOG1585|consen 242 DIEEIKKVL 250 (308)
T ss_pred CHHHHHHHH
Confidence 555554443
No 296
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=3.7 Score=36.12 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=62.8
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH
Q 048269 137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW----IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI 212 (465)
Q Consensus 137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 212 (465)
.|.+....+...++..-....+++.++.++-+++.. ..|+. +-.+.++.+.+ -+.++++.++..=++.|+-||-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 344455555555655555566777777777766621 12221 22223333332 3556777777777777777787
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 213 DVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
.+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 78888888888877777777776666554
No 297
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.95 E-value=18 Score=34.42 Aligned_cols=93 Identities=8% Similarity=0.008 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII 290 (465)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 290 (465)
|.....+++..+..+-.+.-.+.+..+|..-|- +...|..++.+|..+ ..++-..+|+++.+..+. |...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 444555666666666666666666666665532 455666777777666 456666777766665442 333333444
Q ss_pred HHHHhcCCHHHHHHHHHHh
Q 048269 291 YGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~ 309 (465)
..|.+ ++.+.+...|.++
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHHH-hchhhHHHHHHHH
Confidence 44443 5555665555544
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.85 E-value=15 Score=33.29 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048269 118 LAEVRELKKMVNFFHIMNDC--GCEYSLEMLNKVVKTLCQRKLVVEAK 163 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~ 163 (465)
+....+.++|+..+..-... +......+|..+..+.++.|.+++++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 34445566666655544431 01112233444555555555555544
No 299
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.61 E-value=2.2 Score=30.15 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269 92 LFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMN 135 (465)
Q Consensus 92 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (465)
++.+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555555555554 555666666666666666666666666555
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.59 E-value=9 Score=30.35 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=7.9
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048269 189 DVGDLIEASKIWNLMTD 205 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~ 205 (465)
..|+|.+|.++|+.+.+
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 44444444444444433
No 301
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.36 E-value=29 Score=35.97 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCCcchHHH
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEG---FEPSIDVVDKMIETFFKINKD--DEAMKVFQMMRVKRMDDLGLSTYRI 253 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~~~~ 253 (465)
-|..|+..|...|+.++|+++|.+....- -.--..-+..+++-+.+.+.. +.++++-+......... ....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-heeeeec
Confidence 47788888999999999999998887631 011112233345544444444 55555555444332111 1111111
Q ss_pred ------------HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048269 254 ------------VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA 295 (465)
Q Consensus 254 ------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 295 (465)
.+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 223345566667777888887776666667777777776654
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.34 E-value=4.4 Score=33.37 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=49.8
Q ss_pred HHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCcHHHHHHHHHHHHhcCCH
Q 048269 153 LCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GFEPSIDVVDKMIETFFKINKD 228 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 228 (465)
+.+.|+ +.|.+.|-++. .+.--++.....|...|. ..|.+++..++....+. +-.+|+..+..|++.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 56666676766 444445555555555444 56777777777776652 2356777888888888888887
Q ss_pred HHHH
Q 048269 229 DEAM 232 (465)
Q Consensus 229 ~~A~ 232 (465)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7763
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=8.8 Score=29.90 Aligned_cols=52 Identities=8% Similarity=-0.103 Sum_probs=27.8
Q ss_pred hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
..++++++..+++.|.-..+.....-..-...+...|++.+|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665443322222222233345666666666666666654
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.10 E-value=16 Score=32.67 Aligned_cols=150 Identities=14% Similarity=0.200 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHhcC-------CCHhhHHHHHHHHHhcCC--
Q 048269 265 SQAYTMLEEMFKRGIEADNLTLSSIIYGLLA--R----GRLREAYKVVEEIEK-------PDISLYHGLIKGLLRLRR-- 329 (465)
Q Consensus 265 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~-- 329 (465)
+....+++.|.+.|+.-+..+|-+....... . .....|..+++.|++ ++-.++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456677788888877777666553333222 1 235677788888877 444555555544 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048269 330 --AREATQVFREMIKRGCEPTMH-TYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP 406 (465)
Q Consensus 330 --~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (465)
.+.+..+|+.+.+.|+..+.. -+.+-+-++. ..-.... ...+.++++.+.+.|+++.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~-------------------~~~~~~~-v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALS-------------------EGDDQEK-VARVIELYNALKKNGVKIK 216 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhc-------------------cccchHH-HHHHHHHHHHHHHcCCccc
Confidence 456778888888878776533 2222222220 0001112 5578889999999998887
Q ss_pred HhhHHHHHHHHhhccc----hHHHHHHHHHHHHc
Q 048269 407 RFDYNKFLHYYSNEEG----VVMFEEVGKKLREV 436 (465)
Q Consensus 407 ~~~~~~ll~~~~~~g~----~~~a~~~~~~~~~~ 436 (465)
...|..+.-...-.+. .+...++.+.+.+.
T Consensus 217 ~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 217 YMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred cccccHHHHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 7766655433332222 34444555555544
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.81 E-value=2.2 Score=30.52 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 92 LFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 92 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+..+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444 5555555555666555666666655555544
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.70 E-value=1.2 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777788888888888888887764
No 307
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.36 E-value=14 Score=30.93 Aligned_cols=178 Identities=14% Similarity=-0.014 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
|-+..|.-=|.+...-.|.-+.+||-|.-.+...|+++.|.+.|+...+....-+ .+...-.-++.--|++..|.+=|.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHH
Confidence 4444444445544422244457788888888889999999999998887632212 222222222334588888887776
Q ss_pred HHHHcCCCCCCcchHHHH-HHHHHhcCChHHHHHHH-HHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhcC--
Q 048269 237 MMRVKRMDDLGLSTYRIV-IDWMCKRGKISQAYTML-EEMFKRGIEADNLTLSSII-YGLLARGRLREAYKVVEEIEK-- 311 (465)
Q Consensus 237 ~m~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~-~~m~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~~~~-- 311 (465)
..-+. .|.|+ |.++ +-.-...-++.+|..-+ ++..+. |..-|...| ..|...=..+.+.+-...-..
T Consensus 158 ~fYQ~--D~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQD--DPNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHhc--CCCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 66655 33122 2221 22222344566665443 333322 434443333 233222222222222221111
Q ss_pred -----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 312 -----PDISLYHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 312 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
.=..+|-.+.+-+...|+.++|..+|+-.+..
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22456777888888999999999999988754
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.81 E-value=1.2 Score=24.32 Aligned_cols=27 Identities=0% Similarity=0.112 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+|..+..++...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.73 E-value=33 Score=34.57 Aligned_cols=354 Identities=11% Similarity=0.031 Sum_probs=182.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHHHHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCCHH---
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKTFKIALMTLA-EVRELKKMVNFFHIMNDCGCEYSLE--- 144 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~--- 144 (465)
+...|..|| ..|++.++.+.+...++ ..++-.+...+. ...+++.|+..+++....--.++..
T Consensus 29 ~l~~Y~kLI---------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLI---------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHH---------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 566677775 45677787777533332 235566666665 6788999999998775533223322
Q ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHhh---cC--CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCcHH
Q 048269 145 --MLNKVVKTLCQRKLVVEAKYLILKLS---EW--IKPNEIAYGWL-IKGYCDVGDLIEASKIWNLMTDEG---FEPSID 213 (465)
Q Consensus 145 --~~~~ll~~~~~~~~~~~a~~~~~~m~---~~--~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~ 213 (465)
....++..+.+.+... |.+.+++.. .+ ..+-...|..+ +..+...+|...|.+.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234566777776666 888888865 22 22333444444 333434489999999998886632 244555
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC--------CCCCcchHHHHHHHHH--hcCChHHHHHHHHHHHHC---C
Q 048269 214 VVDKMIETFF--KINKDDEAMKVFQMMRVKRM--------DDLGLSTYRIVIDWMC--KRGKISQAYTMLEEMFKR---G 278 (465)
Q Consensus 214 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~--------~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~---~ 278 (465)
++..++.+.. +.+..+++.+.++.+..... .++...+|..+++.++ ..|+++.+...++++... .
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~ 258 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI 258 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 5556665544 34556777777766633211 1224556777776654 567776777766665431 1
Q ss_pred CCCC-HHHH--HHHHHHHHhcCCHH--HHHHHHHHhcCCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHc--------
Q 048269 279 IEAD-NLTL--SSIIYGLLARGRLR--EAYKVVEEIEKPDISLYHGLIKG--LLRLRRAREATQVFREMIKR-------- 343 (465)
Q Consensus 279 ~~~~-~~~~--~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~-------- 343 (465)
.... ...+ ...+..-...+... ...-+|.-+.+.+......++.+ ++..+..++|.+.+.+..+.
T Consensus 259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~ 338 (608)
T PF10345_consen 259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS 338 (608)
T ss_pred hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence 1100 0000 00000000000000 00122222222333333333333 23334444554444443321
Q ss_pred CCCCC--------HHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-----Hhh
Q 048269 344 GCEPT--------MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV-EVP-----RFD 409 (465)
Q Consensus 344 ~~~p~--------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-----~~~ 409 (465)
...+. ...+...+..+ +.-..+...+-.+++..|...++.|.+..- .|+ ...
T Consensus 339 ~~~~~~sl~~~~~~~~~~~~l~~~--------------~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 404 (608)
T PF10345_consen 339 PSAPSESLSEASERIQWLRYLQCY--------------LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYP 404 (608)
T ss_pred CCCCCcCHHHHHHhHHHHHHHHHH--------------HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhH
Confidence 11111 11122222221 111223344567889999999999886311 121 224
Q ss_pred HHHHHHHHh--hccchHHHHHHHH--------HHHHcCCCCchhHHHHHHH
Q 048269 410 YNKFLHYYS--NEEGVVMFEEVGK--------KLREVGLADLADIFQRYGK 450 (465)
Q Consensus 410 ~~~ll~~~~--~~g~~~~a~~~~~--------~~~~~g~~~~~~~~~~~~~ 450 (465)
+..++.|.. ..|+.+.|+..|. .....+....-.++..+..
T Consensus 405 ~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 405 LLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 444444443 3599999999997 5555566666666666654
No 310
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.04 E-value=36 Score=34.30 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHhhHHHHHH-----HHhhccchHHHHHHHHHHHH
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRG-VEV--PRFDYNKFLH-----YYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~ 435 (465)
|...+. .|+..+..+......... -.| ....|..+.. .+...|+.++|....++...
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333344 788887766655543311 123 3346644443 35567999999988887654
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.97 E-value=28 Score=32.91 Aligned_cols=110 Identities=7% Similarity=0.007 Sum_probs=74.8
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL 105 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 105 (465)
+...|+.-+..|+.-.+..++...-.+++.+++....+ ... +.....+...+++.....|++++|..+.+-|....+
T Consensus 312 ~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~-~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei 388 (831)
T PRK15180 312 LFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV-EKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI 388 (831)
T ss_pred HHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch-hhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc
Confidence 56666666666666566666655555777777777665 333 234566677788888888888888888888877766
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG 138 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (465)
.++.+........-..|-++++.-.++++....
T Consensus 389 e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 389 EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 666666655555566677788888777776543
No 312
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=13 Score=36.04 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=35.1
Q ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 048269 154 CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMK 233 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 233 (465)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 34455555555544443 334455555555555555555555554432 2234444444444444434
Q ss_pred HHHHHHHc
Q 048269 234 VFQMMRVK 241 (465)
Q Consensus 234 ~~~~m~~~ 241 (465)
+-....+.
T Consensus 714 la~~~~~~ 721 (794)
T KOG0276|consen 714 LASLAKKQ 721 (794)
T ss_pred HHHHHHhh
Confidence 44444333
No 313
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.69 E-value=5.1 Score=33.36 Aligned_cols=50 Identities=4% Similarity=-0.011 Sum_probs=20.3
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
..+.+.++..+++...+.-.+..+.+...-..+++.++-.|++++|..-+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHH
Confidence 33334444444444444443333333333334444444444444443333
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.40 E-value=6.1 Score=32.93 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH---hhcCCCCCHHhHHHHHHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK---LSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---m~~~~~~~~~~~~~li~~ 186 (465)
|.+..+..+.+.+.+.+++...++-.+.+ +.|...-..+++.++-.|++++|..-++- |.....+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888889999999888777764 56677778888999999999999765554 335566777888888886
Q ss_pred HHh
Q 048269 187 YCD 189 (465)
Q Consensus 187 ~~~ 189 (465)
-.-
T Consensus 82 ea~ 84 (273)
T COG4455 82 EAA 84 (273)
T ss_pred HHH
Confidence 553
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.34 E-value=1.8 Score=24.89 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHh
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMG 101 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 101 (465)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555556666666666665555543
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.14 E-value=14 Score=28.78 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 048269 383 VKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~ 400 (465)
...|+|++|+++|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344445555555544443
No 317
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.11 E-value=32 Score=32.80 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=25.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASKIWNLM 203 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 203 (465)
+..++-+.|+.++|++.+.+|.+..+. +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444455555555555555421111 2234445555555555555555555554
No 318
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.98 E-value=5.4 Score=34.77 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 169 (465)
+++...+.|..+|.+.+|.++.+...... +.+...+..++..+...|+--.+.+-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445555666666666666666655544 445555555666666666655554444443
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=28 Score=33.96 Aligned_cols=132 Identities=13% Similarity=0.038 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI 225 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 225 (465)
.+.+.+.+.+.|..++|+++ .+|.... .....+.|+++.|.++..+.. +..-|..|.++..+.
T Consensus 617 rt~va~Fle~~g~~e~AL~~--------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL--------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhhHHhHhhhccchHhhhhc--------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 44555556666666666553 2222211 123345677777776655542 456677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048269 226 NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKV 305 (465)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 305 (465)
+++..|.+.|.... -|..|+-.+...|+.+....+-....+.|.. |....+|...|+++++.++
T Consensus 680 ~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 680 GELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred ccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHH
Confidence 88777777776432 3555666666777766666666665555532 2233456667777777777
Q ss_pred HHHhc
Q 048269 306 VEEIE 310 (465)
Q Consensus 306 ~~~~~ 310 (465)
+..-.
T Consensus 744 Li~t~ 748 (794)
T KOG0276|consen 744 LISTQ 748 (794)
T ss_pred HHhcC
Confidence 65543
No 320
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.37 E-value=24 Score=30.91 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 048269 377 IFVGGLVKAGKSLDAAKYVERV 398 (465)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m 398 (465)
.+|..+.+.|.+.+|+.+...+
T Consensus 130 Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 3677778888888888765443
No 321
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=85.32 E-value=26 Score=31.00 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=8.1
Q ss_pred hHHHHHHHHHhcCChH
Q 048269 250 TYRIVIDWMCKRGKIS 265 (465)
Q Consensus 250 ~~~~li~~~~~~~~~~ 265 (465)
+|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3444555555555544
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.27 E-value=39 Score=32.96 Aligned_cols=133 Identities=8% Similarity=-0.037 Sum_probs=84.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+-..|+.+|.--......+.+..++..+...-+.--.-|......=.+.|..+.+.++|++-.. |++.+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 3444555555444444556666666666655444344556666666777888888888887775 456666666665544
Q ss_pred HH-cCCCHHHHHHHHHHhh--cC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 153 LC-QRKLVVEAKYLILKLS--EW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 153 ~~-~~~~~~~a~~~~~~m~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
+. ..|+.+.....|+... -| .--....|...|.--...+++.....++++..+.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 4567777777777766 22 1223455667777667777788888888887764
No 323
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.05 E-value=2.4 Score=23.02 Aligned_cols=26 Identities=4% Similarity=0.144 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555554443
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.92 E-value=32 Score=31.65 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHh
Q 048269 386 GKSLDAAKYVERVMNRGVEVPR-FDYNKFLHYYS 418 (465)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~ 418 (465)
+..+++...|++..+ +.|+. ..|..+...+.
T Consensus 272 ~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 272 ESSDEILKYYKEATK--LDPSWEKAWHSWALFND 303 (352)
T ss_pred ccHHHHHHHHHHHHH--hChhHHHHHHHHHHHHH
Confidence 778888888888876 44533 35555544443
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.60 E-value=0.49 Score=37.04 Aligned_cols=53 Identities=11% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
+..+.+.+.++....+++.+...+... +....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~-~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKEN-NPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444445555555555555433222 44455555555555544444444444
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.10 E-value=3.4 Score=22.41 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677778888888888888888775
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.28 E-value=20 Score=27.99 Aligned_cols=80 Identities=9% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh--cC----CCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHHHHHHH
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLS--EW----IKPNEIAYGWLIKGYCDVGD-LIEASKIWNLMTDEGFEPSIDVVDKM 218 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~l 218 (465)
.|.++.-....+++....++++.+. .. -..+...|..++++..+..- --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444455555555554443 00 12344556666666655544 34456666777666666677777777
Q ss_pred HHHHHhc
Q 048269 219 IETFFKI 225 (465)
Q Consensus 219 i~~~~~~ 225 (465)
+.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7665544
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.00 E-value=28 Score=29.59 Aligned_cols=91 Identities=22% Similarity=0.311 Sum_probs=55.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----------------hcCCCHhhHHHHH
Q 048269 258 MCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE----------------IEKPDISLYHGLI 321 (465)
Q Consensus 258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~li 321 (465)
|.+..+.+-..++.+-....++..+..-...++ +...|+..+|...++. .-.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 334444443444444444444444444444433 3445555555554443 3337888788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269 322 KGLLRLRRAREATQVFREMIKRGCEPTMHT 351 (465)
Q Consensus 322 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 351 (465)
..|.+ +++++|.+++.++-+.|+.|....
T Consensus 247 ~~~~~-~~~~~A~~il~~lw~lgysp~Dii 275 (333)
T KOG0991|consen 247 QACLK-RNIDEALKILAELWKLGYSPEDII 275 (333)
T ss_pred HHHHh-ccHHHHHHHHHHHHHcCCCHHHHH
Confidence 77654 689999999999999999887544
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.89 E-value=3.2 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRG 402 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~ 402 (465)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567788888888888888887643
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.65 E-value=62 Score=33.32 Aligned_cols=221 Identities=14% Similarity=0.071 Sum_probs=109.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC----cH---HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEP----SI---DVVDKMIE-TFFKINKDDEAMKVFQMMRVK----RMDDLGLSTYRIVID 256 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~----~~---~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~ 256 (465)
...++.+|..+..++...--.| .. ..++.+-. .....|+++.|.++.+..... ...+ ....+..+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhH
Confidence 3456666666666654421111 11 12222221 223457778887777766543 1112 3445666677
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHHhcCCH--HHHHHHHHHhcC----------CCHhhHHH
Q 048269 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII-----YGLLARGRL--REAYKVVEEIEK----------PDISLYHG 319 (465)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~~~~--~~a~~~~~~~~~----------~~~~~~~~ 319 (465)
+..-.|++++|..+..+..+..-..+...+.... ..+...|+. .+....|..... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7777888888888877665542233333332222 224455532 222233332222 12233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 320 LIKGLLRLRRAREATQVFREMIKRG--CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVER 397 (465)
Q Consensus 320 li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (465)
+..++.+ .+.+..-...-.+-| ..|........+ ..|...+...|+.++|...+.+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~-------------------~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLAL-------------------SMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHH-------------------HHHHHHHHhcCCHHHHHHHHHH
Confidence 4444444 333332222222211 123322222221 1467778999999999999999
Q ss_pred HHhCCCCC----CHhhHHHHHHHH--hhccchHHHHHHHHH
Q 048269 398 VMNRGVEV----PRFDYNKFLHYY--SNEEGVVMFEEVGKK 432 (465)
Q Consensus 398 m~~~~~~p----~~~~~~~ll~~~--~~~g~~~~a~~~~~~ 432 (465)
+......+ +...-...+... ...|+.+.+.....+
T Consensus 644 ~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 644 LERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 88743333 222222222222 235888877777666
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.97 E-value=16 Score=26.04 Aligned_cols=62 Identities=5% Similarity=0.048 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHc-CCCCchhHHHHHHH
Q 048269 387 KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREV-GLADLADIFQRYGK 450 (465)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~~~~ 450 (465)
|.-++.+-++.+....+.|++.+..+.+++|.+.+++..|..+++.++.+ |- ...+|..+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566777777777788899999999999999999999999999988844 32 3446666654
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.38 E-value=37 Score=29.90 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK-----RGCEPTMHTY 352 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 352 (465)
++.....|..+|.+.+|.++.+.... .+...+-.++..++..|+--.|.+-++++.+ .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45566788899999999999988887 5667788888899999987777777766642 2666655443
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.85 E-value=3.1 Score=21.19 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 048269 376 TIFVGGLVKAGKSLDAAKYVE 396 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~ 396 (465)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566677777777777665
No 334
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.77 E-value=25 Score=27.45 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048269 287 SSIIYGLLARGRLREAYKVVEEIEK---------PDISLYHGLIKGLLRLRR-AREATQVFREMIKRGCEPTMHTYIMLL 356 (465)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 356 (465)
+.++.-....++......+++.+.. .+...|++++.+..+..- ---+..+|.-|.+.+.+++...|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555555555555555555555433 456678888888866555 445677888888878889999999888
Q ss_pred HHh
Q 048269 357 QGH 359 (465)
Q Consensus 357 ~~~ 359 (465)
.++
T Consensus 123 ~~~ 125 (145)
T PF13762_consen 123 KAA 125 (145)
T ss_pred HHH
Confidence 887
No 335
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.49 E-value=46 Score=30.33 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHH
Q 048269 91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ---RKLVVEAKYLIL 167 (465)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~ 167 (465)
+.-+.+++++.+.++.+.......+..+.+..+.++..+-++.+.... +-+...|...+..... .-.++....+|.
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 445667777766666666667777777777777777777777777653 3355566655554433 123444444444
Q ss_pred H
Q 048269 168 K 168 (465)
Q Consensus 168 ~ 168 (465)
+
T Consensus 127 ~ 127 (321)
T PF08424_consen 127 K 127 (321)
T ss_pred H
Confidence 4
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.48 E-value=22 Score=31.05 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhh-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 81 VDIIGKSRNIDLFWETLQEMGR-RRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
|.++++.++|.+++...-+--+ ....++.+...-|-.|.+.+.+..+.++-.....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4455555555544433222111 1112344444445555555555555555444443
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.26 E-value=4.7 Score=23.93 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=18.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 048269 320 LIKGLLRLRRAREATQVFREMIKRG 344 (465)
Q Consensus 320 li~~~~~~~~~~~a~~~~~~m~~~~ 344 (465)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777788888888888777544
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.23 E-value=4.3 Score=21.70 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=10.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048269 219 IETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~ 240 (465)
..++.+.|++++|.+.|+.+..
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.15 E-value=42 Score=29.15 Aligned_cols=264 Identities=13% Similarity=0.080 Sum_probs=137.9
Q ss_pred CCCCCCHHhHHHHHHHH-HhcCChhHHHHHHHHHhhCCC-C---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC
Q 048269 68 PCFAHNSITFNRMVDII-GKSRNIDLFWETLQEMGRRRL-V---NDKTFKIALMTLAEVRELKKMVNFFHIMNDC---GC 139 (465)
Q Consensus 68 ~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 139 (465)
.+-.||+..=|..-.+- .+...+++|+.-|++..+... . .-.+...++....+.+++++..+.|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34445554443322211 223456677777776665433 1 1234556677777778887777777776541 11
Q ss_pred --CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh------cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 048269 140 --EYSLEMLNKVVKTLCQRKLVVEAKYLILKLS------EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF--- 208 (465)
Q Consensus 140 --~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--- 208 (465)
.-+..+.|++++..+.+.+.+....+|+.-. .+...--.|-..|.+.|...|.+.+..++++++.+..-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1234456677766666666555555554422 11111122334667778888888888888887765311
Q ss_pred --------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCCcchHHHHHHHH-----HhcCChHHHHH-HHHH
Q 048269 209 --------EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR-MDDLGLSTYRIVIDWM-----CKRGKISQAYT-MLEE 273 (465)
Q Consensus 209 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~-----~~~~~~~~a~~-~~~~ 273 (465)
..-...|..=|..|....+-.+...+|++...-. -.| .+.... +|+-| .+.|++++|.. +|+.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 1123467777778888777777777777655332 122 333332 33333 45677777654 3343
Q ss_pred HHH---CCCCCCHH---HHHHHHHHHHhcCC----HHHHHHHHHHhcC-CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 274 MFK---RGIEADNL---TLSSIIYGLLARGR----LREAYKVVEEIEK-PDISLYHGLIKGLLRLRRAREATQVFRE 339 (465)
Q Consensus 274 m~~---~~~~~~~~---~~~~li~~~~~~~~----~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (465)
.+. .|- |-.. -|..|.+.+.+.|- ..+|.- .+. |.+...+.|+.+|-. ++..+-.++++.
T Consensus 258 FKNYDEsGs-pRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 258 FKNYDESGS-PRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HhcccccCC-cchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 332 332 2222 24444555555431 111100 000 555667777877754 445444444443
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.19 E-value=82 Score=31.97 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=95.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269 150 VKTLCQRKLVVEAKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 227 (465)
++-+.+.+.+++|+.+.+......+. -.......|..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34455677788888877665522221 3456677788888888888888888887754 56667777777777666
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH---------CCCC-------CCHHHHHHHHH
Q 048269 228 DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFK---------RGIE-------ADNLTLSSIIY 291 (465)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------~~~~-------~~~~~~~~li~ 291 (465)
......++ . .|-...++..|..++..+.. .+...-.++..+.-. .... -+...-..|+.
T Consensus 439 l~~Ia~~l---P-t~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPYL---P-TGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhccC---C-CCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 65443332 1 12221356789999988887 443333333332110 0001 11222345777
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCH
Q 048269 292 GLLARGRLREAYKVVEEIEKPDI 314 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~ 314 (465)
.|...+++..|..++-...+++.
T Consensus 514 LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHccChHHHHHHHHhccChHH
Confidence 88888889999888887776443
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.58 E-value=69 Score=30.79 Aligned_cols=178 Identities=10% Similarity=0.139 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048269 140 EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219 (465)
Q Consensus 140 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 219 (465)
+.|....-+++..++.+....-++.+..+|.. ...+...|..++..|... ..+.-..+|+++.+..+. |.+.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 34555556666667666666666666666661 123455666677777666 445666666666665432 333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 048269 220 ETFFKINKDDEAMKVFQMMRVKRMDDLG----LSTYRIVIDWMCKRGKISQAYTMLEEMFKR-GIEADNLTLSSIIYGLL 294 (465)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~ 294 (465)
.-|-+ ++.+.+..+|......-++... ...|..+...- ..+.+..+.+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 6666666666666544222100 11333333211 34555555555555433 33333444444555666
Q ss_pred hcCCHHHHHHHHHHhcC---CCHhhHHHHHHH
Q 048269 295 ARGRLREAYKVVEEIEK---PDISLYHGLIKG 323 (465)
Q Consensus 295 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 323 (465)
...++.+|.+++..+.+ .|+..-..++..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 67777777777776655 444444444443
No 342
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.51 E-value=48 Score=31.96 Aligned_cols=43 Identities=0% Similarity=-0.137 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 048269 56 VYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMG 101 (465)
Q Consensus 56 a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 101 (465)
....+..+ ....|+..+......++.. ..|+...|+.+++++.
T Consensus 185 i~~~L~~i-~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 185 LQDYSEKL-CKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHH-HHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 33444443 3334555555555544432 2466666666666543
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.32 E-value=11 Score=25.66 Aligned_cols=49 Identities=2% Similarity=-0.088 Sum_probs=38.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhccchHHHHHHHHH
Q 048269 384 KAGKSLDAAKYVERVMNRGVEVPR--FDYNKFLHYYSNEEGVVMFEEVGKK 432 (465)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (465)
...+.++|+..++...+.--.|.. .++..++.+++..|++++++.+.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999875333322 2788899999999999988876543
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.92 E-value=41 Score=27.76 Aligned_cols=92 Identities=8% Similarity=-0.047 Sum_probs=48.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048269 323 GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG 402 (465)
Q Consensus 323 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (465)
.+...|++++|...++.... .|....+..++.-- |.+.....|.+++|+..++...+.+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lR------------------LArvq~q~~k~D~AL~~L~t~~~~~ 156 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALA---QTKDENLKALAALR------------------LARVQLQQKKADAALKTLDTIKEES 156 (207)
T ss_pred HHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHH------------------HHHHHHHhhhHHHHHHHHhcccccc
Confidence 35556666666666665542 23333444333332 3444556666666666666555433
Q ss_pred CCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 403 VEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
+. ......-.+.+...|+-++|..-|++..+.+
T Consensus 157 w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 157 WA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 21 1222333445556666666666666666554
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.42 E-value=8.3 Score=20.80 Aligned_cols=27 Identities=4% Similarity=0.153 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 346
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.61 E-value=84 Score=30.77 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHH
Q 048269 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGL 324 (465)
Q Consensus 248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 324 (465)
..+|..-+.--...|+.+.+.-+|+...-.- ..=...|-..+.-....|+.+-|..++....+ ++...-..+-..+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456666666667777777777776654321 11112222233333334666666666655544 2222222222222
Q ss_pred H-hcCCHHHHHHHHHHHHHc
Q 048269 325 L-RLRRAREATQVFREMIKR 343 (465)
Q Consensus 325 ~-~~~~~~~a~~~~~~m~~~ 343 (465)
. ..|+++.|..+++.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh
Confidence 2 246777777777777654
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.11 E-value=19 Score=27.06 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=20.5
Q ss_pred HHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 95 ETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+-++.+...++ |++.+....+++|.+.+++..|.++|+-++.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444 4455555555555555555555555554443
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.10 E-value=28 Score=25.04 Aligned_cols=88 Identities=17% Similarity=0.297 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 263 KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 263 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
..++|..+-+.+...+-. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 346677776666655321 222222223467788999999998888877888888776553 56777777777777776
Q ss_pred cCCCCCHHHHHH
Q 048269 343 RGCEPTMHTYIM 354 (465)
Q Consensus 343 ~~~~p~~~~~~~ 354 (465)
+| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 66 455555543
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=75.03 E-value=35 Score=27.73 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=24.9
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 93 FWETLQEMGRRRLVNDKTFKIALMTLAEVRE-----------LKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 93 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
|+.-|++....++....++..+..++...+. +++|.+.|+..... .|+...|+.-+...
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3334444444444444555555555544322 33344444444332 45555555555443
No 350
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=74.94 E-value=70 Score=29.51 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------------CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 67 QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--------------LVNDKTFKIALMTLAEVRELKKMVNFFH 132 (465)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (465)
+.|...+......++... .|++..+...++++...+ .........++.+.. .++..+|..+++
T Consensus 191 ~~g~~i~~~a~~~l~~~~--~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~~~~~~i~~l~~ai~-~~~~~~a~~~~~ 267 (355)
T TIGR02397 191 KEGIKIEDEALELIARAA--DGSLRDALSLLDQLISFGNGNITYEDVNELLGLVDDEKLIELLEAIL-NKDTAEALKILD 267 (355)
T ss_pred HcCCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 445556666555555433 456666666665543211 112223444555554 478899999999
Q ss_pred HhhhCCCCC
Q 048269 133 IMNDCGCEY 141 (465)
Q Consensus 133 ~~~~~~~~~ 141 (465)
.+.+.|..|
T Consensus 268 ~l~~~~~~~ 276 (355)
T TIGR02397 268 EILESGVDP 276 (355)
T ss_pred HHHHcCCCH
Confidence 988877554
No 351
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.83 E-value=94 Score=30.93 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHhhcCCCCCCCHHhHHHHHHH-----HHhcCChhHHHHHHHHHhh-------CCCCChHHHHHHHHHHHh
Q 048269 53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDI-----IGKSRNIDLFWETLQEMGR-------RRLVNDKTFKIALMTLAE 120 (465)
Q Consensus 53 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~ 120 (465)
...|+.+|+.+ ...| +......+... ++...+++.|+..|+.+.+ .+ .+.....+..+|.+
T Consensus 228 ~~~a~~~~~~~--a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREA--AKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHH--Hhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhc
Confidence 35688888886 3334 44444444333 3355789999999998876 44 23356667777776
Q ss_pred cC-----CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHH--hcC
Q 048269 121 VR-----ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ-RKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYC--DVG 191 (465)
Q Consensus 121 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~--~~g 191 (465)
.. +.+.|+.+|....+.| .|+...+-..+..... ..+...|.++|...- .| .+...-+..++-... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCC
Confidence 43 6788999999999887 4565554444333333 246789999999987 43 333333333222222 335
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243 (465)
Q Consensus 192 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (465)
+...|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7888999999998887 3433333334444444 777777766666665544
No 352
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.75 E-value=59 Score=28.56 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHh--
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLR-- 326 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~-- 326 (465)
.=|.+++..+++.++....-+--+.--+..+.....-|-.|.+.+....+.++-..-.. .+..-|..++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 33677888888888776554433322223455566666678888888888877776655 334447777666554
Q ss_pred ---cCCHHHHHHHH
Q 048269 327 ---LRRAREATQVF 337 (465)
Q Consensus 327 ---~~~~~~a~~~~ 337 (465)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888876
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.71 E-value=7.3 Score=19.91 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.|..+...+...|+++.|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455667777888888888888887764
No 354
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.04 E-value=33 Score=24.83 Aligned_cols=72 Identities=3% Similarity=-0.044 Sum_probs=47.3
Q ss_pred HHHHhcCCHH--HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269 380 GGLVKAGKSL--DAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452 (465)
Q Consensus 380 ~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 452 (465)
..|....+.+ +..+-++.+....+.|++.+..+.+++|.+.+++..|..+++.++.+--. ...+|..+-+-+
T Consensus 16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lqEl 89 (108)
T PF02284_consen 16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQEL 89 (108)
T ss_dssp HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHHHH
Confidence 3344444333 56666777777788899999999999999999999999999998877322 234777666533
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.00 E-value=53 Score=27.26 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=44.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048269 324 LLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGV 403 (465)
Q Consensus 324 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 403 (465)
+.+.|++++|..-|.+.++. +++...-..+++ |..-..++.+.+.++.|+.-..+.++ +
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIl------------------y~Nraaa~iKl~k~e~aI~dcsKaie--l 163 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSIL------------------YSNRAAALIKLRKWESAIEDCSKAIE--L 163 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHH------------------HhhhHHHHHHhhhHHHHHHHHHhhHh--c
Confidence 45567777777777766653 222221111111 11223344566666666666666554 2
Q ss_pred CCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 404 EVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 404 ~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
.|+.. ....=..+|.+...++.|++=++++.+.
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 23211 2222233455556666666666666654
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.88 E-value=32 Score=24.74 Aligned_cols=10 Identities=30% Similarity=-0.004 Sum_probs=3.9
Q ss_pred CCCHHHHHHH
Q 048269 156 RKLVVEAKYL 165 (465)
Q Consensus 156 ~~~~~~a~~~ 165 (465)
.|++++|..+
T Consensus 52 rG~Yq~Al~l 61 (115)
T TIGR02508 52 RGDYQSALQL 61 (115)
T ss_pred cchHHHHHHh
Confidence 3333333333
No 357
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=72.40 E-value=23 Score=26.14 Aligned_cols=76 Identities=7% Similarity=0.000 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh--ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN--EEGVVMFEEVGKKLREVGLADLADIFQRYGKKMA 453 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~ 453 (465)
..++..|...|+.++|...++++... .-.......++..+.. ....+.+..++..+.+.+......+-..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~ 83 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLE 83 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34566678889999999999886421 1112244444444443 3556778888999999998887777777766544
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.37 E-value=13 Score=33.38 Aligned_cols=88 Identities=6% Similarity=-0.132 Sum_probs=51.4
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 161 (465)
..|.++|.+++|+++|.......+-++.++..-..+|.+..++..|+.--+.....+ ..-...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 456778888888888887776666566677777777888777776666555544432 1112223333333333344555
Q ss_pred HHHHHHHhh
Q 048269 162 AKYLILKLS 170 (465)
Q Consensus 162 a~~~~~~m~ 170 (465)
|.+=++...
T Consensus 184 AKkD~E~vL 192 (536)
T KOG4648|consen 184 AKKDCETVL 192 (536)
T ss_pred HHHhHHHHH
Confidence 555444443
No 359
>PRK09687 putative lyase; Provisional
Probab=71.96 E-value=72 Score=28.35 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCcHHHHH
Q 048269 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL----IEASKIWNLMTDEGFEPSIDVVD 216 (465)
Q Consensus 141 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~~~~~ 216 (465)
+|..+....+..+...|.. .+...+..+.. .+|...-...+.++...|+. +++...+..+... .++..+-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 4555555555555555532 22233333321 23445555555556666552 3456666555333 35555555
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048269 217 KMIETFFKINKD-----DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY 291 (465)
Q Consensus 217 ~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 291 (465)
..+.++...+.. ..+.+.+..... .+ +..+-...+.++.+.++. .+...+-.+.+. +|..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~-~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DK-STNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CC-CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHH
Confidence 555555554321 222333322222 22 445555666777666663 455555555543 34455555566
Q ss_pred HHHhcC-CHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCC
Q 048269 292 GLLARG-RLREAYKVVEEIEK-PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPD 369 (465)
Q Consensus 292 ~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 369 (465)
++.+.+ ....+...+..+.. ++..+-...+.++.+.++ ..|+..+-+..+.+. . ...
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~---~--~~~--------------- 240 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT---V--GDL--------------- 240 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc---h--HHH---------------
Confidence 666543 13344444444444 777777777777777777 345555555554321 1 112
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 048269 370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYS 418 (465)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 418 (465)
.+.++...|+. +|...+.++.+. .||..+-...+.+|.
T Consensus 241 --------a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 241 --------IIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred --------HHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 23444777774 677777777752 456666666666554
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.38 E-value=58 Score=27.04 Aligned_cols=88 Identities=11% Similarity=-0.009 Sum_probs=37.2
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 118 LAEVRELKKMVNFFHIMNDCGCEYSL-----EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
+.+.|++++|..-|...++.- ++.. ..|..-..++.+.+.++.|+.-..+...-.+....+..--..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 344555555555555554431 1111 1222223344455555555544444331111111111222234555555
Q ss_pred HHHHHHHHHHHHHC
Q 048269 193 LIEASKIWNLMTDE 206 (465)
Q Consensus 193 ~~~a~~~~~~m~~~ 206 (465)
++.|+.=|..+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555543
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.04 E-value=18 Score=24.64 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=25.1
Q ss_pred hcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHH
Q 048269 86 KSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
...+.++|+..|+...+.-..+ ..++..++.+++..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665543321 13555566666666666665554
No 362
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.50 E-value=1.3e+02 Score=30.68 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=81.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRL--VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL 158 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 158 (465)
++.+.+.+.+++|+++.+.....-. .........|..+.-.|++++|-...-.|.. -+..-|.--+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 4566777888888887766533221 1345677778888888888888877777764 244455555555555544
Q ss_pred HHHHHHHHHHhhcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHH------------------HHHCCCCCcHHHHHHHH
Q 048269 159 VVEAKYLILKLSEWI-KPNEIAYGWLIKGYCDVGDLIEASKIWNL------------------MTDEGFEPSIDVVDKMI 219 (465)
Q Consensus 159 ~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~------------------m~~~g~~~~~~~~~~li 219 (465)
..... .-+..+. ..+...|..++..+.. .+...-.++... ..+. .-+...-..|+
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 33322 1122111 1344555555555554 221111111111 0000 11223334578
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048269 220 ETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~ 239 (465)
..|...++++.|++++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 88888889998888776544
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.88 E-value=21 Score=21.62 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=22.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 048269 383 VKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH 415 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 415 (465)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777666666665554
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.34 E-value=20 Score=29.73 Aligned_cols=51 Identities=6% Similarity=-0.025 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR 103 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 103 (465)
+++......+|+ .+-....|++.+|..++.++...|+.++|.+..+++...
T Consensus 123 ~~~~l~~~~~~a-~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 123 DPEMLEAYIEWA-ERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555554 444455566666666666666666666666666655443
No 365
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.27 E-value=76 Score=27.13 Aligned_cols=23 Identities=4% Similarity=0.221 Sum_probs=14.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC
Q 048269 221 TFFKINKDDEAMKVFQMMRVKRM 243 (465)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~ 243 (465)
.-...+++.+|+++|+++-...+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455677777777777665543
No 366
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.24 E-value=44 Score=24.41 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=3.1
Q ss_pred HhcCCHHHH
Q 048269 119 AEVRELKKM 127 (465)
Q Consensus 119 ~~~~~~~~a 127 (465)
.+.|++++|
T Consensus 51 mNrG~Yq~A 59 (116)
T PF09477_consen 51 MNRGDYQEA 59 (116)
T ss_dssp HHTT-HHHH
T ss_pred HhhHHHHHH
Confidence 333333333
No 367
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=67.92 E-value=1.4e+02 Score=30.03 Aligned_cols=73 Identities=8% Similarity=0.015 Sum_probs=41.8
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 67 QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAEVRELKKMVNFFH 132 (465)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (465)
..|...+......++... .|++..+...++++... +.........++... ..|+...|+..++
T Consensus 206 kegi~i~~eAl~lIa~~a--~Gdlr~al~~Ldkli~~g~g~It~e~V~~llg~~~~~~if~L~~ai-~~gd~~~Al~~l~ 282 (598)
T PRK09111 206 KEGVEVEDEALALIARAA--EGSVRDGLSLLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEAL-MRGDVAAALAEFR 282 (598)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 345555555555555433 35666666666554322 122333333555533 4478888999998
Q ss_pred HhhhCCCCCC
Q 048269 133 IMNDCGCEYS 142 (465)
Q Consensus 133 ~~~~~~~~~~ 142 (465)
.+...|..|-
T Consensus 283 ~l~~~G~~p~ 292 (598)
T PRK09111 283 AQYDAGADPV 292 (598)
T ss_pred HHHHcCCCHH
Confidence 8888776554
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.90 E-value=1.2e+02 Score=29.22 Aligned_cols=383 Identities=10% Similarity=0.033 Sum_probs=194.5
Q ss_pred hhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHH
Q 048269 53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFF 131 (465)
Q Consensus 53 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~ 131 (465)
+.....+|..++.+-+| |+..|...+..+-+.+.+.+.-.+|..|....+.++..|-........-+ +++.|..+|
T Consensus 87 ~~rIv~lyr~at~rf~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 44566677776454444 99999999999999999999999999999998877777766655544444 499999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHH---HHc-C--------CCH-HHHHHHHHHhh--cCCCCCHHh--HHHH---HHHHHhcC
Q 048269 132 HIMNDCGCEYSLEMLNKVVKT---LCQ-R--------KLV-VEAKYLILKLS--EWIKPNEIA--YGWL---IKGYCDVG 191 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~---~~~-~--------~~~-~~a~~~~~~m~--~~~~~~~~~--~~~l---i~~~~~~g 191 (465)
..-.+.. +-++..|-...+. |.. . ++. ++-.++-..-. ....++... +..- .+..-...
T Consensus 164 lrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d 242 (568)
T KOG2396|consen 164 LRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFD 242 (568)
T ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHH
Confidence 8888754 3334444332221 110 0 000 00011100000 001111111 0000 00000001
Q ss_pred CHHHH-HHHHHHHHHCCCCCcHHHHHHHHH----HHHh---------------cCCHHHHHHHHHHHHHcCCCCCCcchH
Q 048269 192 DLIEA-SKIWNLMTDEGFEPSIDVVDKMIE----TFFK---------------INKDDEAMKVFQMMRVKRMDDLGLSTY 251 (465)
Q Consensus 192 ~~~~a-~~~~~~m~~~g~~~~~~~~~~li~----~~~~---------------~g~~~~A~~~~~~m~~~~~~~~~~~~~ 251 (465)
...+. ..+.+.+... .+-++.+|.-+.. .+.+ .-+.+...++|++..+. .| +...|
T Consensus 243 ~~kel~k~i~d~~~~~-~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~-t~sm~ 318 (568)
T KOG2396|consen 243 FLKELQKNIIDDLQSK-APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LP-TESMW 318 (568)
T ss_pred HHHHHHHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hh-HHHHH
Confidence 11111 1122333322 2223333322221 1111 11223345667666544 44 66677
Q ss_pred HHHHHHHHhcC------ChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHhcCCCHhhHHHHHH
Q 048269 252 RIVIDWMCKRG------KISQAYTMLEEMFKRG-IEA-DNLTLSSIIYGLLARGRLRE-AYKVVEEIEKPDISLYHGLIK 322 (465)
Q Consensus 252 ~~li~~~~~~~------~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~li~ 322 (465)
+..|..|...- .......+|+...+.+ ..+ ....|..+.-.+.......+ |..+..+....+...|-.-+.
T Consensus 319 e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~ 398 (568)
T KOG2396|consen 319 ECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQ 398 (568)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHH
Confidence 77777765433 3344455555554432 222 34456666555655554333 444443444444444444333
Q ss_pred HHHhc-CCHHHH-HHHHHHHHH--------------cCCCCCHHHHHHHHHHhhcccCCCCCCCchHHH-HHHHHHHHhc
Q 048269 323 GLLRL-RRAREA-TQVFREMIK--------------RGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD-TIFVGGLVKA 385 (465)
Q Consensus 323 ~~~~~-~~~~~a-~~~~~~m~~--------------~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~-~~li~~~~~~ 385 (465)
...+. .+++-- ..++..... .|-.|...+...++.++++. ..++..++ +.++.-+.+.
T Consensus 399 ~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~-----~~~~~~tl~s~~l~~~~e~ 473 (568)
T KOG2396|consen 399 VLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV-----IGADSVTLKSKYLDWAYES 473 (568)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh-----cCCceeehhHHHHHHHHHh
Confidence 33321 111111 111111111 12335555555555555433 33444444 5677778889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc--cchHHHHHHHHHHHHc-CCCCchhHHHHHHHH
Q 048269 386 GKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE--EGVVMFEEVGKKLREV-GLADLADIFQRYGKK 451 (465)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~-g~~~~~~~~~~~~~~ 451 (465)
|-..+|..++..+... -+|+...|..++.--... -+...+.++++.+... | .++.++-.|-..
T Consensus 474 ~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 474 GGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred cchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 9999999999999874 234566777777644332 2367778888877654 5 556666655543
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.90 E-value=1.1e+02 Score=28.64 Aligned_cols=92 Identities=12% Similarity=-0.019 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCc
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---------GFEPS 211 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~~ 211 (465)
..+.-+..-|..+|+++.|++.|.+.+ ...+.....|-.+|..-.-.|+|.....+..+..+. -+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 346677788888999999999998866 333445566777777777888888888877777654 12223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 212 IDVVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
...+..+...+.+ ++..|.+.|-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 3344444443333 66666655543
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.48 E-value=99 Score=28.16 Aligned_cols=119 Identities=6% Similarity=-0.094 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHH
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDLIEASKIW 200 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~ 200 (465)
.+.-+.++++..+.+ +.+......+|..+.+..+.++..+.++++....+-+...|...|...... -.++.+..+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345567777777763 466777777888888888888888888888844455777777777665542 3456666666
Q ss_pred HHHHHC------CC----CCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 201 NLMTDE------GF----EPS-------IDVVDKMIETFFKINKDDEAMKVFQMMRVKRM 243 (465)
Q Consensus 201 ~~m~~~------g~----~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 243 (465)
.+..+. |. .+. ..++.-+...+..+|..+.|..+++.+.+-++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 555431 11 000 11222223333455666666666666665544
No 371
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.78 E-value=17 Score=32.15 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=32.2
Q ss_pred CCchH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 048269 369 DPLVN-FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYN 411 (465)
Q Consensus 369 ~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 411 (465)
.|+.. .|+..|..-.+.||+++|+.++++..+.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34443 35788888899999999999999999988754444543
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.73 E-value=24 Score=34.30 Aligned_cols=103 Identities=8% Similarity=-0.082 Sum_probs=57.6
Q ss_pred HcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 154 CQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
-..|+...|...+.... ......-+....|.....+.|....|..++.+..... ...+-++..+.+++.-..+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 34566777776666654 1111112233344455555566666666666655543 233445566667777777777777
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHH
Q 048269 233 KVFQMMRVKRMDDLGLSTYRIVIDWMC 259 (465)
Q Consensus 233 ~~~~~m~~~~~~~~~~~~~~~li~~~~ 259 (465)
+.|++..+. .|.+...-+.|...-|
T Consensus 697 ~~~~~a~~~--~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKL--TTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhc--CCCChhhHHHHHHHHH
Confidence 777776654 4435555555555444
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.83 E-value=92 Score=27.19 Aligned_cols=241 Identities=14% Similarity=0.060 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHhh--cCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCcHHHHHHHHHHHHhcCC
Q 048269 157 KLVVEAKYLILKLS--EWIKP--NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE---GF--EPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 157 ~~~~~a~~~~~~m~--~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~~~~~~~~~li~~~~~~g~ 227 (465)
...++|+.-|++.. +|.+. .-.+...+|+.+.+.|++++....+.+|..- .+ .-+..+.|+++..-..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666655 32221 1233445566666677777666666665431 01 1234455666665555555
Q ss_pred HHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHH
Q 048269 228 DDEAMKVFQMMRVKRMDDLGL----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-----------ADNLTLSSIIYG 292 (465)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------~~~~~~~~li~~ 292 (465)
.+...++|+.-.+.--...+. .|-+.+...|...+++.+..++++++..+--. -=...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 555555544322210000011 23345566666667777777777766542100 012345555666
Q ss_pred HHhcCCHHHHHHHHHHhcC-----CCHhhHHHHHHH----HHhcCCHHHHHH-HHHHHH---HcCCCCCHHHH---HHHH
Q 048269 293 LLARGRLREAYKVVEEIEK-----PDISLYHGLIKG----LLRLRRAREATQ-VFREMI---KRGCEPTMHTY---IMLL 356 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~----~~~~~~~~~a~~-~~~~m~---~~~~~p~~~~~---~~ll 356 (465)
|....+-.....++++... |.+.....+-.+ ..+.|++++|-. .|+... +.| .|...|+ ..+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHH
Confidence 7766666666666666544 444444333221 345567776653 233222 334 3433332 2222
Q ss_pred HHhhcccC-------CCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 357 QGHLGKRG-------RKGP--DPLVNFDTIFVGGLVKAGKSLDAAKYVERVM 399 (465)
Q Consensus 357 ~~~~~~~~-------~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (465)
..+...+- .+.. .|.+...+.|+.+|.. +++.+-.++++.-.
T Consensus 280 NMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNR 330 (440)
T ss_pred HHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh
Confidence 22222111 2223 3444566788888754 55666666665543
No 374
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.78 E-value=77 Score=25.91 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=13.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhh
Q 048269 150 VKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~m~ 170 (465)
+-.|.+.|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 345666666666666666665
No 375
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=64.71 E-value=79 Score=26.04 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=86.5
Q ss_pred CCCCCHHhHHHHHHHHHhcC----ChhHHHHHHHHHhhCCC-CCh----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048269 69 CFAHNSITFNRMVDIIGKSR----NIDLFWETLQEMGRRRL-VND----KTFKIALMTLAEVRELKKMVNFFHIMNDCGC 139 (465)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 139 (465)
|..+++..++.++..+.+.. ..+-++.+=.+....++ .+. .....-+..|-+.||+.+.-.+|-.... |
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~-g- 80 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM-G- 80 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-h-
Confidence 56667777777776665543 33333333334433444 221 1222334455666666655555443332 1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHH-----HHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH
Q 048269 140 EYSLEMLNKVVKTLCQRKLVVE-----AKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV 214 (465)
Q Consensus 140 ~~~~~~~~~ll~~~~~~~~~~~-----a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 214 (465)
+-+.++++. |..+.++-+ .+ ..+.|..+..+-++.-..+++.+.|- ..+
T Consensus 81 -------------ce~~~dlq~~~~~va~~Ltkd~K--dk-~~vPFceFAetV~k~~q~~e~dK~~L----------GRi 134 (233)
T PF14669_consen 81 -------------CEKFADLQRFCACVAEALTKDSK--DK-PGVPFCEFAETVCKDPQNDEVDKTLL----------GRI 134 (233)
T ss_pred -------------cCCHHHHHHHHHHHHHHHHhccc--cc-CCCCHHHHHHHHhcCCccchhhhhhh----------hHH
Confidence 111111111 112222221 12 22345556666665544444333221 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDD-------------LGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
=-+++..|-+.-+|.+..++++.|.+..+.- ..-...|.....+.+.|..|.|..+++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 2355666777778888888888776542211 022345566666777777777777766
No 376
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.59 E-value=40 Score=27.86 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=16.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
.|++.+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555544443
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.27 E-value=30 Score=20.96 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=19.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269 188 CDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIE 220 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 220 (465)
.+.|-.+++..+++.|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666666655555543
No 378
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.83 E-value=77 Score=25.83 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhCCCCChHH---HHHHHHHHHhcCCHHH-------HHHHHHHhhhCCCCCC-HHHHHHHHHHHHcCC-
Q 048269 90 IDLFWETLQEMGRRRLVNDKT---FKIALMTLAEVRELKK-------MVNFFHIMNDCGCEYS-LEMLNKVVKTLCQRK- 157 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~- 157 (465)
++.|.+.++.-...++.+... |...+.-+++.....+ |+.-|++.... .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHh
Confidence 455566666655556655443 3334444444444333 44444444443 344 345555555554432
Q ss_pred ---CHHHHHHHH-------HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 158 ---LVVEAKYLI-------LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 158 ---~~~~a~~~~-------~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
+..+|..+| ++.. ...|+..+|+.-+.... +|-++..++.+.+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv-~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAV-DEDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHH-HH-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 233333333 3332 13566666666555542 3444455554443
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.68 E-value=48 Score=25.06 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 268 YTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
.+-++.+....+.|++.....-++++.+.+++..|.++|+.++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444455556666666666666666666666666665544
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.46 E-value=69 Score=31.38 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Q 048269 92 LFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE 171 (465)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 171 (465)
-+-.++-.|.....|-+...|...-.....|+...|...+.........-..+....|...+.+.|....|..++.+...
T Consensus 591 ~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~ 670 (886)
T KOG4507|consen 591 IGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA 670 (886)
T ss_pred HHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 34445555544444444444443333344566666666665554432122222233445555555666666666665542
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 172 WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
-....+.++-.+.++|....+++.|++.|++..+.
T Consensus 671 ~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 671 INSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred hcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 12334455666666666667777777777666654
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.38 E-value=47 Score=23.59 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=11.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048269 219 IETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~ 240 (465)
.......|++++|.+.+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344455666666665555443
No 382
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.85 E-value=88 Score=25.91 Aligned_cols=167 Identities=11% Similarity=-0.030 Sum_probs=99.0
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL 105 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 105 (465)
+....++.|..+-...+..+..-+.-++-...+.= ..+--...|..++...... .. +.....+.+...+.
T Consensus 14 ik~wwkeNGk~li~gviLg~~~lfGW~ywq~~q~~--------q~~~AS~~Y~~~i~~~~ak-~~-~~~~~~ekf~~~n~ 83 (207)
T COG2976 14 IKDWWKENGKALIVGVILGLGGLFGWRYWQSHQVE--------QAQEASAQYQNAIKAVQAK-KP-KSIAAAEKFVQANG 83 (207)
T ss_pred HHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhcC-Cc-hhHHHHHHHHhhcc
Confidence 56666666766555555555433322221211111 1112455677777776533 33 56666677766654
Q ss_pred CCh-HHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-----HHHHHHcCCCHHHHHHHHHHhh-cCCCCC
Q 048269 106 VND-KTFK--IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK-----VVKTLCQRKLVVEAKYLILKLS-EWIKPN 176 (465)
Q Consensus 106 ~~~-~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~m~-~~~~~~ 176 (465)
-+. .++. .+...+...+++++|+.-++..... |....+.. |.+.....|.+++|...++... .+. .
T Consensus 84 ~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~ 158 (207)
T COG2976 84 KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--A 158 (207)
T ss_pred ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--H
Confidence 332 2222 3456678889999999999887753 33333333 4456777888899988888776 211 2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
......-.+.+...|+-++|..-|....+.+
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 2223344567788888888888888888775
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.23 E-value=28 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 048269 217 KMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m 238 (465)
.+|.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444444444443
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=1e+02 Score=26.48 Aligned_cols=81 Identities=9% Similarity=-0.087 Sum_probs=37.5
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHcCCCHHHHHHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM-LNKVVKTLCQRKLVVEAKYL 165 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~ 165 (465)
..+++.|+..+.+....++....-|..-+.++.+..+++.+..--...++. .||..- .-.+...+.....+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555555555555555433344444455555555555554444443332 233322 22233334444555555555
Q ss_pred HHHh
Q 048269 166 ILKL 169 (465)
Q Consensus 166 ~~~m 169 (465)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 5554
No 385
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.88 E-value=46 Score=33.17 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048269 326 RLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358 (465)
Q Consensus 326 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 358 (465)
+.+++.+|.+.+-.+...++.|...-...+..+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 347777888887777777777776655555444
No 386
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.86 E-value=52 Score=23.00 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=16.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048269 260 KRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300 (465)
Q Consensus 260 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 300 (465)
..|+.+.|.+++..+. .| +..|..++.++...|.-.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555555554 32 233444455554444433
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.56 E-value=1.5e+02 Score=28.12 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVE--VPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRY 448 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~ 448 (465)
-...|+.-|...|+..+|.+.++++ |++ -...++.+++.+..+.|+-+..+.+++.....|.+-.-.+-..|
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf 584 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhh
Confidence 3467888999999999999998887 332 23458899999999999988888899888888754443333333
No 388
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.34 E-value=13 Score=24.28 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=35.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
.|....++.++...++..-.++++..+.++.+.|..+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777766777666666653
No 389
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.25 E-value=1.4e+02 Score=30.01 Aligned_cols=84 Identities=8% Similarity=-0.036 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHh
Q 048269 55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAE 120 (465)
Q Consensus 55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~ 120 (465)
.....+... ..+.|+..+......++.. ..|++..++.++++.... |..+......++.++..
T Consensus 187 ei~~~L~~i-~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 187 TVLEHLTQV-LAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 334444443 3444666666666655552 346666666666544322 22344455566666555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC
Q 048269 121 VRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
|+...++.+++++.+.|..+.
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHH
Confidence 788899999999988876544
No 390
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.84 E-value=56 Score=29.56 Aligned_cols=81 Identities=7% Similarity=-0.139 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI 194 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 194 (465)
...|.+.|.+++|+++|....... +-|.+++..-..+|.+...+..|+.=.+.... . -...+.+|.+.+.-.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---L----d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---L----DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---h----hHHHHHHHHHHHHHH
Confidence 345778899999999998777643 33778887777888888888777665555441 1 122345555554444
Q ss_pred HHHHHHHHH
Q 048269 195 EASKIWNLM 203 (465)
Q Consensus 195 ~a~~~~~~m 203 (465)
.++....+.
T Consensus 176 ~~Lg~~~EA 184 (536)
T KOG4648|consen 176 ESLGNNMEA 184 (536)
T ss_pred HHHhhHHHH
Confidence 444444333
No 391
>PLN03025 replication factor C subunit; Provisional
Probab=60.79 E-value=1.3e+02 Score=27.30 Aligned_cols=88 Identities=6% Similarity=-0.060 Sum_probs=51.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhh-------------CCCCChHHHHHHHHHHHh
Q 048269 54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGR-------------RRLVNDKTFKIALMTLAE 120 (465)
Q Consensus 54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~ 120 (465)
+.....+... ..+.|+..+......++... .|+...++..++.... .+.+.......++..+.
T Consensus 161 ~~l~~~L~~i-~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~- 236 (319)
T PLN03025 161 QEILGRLMKV-VEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCL- 236 (319)
T ss_pred HHHHHHHHHH-HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHH-
Confidence 3444444443 34456666666666665543 4666666666653221 12234445555555544
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHH
Q 048269 121 VRELKKMVNFFHIMNDCGCEYSLEM 145 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~ 145 (465)
.+++++|...+.++...|..|....
T Consensus 237 ~~~~~~a~~~l~~ll~~g~~~~~Il 261 (319)
T PLN03025 237 KGKFDDACDGLKQLYDLGYSPTDII 261 (319)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 4789999999999988887765443
No 392
>PRK09687 putative lyase; Provisional
Probab=60.68 E-value=1.2e+02 Score=26.91 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 048269 282 DNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGH 359 (465)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 359 (465)
+..+-...+.++.+.|+..-.-.+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 44445555555555555332222333322233 223455566666664 466666666542 34555544444444
No 393
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.50 E-value=1.6e+02 Score=28.97 Aligned_cols=87 Identities=8% Similarity=0.038 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHH
Q 048269 54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLA 119 (465)
Q Consensus 54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~ 119 (465)
+.......+. ..+.|+..+......++... .|+...|+.+++++... |.++......++.++.
T Consensus 181 ~~i~~~l~~i-l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~ 257 (509)
T PRK14958 181 LQIAAHCQHL-LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA 257 (509)
T ss_pred HHHHHHHHHH-HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3333444443 34446666666666555443 47777777777665432 2234455666666655
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHH
Q 048269 120 EVRELKKMVNFFHIMNDCGCEYSLE 144 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~ 144 (465)
. ++.+.++.+++.+...|..|...
T Consensus 258 ~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 258 A-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 5 89999999999999999776543
No 394
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=60.47 E-value=1.3e+02 Score=31.05 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 048269 105 LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
..+...+..++..+.. ++..+++.+++++...|+...
T Consensus 243 ~~d~~~i~~ll~aL~~-~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 243 ALDQTYMVRLLDALAA-GDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred CCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 3444455555554443 778888888888877765443
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.33 E-value=56 Score=22.86 Aligned_cols=66 Identities=5% Similarity=0.058 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. . .+..|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-----g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-----KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-----CCcHHHHHHHHHHHcCchhhhh
Confidence 45677777777743 44444444443345688888999998887 5 4457888888888888765554
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.24 E-value=28 Score=25.65 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 315 SLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
.-|..++..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999999876
No 397
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=59.98 E-value=1.4e+02 Score=30.42 Aligned_cols=87 Identities=8% Similarity=0.018 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMT 117 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~ 117 (465)
..+.....+.+. ....|+..+......+++.. .|++..++.+++++... |..+......++.+
T Consensus 179 s~eeI~~~L~~I-l~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldA 255 (709)
T PRK08691 179 TAQQVADHLAHV-LDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTG 255 (709)
T ss_pred CHHHHHHHHHHH-HHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHH
Confidence 344455555554 44556666777666666554 47777777777665432 12233445566666
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCC
Q 048269 118 LAEVRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
+.. ++...++.+++.+...|+.+.
T Consensus 256 L~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 256 IIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 555 889999999999999886554
No 398
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.82 E-value=3.5e+02 Score=31.92 Aligned_cols=64 Identities=6% Similarity=-0.243 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269 372 VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438 (465)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 438 (465)
..+|-...+...+.|+++.|...+-...+.+ .| ..+--...-....|+...|..++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 3567777777777888888887766666544 22 3444455667778888888888888887653
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.71 E-value=26 Score=22.63 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 318 HGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 318 ~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666666666666666666654
No 400
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.56 E-value=40 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFL 414 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (465)
+.-++.+.|++++|.+..+.+.+ +.|+-.-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 44567899999999999999987 577665444443
No 401
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.92 E-value=1.6e+02 Score=27.78 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=32.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHH--hHHHHHHHHHhcCCH
Q 048269 118 LAEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEI--AYGWLIKGYCDVGDL 193 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~li~~~~~~g~~ 193 (465)
.++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+-+.-+++ .|..|+.. ...+-+...+..|+.
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~---~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK---HGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh---CCCCccccCCCcccHHHHHHHCCCH
Confidence 3444555443 33334555554432 2334445555666554433332 22222211 112234445556666
Q ss_pred HHHHHHH
Q 048269 194 IEASKIW 200 (465)
Q Consensus 194 ~~a~~~~ 200 (465)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5544333
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.68 E-value=1.2e+02 Score=26.06 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269 209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWM 258 (465)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 258 (465)
.|.+.....++..|. .+++++|.+++.++.+.|..|. ...+.+.+.+
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~--Dii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE--DIITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH--HHHHHHHHHH
Confidence 355555555555443 4566777777777776666652 2344444444
No 403
>PRK10941 hypothetical protein; Provisional
Probab=58.32 E-value=1.3e+02 Score=26.52 Aligned_cols=78 Identities=8% Similarity=-0.150 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCCHHhHHHHHHHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~~~~~~~li~~~ 187 (465)
..+.+-.+|.+.++++.|+.+.+.+.... +.++.-+.--.-.|.+.|.+..|..=++... .-..|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 35666778888999999999999888865 5556666666677888899988888887776 22345555555555544
Q ss_pred H
Q 048269 188 C 188 (465)
Q Consensus 188 ~ 188 (465)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=58.23 E-value=61 Score=28.15 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269 217 KMIETFFKINKDDEAMKVFQMMRV----KRMDDLGLSTYRIVIDWMCKRGKISQAYTM 270 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 270 (465)
.+...|.+.|++++|.++|+.+.. .|.......+...+..++.+.|+.+....+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 444555555555555555555421 121111233334444444445554444443
No 405
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.78 E-value=1.7e+02 Score=27.65 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=9.1
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 048269 150 VKTLCQRKLVVEAKYLIL 167 (465)
Q Consensus 150 l~~~~~~~~~~~a~~~~~ 167 (465)
+...+..|+.+.+..+++
T Consensus 72 L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 344445566555554444
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.49 E-value=86 Score=23.82 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 193 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
++.+.+.|..-..- .-|......-+...-... .+.++|..|..+|+-......|......+...|++++|.++|+
T Consensus 49 Ler~~~~f~~~~~Y--~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDERY--KNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGGG--TT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHhh--cCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHH
Q 048269 273 EMF 275 (465)
Q Consensus 273 ~m~ 275 (465)
.-+
T Consensus 124 ~Gi 126 (126)
T PF08311_consen 124 LGI 126 (126)
T ss_dssp HHH
T ss_pred hhC
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.98 E-value=1.5e+02 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 048269 216 DKMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m 238 (465)
..++..+.+.|++.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34666667777777776655443
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.90 E-value=27 Score=18.14 Aligned_cols=24 Identities=4% Similarity=-0.057 Sum_probs=10.7
Q ss_pred ChhHHHHHHHHHhhCCCCChHHHH
Q 048269 89 NIDLFWETLQEMGRRRLVNDKTFK 112 (465)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~ 112 (465)
+++.+..+|+++....+.+...|.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHH
Confidence 344455555555444333333333
No 409
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=55.79 E-value=1.2e+02 Score=25.11 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcC------------------CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 288 SIIYGLLARGRLREAYKVVEEIEK------------------PDISLYHGLIKGLLRLRRAREATQVFRE 339 (465)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (465)
+++..|.+..++.+..++++.+.+ +.-..-|.....+.+.|..|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344455555555555555555543 2233456667778888888888888774
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.42 E-value=81 Score=23.20 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
-|..|+..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999999887
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.04 E-value=73 Score=22.56 Aligned_cols=52 Identities=4% Similarity=-0.121 Sum_probs=26.7
Q ss_pred HhcCChhHHHHHHHHHhh----CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 85 GKSRNIDLFWETLQEMGR----RRLVN-----DKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
.+.|++..|.+.+.+... .+... ..+.-.+...+...|++++|+..+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777555544432 22222 11222334455566777777776666554
No 412
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=54.87 E-value=1.9e+02 Score=28.34 Aligned_cols=87 Identities=10% Similarity=0.167 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----------------CCCChHHHHHHH
Q 048269 53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR-----------------RLVNDKTFKIAL 115 (465)
Q Consensus 53 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------------~~~~~~~~~~l~ 115 (465)
.+.....+... ..+.|+..+......++.. ..|++..|+..++++... |..+......++
T Consensus 189 ~~el~~~L~~i-~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 189 FEEIFKLLEYI-TKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred HHHHHHHHHHH-HHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Confidence 34444455544 3444666666666655553 346777777777665321 223444555666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 048269 116 MTLAEVRELKKMVNFFHIMNDCGCEYSL 143 (465)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (465)
.+..+ |+.+.|+.+++++...|..|..
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 65554 8999999999999999876554
No 413
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.62 E-value=33 Score=30.43 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHH
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVD 216 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 216 (465)
-|+..|....+.||+++|++++++..+.|+.--..+|-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35577777777777777777777777777654444443
No 414
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.61 E-value=66 Score=25.19 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 97 LQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
.+.+.+.|.--..--..++..+.+.++.-.|.++|+.+.+.+...+..|....++.+...|
T Consensus 9 ~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444455552222345566666666666777777777777665555555444555555555
No 415
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.35 E-value=2.5e+02 Score=28.47 Aligned_cols=45 Identities=2% Similarity=-0.050 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
.-.+|-.|.|+|++++|.++....... .......+-..+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 445667788888888888888555542 344445566677777664
No 416
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.66 E-value=2.1e+02 Score=27.53 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=72.6
Q ss_pred HHHhcCCHHHHHHHHHHhcC---C---------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCHHHH
Q 048269 292 GLLARGRLREAYKVVEEIEK---P---------DISLYHGLIKGLLRLRRAREATQVFREMIK-------RGCEPTMHTY 352 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~---~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~ 352 (465)
.+.-.|++.+|.+++...-- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|....-
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 35567888998888865433 1 222356666666677777777777777663 3444321100
Q ss_pred HHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc
Q 048269 353 IMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE 420 (465)
Q Consensus 353 ~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (465)
+.. -+.-..+|| ..-.|...|++-.|.+.|.+.... +.-++..|..|..+|...
T Consensus 329 --ls~----------nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 --LSQ----------NKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred --hhc----------ccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 000 000012333 244567899999999999998874 567889999999999764
No 417
>PHA03100 ankyrin repeat protein; Provisional
Probab=53.14 E-value=2.2e+02 Score=27.54 Aligned_cols=246 Identities=11% Similarity=0.053 Sum_probs=107.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCh--HHHHHHHHH-----HHhcCCHHHHHHHHHHhhhCCCCCCHHHH--HH
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRRL-VND--KTFKIALMT-----LAEVRELKKMVNFFHIMNDCGCEYSLEML--NK 148 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 148 (465)
..+....+.|+.+-+..++ +.|. ++. ......+.. .+..+..+ +.+.+.+.|..++.... .+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 4455556667765444444 4444 221 112223333 34444443 33444455544332211 22
Q ss_pred HHHHHH--cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH--HHHHHHHHh
Q 048269 149 VVKTLC--QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFK 224 (465)
Q Consensus 149 ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~ 224 (465)
.+...+ ..|+.+-+..+++.-..-...+.... +.+..++..|. .-.++++.+.+.|..++.... ...+..++.
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 333444 66666655555543211111122222 34455555662 123455566677766654322 234555566
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCcch--------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHH
Q 048269 225 INKDDEAMKVFQMMRVKRMDDLGLST--------YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN---LTLSSIIYGL 293 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~ 293 (465)
.|+.+-+. .+.+.|..+ +... +...+...+..|+ ...++.+.+.+.|..++. .-.+. +...
T Consensus 186 ~~~~~iv~----~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~Tp-L~~A 257 (480)
T PHA03100 186 KGNIDVIK----FLLDNGADI-NAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTP-LHYA 257 (480)
T ss_pred hCCHHHHH----HHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCH-HHHH
Confidence 67655444 344456555 3221 0333444445555 112334444455544332 12222 3334
Q ss_pred HhcCCHHHHHHHHHHhcCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269 294 LARGRLREAYKVVEEIEKPD---ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 348 (465)
+..|+.+-+..+++.-..++ ..-.+.+-. .+..++. ++++.+.+.|...+
T Consensus 258 ~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~-A~~~~~~----~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 258 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHI-AILNNNK----EIFKLLLNNGPSIK 310 (480)
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH-HHHhCCH----HHHHHHHhcCCCHH
Confidence 55667666665555443322 222223322 2334443 35555666665444
No 418
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.06 E-value=1.2e+02 Score=30.41 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHhhcCCCCCHHhHHHH
Q 048269 112 KIALMTLAEVRELKKMVNFFHIMNDC--GCEYSLEMLNKVVKTLCQRKLVV------EAKYLILKLSEWIKPNEIAYGWL 183 (465)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~------~a~~~~~~m~~~~~~~~~~~~~l 183 (465)
.+++.+|...|++..+.++++..... |-+.=...||..++-..+.|.++ .|.+++++.. +.-|..||..|
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all 109 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHH
Confidence 37889999999999999999888763 22334566888888888888754 3444444433 56678888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048269 184 IKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 184 i~~~~~~g~~~~a~~~~~~m~~ 205 (465)
+.+....-+-....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776654444444445555443
No 419
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.79 E-value=2.9e+02 Score=28.84 Aligned_cols=223 Identities=14% Similarity=0.028 Sum_probs=116.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHH-HHHHcCCCHHHHHHHHHHhh-----cCCCCCHHhHHHH
Q 048269 117 TLAEVRELKKMVNFFHIMNDCGCEYSLE-------MLNKVV-KTLCQRKLVVEAKYLILKLS-----EWIKPNEIAYGWL 183 (465)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll-~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~~l 183 (465)
......++.+|..+..++...-..|+.. .++.+- ......|++++|.++.+... ....+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456688889988888776643232221 233322 22345688888888877765 2234456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH---HHH--HHHHHhcCCHH--HHHHHHHHHHHcCC--CCC---CcchH
Q 048269 184 IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV---DKM--IETFFKINKDD--EAMKVFQMMRVKRM--DDL---GLSTY 251 (465)
Q Consensus 184 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~---~~l--i~~~~~~g~~~--~A~~~~~~m~~~~~--~~~---~~~~~ 251 (465)
..+..-.|++++|..+.....+..-.-+...+ ..+ ...+...|+.. +....|......-. .|. -.-++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 78888889999998888776653222233322 222 23345566433 33333333332211 110 12344
Q ss_pred HHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhcC----CC-HhhHHHH---
Q 048269 252 RIVIDWMCKRG-KISQAYTMLEEMFKRGIEADNLTL--SSIIYGLLARGRLREAYKVVEEIEK----PD-ISLYHGL--- 320 (465)
Q Consensus 252 ~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~l--- 320 (465)
..++.++.+.. ...++..-++.-......|-...+ ..|+..+...|+.++|...++++.. ++ ..-|.+.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 44555555411 112222222222222222222222 2667778888999999988888876 21 1112222
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 048269 321 IKG--LLRLRRAREATQVFRE 339 (465)
Q Consensus 321 i~~--~~~~~~~~~a~~~~~~ 339 (465)
+.. -...|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 2345777777666655
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.14 E-value=16 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIET 221 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 221 (465)
..|.-..|..+|..|.++|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346667788888888888877764 6666654
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=2.1e+02 Score=26.83 Aligned_cols=118 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCcchHH--------HHHHHHHhcCChHHHHHHHHHHHHC-CCCCC----HHHHHHHHH
Q 048269 225 INKDDEAMKVFQMMRVKRMDDLGLSTYR--------IVIDWMCKRGKISQAYTMLEEMFKR-GIEAD----NLTLSSIIY 291 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~--------~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~----~~~~~~li~ 291 (465)
..++++|.++-+.....-..- +..++. -+-.+|-..|+.......+...... ....| ....|.|++
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 355666666555543321111 333322 2333445566666666666554432 12222 334577777
Q ss_pred HHHhcCCHHHHHHHHHHhcCCCHhhHHH-------HHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 292 GLLARGRLREAYKVVEEIEKPDISLYHG-------LIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
.|...+.++.|..+..+..-|...+-+- +....+-.+++..|.+.|-.....
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 8888888888888887776544333221 122233457788888887777654
No 422
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.10 E-value=3.5e+02 Score=29.15 Aligned_cols=198 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh----cCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCcHHHHHHHH---
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLS----EWIKPNEIAYGWLIKGYCDV-GDLIEASKIWNLMTDEGFEPSIDVVDKMI--- 219 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li--- 219 (465)
..++.+...+++.+|..+.++-+ --...|+..|-.=+..+.+. ++.+-.--++..+.+. ..+...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~E--Dvt~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNE--DVTKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccc--cccccccccccccc
Q ss_pred ---------HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269 220 ---------ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG--KISQAYTMLEEMFKRGIEADNLTLSS 288 (465)
Q Consensus 220 ---------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (465)
......++.....+.+...... ..........++.+|++.+ +++.|+....++++.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----------- 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----------- 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC--CCHhhHHHHHHHH----------HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048269 289 IIYGLLARGRLREAYKVVEEIEK--PDISLYHGLIKGL----------LRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~----------~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 356 (465)
+...|.+.++.+.- .--..|+.-+..| ..+.|+.+=+-.++++. .++|+..-|.+=
T Consensus 844 ---------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~--~l~~~~rry~ID- 911 (928)
T PF04762_consen 844 ---------DPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQ--KLPPLYRRYKID- 911 (928)
T ss_pred ---------ChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHH--hCChhheeeeHh-
Q ss_pred HHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 357 QGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERV 398 (465)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (465)
...|++++|++-+.++
T Consensus 912 --------------------------~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 912 --------------------------DHLKRYEKALRHLSAC 927 (928)
T ss_pred --------------------------hhhCCHHHHHHHHHhh
No 423
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.06 E-value=4.9e+02 Score=30.90 Aligned_cols=151 Identities=7% Similarity=-0.040 Sum_probs=96.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRRLV---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
.+..+-.+++.+..|...++.-...... ....+..+...|+..++++....+...-.. .|+ .+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 4455667788888998888884211111 223344455588889999888887764221 233 222 3344566
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH-HHHHHHHHhcCCHHHHHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV-DKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~ 234 (465)
.|++..|...|+.+....++...+++-+++.....|.++.++-..+....+- .+....+ +.=+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8999999999999985556667788888888788888888877666655441 2222222 3334444667777777766
Q ss_pred HH
Q 048269 235 FQ 236 (465)
Q Consensus 235 ~~ 236 (465)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 55
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.85 E-value=80 Score=27.44 Aligned_cols=19 Identities=0% Similarity=-0.235 Sum_probs=10.4
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 048269 81 VDIIGKSRNIDLFWETLQE 99 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~ 99 (465)
++.|...|++.+|++-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 4555555555555555543
No 425
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.64 E-value=66 Score=23.68 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALM 116 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 116 (465)
+++.+.++...++|+++++.|.+.|-.+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4556677777888888888888887766554444433
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.50 E-value=70 Score=20.97 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269 370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421 (465)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (465)
|....++.++..+++..-.++++..+.++...|. .+..+|..-++.+++..
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 4445566666666777777777777777777664 44555555555555443
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.49 E-value=19 Score=27.50 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCH
Q 048269 262 GKISQAYTMLEEMFKRGIEADN 283 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~ 283 (465)
|.-.+|..+|++|.+.|-+||.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc
Confidence 3334455555555555555543
No 428
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=50.18 E-value=2.5e+02 Score=27.22 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhcC---CCHhhHHHHHHHHH
Q 048269 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA--RGRLREAYKVVEEIEK---PDISLYHGLIKGLL 325 (465)
Q Consensus 251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 325 (465)
-+.++.-+...|-..+|..++..+... .+|+...|.-+|..-.. .-+...+..+++.+.. .|+..|-..+.-=.
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 345556666666666666666666554 34455555555543211 1225555666666554 56666665555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 048269 326 RLRRAREATQVFREMI 341 (465)
Q Consensus 326 ~~~~~~~a~~~~~~m~ 341 (465)
..|..+.+-.++.+..
T Consensus 542 ~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAM 557 (568)
T ss_pred cCCCcccccHHHHHHH
Confidence 6666666666555444
No 429
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.08 E-value=1.6e+02 Score=25.05 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC----CChHHH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 048269 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL----VNDKTF--KIALMTLAEVRELKKMVNFFHIMNDCGCEYSL 143 (465)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (465)
+.+...-+|.|+--|.-...+.+|.+.|.. ..++ .+..++ ..-|+...+.|+.++|++..+.+...-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344455555554444444344444444432 2222 112222 23455556666666666666655433223333
Q ss_pred HHHHHHHH----HHHcCCCHHHHHHHHHH
Q 048269 144 EMLNKVVK----TLCQRKLVVEAKYLILK 168 (465)
Q Consensus 144 ~~~~~ll~----~~~~~~~~~~a~~~~~~ 168 (465)
..+-.|.. =+.+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222211 12344555555555544
No 430
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.02 E-value=2.3e+02 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 048269 226 NKDDEAMKVFQMMRVKRMDD 245 (465)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~ 245 (465)
++.+.|+..+..|.+.|..|
T Consensus 244 sd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34444444444444444443
No 431
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=49.78 E-value=2e+02 Score=26.00 Aligned_cols=86 Identities=9% Similarity=-0.004 Sum_probs=48.8
Q ss_pred hcCCHHHHHHHHHHhhhCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269 120 EVRELKKMVNFFHIMNDCGC----EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (465)
..+-.+.|.+.|+.....+. ..++.....++....+.|..+.-..+++.... ..+......++.+.+-..+.+.
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~--~~~~~~k~~~l~aLa~~~d~~~ 219 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN--STSPEEKRRLLSALACSPDPEL 219 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT--TSTHHHHHHHHHHHTT-S-HHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc--cCCHHHHHHHHHhhhccCCHHH
Confidence 33445666777776665321 33455555666666667766555555555542 2356666777777777777777
Q ss_pred HHHHHHHHHHCC
Q 048269 196 ASKIWNLMTDEG 207 (465)
Q Consensus 196 a~~~~~~m~~~g 207 (465)
..++++.....+
T Consensus 220 ~~~~l~~~l~~~ 231 (324)
T PF11838_consen 220 LKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHCTS
T ss_pred HHHHHHHHcCCc
Confidence 777777777654
No 432
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=49.77 E-value=1e+02 Score=22.65 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc--cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE--EGVVMFEEVGKKLREVGLADLADIFQRYGKKMA 453 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~ 453 (465)
..++.-|...|++++|.+-+.++.... -.......++..+... ..-+.+..++..+.+.+......+...+.++..
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~ 83 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLE 83 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 345667789999999999999885321 1223455555555544 356777888888888887766666666665443
No 433
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.40 E-value=3.1e+02 Score=28.04 Aligned_cols=232 Identities=9% Similarity=-0.002 Sum_probs=113.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
+.+...-.....+....|+.++|......+...|...+..+..++..+.+.|.+.... ++.+|...=...+...-..+.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 3466666778888888888888888888887777766777888888777666544322 222222110011222222222
Q ss_pred HHHHcC------------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHCC-CCCcH--H
Q 048269 151 KTLCQR------------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC--DVGDLIEASKIWNLMTDEG-FEPSI--D 213 (465)
Q Consensus 151 ~~~~~~------------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g-~~~~~--~ 213 (465)
..+... .+...+..++. .++++...-..++-++. ...+.+.|..++....... +.+.. .
T Consensus 205 ~~l~~~~~~~a~a~~al~~~p~~~~~~~~----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~ 280 (644)
T PRK11619 205 KQLPADYQTIASALIKLQNDPNTVETFAR----TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQE 280 (644)
T ss_pred HhcChhHHHHHHHHHHHHHCHHHHHHHhh----ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 221000 01111111111 11222211111111221 2345677777777764332 22221 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048269 214 VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGL 293 (465)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 293 (465)
++..+.......+..++|.+.++...... . +......-+..-.+.++++.+...+..|....- -...-.--+.+++
T Consensus 281 ~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~ 356 (644)
T PRK11619 281 LRDIVAWRLMGNDVTDEQAKWRDDVIMRS--Q-STSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLL 356 (644)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHhccccc--C-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHH
Confidence 23333333333322445555555433221 1 334444445555577777777777776644322 2333344556666
Q ss_pred HhcCCHHHHHHHHHHhcC
Q 048269 294 LARGRLREAYKVVEEIEK 311 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~~~~ 311 (465)
...|+.++|...|+.+..
T Consensus 357 ~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 357 LEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHcCCHHHHHHHHHHHhc
Confidence 667777777777776644
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.27 E-value=1.7e+02 Score=25.19 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 048269 383 VKAGKSLDAAKYVERV 398 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m 398 (465)
.....+++|+..+.+.
T Consensus 89 l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRA 104 (284)
T ss_pred HhhccccHHHHHHHHH
Confidence 3334444444444444
No 435
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.70 E-value=3.1e+02 Score=27.96 Aligned_cols=70 Identities=9% Similarity=0.011 Sum_probs=39.7
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 68 PCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAEVRELKKMVNFFHI 133 (465)
Q Consensus 68 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (465)
.|+..+......++.. ..|++..|+.++++.... |..+...+..++..+. .++...++.+.+.
T Consensus 199 Egi~~d~eAL~~IA~~--A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~-~~d~~~~l~l~~~ 275 (700)
T PRK12323 199 EGIAHEVNALRLLAQA--AQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALA-AEDGAALLAIADE 275 (700)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 3555555544433322 456666666666543221 2223445556666555 5788888888888
Q ss_pred hhhCCCC
Q 048269 134 MNDCGCE 140 (465)
Q Consensus 134 ~~~~~~~ 140 (465)
+.+.|..
T Consensus 276 l~~~G~d 282 (700)
T PRK12323 276 MAGRSLS 282 (700)
T ss_pred HHHcCCC
Confidence 8777754
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.66 E-value=1.1e+02 Score=22.55 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 048269 121 VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIW 200 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 200 (465)
....++|..+.+.+...+. ....+--.-+..+.+.|++++| +..-.....||...|.+|-. .+.|-.+.+...+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 3456777777777777552 2222222334456677888888 22222334677777766543 4667777777777
Q ss_pred HHHHHCCCCCcHHHH
Q 048269 201 NLMTDEGFEPSIDVV 215 (465)
Q Consensus 201 ~~m~~~g~~~~~~~~ 215 (465)
.++..+| .|....|
T Consensus 93 ~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 93 TRLASSG-SPELQAF 106 (116)
T ss_dssp HHHCT-S-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 7776655 3444333
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.56 E-value=45 Score=18.21 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 048269 387 KSLDAAKYVERVMNRGVEVPRFDYNKF 413 (465)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (465)
.++.|..+|++... +.|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 46778888888776 45777766543
No 438
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.94 E-value=1.2e+02 Score=23.03 Aligned_cols=74 Identities=8% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-
Q 048269 330 AREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF- 408 (465)
Q Consensus 330 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 408 (465)
++++.+.|.... ..+-|..-...-+.-. +..++..++|..|...|+.-...
T Consensus 49 Lerc~~~f~~~~--~YknD~RyLkiWi~ya--------------------------~~~~dp~~if~~L~~~~IG~~~Al 100 (125)
T smart00777 49 LERCIRYFEDDE--RYKNDPRYLKIWLKYA--------------------------DNCDEPRELFQFLYSKGIGTKLAL 100 (125)
T ss_pred HHHHHHHhhhhh--hhcCCHHHHHHHHHHH--------------------------HhcCCHHHHHHHHHHCCcchhhHH
Q ss_pred hHHHHHHHHhhccchHHHHHHHH
Q 048269 409 DYNKFLHYYSNEEGVVMFEEVGK 431 (465)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~ 431 (465)
.|......+...|++.+|.++++
T Consensus 101 fYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 101 FYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
No 439
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.70 E-value=2.9e+02 Score=27.21 Aligned_cols=87 Identities=5% Similarity=-0.098 Sum_probs=53.1
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-------------CCChHHHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR-------------LVNDKTFKIALMTL 118 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~~~~l~~~~ 118 (465)
+.+.....+... ....|+..+......++... .|++..+...++.+...+ .+.......++.++
T Consensus 176 s~~el~~~L~~i-~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al 252 (504)
T PRK14963 176 TEEEIAGKLRRL-LEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL 252 (504)
T ss_pred CHHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 334444444443 33446666666666555444 467777766666644332 12333456666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCC
Q 048269 119 AEVRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
..++..+|+.+++++...|..|.
T Consensus 253 -~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 253 -AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCHH
Confidence 55899999999999999885554
No 440
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=47.27 E-value=30 Score=20.71 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=29.5
Q ss_pred HHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 048269 61 QYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMG 101 (465)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 101 (465)
+++ ..+..++-....+..+.+.+...+....++.+|+++.
T Consensus 3 ~~i-~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 3 NDI-FQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHH-HTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhh-hhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 454 6777888888888888888888888777777777764
No 441
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=46.62 E-value=3.2e+02 Score=27.81 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDCGC 139 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 139 (465)
...++.++.+ ++...++.++..+.+.|.
T Consensus 249 ~~~ll~al~~-~d~~~~l~~~~~l~~~g~ 276 (647)
T PRK07994 249 ALSLLEALVE-GDGERVMALINQLAERGP 276 (647)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCC
Confidence 3344444433 556666666666665553
No 442
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=46.60 E-value=1.7e+02 Score=24.25 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=9.7
Q ss_pred hcCCHHHHHHHHHHHH
Q 048269 224 KINKDDEAMKVFQMMR 239 (465)
Q Consensus 224 ~~g~~~~A~~~~~~m~ 239 (465)
+.|+++.|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4466666666666554
No 443
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.24 E-value=84 Score=21.49 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDK 109 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 109 (465)
+++.+.++.--++|+++++.|.++|-.++.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 455666677777788888877777776554
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.90 E-value=2.3e+02 Score=25.68 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC--------CCHhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEK--------PDISLYHGL-IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLL 356 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 356 (465)
+......|++.|+.+.|.+.+....+ -|+..+.+= .-.|..+.-..+-++..+.+.+.|-..+...---..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 34445566666776666666665443 222222221 112333344555556666666666555443333233
Q ss_pred HHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269 357 QGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421 (465)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (465)
++. .+....++.+|..+|-+....--.-...+|..++..-.-.|
T Consensus 187 ~Gl---------------------y~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 187 QGL---------------------YCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHH---------------------HHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
Confidence 322 12344566777766666553211112235555555444444
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.83 E-value=1.3e+02 Score=23.57 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048269 252 RIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT 285 (465)
Q Consensus 252 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 285 (465)
..++..+...++.-.|.++++++.+.+...+..|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3344444444444555555555555444443333
No 446
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.66 E-value=3e+02 Score=26.60 Aligned_cols=89 Identities=4% Similarity=-0.070 Sum_probs=43.3
Q ss_pred HHHHhcCCCChhHHHHHHHHHhhcC---CCC-CCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhC--CCC--ChHHHHH
Q 048269 43 LQICNNFPLSWRPVYLFFQYTQKAQ---PCF-AHNSITFNRMVDIIGKSR-NIDLFWETLQEMGRR--RLV--NDKTFKI 113 (465)
Q Consensus 43 ~~~l~~~~~~~~~a~~~f~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~--~~~--~~~~~~~ 113 (465)
.++|-....+.+.|..-++.+.... +.+ .-.-.++..|.+.|.... .+..+..++.+..+. +.| +-.....
T Consensus 53 g~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQ 132 (629)
T KOG2300|consen 53 GALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQ 132 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3444455556666665555442111 111 111234455555555554 566666666665542 223 1123334
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048269 114 ALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 114 l~~~~~~~~~~~~a~~~~ 131 (465)
++..+.-..++..|.+++
T Consensus 133 Laql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHhhhccchhHHHHH
Confidence 555555666666666653
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.15 E-value=2.4e+02 Score=25.36 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
++|+.|...++.|.-..+..+.-.+.+.=.+.+...+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555555445555555555555555544
No 448
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.77 E-value=87 Score=20.25 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=8.9
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 048269 223 FKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~ 240 (465)
.+.|++=+|-++++.+-.
T Consensus 10 ~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HcCCCHHHhHHHHHHHHH
Confidence 345555555555555543
No 449
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=43.74 E-value=1.5e+02 Score=28.29 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC--------cchHHHHHHHH----
Q 048269 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG--------LSTYRIVIDWM---- 258 (465)
Q Consensus 191 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------~~~~~~li~~~---- 258 (465)
+.+++-.++++.+.+.| .+| ....-|++|.+.+++++|..-+++-.+.|....| ..+...++...
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 44677777777777765 223 3445577788888888888887766553221111 11222222221
Q ss_pred -HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHH
Q 048269 259 -CKRGKISQAYTMLEEMFKRGIEAD---NLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREAT 334 (465)
Q Consensus 259 -~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 334 (465)
.++|. .++..+++.+...|+... ..+|+. -|++.=-++++..-|+.+ .-|+..|...|-. -=.
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~Wqyv--------dRL~g~y~e~gv~-Inr 211 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYC--------DRLVGFYEEQGVH-INR 211 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHH--------HHHHHHHHhcCce-ecc
Confidence 12222 245566666666554322 222322 345555566666655532 1233333332211 111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 048269 335 QVFREMIKRGCEPTMHTYIMLLQGHLG 361 (465)
Q Consensus 335 ~~~~~m~~~~~~p~~~~~~~ll~~~~~ 361 (465)
+.|.-|...=++|....-..+|.+++.
T Consensus 212 E~FGpLtgtLvPPsisiav~ilE~Lla 238 (480)
T TIGR01503 212 EPFGPLTGTLVPPSISNAIGIIEGLLA 238 (480)
T ss_pred ccccCCCCCccChHHHHHHHHHHHHHH
Confidence 333333322356666666666666543
No 450
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=43.06 E-value=1.9e+02 Score=23.93 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=13.9
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 048269 188 CDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~ 205 (465)
.+.|+++.|.+.++.|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355888888888888865
No 451
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.68 E-value=1.2e+02 Score=21.27 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=27.0
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
++|+.....|+..|..+|..++..+.-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 566666666666677777666666655555666666666665
No 452
>PRK10941 hypothetical protein; Provisional
Probab=42.66 E-value=2.4e+02 Score=24.93 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCcHHHHHHHHHHHH
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG-FEPSIDVVDKMIETFF 223 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~ 223 (465)
.+.+-.+|.+.++++.|..+.+.+..-.+.++.-+.--.-.|.+.|.+..|..=++...+.- -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 34566788999999999999999985456677777777778999999999999888887652 3455555555555544
No 453
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.27 E-value=5.1e+02 Score=28.30 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH----HHHHH
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPN----EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI----DVVDK 217 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ 217 (465)
|..+++.+-+.+..+.+.++-....+..+++ ..+++++.+.....|.+-+|...+ .+ .||. .....
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHH
Confidence 6667778888888888877776665333332 445667777777777777665543 22 2443 34556
Q ss_pred HHHHHHhcCCHHH------------HHH-HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269 218 MIETFFKINKDDE------------AMK-VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTM 270 (465)
Q Consensus 218 li~~~~~~g~~~~------------A~~-~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 270 (465)
++..++.+|+++. ... +++..- +.........|+.|-.-+...+++.+|-.+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaa-Rs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAA-RSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHh-hcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 6666677766543 333 222222 222221334555555556667777666544
No 454
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=41.11 E-value=1.5e+02 Score=24.70 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHhcCC
Q 048269 35 FNLTHEFFLQICNNFP 50 (465)
Q Consensus 35 ~~~~~~~~~~~l~~~~ 50 (465)
..++...+..+++..+
T Consensus 67 ~~~~~~~L~elIrpsG 82 (215)
T COG2231 67 LKLDEEELAELIRPSG 82 (215)
T ss_pred hcCCHHHHHHHHhccc
Confidence 4555555555554443
No 455
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.06 E-value=3.5e+02 Score=26.35 Aligned_cols=101 Identities=10% Similarity=0.098 Sum_probs=55.1
Q ss_pred HHHHHHHHHH-HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 230 EAMKVFQMMR-VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 230 ~A~~~~~~m~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
...+.+..+. ..|+.. +......++. ...|+...|+.++++....+- ...++..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~-e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~--~~it~~~V~~~l--------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQY-DQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTD--SKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHH--HcCChHHHHHHHHHHHHHhCC--CCcCHHHHHHHh---------------
Confidence 3444444443 245444 4455544443 345777777777776543211 112222221111
Q ss_pred hcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269 309 IEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT 351 (465)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 351 (465)
--.+...+..++.+....+....|+.++.+|.+.|..|....
T Consensus 244 -g~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 244 -GYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred -CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 113445556666666665666789999999999998776543
No 456
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=40.57 E-value=1.4e+02 Score=22.99 Aligned_cols=34 Identities=6% Similarity=-0.103 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChH
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDK 109 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 109 (465)
++..++--+...|+++.|+++.+.+.+.|.+.+.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 4445566677888888888888888888874433
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.53 E-value=1.7e+02 Score=24.41 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-KTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
....+.++..+.-.|+++.|-++|--+.+...++. ..|..-+..+.+.+.-....+.++.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 458
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.25 E-value=2.4e+02 Score=24.02 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=6.8
Q ss_pred HcCCCHHHHHHHHHHh
Q 048269 154 CQRKLVVEAKYLILKL 169 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m 169 (465)
...|+++.|++...++
T Consensus 75 I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 75 IEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHhccHHHHHHHHHHh
Confidence 3444444444444443
No 459
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=39.21 E-value=1.4e+02 Score=21.14 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.3
Q ss_pred HHhcCCHHH
Q 048269 118 LAEVRELKK 126 (465)
Q Consensus 118 ~~~~~~~~~ 126 (465)
+.+.++++-
T Consensus 75 L~~~~RF~l 83 (94)
T PF13877_consen 75 LSKVKRFDL 83 (94)
T ss_pred hcCCCCHHH
Confidence 333333333
No 460
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.05 E-value=2.8e+02 Score=27.99 Aligned_cols=74 Identities=1% Similarity=-0.069 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHH------HHHHHHHHhhhCCCCCCHHHHHHH
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRRL---VNDKTFKIALMTLAEVRELK------KMVNFFHIMNDCGCEYSLEMLNKV 149 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 149 (465)
+|+.+|...|++-.+.++++.....+. .-...+|..|+...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 899999999999999999999876543 23457899999999999864 3333333333 45688888877
Q ss_pred HHHHHc
Q 048269 150 VKTLCQ 155 (465)
Q Consensus 150 l~~~~~ 155 (465)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766544
No 461
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.92 E-value=4.5e+02 Score=26.96 Aligned_cols=84 Identities=5% Similarity=0.005 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHh
Q 048269 55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAE 120 (465)
Q Consensus 55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~ 120 (465)
.....+..+ ....|+..+......++.. ..|++..|+.+++++... |..+......++.+..+
T Consensus 181 EI~k~L~~I-l~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~d~e~IfdLldAI~k 257 (702)
T PRK14960 181 EITKHLGAI-LEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ 257 (702)
T ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 333333333 3334555555555444433 245566665555543322 12234445555555544
Q ss_pred cCCHHHHHHHHHHhhhCCCCCC
Q 048269 121 VRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
++...++.+++.+...|..++
T Consensus 258 -~d~~~al~~L~el~~~g~d~~ 278 (702)
T PRK14960 258 -NQREKVSQLLLQFRYQALDVS 278 (702)
T ss_pred -cCHHHHHHHHHHHHHhCCCHH
Confidence 677778888888887775544
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.80 E-value=2.9e+02 Score=24.67 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=60.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269 172 WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD----EGFEPSIDVVDK-MIETFFKINKDDEAMKVFQMMRVKRMDDL 246 (465)
Q Consensus 172 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 246 (465)
|..--..++..+...|++.+|.+.+.++.++..+ .|.+.|....-+ |.-.|....-.++-++..+.|.+.|....
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 3344456777888899999998888877666544 466655543322 22233344446777888888888876552
Q ss_pred CcchHHHHHHH-HHhcCChHHHHHHHHHHHH
Q 048269 247 GLSTYRIVIDW-MCKRGKISQAYTMLEEMFK 276 (465)
Q Consensus 247 ~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~ 276 (465)
...-|.+.-.. +....++.+|-.++-+...
T Consensus 190 RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 190 RRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 22222222111 2233456666666665543
No 463
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.73 E-value=2.8e+02 Score=24.58 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhc----CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCC
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKS----RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----VRE 123 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 123 (465)
+...+...+..+ .. .+ +......+...|... .+..+|.+.|..+.+.|.+. ....+...+.. ..+
T Consensus 56 ~~~~a~~~~~~a-~~-~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~--a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 56 DYAKALKSYEKA-AE-LG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE--ALFNLGLMYANGRGVPLD 128 (292)
T ss_pred cHHHHHHHHHHh-hh-cC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH--HHHhHHHHHhcCCCcccC
Confidence 455666666665 22 12 334444444444433 35677888888766666543 23334444433 347
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCC
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK-------LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGD 192 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~ 192 (465)
..+|...|+...+.|..+.......+...|.... +...|...|.+.-... +......|...|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 7888888888887774433233333444443321 2235666666655211 33333333333322 235
Q ss_pred HHHHHHHHHHHHHCC
Q 048269 193 LIEASKIWNLMTDEG 207 (465)
Q Consensus 193 ~~~a~~~~~~m~~~g 207 (465)
.++|...|....+.|
T Consensus 207 ~~~A~~wy~~Aa~~g 221 (292)
T COG0790 207 LKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666655
No 464
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.61 E-value=1.6e+02 Score=21.59 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=8.8
Q ss_pred HHHHcCCCHHHHHHHHHHhh
Q 048269 151 KTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~ 170 (465)
.-|...|+.++|...+.++.
T Consensus 10 ~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 10 MEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHT-HHHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHhC
Confidence 33444445555555554443
No 465
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=38.61 E-value=1.2e+02 Score=20.33 Aligned_cols=33 Identities=6% Similarity=0.072 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
+.+.|..++..+.....-++..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 445556666665554445666666666655443
No 466
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.31 E-value=2.6e+02 Score=25.99 Aligned_cols=84 Identities=4% Similarity=0.001 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---C-----------CCChHHHHHHHHHHH
Q 048269 54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---R-----------LVNDKTFKIALMTLA 119 (465)
Q Consensus 54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-----------~~~~~~~~~l~~~~~ 119 (465)
+......... ..+.|+..+......++.. ..|+...+...++.+... + .........++.+.
T Consensus 170 ~~l~~~l~~~-~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~ai- 245 (367)
T PRK14970 170 KDIKEHLAGI-AVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDLI- 245 (367)
T ss_pred HHHHHHHHHH-HHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 3333344433 3355666677777766654 246777777777765421 1 11222233344444
Q ss_pred hcCCHHHHHHHHHHhhhCCCCC
Q 048269 120 EVRELKKMVNFFHIMNDCGCEY 141 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~ 141 (465)
..++..++...++.+...|..|
T Consensus 246 ~~~~~~~a~~~~~~l~~~~~~~ 267 (367)
T PRK14970 246 LENKIPELLLAFNEILRKGFDG 267 (367)
T ss_pred HcCCHHHHHHHHHHHHHcCCCH
Confidence 4589999999999998887655
No 467
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.08 E-value=4e+02 Score=26.11 Aligned_cols=75 Identities=8% Similarity=0.145 Sum_probs=46.9
Q ss_pred cCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------------CCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 66 AQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--------------LVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
...|+..+......++.. ..|++..|...++.+...+ ..+......++.+. ..|+.+.|+.++
T Consensus 192 k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~~~~~~vf~Li~ai-~~~d~~~al~~l 268 (486)
T PRK14953 192 NEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQESVRKFLNLL-LESDVDEAIKFL 268 (486)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHH
Confidence 345666666666665543 3477777777776653221 12223344555554 558999999999
Q ss_pred HHhhhCCCCCCH
Q 048269 132 HIMNDCGCEYSL 143 (465)
Q Consensus 132 ~~~~~~~~~~~~ 143 (465)
+.+...|..|..
T Consensus 269 ~~L~~~g~~~~~ 280 (486)
T PRK14953 269 RTLEEKGYNLNK 280 (486)
T ss_pred HHHHHcCCCHHH
Confidence 999988755543
No 468
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=37.69 E-value=1.8e+02 Score=22.13 Aligned_cols=61 Identities=7% Similarity=-0.004 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA 119 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (465)
.+|.-|.+++... ...+ -+...++.+....---.+.++..++.....++....+..+..|.
T Consensus 3 nNp~IA~~~l~~l-~~s~-------~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI 63 (126)
T PF10155_consen 3 NNPNIAIEILVKL-INSP-------NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCI 63 (126)
T ss_pred CcHHHHHHHHHHH-cCCc-------hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 3566666666664 2221 16666666666666667777777776655555555555555443
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.60 E-value=2.4e+02 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 048269 217 KMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m 238 (465)
.++.-|.+.++.++|..++..|
T Consensus 413 eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhC
Confidence 3444455555555555555544
No 470
>PRK09857 putative transposase; Provisional
Probab=37.58 E-value=3.1e+02 Score=24.65 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD 244 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 244 (465)
++....+.++.++..++++.+.+. .+.......++..-+.+.|.-+++.++...|...|+.
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 333333444444444444444333 1112222223333344444444555555555555544
No 471
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=37.33 E-value=3.4e+02 Score=26.20 Aligned_cols=72 Identities=4% Similarity=-0.082 Sum_probs=43.5
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 67 QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAEVRELKKMVNFFH 132 (465)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (465)
+.|...+......++... .|++..|...++.+... +.........++. ....++.++|+.+++
T Consensus 195 ~eg~~i~~~al~~L~~~s--~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~-ai~~~d~~~al~~l~ 271 (451)
T PRK06305 195 QEGIETSREALLPIARAA--QGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDE-AITTQNYAQALEPVT 271 (451)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHHHHHH-HHHcCCHHHHHHHHH
Confidence 345556666666555444 46777777776654321 1112223334454 456689999999999
Q ss_pred HhhhCCCCC
Q 048269 133 IMNDCGCEY 141 (465)
Q Consensus 133 ~~~~~~~~~ 141 (465)
.+...|..|
T Consensus 272 ~L~~~g~~~ 280 (451)
T PRK06305 272 DAMNSGVAP 280 (451)
T ss_pred HHHHcCcCH
Confidence 998887554
No 472
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.93 E-value=4.5e+02 Score=26.43 Aligned_cols=72 Identities=8% Similarity=0.060 Sum_probs=37.7
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 67 QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAEVRELKKMVNFFH 132 (465)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (465)
+.|+..+......++... .|++..|+..++++... |..+......++.+ ...++...++.+++
T Consensus 193 ~egi~i~~~al~~la~~a--~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~~~~l~~ll~a-l~~~d~~~al~~l~ 269 (576)
T PRK14965 193 QEGISISDAALALVARKG--DGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVDRRLLLDISAA-VFGRDTRALLEIVE 269 (576)
T ss_pred HhCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 345555555554444332 25566666666554322 11122222233333 34577888888888
Q ss_pred HhhhCCCCC
Q 048269 133 IMNDCGCEY 141 (465)
Q Consensus 133 ~~~~~~~~~ 141 (465)
.+...|..+
T Consensus 270 ~l~~~G~~~ 278 (576)
T PRK14965 270 RVDEFGYNM 278 (576)
T ss_pred HHHHhCCCH
Confidence 888877543
No 473
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.48 E-value=83 Score=21.23 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=28.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269 383 VKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (465)
...|+.+.+.+++++..+.|..|.......+.-+..+-|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 466888999999999998888777766666666655544
No 474
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=3.4e+02 Score=24.84 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048269 377 IFVGGLVKAGKSLDAAKYVERVM 399 (465)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~ 399 (465)
-++..|...+++.+|..+...+.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~ 155 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLL 155 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 37888889999999887755543
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.04 E-value=2.5e+02 Score=23.14 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=10.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048269 323 GLLRLRRAREATQVFREMI 341 (465)
Q Consensus 323 ~~~~~~~~~~a~~~~~~m~ 341 (465)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4555555555555555554
No 476
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.73 E-value=4.8e+02 Score=26.33 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCC------------hHHHHHHHHHH
Q 048269 53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--RLVN------------DKTFKIALMTL 118 (465)
Q Consensus 53 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~l~~~~ 118 (465)
.......+.+. ..+.|+..+......++... .|++..++..++++... +..+ ......++.+.
T Consensus 181 ~~el~~~L~~~-a~~egl~i~~eal~~La~~s--~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~s~~~~vf~Lidal 257 (585)
T PRK14950 181 VADMAAHLRKI-AAAEGINLEPGALEAIARAA--TGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGDEEVKALAEAL 257 (585)
T ss_pred HHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 33444444444 34456666666666665543 37777777777765431 1121 12233455544
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCC
Q 048269 119 AEVRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
..|+...++++++.+.+.|..+.
T Consensus 258 -~~~d~~~al~~l~~L~~~g~~~~ 280 (585)
T PRK14950 258 -LAKDLKAALRTLNAVAADGADLR 280 (585)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCHH
Confidence 45899999999999998876443
No 477
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.65 E-value=3.5e+02 Score=24.76 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCC-C
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNLMTD---EGFEPSIDVV--DKMIETFFKINKDDEAMKVFQMMRV-----KRMDD-L 246 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~-~ 246 (465)
.....++...-+.+|.++|+++++++.+ .--.|+.+.| +.+.+++...|+..++.+.+++... .+++| .
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred CcchHHHHHHHHHhcCChHHHHH
Q 048269 247 GLSTYRIVIDWMCKRGKISQAYT 269 (465)
Q Consensus 247 ~~~~~~~li~~~~~~~~~~~a~~ 269 (465)
....|..=-..|-..|++....+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 478
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.57 E-value=3.1e+02 Score=24.10 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 282 DNLTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
|+.....+...|.+.|++.+|...|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 566666777777777777777766543
No 479
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=35.45 E-value=1.9e+02 Score=22.02 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 372 VNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
..+-.++.-++.-.|..+.|.++++... ..++-. .-..+++.|.+..+-++..++-++..
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~Fk---WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFK---WGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 4456777888899999999999988764 555544 34578999999988888888777654
No 480
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.36 E-value=3.3e+02 Score=27.58 Aligned_cols=74 Identities=7% Similarity=0.053 Sum_probs=42.5
Q ss_pred cCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 66 AQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
.+.|+..+......++... .|++..|...++.+... +..+...+..++.+.. .++..+|+.++
T Consensus 194 ~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ll 270 (614)
T PRK14971 194 SKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLLLF 270 (614)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3445666665555555443 46666666666554211 1123333444444443 46888899999
Q ss_pred HHhhhCCCCCC
Q 048269 132 HIMNDCGCEYS 142 (465)
Q Consensus 132 ~~~~~~~~~~~ 142 (465)
+.+...|..|.
T Consensus 271 ~~Ll~~g~~~~ 281 (614)
T PRK14971 271 DEILNKGFDGS 281 (614)
T ss_pred HHHHHcCCCHH
Confidence 99888776554
No 481
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.32 E-value=2e+02 Score=23.25 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
.++..+....+.-.|.++++.+.+.+...+..|...-|..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44444444455556666666666666555555544455555555543
No 482
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.75 E-value=4.2e+02 Score=25.37 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048269 287 SSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRG 344 (465)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 344 (465)
..|+.-|...|++.+|.+.++++.- .....+.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4455666677777777777776655 344567777777777777777777777666554
No 483
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=3.6e+02 Score=24.59 Aligned_cols=131 Identities=16% Similarity=0.219 Sum_probs=70.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCH
Q 048269 208 FEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF----KRGIEADN 283 (465)
Q Consensus 208 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~~ 283 (465)
+..|...++.|..+ +..+.++-.+..+...+......-...+-....-||+.||.+.|.+.+.+.. ..|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44555555555442 1223333334444444331111123456666778899999999888776554 34677777
Q ss_pred HHHHHHHHH-HHhc----CCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 284 LTLSSIIYG-LLAR----GRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 284 ~~~~~li~~-~~~~----~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
..+..=+.. |... ..++.|..++++--+ .-..+|..+-. ....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 665443332 2222 235555555555444 33345554433 334578888888877664
No 484
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.70 E-value=3.9e+02 Score=25.08 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 048269 186 GYCDVGDLIEASKIWNLMTDEGFEPSID--VVDKMIETFFK--INKDDEAMKVFQMMRV 240 (465)
Q Consensus 186 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~ 240 (465)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334566677777777776665 444433 33334444332 3455566666665544
No 485
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.60 E-value=4.3e+02 Score=27.81 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCch
Q 048269 387 KSLDAAKYVERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLA 442 (465)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 442 (465)
..+.+.++-.......++|-.. +....+..+.+.+++..|..+..++++.+-.+..
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3444444444444455666443 6777888999999999999999999998755443
No 486
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.49 E-value=4e+02 Score=25.11 Aligned_cols=159 Identities=13% Similarity=0.093 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhc----------CCCC
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY---SLEMLNKVVKTLCQRKLVVEAKYLILKLSE----------WIKP 175 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----------~~~~ 175 (465)
..+.-+...|...|+++.|++.|.+.... +.. .+..|-.+|..-.-.|+|.....+..+... .+++
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 46778889999999999999999986553 222 233455566666667887777666666552 1333
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----CCCcHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHHcCCC
Q 048269 176 NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE-G-----FEPSIDVVDKMIETFFKINKDDEAMKV-----FQMMRVKRMD 244 (465)
Q Consensus 176 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----~~~~~~~~~~li~~~~~~g~~~~A~~~-----~~~m~~~~~~ 244 (465)
-...+..|..... +++..|.+.|-..... + +.|...+....+.+..-.++-+.-..+ |+.+.+.
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel--- 304 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL--- 304 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence 3444444444433 3666666555433221 1 223333333444444444443332222 3333322
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.+..+..+..-| .+++...++++++++..
T Consensus 305 --~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 305 --EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred --ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 334454444444 35677788888777643
No 487
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.38 E-value=2.5e+02 Score=22.69 Aligned_cols=58 Identities=9% Similarity=0.133 Sum_probs=25.6
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
+++.|+.++..=. .++..+...++.-.|.++++.+.+.+... +..|...-|..+...|
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~i-s~aTVYRtL~~L~e~G 74 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQA-KPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCC-CcchHHHHHHHHHHCC
Confidence 3444554444322 33333333344445555565555554433 4333333344444444
No 488
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=34.09 E-value=6.3e+02 Score=27.28 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHHhhh
Q 048269 382 LVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRERR 458 (465)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 458 (465)
|.....+.++..+|+.|...|+.+... .|......+.+.+.+++|..+++.-++..-.|...+-..+......-.++
T Consensus 88 ~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 88 LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 346678899999999999999888665 77777778888899999999999999888888887777777655444433
No 489
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.89 E-value=4.1e+02 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 113 IALMTLAEVRELKKMVNFFHIMND--CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
.|++.+.-.|+.....+.++.|.+ .|..|...+--.+.-+|.-.|++.+|.+.|....
T Consensus 240 GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 240 GLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666665666655554 1222221111233444555556666666665543
No 490
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.45 E-value=6.3e+02 Score=27.06 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=14.6
Q ss_pred CCCCCCHHHHHHHHhcCCCChhHHHHHHHH
Q 048269 33 CNFNLTHEFFLQICNNFPLSWRPVYLFFQY 62 (465)
Q Consensus 33 ~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~ 62 (465)
.++.++...+..+.....++++.|+.+++.
T Consensus 194 EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 194 EQLPFEAEALTLLAKAANGSMRDALSLTDQ 223 (944)
T ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455545544444444455555555544
No 491
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=33.44 E-value=5.2e+02 Score=26.11 Aligned_cols=85 Identities=7% Similarity=0.158 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------------CCChHHHHHHHHHHHh
Q 048269 55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR--------------LVNDKTFKIALMTLAE 120 (465)
Q Consensus 55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~ 120 (465)
.....+... ..+.|...+......++... .|++..|...++.+.... ..+......++.+ ..
T Consensus 182 eL~~~L~~i-l~kegi~Is~eal~~La~lS--~GdlR~AlnlLekL~~y~~~~It~e~V~ellg~~~~~~Vf~Ll~A-I~ 257 (605)
T PRK05896 182 ELQELLKSI-AKKEKIKIEDNAIDKIADLA--DGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLVDNNKKINLIEL-IQ 257 (605)
T ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCCHHHHHHHHHH-HH
Confidence 333344443 23345455555555444333 466777777776643321 1122222233433 35
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCH
Q 048269 121 VRELKKMVNFFHIMNDCGCEYSL 143 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~~~~~~ 143 (465)
.++...|+.++..+...|..|..
T Consensus 258 ~kd~~~al~~l~~Ll~~ge~~~~ 280 (605)
T PRK05896 258 KNDIEELRNLINELESKGINFEA 280 (605)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 57888888888888887755543
No 492
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=33.36 E-value=1.2e+02 Score=18.83 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048269 320 LIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358 (465)
Q Consensus 320 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 358 (465)
+.-++.+.|++++|.+..+.+++. .|+..-...+-..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHHHH
Confidence 445677888888888888888754 6766655554443
No 493
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.22 E-value=5.3e+02 Score=26.17 Aligned_cols=82 Identities=7% Similarity=0.011 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC--C------------ChHHHHHHHHHHH
Q 048269 54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL--V------------NDKTFKIALMTLA 119 (465)
Q Consensus 54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~------------~~~~~~~l~~~~~ 119 (465)
+.....+... ....|+..+......++... .|++..|+.+++++...+. . +...+..++.++
T Consensus 181 ~eL~~~L~~i-l~~egi~id~eal~lIA~~s--~GdlR~Al~lLeqll~~g~~~It~d~V~~~lg~~~~e~vfeLl~AL- 256 (624)
T PRK14959 181 AGLEAHLTKV-LGREGVDYDPAAVRLIARRA--AGSVRDSMSLLGQVLALGESRLTIDGARGVLGLAGQELFLRLMEAL- 256 (624)
T ss_pred HHHHHHHHHH-HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 3344444443 33445555666666555433 4777777777765543221 1 222344455554
Q ss_pred hcCCHHHHHHHHHHhhhCCC
Q 048269 120 EVRELKKMVNFFHIMNDCGC 139 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~ 139 (465)
..++...++.++..+.+.|.
T Consensus 257 ~~~D~~aal~~l~~Ll~~g~ 276 (624)
T PRK14959 257 AAQDCLGVANVVRELLDRGV 276 (624)
T ss_pred hcCCHHHHHHHHHHHHHcCC
Confidence 56788888888888887664
No 494
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.95 E-value=3.7e+02 Score=24.20 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=28.2
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269 182 WLIKGYCDV---GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226 (465)
Q Consensus 182 ~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 226 (465)
-+|+++.++ .|.+.|+-++..|.+.|-.|....-..++.+.-.-|
T Consensus 128 d~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 128 EQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345555433 677777777778877776666655555555555444
No 495
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.66 E-value=6.2e+02 Score=26.76 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHH
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYY 417 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~ 417 (465)
.+..+.+..+.+.+++..|..+-.++++.+-.|... .-+..+.++
T Consensus 1085 lalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ 1130 (1202)
T KOG0292|consen 1085 LALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAA 1130 (1202)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Confidence 355677888999999999999999999876555544 333344333
No 496
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.49 E-value=1.2e+02 Score=22.44 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV 423 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (465)
++..+...+..-.|.++++++.+.+..++..|....|+.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444556677778889999998877666777665566666665543
No 497
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.43 E-value=3.2e+02 Score=24.62 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----------cCCHHHH
Q 048269 163 KYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK----------INKDDEA 231 (465)
Q Consensus 163 ~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------~g~~~~A 231 (465)
.++++.+. .++.|.-.+|.-+.-.+.+.=.+..++.+|+.+... ..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45667777 778888888888877788888888888888888753 3336666665553 4888888
Q ss_pred HHHHHH
Q 048269 232 MKVFQM 237 (465)
Q Consensus 232 ~~~~~~ 237 (465)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888764
No 498
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=32.40 E-value=1e+02 Score=20.57 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhhcCCCCchhHHhhhhhCCCCCCHHHHHHHHhcCC
Q 048269 6 GHLVRVCTILYQQQYSPESRLHSSLSSCNFNLTHEFFLQICNNFP 50 (465)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 50 (465)
.....+..++.+..-+...++...|...|+.++-.++..-|+.+.
T Consensus 5 ~R~~~I~~li~~~~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 5 KRQELIKELISEHEISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp HHHHHHHHHHHHS---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 345667788888877777789999999999999999998887654
No 499
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.33 E-value=6.1e+02 Score=26.59 Aligned_cols=32 Identities=6% Similarity=0.012 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCC
Q 048269 142 SLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIK 174 (465)
Q Consensus 142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~ 174 (465)
+...+..++..+. .++..+++.+++++. .|..
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLS 277 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Confidence 3334444555433 366666666666666 4443
No 500
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.22 E-value=5e+02 Score=25.57 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCH
Q 048269 141 YSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNE 177 (465)
Q Consensus 141 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~ 177 (465)
.+....-.++.+.. .|+...|+.+++++. .|..|..
T Consensus 256 ~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 256 VDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHH
Confidence 34444555666655 489999999999998 7766543
Done!