Query 048269
Match_columns 465
No_of_seqs 557 out of 2847
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 13:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-33 9E-38 277.3 35.4 405 40-456 85-564 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.7E-32 9.2E-37 270.0 37.7 387 51-450 131-592 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.9E-32 9.8E-37 259.5 24.0 204 92-296 8-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.4E-31 1.2E-35 252.1 24.4 202 125-327 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-26 1.2E-30 213.6 44.4 367 51-452 13-383 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-25 5.3E-30 209.3 41.3 361 27-421 23-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 7.2E-23 2.4E-27 195.1 37.6 329 73-433 25-406 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9.6E-22 3.3E-26 187.3 38.6 333 90-451 8-372 (450)
9 2gw1_A Mitochondrial precursor 99.9 5.1E-22 1.7E-26 192.5 36.2 358 51-437 20-479 (514)
10 3fp2_A TPR repeat-containing p 99.9 8.4E-21 2.9E-25 185.0 33.4 360 51-438 39-493 (537)
11 2gw1_A Mitochondrial precursor 99.9 1.9E-20 6.5E-25 181.4 34.6 352 73-455 5-462 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2E-19 6.7E-24 165.6 38.8 318 73-436 2-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 7.3E-19 2.5E-23 161.8 40.4 300 108-456 3-320 (359)
14 3fp2_A TPR repeat-containing p 99.9 2.1E-18 7.1E-23 168.1 38.5 352 73-456 24-476 (537)
15 3hym_B Cell division cycle pro 99.9 4.9E-19 1.7E-23 161.1 30.0 274 70-349 18-303 (330)
16 3hym_B Cell division cycle pro 99.9 2.1E-18 7.2E-23 156.8 32.0 300 26-331 11-322 (330)
17 1fch_A Peroxisomal targeting s 99.8 1E-18 3.4E-23 161.7 27.0 286 51-340 39-356 (368)
18 4eqf_A PEX5-related protein; a 99.8 1.5E-18 5.2E-23 160.4 23.9 263 73-339 64-352 (365)
19 1fch_A Peroxisomal targeting s 99.8 2.6E-18 8.8E-23 158.9 25.3 285 121-434 38-357 (368)
20 3cv0_A Peroxisome targeting si 99.8 1E-17 3.5E-22 152.1 26.1 264 73-341 20-313 (327)
21 2xm6_A Protein corresponding t 99.8 6.4E-15 2.2E-19 141.6 46.2 339 50-439 56-435 (490)
22 4eqf_A PEX5-related protein; a 99.8 5.6E-18 1.9E-22 156.5 20.8 262 144-432 66-352 (365)
23 2xm6_A Protein corresponding t 99.8 5.5E-14 1.9E-18 135.1 46.9 344 55-452 25-409 (490)
24 3spa_A Mtrpol, DNA-directed RN 99.8 2.6E-19 8.8E-24 175.6 8.6 113 144-257 128-245 (1134)
25 3spa_A Mtrpol, DNA-directed RN 99.8 2.6E-19 8.9E-24 175.6 8.4 150 108-262 127-286 (1134)
26 3cv0_A Peroxisome targeting si 99.8 9.7E-17 3.3E-21 145.6 25.0 256 49-311 33-314 (327)
27 1b89_A Protein (clathrin heavy 99.8 1.5E-17 5E-22 151.4 18.2 293 42-394 9-304 (449)
28 2ooe_A Cleavage stimulation fa 99.8 2.5E-14 8.6E-19 138.9 41.0 354 51-437 26-455 (530)
29 4g1t_A Interferon-induced prot 99.8 9.2E-15 3.2E-19 139.9 36.4 343 71-437 48-460 (472)
30 3mkr_A Coatomer subunit epsilo 99.8 7.3E-16 2.5E-20 137.0 26.4 253 81-350 6-269 (291)
31 3mkr_A Coatomer subunit epsilo 99.8 1.2E-15 4.1E-20 135.6 27.4 270 115-428 6-286 (291)
32 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.6E-21 145.8 19.1 248 52-336 47-304 (449)
33 2ooe_A Cleavage stimulation fa 99.7 1.1E-13 3.6E-18 134.5 41.1 401 1-436 9-492 (530)
34 1xi4_A Clathrin heavy chain; a 99.7 6.7E-14 2.3E-18 142.0 37.6 349 34-431 980-1340(1630)
35 2pl2_A Hypothetical conserved 99.7 8.6E-16 3E-20 130.5 20.3 200 71-275 2-212 (217)
36 4g1t_A Interferon-induced prot 99.7 7.3E-15 2.5E-19 140.6 28.2 360 44-410 58-469 (472)
37 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.6E-19 126.0 24.1 222 74-342 5-235 (258)
38 1xi4_A Clathrin heavy chain; a 99.7 2.3E-12 7.7E-17 131.1 41.9 270 86-393 1088-1376(1630)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.7E-15 5.8E-20 133.8 17.3 245 87-337 18-269 (275)
40 2ho1_A Type 4 fimbrial biogene 99.7 5.3E-14 1.8E-18 122.4 26.0 200 74-277 37-238 (252)
41 2vq2_A PILW, putative fimbrial 99.7 8E-14 2.7E-18 118.8 25.4 202 73-277 7-211 (225)
42 3uq3_A Heat shock protein STI1 99.7 4.1E-14 1.4E-18 123.5 23.9 212 50-277 18-236 (258)
43 3u4t_A TPR repeat-containing p 99.7 4.1E-14 1.4E-18 124.7 23.6 236 73-311 2-249 (272)
44 2pl2_A Hypothetical conserved 99.7 1.8E-14 6.2E-19 122.3 20.4 196 107-308 4-210 (217)
45 2q7f_A YRRB protein; TPR, prot 99.6 1.6E-14 5.6E-19 124.8 20.2 204 71-278 20-223 (243)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-13 5.5E-18 119.4 25.1 198 109-310 38-236 (252)
47 2h6f_A Protein farnesyltransfe 99.6 9.1E-14 3.1E-18 127.7 24.3 233 73-311 96-347 (382)
48 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5.2E-18 117.1 24.3 200 108-310 8-209 (225)
49 1ouv_A Conserved hypothetical 99.6 3E-12 1E-16 112.8 30.9 220 73-309 5-248 (273)
50 3u4t_A TPR repeat-containing p 99.6 4.8E-13 1.7E-17 117.7 25.1 247 145-413 5-261 (272)
51 4a1s_A PINS, partner of inscut 99.6 8.9E-14 3E-18 130.4 21.5 270 74-343 48-372 (411)
52 1ouv_A Conserved hypothetical 99.6 3.3E-12 1.1E-16 112.6 30.4 223 107-344 5-252 (273)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.1E-13 3.6E-18 122.2 20.0 247 52-306 20-269 (275)
54 3sf4_A G-protein-signaling mod 99.6 2.8E-13 9.7E-18 126.6 23.5 273 71-343 6-336 (406)
55 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-13 4.2E-18 119.3 19.1 200 107-311 22-221 (243)
56 3ro2_A PINS homolog, G-protein 99.6 2.9E-13 9.9E-18 122.8 22.4 269 75-343 6-332 (338)
57 2h6f_A Protein farnesyltransfe 99.6 8.3E-13 2.8E-17 121.4 24.5 239 108-353 97-356 (382)
58 3sf4_A G-protein-signaling mod 99.5 9.3E-13 3.2E-17 123.1 22.9 297 107-423 8-363 (406)
59 4a1s_A PINS, partner of inscut 99.5 3.9E-13 1.3E-17 126.1 20.1 279 110-437 50-373 (411)
60 2ond_A Cleavage stimulation fa 99.5 6.6E-12 2.2E-16 112.7 27.0 218 91-311 33-269 (308)
61 2ond_A Cleavage stimulation fa 99.5 5.8E-12 2E-16 113.1 25.8 219 54-278 33-271 (308)
62 3vtx_A MAMA; tetratricopeptide 99.5 3.4E-12 1.2E-16 105.1 21.3 167 73-241 4-170 (184)
63 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.6E-17 119.1 19.9 278 110-436 7-332 (338)
64 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-11 5.5E-16 116.2 28.1 334 52-436 53-421 (452)
65 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.6E-17 124.5 19.9 213 90-308 84-317 (474)
66 3e4b_A ALGK; tetratricopeptide 99.5 8E-12 2.7E-16 118.3 24.3 338 52-439 18-390 (452)
67 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-11 4.2E-16 101.7 21.7 167 107-277 4-170 (184)
68 3nf1_A KLC 1, kinesin light ch 99.5 6.6E-13 2.3E-17 119.2 13.5 241 73-342 26-306 (311)
69 3nf1_A KLC 1, kinesin light ch 99.5 1.8E-12 6.2E-17 116.3 16.2 246 143-436 27-307 (311)
70 4abn_A Tetratricopeptide repea 99.4 3.8E-12 1.3E-16 121.3 18.9 213 123-340 83-318 (474)
71 3ulq_A Response regulator aspa 99.4 3E-11 1E-15 112.0 23.2 293 51-343 26-368 (383)
72 3ulq_A Response regulator aspa 99.4 5.1E-11 1.7E-15 110.5 24.0 290 84-400 22-367 (383)
73 3as5_A MAMA; tetratricopeptide 99.4 2.9E-11 1E-15 99.3 19.6 164 75-240 9-172 (186)
74 4e6h_A MRNA 3'-END-processing 99.4 4.6E-09 1.6E-13 103.1 37.9 375 56-436 51-570 (679)
75 1hz4_A MALT regulatory protein 99.4 3.5E-10 1.2E-14 104.4 27.5 266 77-342 17-321 (373)
76 3as5_A MAMA; tetratricopeptide 99.4 9.2E-11 3.1E-15 96.2 19.9 165 109-277 9-173 (186)
77 3q15_A PSP28, response regulat 99.3 2.4E-10 8.2E-15 105.8 23.5 305 70-400 6-364 (378)
78 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.4E-14 99.5 29.5 271 111-400 17-321 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.3 6.3E-11 2.2E-15 117.6 19.5 166 73-240 8-173 (723)
80 4i17_A Hypothetical protein; T 99.3 2.6E-10 8.8E-15 97.4 21.0 195 72-278 5-210 (228)
81 3q15_A PSP28, response regulat 99.3 6.8E-10 2.3E-14 102.7 24.8 292 51-342 26-364 (378)
82 3edt_B KLC 2, kinesin light ch 99.3 6.8E-11 2.3E-15 104.3 15.3 155 86-240 13-197 (283)
83 4gyw_A UDP-N-acetylglucosamine 99.3 2.5E-10 8.7E-15 113.3 20.3 166 107-276 8-173 (723)
84 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4E-15 102.7 14.8 201 142-342 42-280 (283)
85 4i17_A Hypothetical protein; T 99.2 1.5E-09 5.1E-14 92.5 20.5 195 106-311 5-208 (228)
86 1qqe_A Vesicular transport pro 99.2 1.5E-09 5.3E-14 96.3 20.2 98 214-311 119-227 (292)
87 1qqe_A Vesicular transport pro 99.2 4.4E-09 1.5E-13 93.3 21.8 213 89-315 32-272 (292)
88 2fo7_A Synthetic consensus TPR 99.2 1.5E-09 5E-14 83.7 16.5 128 77-205 4-131 (136)
89 3qky_A Outer membrane assembly 99.2 1.9E-09 6.4E-14 94.1 18.5 109 72-180 13-134 (261)
90 4e6h_A MRNA 3'-END-processing 99.2 3.8E-07 1.3E-11 89.6 35.8 218 195-418 327-585 (679)
91 3urz_A Uncharacterized protein 99.1 2.8E-09 9.6E-14 89.4 16.2 114 74-188 4-133 (208)
92 3mv2_B Coatomer subunit epsilo 99.1 5.3E-08 1.8E-12 85.0 23.9 242 82-348 21-285 (310)
93 2fo7_A Synthetic consensus TPR 99.1 6.9E-09 2.4E-13 79.8 16.8 129 110-240 3-131 (136)
94 3qky_A Outer membrane assembly 99.1 5.3E-09 1.8E-13 91.2 17.7 99 107-206 14-126 (261)
95 3mv2_B Coatomer subunit epsilo 99.0 2.2E-08 7.7E-13 87.4 19.0 177 127-311 85-281 (310)
96 2pzi_A Probable serine/threoni 99.0 2.1E-09 7.1E-14 107.1 14.3 152 85-239 402-561 (681)
97 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.7E-08 9.2E-13 84.5 18.8 187 73-279 3-215 (225)
98 2r5s_A Uncharacterized protein 99.0 6.4E-09 2.2E-13 84.6 13.6 160 77-238 9-170 (176)
99 2r5s_A Uncharacterized protein 99.0 9.6E-09 3.3E-13 83.6 14.5 163 110-275 8-171 (176)
100 2pzi_A Probable serine/threoni 99.0 5.2E-09 1.8E-13 104.2 15.3 170 51-227 405-583 (681)
101 3dra_A Protein farnesyltransfe 99.0 3.1E-07 1E-11 81.0 24.8 220 52-276 48-286 (306)
102 3urz_A Uncharacterized protein 99.0 2E-08 7E-13 84.1 16.6 74 183-259 60-133 (208)
103 2vsy_A XCC0866; transferase, g 99.0 1.8E-08 6E-13 98.6 18.1 151 52-206 4-157 (568)
104 3dra_A Protein farnesyltransfe 99.0 3E-07 1E-11 81.1 23.7 219 88-310 47-285 (306)
105 3qou_A Protein YBBN; thioredox 99.0 3.6E-08 1.2E-12 87.2 17.4 161 110-273 119-280 (287)
106 2qfc_A PLCR protein; TPR, HTH, 99.0 4E-07 1.4E-11 80.7 24.3 201 31-237 38-262 (293)
107 3qou_A Protein YBBN; thioredox 98.9 4.6E-08 1.6E-12 86.5 17.7 166 140-309 114-281 (287)
108 4ga2_A E3 SUMO-protein ligase 98.9 4E-09 1.4E-13 83.2 9.5 54 114-168 37-90 (150)
109 2yhc_A BAMD, UPF0169 lipoprote 98.9 9.6E-08 3.3E-12 81.1 18.6 186 107-311 3-212 (225)
110 2vsy_A XCC0866; transferase, g 98.9 3.2E-08 1.1E-12 96.7 17.5 154 87-242 2-158 (568)
111 3u3w_A Transcriptional activat 98.9 4.8E-07 1.6E-11 80.2 22.3 159 80-238 81-263 (293)
112 3rjv_A Putative SEL1 repeat pr 98.9 2.9E-07 9.9E-12 77.2 19.7 92 73-170 17-116 (212)
113 4ga2_A E3 SUMO-protein ligase 98.9 1.8E-08 6.1E-13 79.5 11.3 137 52-192 12-149 (150)
114 3rjv_A Putative SEL1 repeat pr 98.8 4.9E-07 1.7E-11 75.8 19.9 178 92-280 4-200 (212)
115 2uy1_A Cleavage stimulation fa 98.8 1.1E-05 3.7E-10 76.8 31.2 354 38-435 14-412 (493)
116 1a17_A Serine/threonine protei 98.8 2.1E-07 7.2E-12 74.4 15.3 94 76-170 15-108 (166)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 1.7E-07 5.7E-12 83.8 15.6 174 87-275 29-222 (307)
118 3q7a_A Farnesyltransferase alp 98.8 4.4E-06 1.5E-10 74.4 23.8 172 88-263 68-257 (349)
119 1na0_A Designed protein CTPR3; 98.8 3.3E-07 1.1E-11 69.1 14.5 113 74-187 9-121 (125)
120 4gco_A Protein STI-1; structur 98.8 2.4E-07 8.1E-12 70.4 13.5 108 75-183 14-121 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.7E-07 2.6E-11 74.5 18.0 127 76-206 8-150 (213)
122 3q7a_A Farnesyltransferase alp 98.7 6E-06 2.1E-10 73.6 24.2 222 51-277 68-331 (349)
123 2lni_A Stress-induced-phosphop 98.7 2.6E-07 8.9E-12 70.7 13.7 120 71-191 13-132 (133)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.7E-07 3.3E-11 73.9 18.4 89 113-205 11-99 (213)
125 2c2l_A CHIP, carboxy terminus 98.7 5.2E-08 1.8E-12 85.8 10.8 97 73-170 3-99 (281)
126 3u3w_A Transcriptional activat 98.7 1.8E-06 6.2E-11 76.4 20.9 159 183-341 81-264 (293)
127 2ifu_A Gamma-SNAP; membrane fu 98.7 2.9E-07 1E-11 82.2 15.5 189 76-269 38-253 (307)
128 2vyi_A SGTA protein; chaperone 98.7 3.3E-07 1.1E-11 69.7 13.3 119 73-192 11-129 (131)
129 4f3v_A ESX-1 secretion system 98.7 1.1E-06 3.8E-11 75.7 17.4 190 86-277 18-237 (282)
130 2qfc_A PLCR protein; TPR, HTH, 98.7 3E-06 1E-10 75.0 20.7 163 179-341 77-264 (293)
131 4f3v_A ESX-1 secretion system 98.7 3.3E-07 1.1E-11 78.9 13.8 190 49-245 18-239 (282)
132 1a17_A Serine/threonine protei 98.7 9.5E-07 3.2E-11 70.5 15.6 127 110-238 15-143 (166)
133 2e2e_A Formate-dependent nitri 98.7 1.1E-07 3.8E-12 77.2 9.9 120 86-206 22-144 (177)
134 3gyz_A Chaperone protein IPGC; 98.6 4.1E-07 1.4E-11 71.4 12.2 99 107-206 35-133 (151)
135 3gyz_A Chaperone protein IPGC; 98.6 1.7E-07 5.7E-12 73.6 10.0 97 73-170 35-131 (151)
136 3gw4_A Uncharacterized protein 98.6 4.3E-07 1.5E-11 75.4 13.1 51 86-136 4-54 (203)
137 3gw4_A Uncharacterized protein 98.6 1.1E-06 3.8E-11 72.8 15.5 156 120-276 4-175 (203)
138 2uy1_A Cleavage stimulation fa 98.6 0.00018 6.2E-09 68.4 32.4 310 88-433 28-380 (493)
139 2vgx_A Chaperone SYCD; alterna 98.6 7.6E-07 2.6E-11 69.8 13.2 97 73-170 20-116 (148)
140 1na0_A Designed protein CTPR3; 98.6 1.8E-06 6E-11 65.0 14.8 95 110-205 11-105 (125)
141 4gco_A Protein STI-1; structur 98.6 1.1E-06 3.6E-11 66.8 13.4 90 149-239 19-108 (126)
142 2vgx_A Chaperone SYCD; alterna 98.6 1.9E-07 6.6E-12 73.2 9.4 97 108-205 21-117 (148)
143 2lni_A Stress-induced-phosphop 98.6 1.4E-06 4.9E-11 66.4 14.2 92 147-239 20-111 (133)
144 2c2l_A CHIP, carboxy terminus 98.6 4.2E-07 1.4E-11 79.9 12.5 97 143-240 4-100 (281)
145 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-06 8.5E-11 63.4 14.7 108 74-182 4-111 (118)
146 2vyi_A SGTA protein; chaperone 98.6 2.2E-06 7.5E-11 65.0 14.2 95 110-205 14-108 (131)
147 2xcb_A PCRH, regulatory protei 98.6 3.6E-07 1.2E-11 71.2 9.6 97 73-170 17-113 (142)
148 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-06 4E-11 79.3 14.4 87 144-231 197-283 (336)
149 1p5q_A FKBP52, FK506-binding p 98.6 1.2E-07 4.1E-12 85.8 7.7 96 177-275 196-292 (336)
150 3upv_A Heat shock protein STI1 98.5 1.6E-06 5.4E-11 65.7 12.8 96 74-170 4-99 (126)
151 2e2e_A Formate-dependent nitri 98.5 9.9E-07 3.4E-11 71.5 12.2 120 120-241 22-144 (177)
152 3sz7_A HSC70 cochaperone (SGT) 98.5 3.1E-06 1.1E-10 67.5 13.7 97 73-170 10-106 (164)
153 3q49_B STIP1 homology and U bo 98.5 7.4E-06 2.5E-10 62.9 14.8 98 72-170 7-104 (137)
154 2kck_A TPR repeat; tetratricop 98.5 2E-06 6.8E-11 63.3 11.0 97 73-170 5-104 (112)
155 2xcb_A PCRH, regulatory protei 98.4 1.2E-06 4.1E-11 68.1 10.1 92 148-240 23-114 (142)
156 3dss_A Geranylgeranyl transfer 98.4 0.00012 4.1E-09 64.9 23.8 188 86-277 41-267 (331)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 2.3E-07 7.9E-12 76.9 6.2 95 110-205 40-150 (198)
158 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-06 1E-10 70.1 12.9 132 73-205 37-185 (198)
159 2dba_A Smooth muscle cell asso 98.4 8.2E-06 2.8E-10 63.5 14.0 111 72-183 26-139 (148)
160 4b4t_Q 26S proteasome regulato 98.4 1.5E-05 5.2E-10 74.7 17.9 196 81-276 11-244 (434)
161 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.4E-10 60.6 13.9 95 110-205 6-100 (126)
162 1elw_A TPR1-domain of HOP; HOP 98.4 1.9E-05 6.4E-10 58.5 14.7 95 110-205 6-100 (118)
163 3dss_A Geranylgeranyl transfer 98.4 0.00018 6E-09 63.8 22.9 217 52-277 45-304 (331)
164 1elr_A TPR2A-domain of HOP; HO 98.3 4.9E-06 1.7E-10 63.1 10.8 96 75-170 5-106 (131)
165 2xev_A YBGF; tetratricopeptide 98.3 1.4E-05 4.7E-10 60.6 13.3 93 77-170 5-103 (129)
166 4gcn_A Protein STI-1; structur 98.3 2.3E-05 8E-10 59.3 14.3 55 113-168 13-67 (127)
167 2kck_A TPR repeat; tetratricop 98.3 8.1E-06 2.8E-10 59.9 11.5 98 143-241 6-106 (112)
168 1elr_A TPR2A-domain of HOP; HO 98.3 5.2E-06 1.8E-10 62.9 10.8 97 109-206 5-108 (131)
169 4b4t_Q 26S proteasome regulato 98.3 3.5E-05 1.2E-09 72.2 18.3 167 251-435 58-244 (434)
170 1hxi_A PEX5, peroxisome target 98.3 6.1E-06 2.1E-10 62.0 10.6 93 77-170 20-112 (121)
171 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.9E-10 60.5 12.7 106 74-180 8-119 (127)
172 3q49_B STIP1 homology and U bo 98.3 1.7E-05 5.9E-10 60.8 13.2 98 107-205 8-105 (137)
173 3sz7_A HSC70 cochaperone (SGT) 98.3 1.3E-05 4.5E-10 63.8 12.4 97 144-241 12-108 (164)
174 2dba_A Smooth muscle cell asso 98.2 4.2E-05 1.4E-09 59.3 14.4 26 214-239 101-126 (148)
175 1hxi_A PEX5, peroxisome target 98.2 1.6E-05 5.6E-10 59.6 10.2 94 111-205 20-113 (121)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.8E-05 9.5E-10 73.4 13.8 88 144-232 318-405 (457)
177 1wao_1 Serine/threonine protei 98.1 5.3E-06 1.8E-10 78.7 8.8 121 80-201 12-134 (477)
178 3k9i_A BH0479 protein; putativ 98.1 4.3E-06 1.5E-10 62.4 6.4 82 88-170 4-88 (117)
179 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.1E-10 62.4 10.5 62 75-136 10-77 (164)
180 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.4E-10 61.9 10.9 57 286-342 92-157 (164)
181 1ihg_A Cyclophilin 40; ppiase 98.1 2.3E-05 7.7E-10 71.7 12.1 138 75-232 224-361 (370)
182 2xev_A YBGF; tetratricopeptide 98.1 7.1E-05 2.4E-09 56.5 12.4 93 113-206 7-105 (129)
183 3rkv_A Putative peptidylprolyl 98.1 4.5E-05 1.5E-09 60.5 11.5 96 74-170 11-124 (162)
184 1wao_1 Serine/threonine protei 98.0 2.9E-05 9.8E-10 73.7 10.3 113 51-167 20-134 (477)
185 1dce_A Protein (RAB geranylger 98.0 0.00049 1.7E-08 66.5 19.0 172 90-265 45-243 (567)
186 2l6j_A TPR repeat-containing p 98.0 9.5E-06 3.2E-10 59.6 5.5 96 73-169 3-104 (111)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.00011 3.8E-09 69.3 14.2 122 144-268 269-405 (457)
188 1ihg_A Cyclophilin 40; ppiase 98.0 0.00011 3.6E-09 67.2 13.5 139 110-270 225-363 (370)
189 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.9E-09 58.1 11.8 99 108-206 11-126 (162)
190 2if4_A ATFKBP42; FKBP-like, al 97.9 3.5E-05 1.2E-09 69.6 9.6 148 74-241 179-328 (338)
191 1dce_A Protein (RAB geranylger 97.9 0.00075 2.6E-08 65.2 19.2 178 48-230 40-244 (567)
192 3k9i_A BH0479 protein; putativ 97.9 2.8E-05 9.7E-10 57.8 7.0 86 121-206 3-90 (117)
193 2hr2_A Hypothetical protein; a 97.9 0.00049 1.7E-08 53.4 13.4 94 75-169 12-128 (159)
194 2kat_A Uncharacterized protein 97.8 9.9E-05 3.4E-09 54.5 9.0 78 56-136 4-81 (115)
195 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00012 4.2E-09 65.9 10.3 145 177-342 179-327 (338)
196 3n71_A Histone lysine methyltr 97.8 0.00018 6.1E-09 67.9 11.5 60 145-204 353-420 (490)
197 1na3_A Designed protein CTPR2; 97.7 0.00027 9.4E-09 49.3 9.8 81 73-154 8-88 (91)
198 3n71_A Histone lysine methyltr 97.7 0.00016 5.3E-09 68.3 10.8 123 83-205 318-463 (490)
199 2hr2_A Hypothetical protein; a 97.7 0.0013 4.4E-08 51.1 13.7 96 110-205 13-130 (159)
200 2kat_A Uncharacterized protein 97.7 0.00031 1.1E-08 51.8 10.0 79 91-170 2-80 (115)
201 1klx_A Cysteine rich protein B 97.7 0.0012 4.2E-08 50.5 13.0 110 89-207 10-127 (138)
202 1klx_A Cysteine rich protein B 97.6 0.0026 8.9E-08 48.6 14.0 77 123-206 10-90 (138)
203 2l6j_A TPR repeat-containing p 97.6 9.7E-05 3.3E-09 54.0 5.5 60 110-170 6-65 (111)
204 1na3_A Designed protein CTPR2; 97.5 0.0011 3.9E-08 46.0 10.3 76 110-186 11-86 (91)
205 1zu2_A Mitochondrial import re 97.5 0.00046 1.6E-08 53.5 8.4 93 53-150 18-131 (158)
206 3ma5_A Tetratricopeptide repea 97.5 0.00064 2.2E-08 48.7 8.7 64 73-136 6-69 (100)
207 3ma5_A Tetratricopeptide repea 97.4 0.00064 2.2E-08 48.7 8.0 63 107-170 6-68 (100)
208 1zu2_A Mitochondrial import re 97.3 0.00063 2.2E-08 52.7 6.9 109 85-220 13-132 (158)
209 3ly7_A Transcriptional activat 97.1 0.016 5.5E-07 51.7 14.6 66 174-241 274-339 (372)
210 3ly7_A Transcriptional activat 97.0 0.03 1E-06 49.9 15.8 143 72-217 192-348 (372)
211 2kc7_A BFR218_protein; tetratr 96.9 0.0024 8.1E-08 45.3 6.9 59 80-138 6-65 (99)
212 3mkq_A Coatomer beta'-subunit; 96.8 0.04 1.4E-06 56.0 17.3 155 117-310 608-763 (814)
213 3mkq_A Coatomer beta'-subunit; 96.8 0.092 3.2E-06 53.3 20.0 103 78-205 633-735 (814)
214 3qww_A SET and MYND domain-con 96.6 0.0057 2E-07 56.7 8.6 83 157-239 312-409 (433)
215 3qwp_A SET and MYND domain-con 96.6 0.029 9.8E-07 52.0 12.8 91 115-205 294-399 (429)
216 3qwp_A SET and MYND domain-con 96.5 0.009 3.1E-07 55.4 9.0 87 154-240 298-399 (429)
217 3qww_A SET and MYND domain-con 96.5 0.01 3.4E-07 55.0 9.1 86 191-276 312-410 (433)
218 3mkq_B Coatomer subunit alpha; 96.5 0.22 7.6E-06 39.1 15.2 101 82-202 13-114 (177)
219 3bee_A Putative YFRE protein; 96.4 0.034 1.2E-06 38.8 9.5 67 72-138 4-73 (93)
220 2kc7_A BFR218_protein; tetratr 96.4 0.014 4.9E-07 41.1 7.6 55 115-170 7-62 (99)
221 2v5f_A Prolyl 4-hydroxylase su 96.2 0.068 2.3E-06 38.2 10.3 65 73-137 4-75 (104)
222 3bee_A Putative YFRE protein; 96.1 0.06 2.1E-06 37.5 9.6 77 369-449 3-83 (93)
223 3mkq_B Coatomer subunit alpha; 95.9 0.44 1.5E-05 37.4 17.3 129 116-274 13-141 (177)
224 3lvg_A Clathrin heavy chain 1; 95.8 1.9E-06 6.7E-11 78.0 -18.3 270 73-393 53-325 (624)
225 1pc2_A Mitochondria fission pr 95.8 0.058 2E-06 41.2 8.8 78 92-170 16-98 (152)
226 2v5f_A Prolyl 4-hydroxylase su 95.8 0.1 3.5E-06 37.2 9.8 65 177-241 5-75 (104)
227 3u64_A Protein TP_0956; tetrat 95.7 0.89 3E-05 38.9 17.1 92 193-287 179-281 (301)
228 1pc2_A Mitochondria fission pr 95.5 0.1 3.4E-06 39.9 9.1 80 126-206 16-100 (152)
229 3lvg_A Clathrin heavy chain 1; 95.5 2.3E-05 7.8E-10 71.2 -12.8 232 73-334 82-324 (624)
230 4b4t_P 26S proteasome regulato 94.9 2.4 8.3E-05 39.3 21.2 90 253-342 142-246 (445)
231 1wy6_A Hypothetical protein ST 94.7 0.91 3.1E-05 33.6 14.6 62 147-208 95-156 (172)
232 1wy6_A Hypothetical protein ST 94.4 1.1 3.7E-05 33.2 16.2 135 189-345 19-156 (172)
233 3u64_A Protein TP_0956; tetrat 94.1 0.22 7.4E-06 42.7 8.5 62 109-170 200-267 (301)
234 1nzn_A CGI-135 protein, fissio 94.1 0.38 1.3E-05 35.3 8.7 79 91-170 18-101 (126)
235 4h7y_A Dual specificity protei 93.7 0.75 2.6E-05 34.8 9.7 50 191-241 74-123 (161)
236 4b4t_P 26S proteasome regulato 93.7 4.4 0.00015 37.5 24.2 260 52-311 31-323 (445)
237 2ff4_A Probable regulatory pro 93.5 0.31 1.1E-05 44.4 9.2 69 111-180 174-248 (388)
238 4fhn_B Nucleoporin NUP120; pro 93.4 6.5 0.00022 41.5 20.1 124 215-341 902-1048(1139)
239 1nzn_A CGI-135 protein, fissio 93.1 1.3 4.3E-05 32.5 9.9 82 124-206 17-103 (126)
240 4h7y_A Dual specificity protei 91.3 3.7 0.00013 31.1 11.5 34 73-106 12-51 (161)
241 2ff4_A Probable regulatory pro 91.2 1.7 5.6E-05 39.6 10.9 77 376-453 175-256 (388)
242 4gns_B Protein CSD3, chitin bi 90.5 1.2 4.1E-05 44.1 9.6 127 77-203 251-397 (754)
243 1v54_E Cytochrome C oxidase po 90.3 1.2 4.1E-05 30.9 6.6 47 90-136 26-73 (109)
244 4gns_B Protein CSD3, chitin bi 90.3 1.8 6.2E-05 42.8 10.7 69 365-435 606-683 (754)
245 1wdy_A 2-5A-dependent ribonucl 88.9 2.2 7.4E-05 36.4 9.4 252 79-348 7-280 (285)
246 4ady_A RPN2, 26S proteasome re 87.7 26 0.0009 35.6 24.7 148 187-341 500-656 (963)
247 1v54_E Cytochrome C oxidase po 87.6 5.4 0.00019 27.7 10.9 70 382-452 19-89 (109)
248 3esl_A Checkpoint serine/threo 86.7 11 0.00037 30.2 11.5 70 385-454 92-162 (202)
249 4a1g_A Mitotic checkpoint seri 86.2 9.4 0.00032 29.0 12.6 99 352-453 47-147 (152)
250 3ffl_A Anaphase-promoting comp 85.9 8.9 0.00031 29.6 9.8 111 290-400 27-150 (167)
251 2y69_E Cytochrome C oxidase su 85.6 3.1 0.0001 30.7 6.6 45 92-136 71-116 (152)
252 3lpz_A GET4 (YOR164C homolog); 85.6 18 0.00062 31.7 22.0 131 75-223 36-178 (336)
253 4ady_A RPN2, 26S proteasome re 85.5 34 0.0012 34.8 22.2 212 149-364 496-721 (963)
254 3ffl_A Anaphase-promoting comp 85.4 5.6 0.00019 30.7 8.5 117 110-239 22-149 (167)
255 3txn_A 26S proteasome regulato 85.3 21 0.00072 32.2 22.2 130 144-275 20-166 (394)
256 1zbp_A Hypothetical protein VP 84.9 9.8 0.00033 32.1 10.4 56 82-137 5-60 (273)
257 3lpz_A GET4 (YOR164C homolog); 84.9 19 0.00066 31.5 24.4 111 180-306 38-159 (336)
258 3o48_A Mitochondria fission 1 84.4 8.3 0.00028 28.4 8.6 22 149-170 84-105 (134)
259 4fhn_B Nucleoporin NUP120; pro 83.8 47 0.0016 35.1 19.9 148 251-424 815-988 (1139)
260 3o48_A Mitochondria fission 1 83.7 8.9 0.0003 28.3 8.5 72 69-142 35-110 (134)
261 2nsz_A Programmed cell death p 83.1 6.5 0.00022 29.0 7.9 78 375-453 10-89 (129)
262 4b4t_R RPN7, 26S proteasome re 83.1 5.9 0.0002 36.5 9.5 95 249-343 132-237 (429)
263 2y69_E Cytochrome C oxidase su 82.9 12 0.00042 27.6 10.9 70 382-452 62-132 (152)
264 1y8m_A FIS1; mitochondria, unk 82.8 13 0.00044 27.8 10.2 67 71-137 36-106 (144)
265 2wvi_A Mitotic checkpoint seri 81.7 16 0.00055 28.1 12.3 67 389-455 77-144 (164)
266 2uwj_G Type III export protein 81.5 11 0.00037 26.1 8.7 88 262-354 20-107 (115)
267 2wpv_A GET4, UPF0363 protein Y 81.2 26 0.0009 30.4 21.0 113 75-201 34-158 (312)
268 2p58_C Putative type III secre 81.0 11 0.00039 26.0 9.5 88 262-354 21-108 (116)
269 4b4t_R RPN7, 26S proteasome re 80.6 34 0.0012 31.3 13.9 100 178-277 132-237 (429)
270 2ion_A PDCD4, programmed cell 79.9 9.1 0.00031 29.2 7.9 79 374-453 11-91 (152)
271 3txn_A 26S proteasome regulato 79.0 37 0.0013 30.7 23.3 166 109-275 20-208 (394)
272 3eiq_C Programmed cell death p 78.1 37 0.0013 30.1 15.4 79 374-453 219-299 (358)
273 3esl_A Checkpoint serine/threo 77.9 22 0.00074 28.5 9.6 54 192-245 94-148 (202)
274 1zbp_A Hypothetical protein VP 77.7 6.1 0.00021 33.3 6.7 53 117-170 6-58 (273)
275 3eiq_C Programmed cell death p 77.0 40 0.0014 29.9 14.2 65 286-350 220-289 (358)
276 2uwj_G Type III export protein 76.9 15 0.00051 25.4 7.1 50 153-207 49-98 (115)
277 2p58_C Putative type III secre 76.8 16 0.00055 25.3 8.0 50 153-207 50-99 (116)
278 1y8m_A FIS1; mitochondria, unk 72.6 28 0.00094 26.1 10.4 67 105-171 36-105 (144)
279 1qsa_A Protein (soluble lytic 72.6 72 0.0025 30.9 34.3 338 67-430 65-436 (618)
280 4aez_C MAD3, mitotic spindle c 71.2 41 0.0014 27.4 13.1 66 389-454 131-197 (223)
281 2zu6_B Programmed cell death p 70.6 52 0.0018 28.5 11.9 195 146-349 6-237 (307)
282 2wpv_A GET4, UPF0363 protein Y 70.0 54 0.0019 28.4 20.1 167 146-341 36-215 (312)
283 2zu6_B Programmed cell death p 69.4 56 0.0019 28.3 14.1 79 374-453 168-248 (307)
284 1wdy_A 2-5A-dependent ribonucl 67.8 19 0.00064 30.3 8.0 186 147-348 6-213 (285)
285 1bpo_A Protein (clathrin); cla 67.6 74 0.0025 29.3 11.6 97 138-235 356-452 (494)
286 3hra_A Ankyrin repeat family p 67.4 13 0.00045 29.4 6.6 16 83-98 11-26 (201)
287 3ltm_A Alpha-REP4; protein eng 66.0 48 0.0017 26.3 17.9 15 109-123 34-48 (211)
288 1bpo_A Protein (clathrin); cla 65.4 85 0.0029 28.9 12.6 113 50-168 342-454 (494)
289 1k1a_A B-cell lymphoma 3-encod 64.0 56 0.0019 26.4 10.8 19 290-308 154-172 (241)
290 4g8k_A 2-5A-dependent ribonucl 62.5 77 0.0026 27.4 12.1 122 220-350 173-302 (337)
291 2ion_A PDCD4, programmed cell 62.4 39 0.0013 25.6 7.8 23 148-170 14-36 (152)
292 2d2s_A Exocyst complex compone 62.3 53 0.0018 27.1 9.2 21 150-170 25-45 (235)
293 3eu9_A Huntingtin-interacting 60.2 31 0.0011 27.9 7.8 18 291-308 182-199 (240)
294 3eu9_A Huntingtin-interacting 58.7 17 0.00057 29.6 5.8 51 383-437 185-237 (240)
295 3aji_A 26S proteasome non-ATPa 58.5 70 0.0024 25.6 9.8 17 292-308 145-161 (231)
296 2wvi_A Mitotic checkpoint seri 58.3 61 0.0021 24.9 9.0 51 231-281 79-129 (164)
297 2qx5_A Nucleoporin NIC96; mRNA 57.3 1.5E+02 0.005 29.0 15.4 23 79-101 157-179 (661)
298 2keb_A DNA polymerase subunit 55.9 46 0.0016 22.8 6.7 59 389-449 26-89 (101)
299 3ltm_A Alpha-REP4; protein eng 55.5 76 0.0026 25.1 19.5 60 282-342 125-184 (211)
300 2rg8_A Programmed cell death p 55.4 29 0.001 26.7 6.1 75 375-452 13-89 (165)
301 4b4t_S RPN3, 26S proteasome re 53.4 1.4E+02 0.0047 28.1 11.1 63 249-311 232-298 (523)
302 2d2s_A Exocyst complex compone 52.9 93 0.0032 25.6 9.1 26 178-203 92-117 (235)
303 2nsz_A Programmed cell death p 52.4 66 0.0022 23.5 9.7 23 148-170 12-34 (129)
304 3ltj_A Alpharep-4; protein eng 49.3 93 0.0032 24.3 18.6 11 112-122 32-42 (201)
305 3jxi_A Vanilloid receptor-rela 48.3 13 0.00043 31.1 3.3 24 118-141 12-35 (260)
306 3l6a_A Eukaryotic translation 45.5 64 0.0022 28.7 7.5 75 375-453 15-94 (364)
307 4aez_C MAD3, mitotic spindle c 45.0 53 0.0018 26.7 6.2 52 194-245 131-183 (223)
308 2f6m_A Suppressor protein STP2 43.4 32 0.0011 21.6 3.6 45 77-121 5-49 (65)
309 3jxi_A Vanilloid receptor-rela 43.4 71 0.0024 26.3 7.4 19 289-307 143-161 (260)
310 1k1a_A B-cell lymphoma 3-encod 43.2 1.3E+02 0.0043 24.2 10.9 85 80-169 12-102 (241)
311 1qsa_A Protein (soluble lytic 42.4 2.4E+02 0.0083 27.2 31.1 55 71-125 99-153 (618)
312 3kea_A K1L; tropism, ANK repea 42.0 49 0.0017 28.0 6.2 9 340-348 214-222 (285)
313 2r9g_A AAA ATPase, central reg 41.3 1.3E+02 0.0046 23.9 9.9 36 190-226 27-62 (204)
314 1n11_A Ankyrin; clathrin, BAND 40.7 1.8E+02 0.006 26.3 10.2 84 80-168 50-135 (437)
315 2fe3_A Peroxide operon regulat 40.7 1E+02 0.0036 22.9 7.1 59 100-158 13-71 (145)
316 2xig_A Ferric uptake regulatio 40.6 1E+02 0.0035 23.1 7.1 60 100-159 18-77 (150)
317 3kae_A CDC27, possible protein 40.5 1.3E+02 0.0044 23.4 7.3 60 76-140 34-94 (242)
318 1ug3_A EIF4GI, eukaryotic prot 40.4 34 0.0012 30.1 4.9 77 376-453 15-92 (339)
319 3aji_A 26S proteasome non-ATPa 39.9 87 0.003 25.0 7.3 19 81-99 10-28 (231)
320 2rfa_A Transient receptor pote 39.4 1.3E+02 0.0044 24.0 8.3 25 255-279 158-182 (232)
321 3bge_A Predicted ATPase; struc 39.3 1.4E+02 0.0049 23.6 8.4 33 190-222 20-52 (201)
322 3v31_A Ankyrin repeat family A 39.0 1.1E+02 0.0038 22.8 7.4 16 84-99 10-25 (167)
323 4a1g_A Mitotic checkpoint seri 38.6 1.3E+02 0.0043 22.8 12.3 49 93-141 84-134 (152)
324 3hra_A Ankyrin repeat family p 38.4 1.4E+02 0.0046 23.1 8.2 56 293-348 113-172 (201)
325 2keb_A DNA polymerase subunit 37.0 1E+02 0.0034 21.2 6.2 31 127-157 28-58 (101)
326 3bu8_A Telomeric repeat-bindin 35.9 1.7E+02 0.0059 23.6 7.6 48 90-137 88-143 (235)
327 3utm_A Tankyrase-1; tankyrase, 34.3 2.2E+02 0.0075 24.3 11.7 14 118-131 31-44 (351)
328 1s1e_A KV channel interacting 32.4 1.9E+02 0.0066 23.1 12.4 114 22-135 19-135 (224)
329 3b7b_A Euchromatic histone-lys 32.4 56 0.0019 26.4 4.9 16 326-341 219-234 (237)
330 2chq_A Replication factor C sm 32.0 2.3E+02 0.008 23.9 15.1 58 110-169 230-292 (319)
331 2jul_A Calsenilin; EF-hand, ca 31.6 2.2E+02 0.0074 23.4 12.3 24 214-237 231-254 (256)
332 3ctd_A Putative ATPase, AAA fa 31.6 2E+02 0.0069 23.1 9.6 63 181-243 36-106 (213)
333 3mkr_B Coatomer subunit alpha; 31.5 2.6E+02 0.0088 24.3 12.2 64 389-454 178-243 (320)
334 2ijq_A Hypothetical protein; s 31.5 1.7E+02 0.006 22.3 8.3 51 86-136 44-103 (161)
335 2pm7_A Protein WEB1, protein t 31.2 2.9E+02 0.01 24.8 10.2 22 377-398 341-362 (399)
336 1mzb_A Ferric uptake regulatio 31.0 1E+02 0.0036 22.5 5.6 45 113-157 22-67 (136)
337 1s6c_A KV4 potassium channel-i 30.9 1.7E+02 0.006 22.1 12.2 63 73-135 37-102 (183)
338 3eyy_A Putative iron uptake re 30.7 1E+02 0.0034 23.0 5.5 34 124-157 33-66 (145)
339 2etb_A Transient receptor pote 30.6 1.3E+02 0.0044 24.5 7.0 18 290-307 140-157 (256)
340 3kea_A K1L; tropism, ANK repea 30.4 2.4E+02 0.0082 23.6 10.5 17 220-236 166-182 (285)
341 3l6a_A Eukaryotic translation 30.3 2.9E+02 0.0099 24.5 13.9 68 77-144 15-84 (364)
342 1ug3_A EIF4GI, eukaryotic prot 30.0 2.8E+02 0.0095 24.2 14.5 25 77-101 14-38 (339)
343 3e3v_A Regulatory protein RECX 29.9 1.9E+02 0.0067 22.4 8.1 48 230-279 51-98 (177)
344 2xig_A Ferric uptake regulatio 29.3 1.8E+02 0.0061 21.7 7.0 45 253-297 31-75 (150)
345 3bu8_A Telomeric repeat-bindin 29.0 2.3E+02 0.0078 22.9 10.9 47 124-170 88-141 (235)
346 3i5p_A Nucleoporin NUP170; hel 29.0 1.8E+02 0.006 27.4 7.9 36 247-282 216-251 (525)
347 2fu4_A Ferric uptake regulatio 28.6 1.2E+02 0.0041 19.6 6.1 38 203-241 8-46 (83)
348 2w57_A Ferric uptake regulatio 28.3 1.2E+02 0.004 22.8 5.6 46 113-158 21-67 (150)
349 2ijq_A Hypothetical protein; s 28.2 2E+02 0.0068 22.0 7.9 54 383-436 43-104 (161)
350 1bd8_A P19INK4D CDK4/6 inhibit 28.0 98 0.0034 22.7 5.3 13 120-132 11-23 (156)
351 2w57_A Ferric uptake regulatio 27.9 1.5E+02 0.0052 22.1 6.2 15 227-241 32-46 (150)
352 2f6m_A Suppressor protein STP2 27.7 1.2E+02 0.004 19.1 5.1 49 374-423 4-52 (65)
353 1n11_A Ankyrin; clathrin, BAND 27.5 3E+02 0.01 24.6 9.5 52 80-132 83-134 (437)
354 4fke_A Aminopeptidase N; zinc 27.2 5.2E+02 0.018 26.4 17.2 87 149-240 692-786 (909)
355 2fe3_A Peroxide operon regulat 26.6 2E+02 0.0067 21.3 7.6 45 253-297 26-70 (145)
356 4ets_A Ferric uptake regulatio 26.5 1.4E+02 0.0049 22.7 5.8 48 251-298 35-84 (162)
357 4b4t_S RPN3, 26S proteasome re 26.4 4.1E+02 0.014 24.9 13.4 62 75-136 232-298 (523)
358 1mzb_A Ferric uptake regulatio 26.3 1.8E+02 0.0062 21.2 6.3 45 253-297 22-67 (136)
359 3ljn_A Hypothetical protein; a 26.2 2.1E+02 0.0072 24.9 7.9 15 294-308 181-195 (364)
360 3ltj_A Alpharep-4; protein eng 25.5 2.3E+02 0.008 21.9 20.1 141 73-227 27-167 (201)
361 3ph0_C ASCG; type III secretio 25.5 1.2E+02 0.004 18.4 3.9 8 55-62 24-31 (61)
362 2dzn_A Probable 26S proteasome 25.3 98 0.0033 24.6 5.1 19 291-309 145-163 (228)
363 2b7e_A PRE-mRNA processing pro 25.2 92 0.0032 19.1 3.5 29 229-258 3-31 (59)
364 1q2z_A ATP-dependent DNA helic 25.0 41 0.0014 24.3 2.3 51 226-279 41-94 (120)
365 1jr3_A DNA polymerase III subu 24.3 3.5E+02 0.012 23.5 10.2 71 69-142 195-279 (373)
366 4gq2_M Nucleoporin NUP120; bet 24.0 6E+02 0.021 26.1 14.5 49 213-262 898-950 (950)
367 4g8k_A 2-5A-dependent ribonucl 23.9 1.9E+02 0.0065 24.8 7.1 14 336-349 316-329 (337)
368 3ljn_A Hypothetical protein; a 23.9 2.4E+02 0.0082 24.5 7.8 18 151-168 89-106 (364)
369 2xai_A ASB-9, ankyrin repeat a 23.8 3E+02 0.01 22.4 10.2 15 294-308 142-156 (261)
370 3eyy_A Putative iron uptake re 23.7 1.7E+02 0.0059 21.7 5.7 43 254-297 24-66 (145)
371 3ygs_P Procaspase 9; apoptosis 23.3 1.8E+02 0.0062 19.8 6.3 34 298-331 52-85 (97)
372 3t8k_A Uncharacterized protein 23.3 2.6E+02 0.0088 21.6 9.2 19 193-211 90-108 (186)
373 3b7b_A Euchromatic histone-lys 23.3 2.8E+02 0.0096 22.0 7.8 211 80-309 14-233 (237)
374 2xai_A ASB-9, ankyrin repeat a 23.2 3.1E+02 0.01 22.4 8.2 15 83-97 9-23 (261)
375 3d9h_A CDNA FLJ77766, highly s 22.9 2.6E+02 0.0089 23.3 7.6 18 81-98 63-80 (285)
376 4ets_A Ferric uptake regulatio 22.8 1.6E+02 0.0056 22.4 5.5 49 111-159 35-85 (162)
377 3mv2_A Coatomer subunit alpha; 22.8 3.8E+02 0.013 23.3 13.7 53 386-438 184-238 (325)
378 2o03_A Probable zinc uptake re 22.6 1.4E+02 0.0047 21.7 4.9 45 378-422 16-60 (131)
379 2yru_A Steroid receptor RNA ac 22.5 2.2E+02 0.0074 20.4 6.1 42 199-240 48-89 (118)
380 3pvs_A Replication-associated 22.5 4.5E+02 0.015 24.0 13.5 37 225-262 268-304 (447)
381 1oyz_A Hypothetical protein YI 22.3 3.3E+02 0.011 22.4 23.2 122 210-342 140-262 (280)
382 2o03_A Probable zinc uptake re 21.7 1.5E+02 0.0052 21.4 5.0 46 253-298 15-60 (131)
383 2pnn_A Transient receptor pote 21.6 3.3E+02 0.011 22.3 7.9 18 290-307 152-169 (273)
384 3mwm_A ZUR, putative metal upt 21.1 1.4E+02 0.0046 22.1 4.6 22 83-104 22-43 (139)
385 1jr3_D DNA polymerase III, del 21.1 3.9E+02 0.013 23.0 8.5 25 119-143 221-245 (343)
386 3r88_A Anthranilate phosphorib 21.0 2.6E+02 0.0091 24.9 7.2 65 143-207 23-89 (377)
387 1wgl_A TOLL-interacting protei 21.0 1.5E+02 0.0052 18.0 5.7 46 26-73 12-57 (59)
388 2crb_A Nuclear receptor bindin 20.5 1.9E+02 0.0064 19.7 4.5 26 374-399 17-42 (97)
389 1sxj_E Activator 1 40 kDa subu 20.5 4E+02 0.014 23.0 8.5 89 52-143 194-298 (354)
390 3f3f_C Nucleoporin NUP85; stru 20.4 3.6E+02 0.012 25.6 8.1 73 157-231 495-568 (570)
391 3pvs_A Replication-associated 20.1 5E+02 0.017 23.7 13.3 55 189-243 267-326 (447)
392 3mwm_A ZUR, putative metal upt 20.1 1.3E+02 0.0043 22.2 4.3 43 379-421 20-62 (139)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-33 Score=277.27 Aligned_cols=405 Identities=9% Similarity=0.002 Sum_probs=311.8
Q ss_pred HHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHH
Q 048269 40 EFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMT 117 (465)
Q Consensus 40 ~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 117 (465)
..+..++..+. ++++.|+.+|+.++. ..|+..++..++.+|.+.|++++|..+|+.+... ..+..+++.++.+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 33444444333 378889999988732 3457788888999999999999999999887543 3567788999999
Q ss_pred HHhcCCHHHHHHHHHHhhh-C--------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269 118 LAEVRELKKMVNFFHIMND-C--------------GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW 182 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (465)
|.+.|++++|+++|+++.. . +.+.+..+|+.++.+|.+.|++++|+++|++|....+.+...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 9999999999999985332 1 234467889999999999999999999999987322333333333
Q ss_pred H--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh
Q 048269 183 L--------------------------------------IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK 224 (465)
Q Consensus 183 l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 224 (465)
+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 45566778888888888888765 5788899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048269 225 INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYK 304 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (465)
.|++++|.++|+++.+.+ |.+..++..++.+|.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 318 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999988763 4477888999999999999999999999888653 4467888888899999999999999
Q ss_pred HHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCCC
Q 048269 305 VVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPDP 370 (465)
Q Consensus 305 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~~ 370 (465)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..+...+...+. ....+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9988865 557788899999999999999999999888653 3467778888777766555 122344
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhH
Q 048269 371 LVNFDTIFVGGLVKAGKSLDAAKYVERVMNR----GVEVP--RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADI 444 (465)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 444 (465)
++.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ .....+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence 6788889999999999999999999988775 66777 5688899999999999999999999988876 234566
Q ss_pred HHHHHHHHhHHh
Q 048269 445 FQRYGKKMATRE 456 (465)
Q Consensus 445 ~~~~~~~~~~~~ 456 (465)
|..++......+
T Consensus 553 ~~~l~~~~~~~g 564 (597)
T 2xpi_A 553 HTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 666665544443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-32 Score=270.04 Aligned_cols=387 Identities=7% Similarity=-0.073 Sum_probs=318.6
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC----------------CCChHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRR----------------LVNDKTFKIA 114 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~~l 114 (465)
++++.|..+|+.+ .. ..++..+++.++.+|.+.|++++|.++|+++.... ..+..+|+.+
T Consensus 131 g~~~~A~~~~~~~-~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 131 GDYARAKCLLTKE-DL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206 (597)
T ss_dssp TCHHHHHHHHHHT-CG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-hc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHH
Confidence 3788999999986 22 25689999999999999999999999999643332 1246789999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH--------------------------------------HHHHHHcC
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK--------------------------------------VVKTLCQR 156 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------ll~~~~~~ 156 (465)
+.+|.+.|++++|+++|+++.+.+ +.+...+.. ++..|.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999998865 223333332 35566788
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
|++++|.++|+++... +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++
T Consensus 286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998732 6889999999999999999999999999998765 3367788999999999999999999999
Q ss_pred HHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CC
Q 048269 237 MMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PD 313 (465)
Q Consensus 237 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~ 313 (465)
.+... .|.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+
T Consensus 364 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 364 DLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99865 45478889999999999999999999999988753 23677899999999999999999999998876 57
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC----------------CCCCCCc--hHHH
Q 048269 314 ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG----------------RKGPDPL--VNFD 375 (465)
Q Consensus 314 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~--~~~~ 375 (465)
..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..+...+...+. ..+..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 7889999999999999999999999998753 3467888888888876666 2256777 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGK 450 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~ 450 (465)
..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..+|.+.|++++|.+.++++.+..-. ....+..++.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~ 592 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDLLKR 592 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHHHHH
Confidence 999999999999999999999999854 336789999999999999999999999999997532 3444444443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.9e-32 Score=259.51 Aligned_cols=204 Identities=11% Similarity=0.071 Sum_probs=174.3
Q ss_pred HHHHHHHHHhhCCC-CC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC---------HH
Q 048269 92 LFWETLQEMGRRRL-VN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL---------VV 160 (465)
Q Consensus 92 ~a~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~ 160 (465)
.+..+.+.+.+.+. .+ ...++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 44555666766666 33 346888999999999999999999999999999999999999999987654 68
Q ss_pred HHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 161 EAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 161 ~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
.|.++|++|. .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048269 240 VKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR 296 (465)
Q Consensus 240 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 296 (465)
+.|+.| |..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999 99999999999999999999999999999999999999999999988753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.4e-31 Score=252.12 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=174.7
Q ss_pred HHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCC---------H
Q 048269 125 KKMVNFFHIMNDCGCEYSL-EMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGD---------L 193 (465)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~---------~ 193 (465)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|. .|+.||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 458889999999999999999999999 9999999999999999987654 6
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
+.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.| |..+|+++|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhc
Q 048269 274 MFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRL 327 (465)
Q Consensus 274 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~ 327 (465)
|.+.|+.||..||+.||.+|++.|+.++|.++|++|.+ |+..||+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987 9999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.6e-26 Score=213.63 Aligned_cols=367 Identities=9% Similarity=-0.020 Sum_probs=313.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++++.|...|..++...|. +...+..+...+...|++++|...++...+.++.+..+|..+...+.+.|++++|+..
T Consensus 13 g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998666655 7888888999999999999999999999998888889999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+.. +-
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 167 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PN 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99998864 55677899999999999999999999999884445567788889999999999999999999998863 33
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII 290 (465)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 290 (465)
+..+|..+...+.+.|++++|.+.|+++... .|.+...|..+...+...|++++|...+++...... .+..++..+.
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 244 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA 244 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHH
Confidence 5788999999999999999999999999876 555778899999999999999999999999887632 3578899999
Q ss_pred HHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCC
Q 048269 291 YGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKG 367 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 367 (465)
..|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|.+.|+++.+.. +.+..
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~----------------- 306 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHAD----------------- 306 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHH-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHH-----------------
Confidence 999999999999999999876 457789999999999999999999999998652 22333
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269 368 PDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQ 446 (465)
Q Consensus 368 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 446 (465)
+|..+...+.+.|++++|.+.++++.+. .| +..++..+...+.+.|++++|...++++.+.. +.....|.
T Consensus 307 ------~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~ 377 (388)
T 1w3b_A 307 ------SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 377 (388)
T ss_dssp ------HHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 3445566679999999999999999873 45 46689999999999999999999999999864 23455565
Q ss_pred HHHHHH
Q 048269 447 RYGKKM 452 (465)
Q Consensus 447 ~~~~~~ 452 (465)
.+|...
T Consensus 378 ~lg~~~ 383 (388)
T 1w3b_A 378 NMGNTL 383 (388)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 666543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.6e-25 Score=209.29 Aligned_cols=361 Identities=11% Similarity=0.008 Sum_probs=301.6
Q ss_pred HhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 048269 27 HSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV 106 (465)
Q Consensus 27 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 106 (465)
...++..|...........+....++.+.|..+++.++...+. +..+|..+...+.+.|++++|.+.|+++.+..+.
T Consensus 23 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 99 (388)
T 1w3b_A 23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence 3344444444334444444444456889999999998666554 8999999999999999999999999999988877
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+..+|..+..++.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.|+++....+.+..+|..+...
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 178 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999865 44566778888999999999999999999985456678999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
+...|++++|...|+++.+.+ +.+...|..+...+...|++++|.+.|++.... .|.+..++..+..+|...|++++
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999864 335788999999999999999999999999876 56578899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
|...|+++.+.+. .+..++..+...+.+.|++++|...|+++.+ .+..++..+...+.+.|++++|...|+++.+.
T Consensus 256 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 256 AIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999998743 3577899999999999999999999999887 67788999999999999999999999999853
Q ss_pred CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhcc
Q 048269 344 GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEE 421 (465)
Q Consensus 344 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 421 (465)
.|+. ..+|..+...|.+.|++++|.+.|+++.+ +.|+ ...|..+...+...|
T Consensus 335 --~p~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 335 --FPEF----------------------AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp --CTTC----------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred --CCCc----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 4432 22344556667999999999999999997 5665 446766666665544
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=7.2e-23 Score=195.12 Aligned_cols=329 Identities=12% Similarity=0.020 Sum_probs=269.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+.+.|++++|+.+|+.+.+..+.+..++..+..++...|++++|+..|+.+.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 788899999999999999999999999998887788999999999999999999999999999875 5678889999999
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCH---HhHHHHHH------------HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNE---IAYGWLIK------------GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK 217 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~------------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 217 (465)
|.+.|++++|.+.|+++....+.+. ..+..+.. .+...|++++|...|+.+.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999999985445555 66666644 4889999999999999998764 447888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH--------
Q 048269 218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI-------- 289 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------- 289 (465)
+..+|.+.|++++|.++|+.+... .|.+..++..+..+|...|++++|...|+++..... .+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 444788999999999999999999999999987632 234444444
Q ss_pred ----HHHHHhcCCHHHHHHHHHHhcC--CC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 048269 290 ----IYGLLARGRLREAYKVVEEIEK--PD-----ISLYHGLIKGLLRLRRAREATQVFREMIKRGCEP-TMHTYIMLLQ 357 (465)
Q Consensus 290 ----i~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~ 357 (465)
...|.+.|++++|...|+++.. |+ ...|..+...+.+.|++++|+..++++.+. .| +...
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~------ 331 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA------ 331 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH------
Confidence 7889999999999999999977 54 447888899999999999999999998865 34 3333
Q ss_pred HhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHH------------Hhhcc---
Q 048269 358 GHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHY------------YSNEE--- 421 (465)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~------------~~~~g--- 421 (465)
|..+..+|...|++++|.+.++++.+ +.|+.. .+..+..+ |...|
T Consensus 332 -----------------~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 332 -----------------LKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp -----------------HHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred -----------------HHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 34455556999999999999999997 567544 55555532 32233
Q ss_pred --chHHHHHHHHHH
Q 048269 422 --GVVMFEEVGKKL 433 (465)
Q Consensus 422 --~~~~a~~~~~~~ 433 (465)
+.+++.+.++++
T Consensus 393 ~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 393 NAKKQEIIKAYRKL 406 (450)
T ss_dssp TCCTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 556677777763
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=9.6e-22 Score=187.31 Aligned_cols=333 Identities=14% Similarity=0.035 Sum_probs=265.7
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 169 (465)
...+...+......++.+..++..++..+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|+..|+++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445556666666666677889999999999999999999999998864 567899999999999999999999999999
Q ss_pred hcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-H---HHHHHH------------HHHHHhcCCHHHHHH
Q 048269 170 SEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-I---DVVDKM------------IETFFKINKDDEAMK 233 (465)
Q Consensus 170 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~l------------i~~~~~~g~~~~A~~ 233 (465)
....+.+..++..+..+|.+.|++++|...|+.+.+.. |+ . ..+..+ ...+.+.|++++|.+
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 84446778999999999999999999999999998863 43 3 555555 445899999999999
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--
Q 048269 234 VFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-- 311 (465)
Q Consensus 234 ~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 311 (465)
.|+.+... .|.+..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|...|+++..
T Consensus 165 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 165 FLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999876 45478899999999999999999999999998763 34688999999999999999999999999877
Q ss_pred C-CHhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHH
Q 048269 312 P-DISLYHGL------------IKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIF 378 (465)
Q Consensus 312 ~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l 378 (465)
| +...+..+ ...|.+.|++++|...|+++.+. .|+...+.. ..|..+
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~------------------~~~~~l 301 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV------------------RSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH------------------HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH------------------HHHHHH
Confidence 4 34444444 78899999999999999999864 455322111 124456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269 379 VGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKK 451 (465)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 451 (465)
...+.+.|++++|++.++++.+. .| +...|..+..+|...|++++|...++++.+..- -....+..++..
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 372 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKA 372 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 77789999999999999999874 45 567999999999999999999999999998642 235556666643
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.1e-22 Score=192.51 Aligned_cols=358 Identities=8% Similarity=-0.043 Sum_probs=293.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++++.|+..|+.++... |+..+|..+..++.+.|++++|...++++.+.++.+..++..+..++.+.|++++|+..
T Consensus 20 g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp SCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 48899999999985544 58999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHhhhCCCCCC--------------------------------------------------------------------
Q 048269 131 FHIMNDCGCEYS-------------------------------------------------------------------- 142 (465)
Q Consensus 131 ~~~~~~~~~~~~-------------------------------------------------------------------- 142 (465)
|+.+.+.+. ++
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999877541 11
Q ss_pred -----------HHHHHHHHHHHHc---CCCHHHHHHHHHHhhc-----C--C-------CCCHHhHHHHHHHHHhcCCHH
Q 048269 143 -----------LEMLNKVVKTLCQ---RKLVVEAKYLILKLSE-----W--I-------KPNEIAYGWLIKGYCDVGDLI 194 (465)
Q Consensus 143 -----------~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~--~-------~~~~~~~~~li~~~~~~g~~~ 194 (465)
...+......+.. .|++++|+.+|+++.. . . +.+..++..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 2333333333443 8999999999999874 2 1 334677888899999999999
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048269 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM 274 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 274 (465)
+|...|+.+.+.. |+...+..+..++...|++++|.+.++.+... .|.+..++..+...+...|++++|...++++
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998874 44888899999999999999999999999865 4547788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269 275 FKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT 351 (465)
Q Consensus 275 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 351 (465)
.+.... +...+..+...+...|++++|...++++.+ .+...+..+...|...|++++|...|+++.+.. |+..
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~- 406 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKLD- 406 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSS-
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hccc-
Confidence 887433 677888899999999999999999998876 456788889999999999999999999987541 1110
Q ss_pred HHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHH
Q 048269 352 YIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK---AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEE 428 (465)
Q Consensus 352 ~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (465)
........|..+...+.. .|++++|.+.++++.+.. ..+..++..+...+.+.|++++|..
T Consensus 407 ---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 407 ---------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp ---------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 000012245566677789 999999999999998742 2356688999999999999999999
Q ss_pred HHHHHHHcC
Q 048269 429 VGKKLREVG 437 (465)
Q Consensus 429 ~~~~~~~~g 437 (465)
.+++..+.+
T Consensus 471 ~~~~a~~~~ 479 (514)
T 2gw1_A 471 LFEESADLA 479 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999985
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=8.4e-21 Score=185.03 Aligned_cols=360 Identities=9% Similarity=-0.019 Sum_probs=282.2
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
++++.|+..|+.++...|. ++..|..+..++.+.|++++|++.|+++.+.++.+..++..+..++...|++++|+..
T Consensus 39 g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4788999999999776655 8999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHhhhCCCC------------------------------------CCHH------------------------------
Q 048269 131 FHIMNDCGCE------------------------------------YSLE------------------------------ 144 (465)
Q Consensus 131 ~~~~~~~~~~------------------------------------~~~~------------------------------ 144 (465)
|+.+....-. |+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence 9644221100 1110
Q ss_pred HHHHHHHHHHcC--------CCHHHHHHHHHHhhcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269 145 MLNKVVKTLCQR--------KLVVEAKYLILKLSEWIKPNE-------IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 145 ~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
....+...+... |++++|..+++++....+.+. .++..+...+...|++++|...|+.+.+. .
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~ 273 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--H 273 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 111222222221 478899999999884444443 35667778888999999999999999986 4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSI 289 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 289 (465)
|+...+..+...+...|++++|.+.++.+... .|.+..++..+...+...|++++|...++++.+... .+...+..+
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 350 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQL 350 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 66888999999999999999999999999876 454788899999999999999999999999988643 256788889
Q ss_pred HHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCC
Q 048269 290 IYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRK 366 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 366 (465)
...|...|++++|...++++.+ .+...+..+...+...|++++|...|+++.+.. |+...
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~--------------- 413 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEK--------------- 413 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSS---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccchh---------------
Confidence 9999999999999999999877 556788899999999999999999999987642 11000
Q ss_pred CCCCchHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 367 GPDPLVNFDTIFVGGLVKA----------GKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 367 ~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
.......+..+...+... |++++|...++++.+. .| +...+..+...+.+.|++++|.+.+++..+
T Consensus 414 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 414 -IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp -CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 000111122334455677 9999999999999974 44 566899999999999999999999999998
Q ss_pred cCC
Q 048269 436 VGL 438 (465)
Q Consensus 436 ~g~ 438 (465)
..-
T Consensus 491 ~~~ 493 (537)
T 3fp2_A 491 LAR 493 (537)
T ss_dssp HC-
T ss_pred hCC
Confidence 853
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-20 Score=181.39 Aligned_cols=352 Identities=10% Similarity=-0.053 Sum_probs=268.6
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+......+.+.|++++|+..|+++.+.+ |+..++..+..++.+.|++++|+..++.+.+.+ +.+..++..+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34567788899999999999999999999877 478899999999999999999999999999875 6678899999999
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCC--------------------------------------------------------
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPN-------------------------------------------------------- 176 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~-------------------------------------------------------- 176 (465)
+...|++++|...|+++....+++
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987222222
Q ss_pred -----------------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCcHHHHHH
Q 048269 177 -----------------------EIAYGWLIKGYCD---VGDLIEASKIWNLMTD-----EGF--------EPSIDVVDK 217 (465)
Q Consensus 177 -----------------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~ 217 (465)
...+..+...+.. .|++++|...|+++.+ ..- +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2222233333333 7888888888888877 211 123566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
+...+...|++++|.+.|+.+... .| +..++..+..++...|++++|...++++..... .+...+..+...|...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIEL--FP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH--CC-CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--Cc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 888888888888888888888766 45 367778888888888888888888888876632 35667778888888888
Q ss_pred CHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHH
Q 048269 298 RLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNF 374 (465)
Q Consensus 298 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 374 (465)
++++|...++++.. .+...+..+...|...|++++|...++++.+. .|+ +...
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------~~~~ 374 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE----------------------APEV 374 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT----------------------CSHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc----------------------CHHH
Confidence 88888888888765 45667777888888888888888888888754 222 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHhh---ccchHHHHHHHHHHHHcCCCCchhHHH
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGV-EVP----RFDYNKFLHYYSN---EEGVVMFEEVGKKLREVGLADLADIFQ 446 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~ 446 (465)
|..+...|...|++++|.+.++++.+..- .++ ...+..+...+.. .|++++|...+++..+..- .....+.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 453 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKI 453 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 55566777999999999999999986321 111 3388899999999 9999999999999998752 2344555
Q ss_pred HHHHHHhHH
Q 048269 447 RYGKKMATR 455 (465)
Q Consensus 447 ~~~~~~~~~ 455 (465)
.++......
T Consensus 454 ~la~~~~~~ 462 (514)
T 2gw1_A 454 GLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555544433
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2e-19 Score=165.62 Aligned_cols=318 Identities=11% Similarity=0.005 Sum_probs=197.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
|+..+..+...+...|++++|+..|+++.+.++.+..++..+...+...|++++|+..|+.+.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456778888889999999999999999988877778888889999999999999999999888764 4467888888888
Q ss_pred HHcCCCHHHHHHHHHHhhcCCC---CCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIK---PNEIAYGWL------------IKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK 217 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 217 (465)
+...|++++|...|++.....+ .+...+..+ ...+...|++++|...++.+.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 9999999999999998874334 355555544 456666677777777777766543 235566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
+..++...|++++|.+.++.+... .|.+..++..+...+...|++++|...+++..+.... +...+..+...-
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~---- 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK---- 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH----
Confidence 667777777777777777766654 3435666666667777777777777777666654221 222221110000
Q ss_pred CHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHH
Q 048269 298 RLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTI 377 (465)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 377 (465)
.......+...+.+.|++++|...++++.+.. |+...+.......
T Consensus 233 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------------------ 277 (359)
T 3ieg_A 233 ---------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKER------------------ 277 (359)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHH------------------
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHH------------------
Confidence 00001112334555555555555555555432 2222111111110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
+...+...|++++|.+.+++..+. .| +..++..+...+...|++++|...+++..+.
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 122345555666666666555542 23 3445555555555556666666666655554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=7.3e-19 Score=161.78 Aligned_cols=300 Identities=13% Similarity=0.063 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
...+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777777788888888887777654 445677777777777777777777777777633355667777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCC
Q 048269 188 CDVGDLIEASKIWNLMTDEGFEP----SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK 263 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~ 263 (465)
...|++++|...|+.+.+. .| +...+..+..... ...+..+...+...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE------------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH------------------------HHHHHHHHHHHHHccC
Confidence 7777777777777777765 23 2333333310000 0001112334444444
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 264 ISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREM 340 (465)
Q Consensus 264 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 340 (465)
+++|..+++++.+.. +.+...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...|++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555444444432 12344444444445555555555555554443 33444555555555556666666666555
Q ss_pred HHcCCCCCH-HHHHHHH-----HHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-----h
Q 048269 341 IKRGCEPTM-HTYIMLL-----QGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-----D 409 (465)
Q Consensus 341 ~~~~~~p~~-~~~~~ll-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~ 409 (465)
.+. .|+. ..+..+. ... ..+...+.+.|++++|.+.++++.+. .|+.. .
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~----------------~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 274 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKL----------------IESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS 274 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHH----------------HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH
Confidence 543 2221 1111110 001 01234568999999999999999984 34432 3
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHHh
Q 048269 410 YNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATRE 456 (465)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 456 (465)
+..+...+...|++++|...+++..+.. ......+..+|......+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 320 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEE 320 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC
Confidence 5567788999999999999999999874 224556666665544433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=2.1e-18 Score=168.08 Aligned_cols=352 Identities=11% Similarity=-0.021 Sum_probs=265.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
....|..+...+.+.|++++|++.|+++.+.++.+..++..+..++.+.|++++|++.|+.+.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 346678888999999999999999999999988889999999999999999999999999999875 5678899999999
Q ss_pred HHcCCCHHHHHHHHHHhh-cCCCCC------------------------------------HH-----------------
Q 048269 153 LCQRKLVVEAKYLILKLS-EWIKPN------------------------------------EI----------------- 178 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~-~~~~~~------------------------------------~~----------------- 178 (465)
+...|++++|+..|+.+. ....++ ..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 999999999999997553 111111 00
Q ss_pred -------------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCc--------HHHHHHHHHHHHhcCCHH
Q 048269 179 -------------AYGWLIKGYCD--------VGDLIEASKIWNLMTDEGFEPS--------IDVVDKMIETFFKINKDD 229 (465)
Q Consensus 179 -------------~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~ 229 (465)
....+...+.. .|++++|..+|+.+.+.. |+ ..++..+...+...|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 11111111111 147888888888887753 33 335677777888889999
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269 230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 309 (465)
+|.+.|+..... .| +..++..+...+...|++++|...++++.+... .+..++..+...+...|++++|...|+++
T Consensus 261 ~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 261 DAQVLLQESINL--HP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHH--CC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999998876 56 577888888889999999999999998887643 36778888889999999999999999988
Q ss_pred cC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcC
Q 048269 310 EK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAG 386 (465)
Q Consensus 310 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 386 (465)
.. .+...+..+...|...|++++|...++++.+.. |+ +...|..+...+...|
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~----------------------~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PT----------------------LPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------CTHHHHHHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----------------------ChHHHHHHHHHHHHhC
Confidence 76 456778888889999999999999999988652 32 2233445566679999
Q ss_pred CHHHHHHHHHHHHhCCC-----CCCHhhHHHHHHHHhhc----------cchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269 387 KSLDAAKYVERVMNRGV-----EVPRFDYNKFLHYYSNE----------EGVVMFEEVGKKLREVGLADLADIFQRYGKK 451 (465)
Q Consensus 387 ~~~~A~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 451 (465)
++++|.+.++++.+..- ......+......+... |++++|...+++..+..- .....+..++..
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 471 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQL 471 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 99999999999876321 11112244455667777 999999999999998753 234556566654
Q ss_pred HhHHh
Q 048269 452 MATRE 456 (465)
Q Consensus 452 ~~~~~ 456 (465)
....+
T Consensus 472 ~~~~g 476 (537)
T 3fp2_A 472 KLQME 476 (537)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 44433
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=4.9e-19 Score=161.05 Aligned_cols=274 Identities=9% Similarity=-0.055 Sum_probs=228.5
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 048269 70 FAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKV 149 (465)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 149 (465)
...+...+..+...+...|++++|.++|+++.+.++.+..++..++..+...|++++|...++.+.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345677788888899999999999999999988887777778888888899999999999999988864 5567788888
Q ss_pred HHHHHcCC-CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269 150 VKTLCQRK-LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228 (465)
Q Consensus 150 l~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 228 (465)
...+...| ++++|.+.|++.....+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 89999999 89999999999885556677889999999999999999999999988764 23456677788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHH
Q 048269 229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG--------IEADNLTLSSIIYGLLARGRLR 300 (465)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~~~~~ 300 (465)
++|.+.+++..+. .|.+..++..+...+...|++++|...++++.+.. .+....++..+...|...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998865 45477889999999999999999999998887631 1334578888999999999999
Q ss_pred HHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 048269 301 EAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTM 349 (465)
Q Consensus 301 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 349 (465)
+|...+++..+ .+...+..+...|...|++++|.+.|++..+ +.|+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 303 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDD 303 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCc
Confidence 99999998876 5667888889999999999999999998874 45643
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.1e-18 Score=156.84 Aligned_cols=300 Identities=10% Similarity=-0.030 Sum_probs=243.1
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL 105 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 105 (465)
+...+...+..++............++++.|+.+|+.++...+. +...+..++..+.+.|++++|...++++.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 87 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 45555555555554444444434446899999999998666654 667788888999999999999999999999888
Q ss_pred CChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 048269 106 VNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLI 184 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li 184 (465)
.+..++..+...+...| ++++|+..|+...+.. +.+...|..+..++...|++++|.+.+++.....+.+...+..+.
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 78889999999999999 9999999999999865 556788999999999999999999999998844455677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCCcchHHHHHHH
Q 048269 185 KGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM-------DDLGLSTYRIVIDW 257 (465)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~~~~~~~~li~~ 257 (465)
..|...|++++|...++...+.. +.+..++..+...+...|++++|.+.+++...... .|....++..+..+
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 99999999999999999998864 44678899999999999999999999999876421 13356789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHH-HhcCCHH
Q 048269 258 MCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGL-LRLRRAR 331 (465)
Q Consensus 258 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~-~~~~~~~ 331 (465)
+...|++++|...+++..+... .+...+..+...|...|++++|...|+++.+ .+...+..+..++ ...|+.+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999988643 3678899999999999999999999999987 4566777777777 3455543
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1e-18 Score=161.70 Aligned_cols=286 Identities=8% Similarity=-0.060 Sum_probs=235.0
Q ss_pred CChhHHHH-HHHHHhhcCCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269 51 LSWRPVYL-FFQYTQKAQPCFA-HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 51 ~~~~~a~~-~f~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
.+.+.|+. .|+.++...+..+ .+...+..+...+.+.|++++|...|+++.+.++.+..++..+..++.+.|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 36677887 8887644333321 145678899999999999999999999999998888899999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHH---------------HHHHHHhcCCH
Q 048269 129 NFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGW---------------LIKGYCDVGDL 193 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---------------li~~~~~~g~~ 193 (465)
..|+.+.+.. +.+..++..+..++...|++++|...++++....+.+...+.. .+..+...|++
T Consensus 119 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 9999999875 5688899999999999999999999999988433444444332 23444488999
Q ss_pred HHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 194 IEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
++|...|+.+.+..... +..++..+...+.+.|++++|.+.|+++... .|.+..++..+...+...|++++|...|+
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998864221 5889999999999999999999999999876 45477899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--C-C-----------HhhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 273 EMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--P-D-----------ISLYHGLIKGLLRLRRAREATQVFR 338 (465)
Q Consensus 273 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~-----------~~~~~~li~~~~~~~~~~~a~~~~~ 338 (465)
++.+.. +.+...+..+..+|.+.|++++|...|+++.. | + ..+|..+..+|...|++++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 998763 34678899999999999999999999999877 2 2 5789999999999999999998877
Q ss_pred HH
Q 048269 339 EM 340 (465)
Q Consensus 339 ~m 340 (465)
+.
T Consensus 355 ~~ 356 (368)
T 1fch_A 355 RD 356 (368)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.5e-18 Score=160.36 Aligned_cols=263 Identities=8% Similarity=-0.059 Sum_probs=220.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+.+.|++++|+..|+++.+..+.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456689999999999999999999999999888888999999999999999999999999999875 5678899999999
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCH----------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNE----------IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE-PSIDVVDKMIET 221 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 221 (465)
|...|++++|+..|+++....+.+. ..+..+...+...|++++|...|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999872212222 23344588899999999999999999986422 168899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048269 222 FFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLRE 301 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 301 (465)
+.+.|++++|.+.|++..+. .|.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999876 45478899999999999999999999999998863 2358889999999999999999
Q ss_pred HHHHHHHhcC--CC-------------HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 302 AYKVVEEIEK--PD-------------ISLYHGLIKGLLRLRRAREATQVFRE 339 (465)
Q Consensus 302 a~~~~~~~~~--~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (465)
|...|+++.+ |+ ...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999876 22 67789999999999999988877654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=2.6e-18 Score=158.92 Aligned_cols=285 Identities=8% Similarity=-0.026 Sum_probs=191.9
Q ss_pred cCCHHHHHH-HHHHhhhCCC-CC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 048269 121 VRELKKMVN-FFHIMNDCGC-EY--SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEA 196 (465)
Q Consensus 121 ~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a 196 (465)
.|++++|++ .|+....... .| +...+..+...+.+.|++++|...|+++....+.+..++..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 356666666 6655443211 01 2344556666666777777777777776644455666677777777777777777
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHH---------------HHHHHHhc
Q 048269 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI---------------VIDWMCKR 261 (465)
Q Consensus 197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~---------------li~~~~~~ 261 (465)
...|+.+.+.. +.+..++..+..++...|++++|.+.++.+.... |.+...+.. .+..+...
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777766653 2356667777777777777777777777776542 212222221 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 048269 262 GKISQAYTMLEEMFKRGIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVF 337 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 337 (465)
|++++|...++++.+..... +..++..+...|...|++++|...|+++.. .+...|..+...+...|++++|...|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999998888764322 577888888889999999999999988776 45678888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------
Q 048269 338 REMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP----------- 406 (465)
Q Consensus 338 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------- 406 (465)
+++.+. .|+. ...|..+...|.+.|++++|.+.|+++.+. .|+
T Consensus 275 ~~al~~--~~~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 275 RRALEL--QPGY----------------------IRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHH--CTTC----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCC
T ss_pred HHHHHh--CCCc----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccch
Confidence 998764 3332 223444556678999999999999988763 222
Q ss_pred -HhhHHHHHHHHhhccchHHHHHHHHHHH
Q 048269 407 -RFDYNKFLHYYSNEEGVVMFEEVGKKLR 434 (465)
Q Consensus 407 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (465)
..+|..+..++...|+.++|..++++-.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 5688999999999999999988876433
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1e-17 Score=152.05 Aligned_cols=264 Identities=6% Similarity=-0.093 Sum_probs=222.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|...|+.+.+.. +.+..++..+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 445677888899999999999999999998887788899999999999999999999999998865 5678889999999
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWL--------------IK-GYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK 217 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 217 (465)
+...|++++|.+.++++....+.+...+..+ .. .+...|++++|...++++.+.. +.+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 9999999999999999884334444444444 33 3778899999999999998864 347888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 218 MIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
+...+.+.|++++|.+.++++.+. .|.+..++..+...+...|++++|...++++.+.. +.+...+..+...|...|
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999876 45477889999999999999999999999988764 336788899999999999
Q ss_pred CHHHHHHHHHHhcC--CC-------------HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 298 RLREAYKVVEEIEK--PD-------------ISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 298 ~~~~a~~~~~~~~~--~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
++++|...++++.. |+ ...|..+..++.+.|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999998877 44 6788889999999999999999887554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=6.4e-15 Score=141.62 Aligned_cols=339 Identities=10% Similarity=-0.013 Sum_probs=247.8
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----c
Q 048269 50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGK----SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----V 121 (465)
Q Consensus 50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 121 (465)
..+.+.|+..|+.+. .. | ++..+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~-~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAA-EQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHH-HT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHH-HC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCC
Confidence 347778888888873 22 3 67777778888877 788888888888877765 44566667777777 6
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCH
Q 048269 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDL 193 (465)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~ 193 (465)
+++++|+..|+...+.| +...+..+...|.. .++.++|++.|++.... .+...+..|...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 78888888888877754 55666677777766 67788888888877621 356777777777777 7888
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChH
Q 048269 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKIS 265 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~ 265 (465)
++|.+.|+...+.| +...+..+...|.. .+++++|.+.|+...+.+ +...+..+...|.. .++.+
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHH
Confidence 88888888887764 55666677777765 678888888888777653 44566666777776 77888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcC---CHHHHHHH
Q 048269 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLAR-----GRLREAYKVVEEIEK-PDISLYHGLIKGLLRLR---RAREATQV 336 (465)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~---~~~~a~~~ 336 (465)
+|..+|++..+.| +...+..+...|... ++.++|...|++..+ .+...+..+...|...| ++++|.+.
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 8888888877654 455666677777766 788888888887766 55666666777776655 67788888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 048269 337 FREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK----AGKSLDAAKYVERVMNRGVEVPRFDYNK 412 (465)
Q Consensus 337 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (465)
|++..+.| +. ..+..|...|.. .+++++|.+.|++..+.| +...+..
T Consensus 354 ~~~a~~~~---~~-----------------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 354 FRKAAAKG---EK-----------------------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHTT---CH-----------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHCC---CH-----------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 88877653 22 233445555666 799999999999999865 4667888
Q ss_pred HHHHHhh----ccchHHHHHHHHHHHHcCCC
Q 048269 413 FLHYYSN----EEGVVMFEEVGKKLREVGLA 439 (465)
Q Consensus 413 ll~~~~~----~g~~~~a~~~~~~~~~~g~~ 439 (465)
|...|.. .++.++|...+++..+.|..
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 8888887 79999999999999998743
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=5.6e-18 Score=156.55 Aligned_cols=262 Identities=8% Similarity=-0.013 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF 223 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 223 (465)
..+..+...+.+.|++++|+.+|+++....+.+..++..+...|...|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455566666666666666666666663335556666666666666677777777766666542 234566666667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCc----------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 048269 224 KINKDDEAMKVFQMMRVKRMDDLGL----------STYRIVIDWMCKRGKISQAYTMLEEMFKRGIE-ADNLTLSSIIYG 292 (465)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~ 292 (465)
..|++++|.+.|+++.+. .|.+. ..+..+...+...|++++|..+++++.+.... ++..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777666654 22122 22334467777888888888888887776322 157777888888
Q ss_pred HHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCC
Q 048269 293 LLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPD 369 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 369 (465)
|...|++++|...|+++.+ .+..+|..+..+|...|++++|...|+++.+. .|+.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-------------------- 280 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGF-------------------- 280 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc--------------------
Confidence 8888888888888888766 45677888888888888888888888888764 3432
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC--------CCHhhHHHHHHHHhhccchHHHHHHHHH
Q 048269 370 PLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG---VE--------VPRFDYNKFLHYYSNEEGVVMFEEVGKK 432 (465)
Q Consensus 370 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (465)
...|..+...|.+.|++++|.+.|+++.+.. .. .+..+|..+..++...|+.+.+..+.++
T Consensus 281 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 281 --IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 2233445556688899999999998887621 00 0256788888888888988887776654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=5.5e-14 Score=135.10 Aligned_cols=344 Identities=8% Similarity=0.023 Sum_probs=281.1
Q ss_pred HHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHH
Q 048269 55 PVYLFFQYTQKAQPCFAHNSITFNRMVDIIGK----SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----VRELKK 126 (465)
Q Consensus 55 ~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 126 (465)
.++..+..+ .+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++
T Consensus 25 ~~~~~~~~~--a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQK--AESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 345556654 3344 88999999999988 899999999999998875 56678888999998 899999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 048269 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASK 198 (465)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 198 (465)
|+..|+...+.| +...+..|...|.. .+++++|+..|++... .-+...+..|...|.. .+++++|.+
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998865 66777788888888 7899999999999873 1367788888888887 789999999
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChHHHHHH
Q 048269 199 IWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTM 270 (465)
Q Consensus 199 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~ 270 (465)
.|++..+.| +...+..+...|.. .+++++|.+.|+...+.+ +...+..+...|.. .+++++|..+
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999999875 67888889999888 899999999999988764 55678888888886 7899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 048269 271 LEEMFKRGIEADNLTLSSIIYGLLA----RGRLREAYKVVEEIEK-PDISLYHGLIKGLLRL-----RRAREATQVFREM 340 (465)
Q Consensus 271 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m 340 (465)
|++..+.| +...+..+...|.. .++.++|...|++..+ .+...+..+...|... +++++|...|++.
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 99998775 45677777778887 8999999999999887 6777788888888887 8999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 048269 341 IKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAG---KSLDAAKYVERVMNRGVEVPRFDYNKFLHYY 417 (465)
Q Consensus 341 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 417 (465)
.+.|. ...+ ..+...|...| ++++|+++|++..+.| +...+..|...|
T Consensus 323 ~~~~~---~~a~-----------------------~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 323 AEQGD---ATAQ-----------------------ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHTTC---HHHH-----------------------HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HhcCC---HHHH-----------------------HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 87652 2222 22334445545 8899999999999863 567888888888
Q ss_pred hh----ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269 418 SN----EEGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452 (465)
Q Consensus 418 ~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 452 (465)
.. .++.++|...+++..+.|. ...+..+|.+.
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~~---~~a~~~Lg~~y 409 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQGL---SAAQVQLGEIY 409 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 88 7999999999999999873 44555555544
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=175.62 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh----cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLS----EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 219 (465)
.+||++|++|++.|++++|.++|++|. .|..||+.|||+||++||+.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554432 2445555555555555555555555555555555555555555555555
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048269 220 ETFFKINK-DDEAMKVFQMMRVKRMDDLGLSTYRIVIDW 257 (465)
Q Consensus 220 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 257 (465)
.++++.|+ .++|.++|++|...|+.| |..+|+.++.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccCh
Confidence 55555544 244455555555555555 55555544443
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=175.59 Aligned_cols=150 Identities=11% Similarity=0.133 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMND---CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWL 183 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~l 183 (465)
..||+++|.+|++.|++++|.++|+.|.+ .|+.||..+||+||++|++.|++++|.++|++|. .|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35899999999999999999999988764 5899999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CCcchHHHHHHH
Q 048269 184 IKGYCDVGD-LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD-----LGLSTYRIVIDW 257 (465)
Q Consensus 184 i~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~~li~~ 257 (465)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++.+ ..+..| +...+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999998766554 444444444 233333 125566667777
Q ss_pred HHhcC
Q 048269 258 MCKRG 262 (465)
Q Consensus 258 ~~~~~ 262 (465)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 77655
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=9.7e-17 Score=145.57 Aligned_cols=256 Identities=8% Similarity=-0.092 Sum_probs=216.2
Q ss_pred CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 048269 49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMV 128 (465)
Q Consensus 49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 128 (465)
..++++.|..+|+.++...+. +...+..+...+.+.|++++|.+.++++.+.++.+..++..+...+...|++++|+
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345889999999998666654 88999999999999999999999999999988878889999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHH--------------HH-HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCH
Q 048269 129 NFFHIMNDCGCEYSLEMLNKV--------------VK-TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDL 193 (465)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~ 193 (465)
+.++.+.+.. +.+...+..+ .. .+...|++++|...++++....+.+..++..+...+...|++
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 110 ASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence 9999998864 2233333333 22 377789999999999998844566889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 194 IEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
++|...++.+.+.. +.+..++..+...+...|++++|.+.++++.+. .|.+..++..+..+|...|++++|...+++
T Consensus 189 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 189 DSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998864 346788999999999999999999999999876 454778899999999999999999999999
Q ss_pred HHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 274 MFKRGIEA-----------DNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 274 m~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
+.+..... +...+..+..++.+.|+.++|..++++...
T Consensus 266 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88753321 467888999999999999999999876543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.5e-17 Score=151.39 Aligned_cols=293 Identities=10% Similarity=0.063 Sum_probs=136.1
Q ss_pred HHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 42 FLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 42 ~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
+..+|..+ .+.+.|.++++.. +++.+|..+..++.+.|++++|++.|.+. ++..+|..++.++...
T Consensus 9 ~~~ll~~~-~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 9 VQVLIEHI-GNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHc-cCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhC
Confidence 34445333 3578899998884 34569999999999999999999999653 3566899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 122 RELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWN 201 (465)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 201 (465)
|++++|+.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988777664 5667888999999999999999888775 4777899999999999999999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048269 202 LMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA 281 (465)
Q Consensus 202 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 281 (465)
.+ ..|..++.++.+.|++++|.+.+..+ . ++.+|..++.+|...|+++.|...... +..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------N-STRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------C-CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 76 36899999999999999999999987 2 778999999999999999999655443 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048269 282 DNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQG 358 (465)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 358 (465)
.+.-...++..|.+.|++++|..+++.... .....|+-+.-.|++- ++++..+.++.... +.+ ..-++++
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~---~in---i~k~~~~ 278 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRA 278 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHST---TSC---HHHHHHH
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---Hhc---CcHHHHH
Confidence 444466788999999999999999999887 4566677777777765 34444444433321 112 2346666
Q ss_pred hhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 048269 359 HLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKY 394 (465)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 394 (465)
| -+...|..++..|...++++.|...
T Consensus 279 ~----------~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 279 A----------EQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp H----------HTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHHhhchHHHHHHH
Confidence 6 3567899999999999999999875
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.5e-14 Score=138.91 Aligned_cols=354 Identities=12% Similarity=0.064 Sum_probs=214.0
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHH-HhcCCHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTL-AEVRELKKMVN 129 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~ 129 (465)
++.+.|..+|+.++...|. +...|..++..+.+.|++++|..+|+++....+ +...|...+... ...|+.+.|.+
T Consensus 26 ~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred CCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHH
Confidence 4677888888887544443 777888888888888888888888888877654 555666665433 34466655544
Q ss_pred ----HHHHhhh-CCCC-CCHHHHHHHHHHHHc---------CCCHHHHHHHHHHhhcCCCCC--HHhHHHHHHHHH----
Q 048269 130 ----FFHIMND-CGCE-YSLEMLNKVVKTLCQ---------RKLVVEAKYLILKLSEWIKPN--EIAYGWLIKGYC---- 188 (465)
Q Consensus 130 ----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~---- 188 (465)
+|+.... .|.. ++...|...+....+ .|+++.|..+|++... .+.+ ...|........
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhch
Confidence 6665544 2433 345666666665544 5778888888888774 2211 223333222111
Q ss_pred ---------hcCCHHHHHHHHHHHH------HCC---CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHH
Q 048269 189 ---------DVGDLIEASKIWNLMT------DEG---FEPS--------IDVVDKMIETFFKI----NKD----DEAMKV 234 (465)
Q Consensus 189 ---------~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~ 234 (465)
+.+++..|..++..+. +.. ++|+ ...|...+...... ++. +.|..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 1234555666555522 111 2333 23455544333221 222 366677
Q ss_pred HHHHHHcCCCCCCcchHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048269 235 FQMMRVKRMDDLGLSTYRIVIDWMCK-------RGKIS-------QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLR 300 (465)
Q Consensus 235 ~~~m~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 300 (465)
|++.... .|.+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+..++..+.+.|+++
T Consensus 261 y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 261 YEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 7777765 44466777777777765 67776 78888888775222335677777788888888888
Q ss_pred HHHHHHHHhcC--CC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269 301 EAYKVVEEIEK--PD-I-SLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT-MHTYIMLLQGHLGKRGRKGPDPLVNFD 375 (465)
Q Consensus 301 ~a~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~ 375 (465)
+|..+|+++.+ |+ . ..|..++..+.+.|++++|.++|++..+. .|+ ...+....
T Consensus 339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a------------------- 397 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA------------------- 397 (530)
T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH-------------------
T ss_pred HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH-------------------
Confidence 88888887776 33 2 46777777777788888888888888754 332 11111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
++ .+...|++++|..+|++..+. .| +...|..++..+.+.|+.++|..++++..+.+
T Consensus 398 --~~-~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 398 --LM-EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp --HH-HHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred --HH-HHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 11 122466677777777766653 24 34566666666666677777777777766653
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=9.2e-15 Score=139.88 Aligned_cols=343 Identities=11% Similarity=-0.064 Sum_probs=230.6
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR---------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC---- 137 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 137 (465)
......||.+..++...|++++|++.|++..+. .+....+|+.+...|...|++++|+..+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 345678999999999999999999999887542 2234568899999999999999999999887652
Q ss_pred -C--CCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 048269 138 -G--CEYSLEMLNKVVKTLCQ--RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY---CDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 138 -~--~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
+ ......++.....++.. .+++++|+..|++.....|.++..+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 11234566655555544 45799999999998743355666666655553 45577788999998887753 2
Q ss_pred CcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048269 210 PSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT 285 (465)
Q Consensus 210 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 285 (465)
.+..++..+...+.. .|++++|.+.+++.... .|.+..++..+...|...|++++|...+++..+... -+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 355666666555544 46788999999988766 454778899999999999999999999999887643 25666
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 286 LSSIIYGLLAR-------------------GRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 286 ~~~li~~~~~~-------------------~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
+..+..+|... +..+.|...++.... .+...+..+...|...|++++|.+.|++.++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 66666555322 235667777776655 55667888999999999999999999999865
Q ss_pred CCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------
Q 048269 344 GCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRG--------------------- 402 (465)
Q Consensus 344 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------------- 402 (465)
. |+......+...+ -.-.+...|++++|+..|++..+..
T Consensus 364 ~--~~~~~~~~~~~~~------------------~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 364 E--LTPVAKQLLHLRY------------------GNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL 423 (472)
T ss_dssp C--CCHHHHHHHHHHH------------------HHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred C--CCChHHHHHHHHH------------------HHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 4 4333221111111 0012346788888888887776521
Q ss_pred -CCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 403 -VEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 403 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
..| +..+|..+...+...|++++|.+.+++.++.|
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 123 45588889999999999999999999999886
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=7.3e-16 Score=137.02 Aligned_cols=253 Identities=13% Similarity=0.048 Sum_probs=192.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
++.....|++..|+..++.....++.+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 445567788999988887765544422 34556678889999999888876644 2 366777888888888888999
Q ss_pred HHHHHHHHHhh-cC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 160 VEAKYLILKLS-EW-IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 160 ~~a~~~~~~m~-~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
++|++.++++. .+ .+.+...+..+...+...|++++|++.++. +.+...+..++..+.+.|++++|.+.|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999887 44 344666777777888899999999998887 45778888888999999999999999999
Q ss_pred HHHcCCCCCCcchHHH----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--
Q 048269 238 MRVKRMDDLGLSTYRI----VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-- 311 (465)
Q Consensus 238 m~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 311 (465)
+.+. .| +. +... .+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++..
T Consensus 156 ~~~~--~p-~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQ--DE-DA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHH--CT-TC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhh--Cc-Cc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8876 34 32 2222 223344558899999999998877 345788888888899999999999999998776
Q ss_pred -CCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHH
Q 048269 312 -PDISLYHGLIKGLLRLRRARE-ATQVFREMIKRGCEPTMH 350 (465)
Q Consensus 312 -~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~ 350 (465)
.+..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 567788888888888888865 56888888754 45543
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.2e-15 Score=135.60 Aligned_cols=270 Identities=12% Similarity=0.089 Sum_probs=201.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSL--EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
++.....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...|+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence 34556679999999998877654 3443 4556678899999999999876644 246778888999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269 193 LIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTML 271 (465)
Q Consensus 193 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 271 (465)
.++|++.++++...+..| +...+..+...+...|++++|++.++. |.+...+..++..+.+.|++++|.+.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998876545 566677778899999999999999986 337888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 272 EEMFKRGIEADNLTL---SSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345 (465)
Q Consensus 272 ~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 345 (465)
+++.+.. |+.... ...+..+...|++++|..+|+++.+ .+...++.+..++.+.|++++|...|++.++.
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-- 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-- 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 9998774 443211 2233444556889999999998877 56778888899999999999999999998865
Q ss_pred CCC-HHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269 346 EPT-MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLD-AAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV 423 (465)
Q Consensus 346 ~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (465)
.|+ ..++ ..++..+...|+.++ +.++++++.+ +.|+.... .....+.+.+
T Consensus 230 ~p~~~~~l-----------------------~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~---~d~~~~~~~f 281 (291)
T 3mkr_A 230 DSGHPETL-----------------------INLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI---KEYRAKENDF 281 (291)
T ss_dssp CTTCHHHH-----------------------HHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH---HHHHHHHHHH
T ss_pred CCCCHHHH-----------------------HHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH---HHHHHHHHHH
Confidence 343 3333 334444577888865 5688888887 45665432 2334555555
Q ss_pred HHHHH
Q 048269 424 VMFEE 428 (465)
Q Consensus 424 ~~a~~ 428 (465)
+++..
T Consensus 282 d~~~~ 286 (291)
T 3mkr_A 282 DRLVL 286 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.1e-16 Score=145.80 Aligned_cols=248 Identities=13% Similarity=0.075 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+.+.|.+.|..+ +|...|..++.++...|++++|+..++...+ ..+++.+.+.++.+|.+.|+++++.+++
T Consensus 47 ~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~ 117 (449)
T 1b89_A 47 MVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFI 117 (449)
T ss_dssp -----------------------------------------------------------------------CHHHHTTTT
T ss_pred CHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHH
Confidence 678899998764 4888999999999999999999997776655 4556778999999999999999998887
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 211 (465)
+ .|+..+|+.+...|...|.+++|..+|..+ ..|..|+.++.+.|++++|.+.+.++ .+
T Consensus 118 ~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~ 176 (449)
T 1b89_A 118 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NS 176 (449)
T ss_dssp T-------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH------TC
T ss_pred c-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc------CC
Confidence 4 377789999999999999999999999988 37999999999999999999999998 27
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048269 212 IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIY 291 (465)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 291 (465)
+.+|..++.+|+..|+++.|......+ .. .+.-...++..|.+.|.+++|..+++...... +-....|+.+.-
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~-~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~i 249 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VV-HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 249 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTT-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHH-----Hh-CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHH
Confidence 899999999999999999997666542 22 44446678999999999999999999988664 446777887777
Q ss_pred HHHhc--CCHHHHHHHHHHhcC--------CCHhhHHHHHHHHHhcCCHHHHHHH
Q 048269 292 GLLAR--GRLREAYKVVEEIEK--------PDISLYHGLIKGLLRLRRAREATQV 336 (465)
Q Consensus 292 ~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~ 336 (465)
+|++- +++.+..+.|..-.. -+...|..+...|.+.++++.|...
T Consensus 250 l~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 250 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 77754 556666666654443 3577899999999999999998874
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.1e-13 Score=134.52 Aligned_cols=401 Identities=10% Similarity=0.028 Sum_probs=272.6
Q ss_pred CCCChhHHHHHHHHHhhcCCCCchh----HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHh
Q 048269 1 APVDPGHLVRVCTILYQQQYSPESR----LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSIT 76 (465)
Q Consensus 1 ~p~~~~~~~~~~~~l~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~ 76 (465)
.|.+.+.-..+... .+.+ .... ++..+...|..........-+..-.++.+.|..+|+.++... |+...
T Consensus 9 ~P~~~~~w~~l~~~-~~~~--~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----p~~~l 81 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQ--PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----LHIDL 81 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSS--CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----CCHHH
T ss_pred CCCCHHHHHHHHHH-HHhC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CChHH
Confidence 47777777777775 3333 2222 444555554443322222222222358899999999984332 57788
Q ss_pred HHHHHHHH-HhcCChhHHHH----HHHHHhhC-C--CCChHHHHHHHHHHHh---------cCCHHHHHHHHHHhhhCCC
Q 048269 77 FNRMVDII-GKSRNIDLFWE----TLQEMGRR-R--LVNDKTFKIALMTLAE---------VRELKKMVNFFHIMNDCGC 139 (465)
Q Consensus 77 ~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~--~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~ 139 (465)
|...+... ...|+.+.|.+ +|+..... | +.+...|...+....+ .|+++.|..+|++..+...
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 88888644 45688877665 77766542 3 3466788888776655 7899999999999988321
Q ss_pred CCCHHHHHHHHHHH-------------HcCCCHHHHHHHHHHhh------c----CCCCC--------HHhHHHHHHHHH
Q 048269 140 EYSLEMLNKVVKTL-------------CQRKLVVEAKYLILKLS------E----WIKPN--------EIAYGWLIKGYC 188 (465)
Q Consensus 140 ~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~------~----~~~~~--------~~~~~~li~~~~ 188 (465)
......|....... ...+++..|..++.++. . .++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123443322211 13456777877777631 1 13444 245555554333
Q ss_pred hc----CCH----HHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCC
Q 048269 189 DV----GDL----IEASKIWNLMTDEGFEPSIDVVDKMIETFFK-------INKDD-------EAMKVFQMMRVKRMDDL 246 (465)
Q Consensus 189 ~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~ 246 (465)
.. ++. +.+..+|++..... +-+...|..++..+.+ .|+++ +|.++|+..... +.|.
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~ 319 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK 319 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc
Confidence 22 232 47788899888752 3468888888888876 68987 899999998752 3565
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-HhhHHHHH
Q 048269 247 GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD-N-LTLSSIIYGLLARGRLREAYKVVEEIEK--PD-ISLYHGLI 321 (465)
Q Consensus 247 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li 321 (465)
+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+ |+ ...|....
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 7889999999999999999999999999986 443 3 5788888889999999999999999987 22 22222222
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 322 K-GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 322 ~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
. .+...|+.++|..+|++.++. .|+. +..|..++..+.+.|+.++|..+|++...
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~--~p~~----------------------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKK--YGDI----------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH--HTTC----------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHH--CCCC----------------------HHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 2 233689999999999998865 3432 22344455556889999999999999998
Q ss_pred CC-CCCC--HhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 401 RG-VEVP--RFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 401 ~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
.+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 2332 337888888888899999999999998876
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=6.7e-14 Score=142.05 Aligned_cols=349 Identities=10% Similarity=0.014 Sum_probs=259.1
Q ss_pred CCCCCHHHHHHHHhcCC--CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHH
Q 048269 34 NFNLTHEFFLQICNNFP--LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTF 111 (465)
Q Consensus 34 ~~~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 111 (465)
+...+|+.+....+.+. ..+..|+++++.++.....|.-+...-+.++.+..+. +..+..+..+...... .
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~ 1052 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------A 1052 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------H
Confidence 44556666655555443 3788888998888433333555677777777777777 5566666666654221 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269 112 KIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG 191 (465)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 191 (465)
..+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCC
Confidence 447788888999999999998853 12222233332 6788999999998774 5778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269 192 DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTML 271 (465)
Q Consensus 192 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 271 (465)
++++|++.|.+. -|...|..++.+|.+.|++++|.+.+....+.. + ++...+.++.+|++.++++....+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH
Confidence 999999999664 478888999999999999999999999877654 3 4445556999999999988644443
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048269 272 EEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHT 351 (465)
Q Consensus 272 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 351 (465)
. .++...+..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 2 345667778999999999999999999985 58999999999999999999999987 34577
Q ss_pred HHHHHHHhhcccC-------CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhc--c
Q 048269 352 YIMLLQGHLGKRG-------RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNE--E 421 (465)
Q Consensus 352 ~~~ll~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~--g 421 (465)
|..+-.+|...+. ..++..++..+..++..|.+.|.+++|+.+++.... +.+. ...|+-|...+.+. +
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHH
Confidence 7666666644444 234566788889999999999999999999988874 4443 33676666666553 4
Q ss_pred chHHHHHHHH
Q 048269 422 GVVMFEEVGK 431 (465)
Q Consensus 422 ~~~~a~~~~~ 431 (465)
+..++.+++.
T Consensus 1331 klmEhlk~f~ 1340 (1630)
T 1xi4_A 1331 KMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=8.6e-16 Score=130.49 Aligned_cols=200 Identities=8% Similarity=-0.068 Sum_probs=151.0
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
++++..+..+...+.+.|++++|...|++..+.++.+..++..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45777888888999999999999999999998888888889999999999999999999999988865 55677888888
Q ss_pred HHHHcC-----------CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHH
Q 048269 151 KTLCQR-----------KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMI 219 (465)
Q Consensus 151 ~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 219 (465)
.++... |++++|+..|++.....+.+...+..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888888 888888888888774445667778888888888888888888888887776 5777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 220 ETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
.++...|++++|.+.|+...+. .|.+...+..+...+...|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888887765 45467777778888888888888888777654
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=7.3e-15 Score=140.58 Aligned_cols=360 Identities=8% Similarity=-0.086 Sum_probs=237.2
Q ss_pred HHHhcCCCChhHHHHHHHHHhhc------CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C---CCChH
Q 048269 44 QICNNFPLSWRPVYLFFQYTQKA------QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR-----R---LVNDK 109 (465)
Q Consensus 44 ~~l~~~~~~~~~a~~~f~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~ 109 (465)
..+....++.+.|+..|+.++.. ...-.....+|+.+..+|...|++++|...+++..+. + .....
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34444556889999999887432 1112235788999999999999999999999887542 1 12456
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHH
Q 048269 110 TFKIALMTLAEV--RELKKMVNFFHIMNDCGCEYSLEMLNKVVKT---LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLI 184 (465)
Q Consensus 110 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li 184 (465)
++.....++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++...-.+.+..++..+.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 777776666654 46999999999998864 4455566555544 44567888999999887743456677776666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh
Q 048269 185 KGYCD----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK 260 (465)
Q Consensus 185 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 260 (465)
..+.. .|++++|.+.+++..... +.+..++..+...|...|++++|.+.+++..+. .|.+..++..+..+|..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 55554 467889999999988764 446788999999999999999999999999876 56467777777666543
Q ss_pred c-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CCHhh---
Q 048269 261 R-------------------GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--PDISL--- 316 (465)
Q Consensus 261 ~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~--- 316 (465)
. +..+.|...+++..+... .+...+..+...|...|++++|...|++... ++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 2 235677778877776532 3566788899999999999999999998865 33322
Q ss_pred -HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC--CCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269 317 -YHGLIK-GLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG--RKGPDPLVNFDTIFVGGLVKAGKSLDAA 392 (465)
Q Consensus 317 -~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~ 392 (465)
+..+.. .+...|++++|+..|++.++. .|+.......+........ ...-+.++.+|..+...|...|++++|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 222222 245679999999999998854 5654433333222211000 1112456788999999999999999999
Q ss_pred HHHHHHHhCC-CCCCHhhH
Q 048269 393 KYVERVMNRG-VEVPRFDY 410 (465)
Q Consensus 393 ~~~~~m~~~~-~~p~~~~~ 410 (465)
+.|++.++.| ..|+..+|
T Consensus 451 ~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -------------------
T ss_pred HHHHHHHhcCCCCCcHhhc
Confidence 9999999854 33444443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.6e-14 Score=126.01 Aligned_cols=222 Identities=11% Similarity=0.007 Sum_probs=109.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYS----LEMLN 147 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 147 (465)
...|..+...+...|++++|...|+++.+.+ .+..++..+..++...|++++|+..++...+... .++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3445555555555666666666665555554 4555555555555555555555555555544210 001 34444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 227 (465)
.+..++...|++++|...|++.. +. .|+. ..+.+.|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~----------------------------------~~--~~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSL----------------------------------TE--HRTA-------DILTKLRN 120 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH----------------------------------HH--CCCH-------HHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH----------------------------------hc--Cchh-------HHHHHHhH
Confidence 45555555555555555555544 32 1221 12333344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 228 DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVE 307 (465)
Q Consensus 228 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 307 (465)
+++|.+.++.+... .|.+...+..+...+...|++++|...+++..+... .+...+..+...|...|++++|...++
T Consensus 121 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44444444444433 222334444444455555555555555555444321 134444455555555555555555555
Q ss_pred HhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 308 EIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 308 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
+..+ .+...|..+...+...|++++|...|++..+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4443 2344455555556666666666666655553
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=2.3e-12 Score=131.13 Aligned_cols=270 Identities=11% Similarity=0.007 Sum_probs=173.2
Q ss_pred hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 048269 86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYL 165 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 165 (465)
..|++++|.++.++. .++.+|..+..++...|++++|++.|... -|...|..++.+|.+.|++++|.++
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555555533 24556777777777777777777777442 3556666677777777777777777
Q ss_pred HHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 166 ILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD 245 (465)
Q Consensus 166 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 245 (465)
|....... +++...+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1157 L~mArk~~-~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1157 LQMARKKA-RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 76655211 23223334666777776666433322 2 245555666777777777777777777653
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHH
Q 048269 246 LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLL 325 (465)
Q Consensus 246 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 325 (465)
..|..+..+|.+.|+++.|.+.+++. .+..+|..+..+|...|++..|...... ...+...+..++..|.
T Consensus 1222 ---~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQ 1291 (1630)
T ss_pred ---hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHH
Confidence 26777777777777777777777665 2456677777777777777777766654 3345566778889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcccC------------CCCCCC------chHHHHHHHHHHHhcC
Q 048269 326 RLRRAREATQVFREMIKRGCEPTMH-TYIMLLQGHLGKRG------------RKGPDP------LVNFDTIFVGGLVKAG 386 (465)
Q Consensus 326 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~------------~~~~~~------~~~~~~~li~~~~~~g 386 (465)
+.|.+++|+.+++..+ |+.+... .|..+-..+++-.. +..+++ +...|..++..|.+.|
T Consensus 1292 ~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~ 1369 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 1369 (1630)
T ss_pred HcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998877 4444332 33333333333222 333333 5678999999999999
Q ss_pred CHHHHHH
Q 048269 387 KSLDAAK 393 (465)
Q Consensus 387 ~~~~A~~ 393 (465)
+++.|..
T Consensus 1370 e~dnA~~ 1376 (1630)
T 1xi4_A 1370 EYDNAII 1376 (1630)
T ss_pred cHHHHHH
Confidence 9999984
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=1.7e-15 Score=133.76 Aligned_cols=245 Identities=11% Similarity=-0.075 Sum_probs=140.8
Q ss_pred cCChhHHHHHHHHHhhCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048269 87 SRNIDLFWETLQEMGRRRL----VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA 162 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 162 (465)
.|++++|+..|+++.+... .+..++..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666665432 123456666666666666666666666666543 34556666666666666666666
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048269 163 KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR 242 (465)
Q Consensus 163 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 242 (465)
...|++.....+.+..++..+...|...|++++|...|+.+.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 66666666333445566666666666777777777777666654 233333333444445566777777777665554
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHH
Q 048269 243 MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHG 319 (465)
Q Consensus 243 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 319 (465)
.|.+...+ .++..+...++.++|...+.+........ +...+..+...|...|++++|...|+++...++..+..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 22133333 35555666666666776666665432110 13556666667777777777777777776633333334
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048269 320 LIKGLLRLRRAREATQVF 337 (465)
Q Consensus 320 li~~~~~~~~~~~a~~~~ 337 (465)
...++...|++++|++-+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 445555666666666554
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=5.3e-14 Score=122.43 Aligned_cols=200 Identities=10% Similarity=-0.038 Sum_probs=164.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
...|..+...+...|++++|.+.|+++.+.++.+..++..+...+...|++++|++.|+.+.+.. +.+...+..+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778888889999999999999999888777777888888999999999999999999888764 45777888888888
Q ss_pred HcCCCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 154 CQRKLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
...|++++|.++++++.. ..+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999998874 444467778888888888899999999988887753 33577788888888888999999
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 232 MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.+.++.+.+. .|.+...+..+...+...|+.++|.++++++.+.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9888888764 4436677888888888888888888888888775
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=8e-14 Score=118.82 Aligned_cols=202 Identities=11% Similarity=-0.040 Sum_probs=153.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+...|++++|.+.|+.+.+..+.+..++..+...+...|++++|.+.++.+.+.. +.+..++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 566778888888888888888888888887776677788888888888888888888888887754 4567777778888
Q ss_pred HHcC-CCHHHHHHHHHHhhc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHH
Q 048269 153 LCQR-KLVVEAKYLILKLSE--WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDD 229 (465)
Q Consensus 153 ~~~~-~~~~~a~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 229 (465)
+... |++++|...++++.. ..+.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888774 333446677777888888888888888888877653 234677777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
+|.+.++.+...... .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEV-LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888888877765221 36666777777777888888888887777654
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.1e-14 Score=123.46 Aligned_cols=212 Identities=11% Similarity=-0.004 Sum_probs=176.3
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-------hHHHHHHHHHHHhcC
Q 048269 50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN-------DKTFKIALMTLAEVR 122 (465)
Q Consensus 50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~ 122 (465)
.++++.|+..|+.++... .+...|..+..++...|++++|.+.+++..+..+.+ ..++..+...+...|
T Consensus 18 ~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 358899999999985544 588999999999999999999999999988755422 578999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
++++|+..|+...+. .|+. ..+...|++++|...++++....+.+...+..+...+...|++++|...|+.
T Consensus 94 ~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 94 DLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp CHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999985 4554 3455668889999999998854556677888888899999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 203 MTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 203 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
..+.. +.+..++..+..++.+.|++++|.+.++...+. .|.+..+|..+..++...|++++|...+++..+.
T Consensus 165 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 165 MIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88764 346788888888999999999999999888876 4546778888888888999999999888887764
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=4.1e-14 Score=124.66 Aligned_cols=236 Identities=10% Similarity=-0.044 Sum_probs=157.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS--LEMLNKVV 150 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll 150 (465)
|+..+......+...|++++|+..|+++.+.++.+..++..+..++...|++++|+..++...+.+..++ ...|..+.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4455666777888888888888888888887776666788888888888888888888888877331111 23477777
Q ss_pred HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269 151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 230 (465)
.++...|++++|+..|++.....+.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888774345566778888888888888888888888777652 3355666666634444458888
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHHhcCCHH
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK---ISQAYTMLEEMFKRG-IEADN------LTLSSIIYGLLARGRLR 300 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~~~~------~~~~~li~~~~~~~~~~ 300 (465)
|.+.|+...+. .|.+...+..+..++...|+ ++.|...+++..+.. -.|+. ..|..+...|...|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 88888877765 44355666667777777776 666777776665431 11221 33444455555555555
Q ss_pred HHHHHHHHhcC
Q 048269 301 EAYKVVEEIEK 311 (465)
Q Consensus 301 ~a~~~~~~~~~ 311 (465)
+|...|+++.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.8e-14 Score=122.30 Aligned_cols=196 Identities=13% Similarity=0.038 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+...+..+...+.+.|++++|+..|+...+.. +.+...+..+..++.+.|++++|+..|++.....+.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34455556666666666666666666665543 44555566666666666666666666666553334455556666666
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHH
Q 048269 187 YCDV-----------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVI 255 (465)
Q Consensus 187 ~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 255 (465)
+... |++++|+..|++..+.. +-+...+..+..++...|++++|++.|++..+.. . +...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--D-TPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-CHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--c-chHHHHHHH
Confidence 6555 55555555555554432 1134444555555555555555555555554443 2 444555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 256 DWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
.+|...|++++|...|++..+... .+...+..+...+...|++++|...|++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555544321 1344444444445555555555544443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=1.6e-14 Score=124.84 Aligned_cols=204 Identities=12% Similarity=-0.003 Sum_probs=151.9
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
..+...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|+..|+.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34667788888888999999999999999988777778888889999999999999999999888764 45778888888
Q ss_pred HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269 151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 230 (465)
..+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998874446677888888888999999999999998887753 3467788888888889999999
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 278 (465)
|.+.++.+... .|.+..++..+..+|...|++++|...++++.+..
T Consensus 178 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999888766 34367788888888888999999999988887753
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=1.6e-13 Score=119.36 Aligned_cols=198 Identities=10% Similarity=-0.080 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 188 (465)
..+..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.++++....+.+...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 345555555556666666666666555543 3345555555555555566666666555555222334555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQA 267 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a 267 (465)
..|++++|...|+.+.+.+..| +...+..+...+...|++++|.+.+++..+. .|.+...+..+...+...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555422222 3344455555555555555555555555443 222344455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269 268 YTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310 (465)
Q Consensus 268 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 310 (465)
...++++.+.. +.+...+..+...+...|+.++|...++++.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555544432 1233344444444444444444444444443
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=9.1e-14 Score=127.74 Aligned_cols=233 Identities=9% Similarity=0.017 Sum_probs=194.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE-LKKMVNFFHIMNDCGCEYSLEMLNKVVK 151 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 151 (465)
+...|+.+..++.+.|++++|++.++++.+.++.+..+|+.+..++...|+ +++|+..|+++.+.. +-+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356788888899999999999999999999988888899999999999997 999999999999875 557888999999
Q ss_pred HHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh-cCCHHH
Q 048269 152 TLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK-INKDDE 230 (465)
Q Consensus 152 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~ 230 (465)
++...|++++|+..|+++..-.+-+..+|..+..++...|++++|+..|+++.+.. +-+...|+.+..++.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999885557788999999999999999999999999999874 2367889999999888 566577
Q ss_pred H-----HHHHHHHHHcCCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 048269 231 A-----MKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG--KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG------ 297 (465)
Q Consensus 231 A-----~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~------ 297 (465)
| ++.|+..... .|.+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 7 4788888765 5657788888888888887 688999988887 33 3345677888888888764
Q ss_pred ---CHHHHHHHHHHh-cC
Q 048269 298 ---RLREAYKVVEEI-EK 311 (465)
Q Consensus 298 ---~~~~a~~~~~~~-~~ 311 (465)
..++|..+++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 257888888888 55
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.5e-13 Score=117.06 Aligned_cols=200 Identities=8% Similarity=-0.121 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
..++..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|.+.+++.....+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456666666666677777777766666543 344556666666666666666666666666533344556666666666
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269 188 CDV-GDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS 265 (465)
Q Consensus 188 ~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 265 (465)
... |++++|...++.+.+.+..| +...+..+..++...|++++|.+.++++.+. .|.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHH
Confidence 666 66666666666666522222 2455566666666666666666666666554 2324555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269 266 QAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310 (465)
Q Consensus 266 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 310 (465)
+|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 666666665554221244444444555555555555555555543
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=3e-12 Score=112.84 Aligned_cols=220 Identities=8% Similarity=-0.059 Sum_probs=140.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAE----VRELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
++.++..+...+...|++++|.+.|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 56667777777777777777777777776633 34566667777777 777777777777777654 5666666
Q ss_pred HHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269 149 VVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIE 220 (465)
Q Consensus 149 ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 220 (465)
+...|.. .+++++|+..|++.... .+..++..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 6677766 77777777777776621 255666666666666 677777777777766654 4455556666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048269 221 TFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYG 292 (465)
Q Consensus 221 ~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 292 (465)
.|.. .+++++|.+.|+...+.+ +...+..+...|.. .+++++|...|++..+.+. ...+..+...
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 6665 666677777666666542 34455566666666 6666666666666665532 3444445555
Q ss_pred HHh----cCCHHHHHHHHHHh
Q 048269 293 LLA----RGRLREAYKVVEEI 309 (465)
Q Consensus 293 ~~~----~~~~~~a~~~~~~~ 309 (465)
|.+ .+++++|...|++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHH
Confidence 554 55555555555443
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=4.8e-13 Score=117.73 Aligned_cols=247 Identities=11% Similarity=0.025 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHHHH
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVDKMIETF 222 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~ 222 (465)
.+......+...|++++|+..|++.....+.+...+..+...|...|++++|+..++...+.+-.+ ....|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455666677777777777777664344455567777777777777777777777776632111 233467777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048269 223 FKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREA 302 (465)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 302 (465)
...|++++|.+.|+...+. .|.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765 34356677777778888888888888887776652 23455666666233344588888
Q ss_pred HHHHHHhcC---CCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcccCCCCCCCchHHH
Q 048269 303 YKVVEEIEK---PDISLYHGLIKGLLRLRR---AREATQVFREMIKRG-CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFD 375 (465)
Q Consensus 303 ~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 375 (465)
...|+++.+ .+...+..+...+...|+ +++|...|++..+.. -.|+.. -..+. ..|
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~----------------~~~ 224 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDELI----------------EAN 224 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHHHH----------------HHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHHHH----------------HHH
Confidence 888887776 335566667777777777 777888888877541 113211 11111 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHH
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKF 413 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l 413 (465)
..+...|...|++++|.+.++++.+ +.|+.. .+..+
T Consensus 225 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 225 EYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHHh
Confidence 5667778999999999999999997 456544 44433
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=8.9e-14 Score=130.45 Aligned_cols=270 Identities=9% Similarity=-0.071 Sum_probs=211.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND----KTFKIALMTLAEVRELKKMVNFFHIMNDC----G-CEYSLE 144 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 144 (465)
...+..+...+...|++++|+..|+++.+.++.+. .++..+...+...|++++|+..|++..+. + .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455677888999999999999999998776554 47888999999999999999999987663 1 123456
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhc-----C-CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLSE-----W-IKPNEIAYGWLIKGYCDVGD-----------------LIEASKIWN 201 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 201 (465)
++..+...|...|++++|...+++... + .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 788888999999999999999998761 1 22335678888999999999 999999988
Q ss_pred HHHHC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHhcCChHHHHHHHH
Q 048269 202 LMTDE----GFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG----LSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 202 ~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
+..+. +-. ....++..+...+...|++++|.+.+++..+......+ ..++..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 87542 111 13457888999999999999999999988654211001 2378889999999999999999999
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 273 EMFKRGIE-----ADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQVFR 338 (465)
Q Consensus 273 ~m~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~ 338 (465)
+....... ....++..+...|...|++++|...+++... .+ ...+..+...|...|++++|.+.|+
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 87753211 1246678888999999999999999998876 22 3467788889999999999999999
Q ss_pred HHHHc
Q 048269 339 EMIKR 343 (465)
Q Consensus 339 ~m~~~ 343 (465)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99854
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.3e-12 Score=112.56 Aligned_cols=223 Identities=11% Similarity=-0.010 Sum_probs=196.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKLSEWIKPNEIAYGW 182 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (465)
++.++..+...+...|++++|+..|+...+ +.+...+..+...|.. .+++++|...|++.... .+...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 566788899999999999999999999998 3466788889999999 99999999999998832 27888999
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCcchHHHH
Q 048269 183 LIKGYCD----VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFK----INKDDEAMKVFQMMRVKRMDDLGLSTYRIV 254 (465)
Q Consensus 183 li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l 254 (465)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|+...+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHH
Confidence 9999999 999999999999999875 77889999999999 999999999999998864 45678888
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhcC-CCHhhHHHHHHHHH
Q 048269 255 IDWMCK----RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA----RGRLREAYKVVEEIEK-PDISLYHGLIKGLL 325 (465)
Q Consensus 255 i~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 325 (465)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888888 999999999999998875 56778888899999 9999999999998877 55778888888999
Q ss_pred h----cCCHHHHHHHHHHHHHcC
Q 048269 326 R----LRRAREATQVFREMIKRG 344 (465)
Q Consensus 326 ~----~~~~~~a~~~~~~m~~~~ 344 (465)
. .+++++|.+.|++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 8 899999999999999775
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.1e-13 Score=122.15 Aligned_cols=247 Identities=9% Similarity=-0.028 Sum_probs=191.7
Q ss_pred ChhHHHHHHHHHhhcCCCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFA-HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
+++.|+..|+.++...+.-. .+..+|..+...+...|++++|...|+++.+.++.+..++..+...+...|++++|+..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 99 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 67899999999844322111 25788999999999999999999999999998888889999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP 210 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 210 (465)
|+.+.+.. +.+..++..+..++...|++++|...|+++... .|+.......+..+...|++++|...+....... ++
T Consensus 100 ~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 176 (275)
T 1xnf_A 100 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK 176 (275)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 99999864 456888999999999999999999999998832 2333344445556677799999999998877653 33
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269 211 SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD--DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSS 288 (465)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (465)
+...+ .++..+...++.++|.+.++........ |.+..++..+...|...|++++|...|++..... |+. +..
T Consensus 177 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~ 251 (275)
T 1xnf_A 177 EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVE 251 (275)
T ss_dssp CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHH
T ss_pred chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHH
Confidence 43334 4777888889999999999988654211 1125788899999999999999999999998763 322 223
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048269 289 IIYGLLARGRLREAYKVV 306 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~ 306 (465)
...++...|++++|...+
T Consensus 252 ~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 355677778888887665
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=2.8e-13 Score=126.58 Aligned_cols=273 Identities=10% Similarity=-0.030 Sum_probs=212.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEY- 141 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 141 (465)
......+......+...|++++|...|+++.+.++.+ ..++..+...+...|++++|+..++..... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3466777888899999999999999999998876654 357888899999999999999999987552 2122
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhc--CCCCC----HHhHHHHHHHHHhcCC--------------------HHH
Q 048269 142 SLEMLNKVVKTLCQRKLVVEAKYLILKLSE--WIKPN----EIAYGWLIKGYCDVGD--------------------LIE 195 (465)
Q Consensus 142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~----~~~~~~li~~~~~~g~--------------------~~~ 195 (465)
...++..+...+...|++++|...+++... ...++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 255678888999999999999999998761 11112 4578888999999999 999
Q ss_pred HHHHHHHHHHC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C---CCcchHHHHHHHHHhcCChHH
Q 048269 196 ASKIWNLMTDE----GFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMD-D---LGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 196 a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~---~~~~~~~~li~~~~~~~~~~~ 266 (465)
|...+....+. +..+ ...++..+...+...|++++|.+.+++..+.... + ....++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99998887542 2111 2457888899999999999999999987654111 1 012378888999999999999
Q ss_pred HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHH
Q 048269 267 AYTMLEEMFKR----GIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRARE 332 (465)
Q Consensus 267 a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~ 332 (465)
|...+++.... +..+ ...++..+...|...|++++|...+++... .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987643 1111 145678888999999999999999998876 22 5567788889999999999
Q ss_pred HHHHHHHHHHc
Q 048269 333 ATQVFREMIKR 343 (465)
Q Consensus 333 a~~~~~~m~~~ 343 (465)
|...+++..+.
T Consensus 326 A~~~~~~al~~ 336 (406)
T 3sf4_A 326 AMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=1.2e-13 Score=119.27 Aligned_cols=200 Identities=11% Similarity=-0.004 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
...+|..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|+..+++.....+.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34456667777777777777777777777643 44666777777777777777777777777763335566777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .|.+...+..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776653 335666777777777777777777777777655 33355666677777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 267 AYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 267 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
|...++++.+.. +.+..++..+..+|...|++++|...++++.+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 777777766543 22455566666666666666666666665544
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=2.9e-13 Score=122.84 Aligned_cols=269 Identities=10% Similarity=-0.037 Sum_probs=205.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN----DKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCE-YSLEM 145 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 145 (465)
..+......+...|++++|...|+++.+.++.+ ..++..+...+...|++++|++.++...+. +.. ....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345556778889999999999999998876644 357788889999999999999999887552 111 23556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCC----HHhHHHHHHHHHhcCC--------------------HHHHHHH
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLS--EWIKPN----EIAYGWLIKGYCDVGD--------------------LIEASKI 199 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 199 (465)
+..+...+...|++++|...+++.. ....++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999866 111122 3478888889999999 9999998
Q ss_pred HHHHHHC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 048269 200 WNLMTDE----GFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR----MDDLGLSTYRIVIDWMCKRGKISQAYTM 270 (465)
Q Consensus 200 ~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~ 270 (465)
+++..+. +.. ....++..+...+...|++++|.+.+++..+.. ..+....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8877542 111 124578888899999999999999998876531 1111123788888999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHH
Q 048269 271 LEEMFKRGIE-AD----NLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQV 336 (465)
Q Consensus 271 ~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~ 336 (465)
+++....... .+ ..++..+...|...|++++|...+++... .+ ..++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887643111 11 45677888899999999999999998866 22 44677888899999999999999
Q ss_pred HHHHHHc
Q 048269 337 FREMIKR 343 (465)
Q Consensus 337 ~~~m~~~ 343 (465)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998854
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=8.3e-13 Score=121.35 Aligned_cols=239 Identities=9% Similarity=-0.031 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL-VVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
..+|..+...+.+.|++++|+..|+.+.+.. +-+..+|+.+..++...|+ +++|+..|++.....+.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4578888899999999999999999999875 5678899999999999997 9999999999985557789999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHh-cCChH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCK-RGKIS 265 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~~~~~ 265 (465)
+...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|++.|+++.+. .|.+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999874 347889999999999999999999999999987 56588899999999999 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhcC--CCHhhHHHHHHHHHhcC--------
Q 048269 266 QA-----YTMLEEMFKRGIEADNLTLSSIIYGLLARG--RLREAYKVVEEIEK--PDISLYHGLIKGLLRLR-------- 328 (465)
Q Consensus 266 ~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~-------- 328 (465)
+| +..+++...... -+...|..+...+...| ++++|...+.++.. .+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 588888887643 26778888888888888 68999999998822 55677888888888864
Q ss_pred -CHHHHHHHHHHH-HHcCCCCCHHHHH
Q 048269 329 -RAREATQVFREM-IKRGCEPTMHTYI 353 (465)
Q Consensus 329 -~~~~a~~~~~~m-~~~~~~p~~~~~~ 353 (465)
..++|+++|+++ .+ +.|....|.
T Consensus 332 ~~~~~A~~~~~~l~~~--~DP~r~~~w 356 (382)
T 2h6f_A 332 DILNKALELCEILAKE--KDTIRKEYW 356 (382)
T ss_dssp HHHHHHHHHHHHHHHT--TCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCchhHHHH
Confidence 358999999998 63 466554443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=9.3e-13 Score=123.05 Aligned_cols=297 Identities=10% Similarity=-0.055 Sum_probs=221.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhh---c--CC-CCC
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKTLCQRKLVVEAKYLILKLS---E--WI-KPN 176 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~--~~-~~~ 176 (465)
....+......+...|++++|+..|+.+.+.+ +.+ ..++..+...+...|++++|...+++.. . +. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44567778889999999999999999998864 333 3578888999999999999999999865 1 11 223
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHHHhcCC--------------------HHHH
Q 048269 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFE-PSIDVVDKMIETFFKINK--------------------DDEA 231 (465)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~--------------------~~~A 231 (465)
..++..+...|...|++++|...+++..+. +-. ....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 567888899999999999999999988763 101 124578889999999999 9999
Q ss_pred HHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 048269 232 MKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI-EAD----NLTLSSIIYGLLARGRLREA 302 (465)
Q Consensus 232 ~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~a 302 (465)
.+.+++.... +..+....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876542 21221345788889999999999999999998875311 112 33678888899999999999
Q ss_pred HHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhcccCCCCCCCch
Q 048269 303 YKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQVFREMIKRGC-EPTMHTYIMLLQGHLGKRGRKGPDPLV 372 (465)
Q Consensus 303 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~ 372 (465)
...+++... .+ ..++..+...|...|++++|...+++..+..- ..+.... .
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-------------------~ 307 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE-------------------G 307 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-------------------H
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH-------------------H
Confidence 999998876 22 55778888899999999999999999875411 1111111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHhhccch
Q 048269 373 NFDTIFVGGLVKAGKSLDAAKYVERVMNR----GVEVP-RFDYNKFLHYYSNEEGV 423 (465)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~ 423 (465)
.++..+...|...|++++|.+.+++..+. +..+. ..++..+...+...|+.
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 23455677789999999999999988752 22222 33667777777777765
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.9e-13 Score=126.08 Aligned_cols=279 Identities=12% Similarity=0.025 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhc---C---CCCCHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSL----EMLNKVVKTLCQRKLVVEAKYLILKLSE---W---IKPNEIA 179 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~---~~~~~~~ 179 (465)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+..+|...|++++|+..+++... . .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455556666677777777777666643 2222 3455566666666666666666666541 0 1222344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCC
Q 048269 180 YGWLIKGYCDVGDLIEASKIWNLMTDE----GF-EPSIDVVDKMIETFFKINK----------DDEAMKVFQMMRVKRMD 244 (465)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~ 244 (465)
+..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|.+.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 555555555556666666555554432 00 1112344444444555555 0000000
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC-
Q 048269 245 DLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----GI-EADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD- 313 (465)
Q Consensus 245 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~- 313 (465)
+++|...+++..+. +. ......+..+...|...|++++|...+++..+ .+
T Consensus 199 -------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 199 -------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 44444444433221 10 01123444555555566666666666655544 11
Q ss_pred ---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHH
Q 048269 314 ---ISLYHGLIKGLLRLRRAREATQVFREMIKRGCE-PTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSL 389 (465)
Q Consensus 314 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 389 (465)
...+..+...|...|++++|...|++..+.... .+... ...++..+...|...|+++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV-------------------EAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH-------------------HHHHHHHHHHHHHHcCCHH
Confidence 225666777777788888888888777643110 11110 0123445666778888888
Q ss_pred HHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 390 DAAKYVERVMNR----GVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 390 ~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
+|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888888887652 1111 12367777888888888888888888888763
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=6.6e-12 Score=112.70 Aligned_cols=218 Identities=10% Similarity=-0.003 Sum_probs=124.8
Q ss_pred hHHHHHHHHHhhCCCCChHHHHHHHHHHHh-------cCCH-------HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 91 DLFWETLQEMGRRRLVNDKTFKIALMTLAE-------VREL-------KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
++|..+|+++....+.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 566677777776666666666666666543 3554 66666666666521133455666666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH-hcCCHHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEI-AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF-KINKDDEAMKV 234 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~ 234 (465)
|++++|..+|++.....+.+.. +|..+...+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|.++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666666632222232 56666666666666666666666666543 223333433322221 24666666666
Q ss_pred HHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 235 FQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG-IEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 235 ~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
|+...+. .|.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 192 ~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 192 FELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666554 33355566666666666666666666666666542 233 244555555555555666666655555544
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=5.8e-12 Score=113.07 Aligned_cols=219 Identities=10% Similarity=0.010 Sum_probs=181.2
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHhh-CCCCChHHHHHHHHHH
Q 048269 54 RPVYLFFQYTQKAQPCFAHNSITFNRMVDIIG-------KSRNI-------DLFWETLQEMGR-RRLVNDKTFKIALMTL 118 (465)
Q Consensus 54 ~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~ 118 (465)
+.|...|+.++...+. ++..|..+...+. +.|++ ++|..+|++..+ ..+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6788899998766655 8999999988876 35886 899999999998 4666778999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCC-HH-HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH-hcCCHHH
Q 048269 119 AEVRELKKMVNFFHIMNDCGCEYS-LE-MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC-DVGDLIE 195 (465)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~-~~g~~~~ 195 (465)
.+.|++++|..+|+++.+. .|+ .. +|..++..+.+.|++++|..+|++.....+.+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999985 443 43 89999999999999999999999998544555566654444322 3699999
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKR-MDDL-GLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|+...... ..|. ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998753 3367889999999999999999999999999863 3441 456888899999999999999999999
Q ss_pred HHHCC
Q 048269 274 MFKRG 278 (465)
Q Consensus 274 m~~~~ 278 (465)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88763
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=3.4e-12 Score=105.15 Aligned_cols=167 Identities=13% Similarity=-0.031 Sum_probs=99.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
++.+|..+...+.+.|++++|++.|++..+.++.+..++..+..++.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 455666666666666666666666666666666566666666666666666666666666665543 3345555555556
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
+...++++.|...+.+.....+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666666553334455555666666666666666666666655542 224455555556666666666666
Q ss_pred HHHHHHHHc
Q 048269 233 KVFQMMRVK 241 (465)
Q Consensus 233 ~~~~~m~~~ 241 (465)
+.|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666555543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.1e-12 Score=119.09 Aligned_cols=278 Identities=12% Similarity=0.011 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhh-----cC-CCCCHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----LEMLNKVVKTLCQRKLVVEAKYLILKLS-----EW-IKPNEIA 179 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~-~~~~~~~ 179 (465)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++.. .+ .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556666677777777777666643 222 2445556666666666666666666643 01 1112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCc----HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHc
Q 048269 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPS----IDVVDKMIETFFKINK-------------DDEAMKVFQMMRVK 241 (465)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~-------------~~~A~~~~~~m~~~ 241 (465)
+..+...|...|++++|...+++..+..- .++ ..++..+...+...|+ .+++.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 45555555555555555555555443100 001 2234444444444444 0000000
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----
Q 048269 242 RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----GIE-ADNLTLSSIIYGLLARGRLREAYKVVEEIEK----- 311 (465)
Q Consensus 242 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----- 311 (465)
+++|...+++.... +.. .....+..+...+...|++++|...+++..+
T Consensus 159 ----------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 159 ----------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44444444433221 100 1123444555556666666666666665543
Q ss_pred CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcC
Q 048269 312 PD----ISLYHGLIKGLLRLRRAREATQVFREMIKRGC-EPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAG 386 (465)
Q Consensus 312 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 386 (465)
++ ...+..+...+...|++++|...+++..+... ..+.... ..++..+...|...|
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE-------------------AQSCYSLGNTYTLLQ 277 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH-------------------HHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH-------------------HHHHHHHHHHHHHhc
Confidence 11 22566677777788888888888877764310 1111110 123445667778889
Q ss_pred CHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 387 KSLDAAKYVERVMNR----GVEV-PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 387 ~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
++++|.+.++++.+. +-.+ ...++..+...+.+.|++++|...+++..+.
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999988887652 1111 1336777888888899999999999888765
No 64
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.6e-11 Score=116.23 Aligned_cols=334 Identities=10% Similarity=-0.038 Sum_probs=222.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-----NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKK 126 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 126 (465)
+.+.|+..|+.+ ... ++..+..+...+...+ ++++|...|++..+.|.+. .+..+...|...+..+.
T Consensus 53 d~~~A~~~~~~A-~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~ 124 (452)
T 3e4b_A 53 QIKQAEATYRAA-ADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFP 124 (452)
T ss_dssp ------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCT
T ss_pred CHHHHHHHHHHH-HhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCC
Confidence 337888888887 211 6667777777555555 7789999999998887655 56677777766655433
Q ss_pred ---HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH----HHHHHhhcCCCCCHHhHHHHHHHHHhcC---CHHHH
Q 048269 127 ---MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAK----YLILKLSEWIKPNEIAYGWLIKGYCDVG---DLIEA 196 (465)
Q Consensus 127 ---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~----~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~a 196 (465)
+.+.+......| +...+..+...|...+.++++. .++..... .++..+..|...|...| +.++|
T Consensus 125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHH
Confidence 444555544444 3455666777777777554444 44444433 33348888888999999 99999
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHH-H--HhcCChHHHHH
Q 048269 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKI----NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDW-M--CKRGKISQAYT 269 (465)
Q Consensus 197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~ 269 (465)
++.|+...+.| .++...+..+...|... +++++|.+.|+... . .+...+..+... + ...+++++|..
T Consensus 199 ~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 199 LKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P----GYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G----GSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 99999999887 45666667777777665 78999999999986 3 266677777776 4 46889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhcCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048269 270 MLEEMFKRGIEADNLTLSSIIYGLLARG-----RLREAYKVVEEIEKPDISLYHGLIKGLLR----LRRAREATQVFREM 340 (465)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m 340 (465)
+|++..+.| +...+..+...|. .| ++++|...|++....+...+..|...|.. ..++++|...|++.
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 999998877 6677777777777 55 99999999998885556667777777766 34899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 048269 341 IKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLV----KAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHY 416 (465)
Q Consensus 341 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 416 (465)
.+.|. |+... . |...|. ...+.++|..+|+...+.|. ++.......+..
T Consensus 349 a~~g~-~~A~~--~-----------------------Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~ 401 (452)
T 3e4b_A 349 ARNGQ-NSADF--A-----------------------IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEA 401 (452)
T ss_dssp HTTTC-TTHHH--H-----------------------HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHT
T ss_pred HhhCh-HHHHH--H-----------------------HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 87764 22211 1 222222 35689999999999988763 333333333344
Q ss_pred HhhccchHHHHHHHHHHHHc
Q 048269 417 YSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~ 436 (465)
....++.++|..+.++..+.
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHh
Confidence 44557788888888887765
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=1.3e-12 Score=124.45 Aligned_cols=213 Identities=8% Similarity=-0.041 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVREL-KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK 168 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (465)
+++++..++........+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444433333444444555555555555 55555555544432 22344455555555555555555555555
Q ss_pred hhcCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc--------CCHHHH
Q 048269 169 LSEWIKPNEIAYGWLIKGYCDV---------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI--------NKDDEA 231 (465)
Q Consensus 169 m~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A 231 (465)
...- .|+...+..+...+... |++++|+..|++..+.. +-+...|..+..+|... |++++|
T Consensus 163 al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 4411 23344444455555554 55555555555554432 12344455555555544 555555
Q ss_pred HHHHHHHHHcCCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 232 MKVFQMMRVKRMDD---LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 232 ~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (465)
.+.|++..+. .| .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++|...+..
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555555443 22 2444555555555555555555555555544321 1334444455555555555555544433
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=8e-12 Score=118.33 Aligned_cols=338 Identities=10% Similarity=-0.051 Sum_probs=199.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-----C
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNI---DLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-----E 123 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~ 123 (465)
+++.|+..|..+.. .| ++..+..+...|...|+. ++|...|++..+. ++..+..+...+...+ +
T Consensus 18 ~~~~A~~~~~~aa~--~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 18 DTVTAQQNYQQLAE--LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHH--HT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcC
Confidence 67788888888632 23 455666677777777777 7888888877755 4445666666454444 6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHH---HHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEA---KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIW 200 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a---~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 200 (465)
+++|+..|+...+.|. ++ .+..|...|...+..+++ .+.+..... ..+...+..|...|...+.++.+....
T Consensus 90 ~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 7788888888887662 22 566666677665554433 333333331 123456667777777777554444433
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc----CChHHHHHHHHH
Q 048269 201 NLMTDEGFEPSIDVVDKMIETFFKIN---KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR----GKISQAYTMLEE 273 (465)
Q Consensus 201 ~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~ 273 (465)
..+.+.-...+...+..|...|.+.| +.++|++.|+...+.|.. +...+..+...|... +++++|..+|++
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 22222111223337777788888888 788888888888776532 444445666666554 688888888888
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhcC-CCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcC
Q 048269 274 MFKRGIEADNLTLSSIIYG-L--LARGRLREAYKVVEEIEK-PDISLYHGLIKGLLRLR-----RAREATQVFREMIKRG 344 (465)
Q Consensus 274 m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~ 344 (465)
.. .| ++..+..+... | ...++.++|...|++..+ .+...+..|...|. .| ++++|...|++.. .|
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g 316 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR 316 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC
Confidence 77 33 44555556555 3 457888888888887766 56667777777776 44 8888888888765 22
Q ss_pred CCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh-
Q 048269 345 CEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK----AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN- 419 (465)
Q Consensus 345 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 419 (465)
+.... ..|...|.. ..++++|.++|++..+.|. ......|...|..
T Consensus 317 ---~~~A~-----------------------~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 317 ---EVAAD-----------------------YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQG 367 (452)
T ss_dssp ---CHHHH-----------------------HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSC
T ss_pred ---CHHHH-----------------------HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhC
Confidence 22222 223333343 4599999999999998663 3344555555654
Q ss_pred ---ccchHHHHHHHHHHHHcCCC
Q 048269 420 ---EEGVVMFEEVGKKLREVGLA 439 (465)
Q Consensus 420 ---~g~~~~a~~~~~~~~~~g~~ 439 (465)
..+.++|...+++..+.|..
T Consensus 368 ~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCH
Confidence 46899999999999988854
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=1.2e-11 Score=101.73 Aligned_cols=167 Identities=11% Similarity=0.023 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+..+|..+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45678888888888888888888888888765 55677888888888888888888888888774446667777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
+...++++.+...+....+.. +-+...+..+..++.+.|++++|++.|++..+. .|.+..+|..+..+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888877653 335677788888888888888888888888765 45467788888888888888888
Q ss_pred HHHHHHHHHHC
Q 048269 267 AYTMLEEMFKR 277 (465)
Q Consensus 267 a~~~~~~m~~~ 277 (465)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888887765
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=6.6e-13 Score=119.21 Aligned_cols=241 Identities=10% Similarity=-0.008 Sum_probs=117.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC------G 138 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 138 (465)
+..++..+...+...|++++|..+++++.+. ......++..+...+...|++++|+..++...+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777777777777777777777777652 2223456666677777777777777777666543 1
Q ss_pred C-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc-------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 048269 139 C-EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE-------WI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--- 206 (465)
Q Consensus 139 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 206 (465)
- +....++..+...+...|++++|...+++... +. +....++..+...+...|++++|..+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22234455566666666666666666665541 11 112333444555555555555555555554432
Q ss_pred ---CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 207 ---GFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVK-------RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 207 ---g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
+..| ...++..+..++...|++++|.+.++++... ...+.....+. .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~--------------------- 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-H--------------------- 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-H---------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-H---------------------
Confidence 1111 1233444444455555555555555444432 01110000000 0
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 276 KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 276 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
...+..+...+...+.+.++...+..... .+..++..+...|.+.|++++|.+.|++..+
T Consensus 244 -------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 244 -------AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01111112222333444444444544443 3345566677777777888888877777654
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.8e-12 Score=116.34 Aligned_cols=246 Identities=11% Similarity=0.008 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhc--------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 048269 143 LEMLNKVVKTLCQRKLVVEAKYLILKLSE--------WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE------GF 208 (465)
Q Consensus 143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 208 (465)
..++..+...+...|++++|..+++++.. ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455555556666666666666655541 22223344555555555555555555555555432 11
Q ss_pred -CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 048269 209 -EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK------RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR---- 277 (465)
Q Consensus 209 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 277 (465)
+....++..+...+...|++++|.+.+++..+. +..|....++..+...+...|++++|..+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 112334455555555555555555555554432 111212233444444444555555555554444332
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC
Q 048269 278 --GIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIKR-------GCEPT 348 (465)
Q Consensus 278 --~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~ 348 (465)
+..| .....+..+...|...|++++|.+.++++.+. ...+.
T Consensus 187 ~~~~~~------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 187 LGPDDP------------------------------NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp SCTTCH------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hCCCCH------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 0000 11223555566666666677666666666542 11111
Q ss_pred HHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhccchHHHH
Q 048269 349 MHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEV-PRFDYNKFLHYYSNEEGVVMFE 427 (465)
Q Consensus 349 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~ 427 (465)
.......... +..+...+...+.+.+|...+++.... .| +..++..+...|.+.|++++|.
T Consensus 237 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 298 (311)
T 3nf1_A 237 NKPIWMHAEE----------------REECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAE 298 (311)
T ss_dssp -CCHHHHHHH----------------HHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHH----------------HHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHH
Confidence 1111111111 222334445666777777777776642 33 3447778888888888888888
Q ss_pred HHHHHHHHc
Q 048269 428 EVGKKLREV 436 (465)
Q Consensus 428 ~~~~~~~~~ 436 (465)
.++++..+.
T Consensus 299 ~~~~~al~l 307 (311)
T 3nf1_A 299 TLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3.8e-12 Score=121.28 Aligned_cols=213 Identities=12% Similarity=-0.031 Sum_probs=184.2
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV-VEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWN 201 (465)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 201 (465)
.+++++..++...... +.+...+..+..++...|++ ++|++.|++.....+.+..+|..+...|...|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667777887766643 45788899999999999999 999999999884446678999999999999999999999999
Q ss_pred HHHHCCCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc--------CCh
Q 048269 202 LMTDEGFEPSIDVVDKMIETFFKI---------NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR--------GKI 264 (465)
Q Consensus 202 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~--------~~~ 264 (465)
...+. .|+...+..+...+... |++++|.+.|++..+. .|.+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99987 47788999999999999 9999999999999876 565788999999999998 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 265 SQAYTMLEEMFKRGIE--ADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFRE 339 (465)
Q Consensus 265 ~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 339 (465)
++|...|++..+.... -+...+..+..+|...|++++|...|++..+ .+...+..+...+...|++++|++.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999886321 3788899999999999999999999999877 4566788888889999999999876654
Q ss_pred H
Q 048269 340 M 340 (465)
Q Consensus 340 m 340 (465)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=3e-11 Score=112.05 Aligned_cols=293 Identities=9% Similarity=-0.021 Sum_probs=207.5
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCH--HhHHHHHHHH--HhcCChhHHH-----------HHHHHHhhCCCCC-----hHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNS--ITFNRMVDII--GKSRNIDLFW-----------ETLQEMGRRRLVN-----DKT 110 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~--~~~~~l~~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~-----~~~ 110 (465)
.+.+.|..+++.+...-.....|. ..|..++..- .-.++++.+. +.++.+.....+. ...
T Consensus 26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~ 105 (383)
T 3ulq_A 26 FSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYF 105 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHH
Confidence 377888888888733333333343 3334443321 1223333333 5666554322111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCC----CCHH
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIK----PNEI 178 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~----~~~~ 178 (465)
+......+...|++++|+..|+...+. +-.+ ...++..+..+|...|++++|...+++.. .... ....
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 333667788999999999999998763 2112 34678889999999999999999999976 2221 1245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCcc
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVK----RMDDLGLS 249 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 249 (465)
+++.+...|...|++++|...|++..+. +-.+ ...++..+..+|...|++++|.+.+++..+. +..|....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 7888899999999999999999988753 1111 2347888999999999999999999988762 22243567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhcC--CCHhhHHHH
Q 048269 250 TYRIVIDWMCKRGKISQAYTMLEEMFKR----GIEADNLTLSSIIYGLLARGR---LREAYKVVEEIEK--PDISLYHGL 320 (465)
Q Consensus 250 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~l 320 (465)
++..+...|.+.|++++|...+++..+. +.+.....+..+...|...|+ +++|..++++... .....+..+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 345 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 7899999999999999999999987653 111122335667778888898 8899999988865 334567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048269 321 IKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 321 i~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
...|...|++++|...|++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998753
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=5.1e-11 Score=110.52 Aligned_cols=290 Identities=9% Similarity=-0.035 Sum_probs=203.2
Q ss_pred HHhcCChhHHHHHHHHHhhCC--C-CChH--HHHHHHH--HHHhcCCHHHHH-----------HHHHHhhhCCCCCCHHH
Q 048269 84 IGKSRNIDLFWETLQEMGRRR--L-VNDK--TFKIALM--TLAEVRELKKMV-----------NFFHIMNDCGCEYSLEM 145 (465)
Q Consensus 84 ~~~~g~~~~a~~~~~~~~~~~--~-~~~~--~~~~l~~--~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 145 (465)
+.+.+++++|..+++++.+.- . .+.. .|..++. .....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 456899999999999886532 1 2332 2333322 222233444444 6666665422 12121
Q ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHhhc---CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-
Q 048269 146 ------LNKVVKTLCQRKLVVEAKYLILKLSE---WIKP---NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GF- 208 (465)
Q Consensus 146 ------~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~- 208 (465)
+......+...|++++|+..|++... ..+. ...++..+...|...|+++.|...+.+..+. +-
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22255677889999999999999872 1222 3467889999999999999999999988763 11
Q ss_pred -CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC
Q 048269 209 -EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRM----DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR----GI 279 (465)
Q Consensus 209 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~ 279 (465)
.....+++.+...|...|++++|.+.|++..+... .+....++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11246788899999999999999999988765411 1111247888999999999999999999988762 23
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCH---hhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC
Q 048269 280 -EADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PDI---SLYHGLIKGLLRLRR---AREATQVFREMIKRGCEP 347 (465)
Q Consensus 280 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~---~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p 347 (465)
+....++..+...|.+.|++++|...+++... .+. ..+..+...|...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 33467788899999999999999999998876 232 224566777888888 77777777765 3223
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 348 TMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 348 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
+... .+..+...|...|++++|.+.+++..+
T Consensus 337 ~~~~----------------------~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLED----------------------FAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2221 234466678999999999999999876
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2.9e-11 Score=99.26 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=95.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 154 (465)
..|..+...+...|++++|...++++.+..+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666666665555555566666666666666666666666665543 334555555566666
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 048269 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 234 (465)
..|++++|.+.++++....+.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666553334455555555555666666666666665555442 22345555555555555566655555
Q ss_pred HHHHHH
Q 048269 235 FQMMRV 240 (465)
Q Consensus 235 ~~~m~~ 240 (465)
++...+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=4.6e-09 Score=103.07 Aligned_cols=375 Identities=9% Similarity=0.037 Sum_probs=218.4
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC---HHHHHHHHH
Q 048269 56 VYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE---LKKMVNFFH 132 (465)
Q Consensus 56 a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 132 (465)
....|+..+...+. |...|..++..+.+.+.++.+..+|+.+...-+.+...|...+..-.+.++ ++.+..+|+
T Consensus 51 ~i~~lE~~l~~np~---d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQPT---DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34444444455544 777777777777777777777777777776666666666666666666666 777777777
Q ss_pred HhhhCC-CCCCHHHHHHHHHHHHcCCCH--------HHHHHHHHHhh--cCC-CC-CHHhHHHHHHHHH---------hc
Q 048269 133 IMNDCG-CEYSLEMLNKVVKTLCQRKLV--------VEAKYLILKLS--EWI-KP-NEIAYGWLIKGYC---------DV 190 (465)
Q Consensus 133 ~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~--~~~-~~-~~~~~~~li~~~~---------~~ 190 (465)
+..... .+|++..|...+....+.++. +.+.++|+... -|. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 766642 126666666655544333322 23345666544 333 33 3445555554332 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHH-------------------------------------------------------
Q 048269 191 GDLIEASKIWNLMTDEGFEPSIDVV------------------------------------------------------- 215 (465)
Q Consensus 191 g~~~~a~~~~~~m~~~g~~~~~~~~------------------------------------------------------- 215 (465)
++++.+.++|+.........-..+|
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 3345566666666542111111222
Q ss_pred ------------------HHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH-H
Q 048269 216 ------------------DKMIETFFKIN-------KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY-T 269 (465)
Q Consensus 216 ------------------~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~ 269 (465)
...+..--..+ ..+.+..+|++.... .|.....|-..+.-+...|+.+.|. .
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 11111111110 011223334444433 2224445555555566677777886 8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-------------CC------------HhhHHHHHHHH
Q 048269 270 MLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-------------PD------------ISLYHGLIKGL 324 (465)
Q Consensus 270 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~ 324 (465)
+|+..... ++.+...+...+....+.|+++.|..+|+.+.. |+ ..+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 88888764 344566667777788888899999988887764 21 23566667777
Q ss_pred HhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhhccc-C---------CCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269 325 LRLRRAREATQVFREMIKR-G-CEPTMHTYIMLLQGHLGKR-G---------RKGPDPLVNFDTIFVGGLVKAGKSLDAA 392 (465)
Q Consensus 325 ~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~-~---------~~~~~~~~~~~~~li~~~~~~g~~~~A~ 392 (465)
.+.|+.+.|..+|.+.++. + ..+........+....... + -..++.+...|...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 7788889999999888765 2 2222333333333222111 1 1123445667778888788888888999
Q ss_pred HHHHHHHhCCCCC--CHhhHHHHHHHHhhccchHHHHHHHHHHHHc
Q 048269 393 KYVERVMNRGVEV--PRFDYNKFLHYYSNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 393 ~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (465)
.+|++.......+ ....|..++.--.+.|+.+.+..+.+++.+.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998888643211 2347777777777788888888888888876
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=3.5e-10 Score=104.39 Aligned_cols=266 Identities=13% Similarity=0.000 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-h----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVN-D----KTFKIALMTLAEVRELKKMVNFFHIMNDCGC-EYS----LEML 146 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 146 (465)
.......+...|++++|...+++.......+ . .++..+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999998877655422 2 2456667778888999999998888765210 112 2335
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh-----cCCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CcHHH
Q 048269 147 NKVVKTLCQRKLVVEAKYLILKLS-----EWIK--P-NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE----PSIDV 214 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~ 214 (465)
..+...+...|++++|...+++.. .+.. | ....+..+...+...|++++|...+++..+..-. ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 667778888999999999988865 1221 2 3455667788888999999999999888763211 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 048269 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR-----IVIDWMCKRGKISQAYTMLEEMFKRGIEA---DNLTL 286 (465)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~ 286 (465)
+..+...+...|++++|...+++.......+.....+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888888999999999999988765422221211222 23344778999999999998876543221 12245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcC-----C---CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 287 SSIIYGLLARGRLREAYKVVEEIEK-----P---DI-SLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~~~~-----~---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
..+...+...|++++|...++.... . +. ..+..+..++...|+.++|...+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777888899999999999988765 1 11 2455567778889999999999988864
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=9.2e-11 Score=96.23 Aligned_cols=165 Identities=11% Similarity=0.030 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 188 (465)
..+..+...+...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...++++....+.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 355666677777777777777777776643 4456667777777777777777777777766333556667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.++..... .|.+..++..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776653 335666677777777777777777777776655 2335566777777777777777777
Q ss_pred HHHHHHHHC
Q 048269 269 TMLEEMFKR 277 (465)
Q Consensus 269 ~~~~~m~~~ 277 (465)
..+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777766543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.4e-10 Score=105.75 Aligned_cols=305 Identities=10% Similarity=-0.038 Sum_probs=201.5
Q ss_pred CCCCHHhHHHHHHHH--HhcCChhHHHHHHHHHhhCC--C-CChH--HHHHHHHH--HHhcCCHHHHH---------HHH
Q 048269 70 FAHNSITFNRMVDII--GKSRNIDLFWETLQEMGRRR--L-VNDK--TFKIALMT--LAEVRELKKMV---------NFF 131 (465)
Q Consensus 70 ~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~--~-~~~~--~~~~l~~~--~~~~~~~~~a~---------~~~ 131 (465)
..|+..+-+.|-..| .+.+++++|..+++++.+.. . .+.. .|-.++.. ..-.+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345667777777777 78899999999998875532 1 2222 22333321 11112222222 555
Q ss_pred HHhhhCCCCCCH-H---HHHHHHHHHHcCCCHHHHHHHHHHhhcC--CCC----CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 132 HIMNDCGCEYSL-E---MLNKVVKTLCQRKLVVEAKYLILKLSEW--IKP----NEIAYGWLIKGYCDVGDLIEASKIWN 201 (465)
Q Consensus 132 ~~~~~~~~~~~~-~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~----~~~~~~~li~~~~~~g~~~~a~~~~~ 201 (465)
+.+.....+.+. . .+......+...|++++|+..|++...- ..+ ...++..+...|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432211111 1 1223445567889999999999997611 112 24578888899999999999999998
Q ss_pred HHHHC----CC-CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 048269 202 LMTDE----GF-EP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGKISQAYTML 271 (465)
Q Consensus 202 ~m~~~----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 271 (465)
+..+. +- .+ ...+++.+..+|...|++++|.+.|++..+. +..+....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87652 11 11 2567888899999999999999999887653 111112346778888999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CC---HhhHHHHHHHHHhcCC---HHHHHH
Q 048269 272 EEMFK-----RGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PD---ISLYHGLIKGLLRLRR---AREATQ 335 (465)
Q Consensus 272 ~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~---~~~~~~li~~~~~~~~---~~~a~~ 335 (465)
++... ... ....++..+...|.+.|++++|...+++... .+ ...+..+...|...++ +++|+.
T Consensus 246 ~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 98876 432 2367788888999999999999999998765 12 2234555556666777 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 336 VFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 336 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
.+++. +..|+... .+..+...|...|++++|.+.|++..+
T Consensus 325 ~~~~~---~~~~~~~~----------------------~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEA----------------------CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHH----------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHH----------------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77652 22222221 133466778999999999999998864
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=1.9e-09 Score=99.48 Aligned_cols=271 Identities=11% Similarity=-0.011 Sum_probs=191.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCCC----HHhH
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLE----MLNKVVKTLCQRKLVVEAKYLILKLS--EWIKPN----EIAY 180 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~~----~~~~ 180 (465)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+++.. .....+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445566778999999999999987754222222 46667778888999999999999876 111122 2346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCcch
Q 048269 181 GWLIKGYCDVGDLIEASKIWNLMTDE----GFE--P-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD---LGLST 250 (465)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ 250 (465)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|.+.+++........ ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999988652 222 3 34566778889999999999999999987643221 01245
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHhcCCC-------HhhH
Q 048269 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD--NLTLS----SIIYGLLARGRLREAYKVVEEIEKPD-------ISLY 317 (465)
Q Consensus 251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~ 317 (465)
+..+...+...|++++|...+++.......++ ..... ..+..+...|+.++|...+++...+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788889999999999999998875321111 12111 23345779999999999999988722 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 318 HGLIKGLLRLRRAREATQVFREMIKRGCE-PTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE 396 (465)
Q Consensus 318 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (465)
..+...+...|++++|...+++.....-. +..... . ..+..+...+...|+.++|...++
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~---~----------------~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---N----------------RNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH---H----------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH---H----------------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66778899999999999999988643111 111100 0 122334566789999999999999
Q ss_pred HHHh
Q 048269 397 RVMN 400 (465)
Q Consensus 397 ~m~~ 400 (465)
+...
T Consensus 318 ~al~ 321 (373)
T 1hz4_A 318 DALK 321 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=6.3e-11 Score=117.56 Aligned_cols=166 Identities=10% Similarity=-0.044 Sum_probs=149.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+..+|+.+..++.+.|++++|++.|++..+.++.+..++..+...+.+.|++++|+..|++..+.. +-+...|+.+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 578899999999999999999999999999888888999999999999999999999999999875 5568899999999
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
|...|++++|++.|++...-.+-+..+|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999999884446678999999999999999999999999998863 235788999999999999999999
Q ss_pred HHHHHHHH
Q 048269 233 KVFQMMRV 240 (465)
Q Consensus 233 ~~~~~m~~ 240 (465)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.6e-10 Score=97.36 Aligned_cols=195 Identities=12% Similarity=0.037 Sum_probs=152.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
.|+..+......+.+.|++++|+..|++..+.++ ++...+..+..++...|++++|+..|+...+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4678899999999999999999999999998887 777788889999999999999999999998865 44677888899
Q ss_pred HHHHcCCCHHHHHHHHHHhhcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc---HHHHHHHHH
Q 048269 151 KTLCQRKLVVEAKYLILKLSEWIKPNE-------IAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS---IDVVDKMIE 220 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~ 220 (465)
.++...|++++|+..+++.....+.+. ..|..+...+...|++++|+..|+...+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999884445555 56888888899999999999999999876 454 567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048269 221 TFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRG 278 (465)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 278 (465)
++...| ...++.+...+ +.+...|.... ....+.+++|...+++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 776544 34445554432 21333443333 334566889999999988763
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=6.8e-10 Score=102.67 Aligned_cols=292 Identities=11% Similarity=0.006 Sum_probs=201.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCCC--HHhHHHHHHHH--HhcCChhHHH---------HHHHHHhhCCCC-C----hHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHN--SITFNRMVDII--GKSRNIDLFW---------ETLQEMGRRRLV-N----DKTFK 112 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~--~~~~~~l~~~~--~~~g~~~~a~---------~~~~~~~~~~~~-~----~~~~~ 112 (465)
.+.+.|..+++.+...-.....| ...|-.++..- .-.+.++.+. +.++.+.....+ + ...+.
T Consensus 26 ~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~ 105 (378)
T 3q15_A 26 FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLF 105 (378)
T ss_dssp TCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHH
Confidence 37788888888763322233223 33444444321 1112222222 555555432221 1 11344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC-CC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCC----CCHHhH
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGC-EY----SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIK----PNEIAY 180 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~----~~~~~~ 180 (465)
.....+...|++++|+..|+...+... .+ ...++..+..+|...|+++.|...+++.. .... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 456677889999999999999876311 12 24567888999999999999999999876 2211 125678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCCcchHH
Q 048269 181 GWLIKGYCDVGDLIEASKIWNLMTDE----GFE-PSIDVVDKMIETFFKINKDDEAMKVFQMMRVK---RMDDLGLSTYR 252 (465)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ 252 (465)
+.+...|...|++++|...|++..+. |-. ....++..+..+|...|++++|.+.+++.... ...|....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999988762 211 12457888999999999999999999988761 01332466788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhcC--CCHhhHHHHHHH
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRG----IEADNLTLSSIIYGLLARGR---LREAYKVVEEIEK--PDISLYHGLIKG 323 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~li~~ 323 (465)
.+...|.+.|++++|...+++..+.. .+.....+..+...|...++ +.+|...+++... .....+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 89999999999999999999987642 12223345556666777788 8889888888655 233456678889
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048269 324 LLRLRRAREATQVFREMIK 342 (465)
Q Consensus 324 ~~~~~~~~~a~~~~~~m~~ 342 (465)
|...|++++|...|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=6.8e-11 Score=104.27 Aligned_cols=155 Identities=10% Similarity=-0.000 Sum_probs=86.5
Q ss_pred hcCChhHHHHHHHHHhh-------CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHHHHHHHH
Q 048269 86 KSRNIDLFWETLQEMGR-------RRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDC------GC-EYSLEMLNKVV 150 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 150 (465)
..|++++|+..+++..+ .+. ....++..+...+...|++++|+..|+...+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666655543 121 23456666777777777777777777766543 11 22344566666
Q ss_pred HHHHcCCCHHHHHHHHHHhhcC--------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-cHHHH
Q 048269 151 KTLCQRKLVVEAKYLILKLSEW--------IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE------GFEP-SIDVV 215 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~ 215 (465)
.+|...|++++|...+++.... .+....++..+...|...|++++|...|++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666777777777766665411 1223445555566666666666666666665543 1111 23445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 216 DKMIETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 216 ~~li~~~~~~g~~~~A~~~~~~m~~ 240 (465)
..+..++...|++++|.+.+++...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555566666666665555543
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=2.5e-10 Score=113.27 Aligned_cols=166 Identities=8% Similarity=-0.023 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+..+++.+...+.+.|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++...-.+-+..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999875 55688999999999999999999999999884446678999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ 266 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 266 (465)
|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+. .|.+...+..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998863 236789999999999999999999999999876 56578899999999999999999
Q ss_pred HHHHHHHHHH
Q 048269 267 AYTMLEEMFK 276 (465)
Q Consensus 267 a~~~~~~m~~ 276 (465)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.2e-10 Score=102.70 Aligned_cols=201 Identities=14% Similarity=0.017 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhh-c------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 048269 142 SLEMLNKVVKTLCQRKLVVEAKYLILKLS-E------WI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE------G 207 (465)
Q Consensus 142 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 207 (465)
...++..+..+|...|++++|+..+++.. . +. +....++..+...|...|++++|...|.+..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34455566666666666666666666654 1 11 223445566666666666666666666665543 1
Q ss_pred C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 048269 208 F-EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK------RMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKR--- 277 (465)
Q Consensus 208 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 277 (465)
- +....++..+...+...|++++|.+.+++.... +..|....++..+...|...|++++|..++++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123445566666666666666666666665543 112223445566666666666666666666655532
Q ss_pred ----CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 278 ----GIEAD-NLTLSSIIYGLLARGR------LREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 278 ----~~~~~-~~~~~~li~~~~~~~~------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
...+. ...+..+...+...+. +..+...++.... .....+..+...|...|++++|..+|++.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11122 1222222222222111 2233333333322 2233455566666667777777777666553
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.5e-09 Score=92.55 Aligned_cols=195 Identities=9% Similarity=-0.101 Sum_probs=154.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHH
Q 048269 106 VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIK 185 (465)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~ 185 (465)
.++..+......+...|++++|+..|+...+...+++...+..+..++...|++++|++.|++.....+.+..++..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35678888999999999999999999999987633788888889999999999999999999988555667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCcH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CcchHHHHHH
Q 048269 186 GYCDVGDLIEASKIWNLMTDEGFEPSI-------DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDL--GLSTYRIVID 256 (465)
Q Consensus 186 ~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~ 256 (465)
.|...|++++|...|++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998863 2234 56888888899999999999999999865 664 4567777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 775543 444556555432 2444454433 3345668999999999887
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=1.5e-09 Score=96.31 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----
Q 048269 214 VVDKMIETFFKI-NKDDEAMKVFQMMRVKRMDDLG----LSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADN----- 283 (465)
Q Consensus 214 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----- 283 (465)
+++.+...|... |++++|++.|++..+......+ ..++..+...+...|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 444455555553 5555555555554432100000 223455555555555555555555555543222111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 284 -LTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 284 -~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
..+..+..++...|++++|...|++...
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344445555555666666666655554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=4.4e-09 Score=93.35 Aligned_cols=213 Identities=14% Similarity=-0.071 Sum_probs=141.3
Q ss_pred ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 048269 89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEYS-LEMLNKVVKTLCQRKLVVEAK 163 (465)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~ 163 (465)
++++|...|+.. ...+...|++++|+..|++..+. |-+++ ..+|+.+..+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366777766665 34566677777777777766542 21122 456777778888888888888
Q ss_pred HHHHHhh--cCCCCC----HHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCC----CCC-cHHHHHHHHHHHHhcCCHHHH
Q 048269 164 YLILKLS--EWIKPN----EIAYGWLIKGYCDV-GDLIEASKIWNLMTDEG----FEP-SIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 164 ~~~~~m~--~~~~~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A 231 (465)
..|++.. .....+ ..+++.+...|... |++++|+..|++..+.. -.+ ...++..+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 8887765 100111 35677888888886 99999999998887631 000 135688889999999999999
Q ss_pred HHHHHHHHHcCCCCCCcc-----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHH--hcCCHH
Q 048269 232 MKVFQMMRVKRMDDLGLS-----TYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-D---NLTLSSIIYGLL--ARGRLR 300 (465)
Q Consensus 232 ~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~~~~~ 300 (465)
++.|++............ .|..+..++...|++++|...|++..+..... + ...+..++.+|. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999887643321111 46677788889999999999999887542110 1 112344555554 456788
Q ss_pred HHHHHHHHhcCCCHh
Q 048269 301 EAYKVVEEIEKPDIS 315 (465)
Q Consensus 301 ~a~~~~~~~~~~~~~ 315 (465)
+|...|+.+...++.
T Consensus 258 ~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHTTSSCCCHH
T ss_pred HHHHHhccCCccHHH
Confidence 888888777664443
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.5e-09 Score=83.68 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
|..+...+...|++++|..+++++.+.++.+..++..+...+...|++++|...++.+...+ +.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555555555666666666655555444444555555555555555555555555555433 33344444555555555
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
|++++|.+.++++....+.+..++..+...+...|++++|...++.+.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555554422233344444444455555555555555544443
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=1.9e-09 Score=94.05 Aligned_cols=109 Identities=5% Similarity=-0.163 Sum_probs=84.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHH
Q 048269 72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYSLEML 146 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 146 (465)
.+...+..+...+.+.|++++|+..|+.+.+..+.+ ..++..+..++.+.|++++|+..|+...+... +.....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 367778888888999999999999999998877655 67888889999999999999999999888531 1224566
Q ss_pred HHHHHHHHc--------CCCHHHHHHHHHHhhcCCCCCHHhH
Q 048269 147 NKVVKTLCQ--------RKLVVEAKYLILKLSEWIKPNEIAY 180 (465)
Q Consensus 147 ~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~~~ 180 (465)
..+..++.. .|++++|+..|+++....+.+....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 777778887 8999999999998873333333333
No 90
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=3.8e-07 Score=89.63 Aligned_cols=218 Identities=10% Similarity=-0.032 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 048269 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM-KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEE 273 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 273 (465)
.+..+|++.... ++-+...|...+..+...|+.++|. ++|+..... .|.+...|-..+....+.|+++.|..+|+.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566666654 2335666766666666677777775 777776653 343555566666666777777777777776
Q ss_pred HHHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhcCC----CHhhHHHHHHHHHhc-
Q 048269 274 MFKRG---------IEAD------------NLTLSSIIYGLLARGRLREAYKVVEEIEKP----DISLYHGLIKGLLRL- 327 (465)
Q Consensus 274 m~~~~---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~- 327 (465)
+.... ..|+ ...|...+....+.|..+.|..+|....+. ....|-..+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 66431 0121 234666666666667777777777766541 222232222222222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccC-----------CCCCC---CchHHHHHHHHHHHhcCCHHHHHH
Q 048269 328 RRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRG-----------RKGPD---PLVNFDTIFVGGLVKAGKSLDAAK 393 (465)
Q Consensus 328 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----------~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 393 (465)
++.+.|..+|+..++. .+-+...+...+......++ ....+ -....|..++..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3467777777777655 22233333333333322222 11111 134578888888899999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHh
Q 048269 394 YVERVMNRGVEVPRFDYNKFLHYYS 418 (465)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~ 418 (465)
+.+++.+. .|+......+..-|.
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHHHHh--CCCCcHHHHHHHHhc
Confidence 99999984 566555555555553
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=2.8e-09 Score=89.39 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=59.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKI----------------ALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
...+......+.+.|++++|+..|++..+.++.+...+.. +..++.+.|++++|+..|+...+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344445556677778888888887777665544444444 444455555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHH
Q 048269 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYC 188 (465)
Q Consensus 138 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~ 188 (465)
. +-+...+..+..++...|++++|+..|++...-.+.+..++..+...|.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2 2344444445555555555555555555544222334444444444443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=5.3e-08 Score=85.03 Aligned_cols=242 Identities=12% Similarity=0.019 Sum_probs=135.2
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV 160 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 160 (465)
+-..-.|++..++.-.. +... .....-..+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 33444566666665222 2222 1223333445666666666531 11133333333333322 222
Q ss_pred HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 161 EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF-EPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
|+..|++....-+++..++..+..++...|++++|++++......|- .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56667766632245555556777777777777777777777665542 1256667777777777777777777777776
Q ss_pred HcCCCCC----CcchHHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 240 VKRMDDL----GLSTYRIVIDW--MCKRG--KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 240 ~~~~~~~----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
+. .|. +..+...++.+ ....| +...|..+|+++... .|+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 220 13444445544 22223 777777777777654 34433334444477777777777777765543
Q ss_pred -------------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269 312 -------------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348 (465)
Q Consensus 312 -------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 348 (465)
.|..+...+|......|+ +|.++++++.+. .|+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCC
Confidence 244555344444444565 677777777754 454
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=6.9e-09 Score=79.78 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
++..+...+...|++++|+.+|+.+.+.. +.+...+..+...+...|++++|..+++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555666666666666666666665543 33455555566666666666666666666552224445555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 240 (465)
.|++++|.+.++.+.+.. +.+..++..+...+.+.|++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666655542 22345555555566666666666666655544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=5.3e-09 Score=91.19 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhcC---CCCCHHhH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS---LEMLNKVVKTLCQRKLVVEAKYLILKLSEW---IKPNEIAY 180 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~ 180 (465)
+...+..+...+.+.|++++|+..|+.+.+.. +.+ ...+..+..++.+.|++++|+..|++.... .+....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555555666666666666666666666542 222 445555666666666666666666665511 11223344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 048269 181 GWLIKGYCD--------VGDLIEASKIWNLMTDE 206 (465)
Q Consensus 181 ~~li~~~~~--------~g~~~~a~~~~~~m~~~ 206 (465)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455555555 55566666666655553
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=2.2e-08 Score=87.37 Aligned_cols=177 Identities=11% Similarity=0.021 Sum_probs=106.1
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh-cCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS-EWI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMT 204 (465)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 204 (465)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.. .+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566676666554 4455555566677777777777777777764 221 2455666677777777777777777777776
Q ss_pred HCCCCC-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 205 DEGFEP-----SIDVVDKMIETF--FKIN--KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 205 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
+. .| +..+...|..++ ...| ++.+|..+|+++.+. .| +..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FP-TWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 44 245555555552 2223 677777777777544 33 32233444446777777777777777554
Q ss_pred HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 276 KRG---------IEADNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 276 ~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
+.- -+-++.++..+|......|+ +|.++++++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 320 02245555455555555565 66677777666
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.1e-09 Score=107.12 Aligned_cols=152 Identities=7% Similarity=-0.084 Sum_probs=72.3
Q ss_pred HhcCChhHHHHHHHHHh--------hCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 85 GKSRNIDLFWETLQEMG--------RRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
...|++++|++.+++.. +..+.+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44455555555555554 3333344445555555555555555555555554432 23444444455555555
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 236 (465)
|++++|+..|++...-.+.+...+..+..+|.+.|++++ +..|++..+.. +-+...|..+..++.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555442223344444455555555555555 55555544432 1233444445555555555555555554
Q ss_pred HHH
Q 048269 237 MMR 239 (465)
Q Consensus 237 ~m~ 239 (465)
+..
T Consensus 559 ~al 561 (681)
T 2pzi_A 559 EVP 561 (681)
T ss_dssp TSC
T ss_pred hhc
Confidence 443
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=2.7e-08 Score=84.51 Aligned_cols=187 Identities=6% Similarity=-0.132 Sum_probs=124.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCH-HHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE-YSL-EMLN 147 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~ 147 (465)
++..+..+...+.+.|++++|+..|+++.+..+.+ ..++..+..++.+.|++++|+..|+.+.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45667777788888999999999999988765532 357788888999999999999999998875311 111 2343
Q ss_pred HHHHHHHc------------------CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048269 148 KVVKTLCQ------------------RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFE 209 (465)
Q Consensus 148 ~ll~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 209 (465)
.+..++.. .|+.++|+..|+++....|-+..++........ +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH------
Confidence 44444433 567788888888877444444443332211100 00010
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL---STYRIVIDWMCKRGKISQAYTMLEEMFKRGI 279 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 279 (465)
......+...+.+.|++++|...|+.+.+. .|.+. ..+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011235567788888999999988888876 44222 4677888888889999999988888877643
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=6.4e-09 Score=84.64 Aligned_cols=160 Identities=9% Similarity=-0.020 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHc
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT-LCQ 155 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ 155 (465)
+......+.+.|++++|...|++..+.++.+...+..+...+.+.|++++|+..|+...+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44455556666666666666666655555555566666666666666666666666655432 233322221111 111
Q ss_pred CCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHH
Q 048269 156 RKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 234 (465)
.+....|+..+++.....+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1112234444444442223344555555555555555555555555554432111 133444555555555555555555
Q ss_pred HHHH
Q 048269 235 FQMM 238 (465)
Q Consensus 235 ~~~m 238 (465)
|++.
T Consensus 167 y~~a 170 (176)
T 2r5s_A 167 YRRQ 170 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=9.6e-09 Score=83.58 Aligned_cols=163 Identities=9% Similarity=0.053 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG-YC 188 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~ 188 (465)
.+......+.+.|++++|+..|+...+.. +.+...+..+..++...|++++|+..+++.....+ +...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 45566777888888888888888877654 45677788888888888888888888888763223 44433332211 12
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
..++...|...++...+.. +-+...+..+..++...|++++|.+.|+++.+....+.+...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334677777776652 224677777888888888888888888887765332223457777778888888888888
Q ss_pred HHHHHHH
Q 048269 269 TMLEEMF 275 (465)
Q Consensus 269 ~~~~~m~ 275 (465)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=5.2e-09 Score=104.25 Aligned_cols=170 Identities=8% Similarity=-0.135 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHh--------hcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 048269 51 LSWRPVYLFFQYTQ--------KAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR 122 (465)
Q Consensus 51 ~~~~~a~~~f~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (465)
.+++.|++.|+.++ ...+ .+...+..+..++.+.|++++|++.|+++.+.++.+...|..+..++...|
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFS---ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCT---TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhhhhcccccccccc---cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 48899999999985 3333 377889999999999999999999999999988888999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
++++|+..|++..+.. +.+...+..+..++.+.|++++ ++.|++...-.+.+...|..+..++.+.|++++|++.|++
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999875 4567888999999999999999 9999998854577888999999999999999999999999
Q ss_pred HHHCCCCCc-HHHHHHHHHHHHhcCC
Q 048269 203 MTDEGFEPS-IDVVDKMIETFFKINK 227 (465)
Q Consensus 203 m~~~g~~~~-~~~~~~li~~~~~~g~ 227 (465)
..+. .|+ ...+..+..++...++
T Consensus 560 al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 560 VPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp SCTT--STTHHHHHHHHHHHTC----
T ss_pred hccc--CcccHHHHHHHHHHHHccCC
Confidence 8775 454 5677778888766555
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=3.1e-07 Score=81.00 Aligned_cols=220 Identities=5% Similarity=-0.084 Sum_probs=143.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCChHHHHHHHHHH----Hhc---C
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR--NIDLFWETLQEMGRRRLVNDKTFKIALMTL----AEV---R 122 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 122 (465)
..+.|+..++.++...|. +..+|+.--.++...| +++++++.++.+...++.+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 445778888777777766 6777777777777777 788888888887777776666666554444 444 6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH--HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC------HH
Q 048269 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV--EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD------LI 194 (465)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~------~~ 194 (465)
++++++.+++.+.+.. +-+-.+|+.-..++.+.|.++ +++++++++....+-|...|+.-.......+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 7777777777777754 556777777666666677766 77777777774445666677666655555555 66
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC-CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 048269 195 EASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE-AMKVFQMMRVKR-MDDLGLSTYRIVIDWMCKRGKISQAYTMLE 272 (465)
Q Consensus 195 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 272 (465)
++++.++.+.... +-|...|+-+-..+.+.|+... +.++..++...+ ..|.++..+..+..+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7777777666653 2356666666666666665333 444555444322 113355666667777777777777777777
Q ss_pred HHHH
Q 048269 273 EMFK 276 (465)
Q Consensus 273 ~m~~ 276 (465)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=2e-08 Score=84.07 Aligned_cols=74 Identities=9% Similarity=0.174 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMC 259 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 259 (465)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.+.|++..+. .|.+..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 4444555555555555555554432 123444555555555555555555555555443 3334444444444443
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.8e-08 Score=98.57 Aligned_cols=151 Identities=7% Similarity=-0.115 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+.+.|...|+.++...++ +...|..+...+.+.|++++|.+.+++..+.++.+..++..+...+...|++++|++.|
T Consensus 4 ~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -----------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445566666665333333 55666666666666666666666666666665555566666666666666666666666
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 048269 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---GDLIEASKIWNLMTDE 206 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 206 (465)
++..+.. +.+...+..+..++.+.|++++|.+.|++.....+.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666543 334556666666666666666666666665532344555666666666666 6666666666666554
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=3e-07 Score=81.11 Aligned_cols=219 Identities=7% Similarity=-0.048 Sum_probs=142.4
Q ss_pred CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----HcC---CC
Q 048269 88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR--ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL----CQR---KL 158 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~ 158 (465)
...++|+++++.+...++....+|+.-...+...+ +++++++.++.+.... +-+..+|+.--.++ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999999888888888888888888888 8999999998888764 44556666544444 444 67
Q ss_pred HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC------HHH
Q 048269 159 VVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLI--EASKIWNLMTDEGFEPSIDVVDKMIETFFKINK------DDE 230 (465)
Q Consensus 159 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~ 230 (465)
+++++.+++++....+.|..+|+.-.-.+.+.|.++ ++++.++.+.+... -|...|+.....+.+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 788888888877555667777777777777777776 77777777777643 356666666555555555 666
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQ-AYTMLEEMFKRG--IEADNLTLSSIIYGLLARGRLREAYKVVE 307 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 307 (465)
+++.++.+... .|.|...|+-+-..+.+.|+... +..+..++...+ -..+...+..+...|.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 77777666655 44466667666666666665332 334444443322 12244455555555555555555555555
Q ss_pred Hhc
Q 048269 308 EIE 310 (465)
Q Consensus 308 ~~~ 310 (465)
.+.
T Consensus 283 ~l~ 285 (306)
T 3dra_A 283 LLK 285 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=3.6e-08 Score=87.17 Aligned_cols=161 Identities=7% Similarity=-0.030 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHh-HHHHHHHHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIA-YGWLIKGYC 188 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~li~~~~ 188 (465)
.+..+...+.+.|++++|+..|+...+.. +-+...+..+..++.+.|++++|...++++... .|+... .......+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHHH
Confidence 34444444444555555555555444432 233444444444555555555555555544311 112211 111122233
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
..++.+.|...+++..+.. +.+...+..+...+...|++++|.+.|..+.+......+...+..++..+...|+.+.|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 4444444555555444432 223444555555555555555555555555544211111344555555555555555555
Q ss_pred HHHHH
Q 048269 269 TMLEE 273 (465)
Q Consensus 269 ~~~~~ 273 (465)
..|++
T Consensus 276 ~~~r~ 280 (287)
T 3qou_A 276 SXYRR 280 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=4e-07 Score=80.67 Aligned_cols=201 Identities=8% Similarity=0.011 Sum_probs=100.7
Q ss_pred hhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh--
Q 048269 31 SSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND-- 108 (465)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 108 (465)
+.-...|+...+..++..+..+++.-....... . ......+...+..+...|++++|.+.++...+......
T Consensus 38 e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~---~---~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~ 111 (293)
T 2qfc_A 38 ESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYS---D---IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEF 111 (293)
T ss_dssp HTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHH---H---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HCCCCCCCHHHHHHHHHHhCcCHHHHhcccccc---c---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhH
Confidence 333445677777777766665554433332221 0 01234455566677777777777777776665443221
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCC
Q 048269 109 ----KTFKIALMTLAEVRELKKMVNFFHIMNDCGC---EYS--LEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPN 176 (465)
Q Consensus 109 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~ 176 (465)
..+..+...+...|++++|+..++...+... .+. ..+++.+...|...|++++|...|++.. ...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~ 191 (293)
T 2qfc_A 112 QQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence 1223344445555666666666666554211 111 3355555666666666666666665544 111111
Q ss_pred ----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-cHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 048269 177 ----EIAYGWLIKGYCDVGDLIEASKIWNLMTDEG----FEP-SIDVVDKMIETFFKINKDDEA-MKVFQM 237 (465)
Q Consensus 177 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~ 237 (465)
..++..+...|...|++++|...+++..+.. ... -..+|..+..+|.+.|++++| ...++.
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1345555555555555555555555544321 000 134455555555555555555 443443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=4.6e-08 Score=86.47 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH-H
Q 048269 140 EYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK-M 218 (465)
Q Consensus 140 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-l 218 (465)
+.+...+..+...+...|++++|+..|++.....+.+...+..+...+.+.|++++|...++.+... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 3445556667777777888888888888777444666777777778888888888888888777654 344433222 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 048269 219 IETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA-DNLTLSSIIYGLLARG 297 (465)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~ 297 (465)
...+...++.+.|.+.+++.... .|.+...+..+...+...|++++|...|.++.+..... +...+..+...+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23355666777777777777765 45467777777788888888888888888777653321 2556777777777788
Q ss_pred CHHHHHHHHHHh
Q 048269 298 RLREAYKVVEEI 309 (465)
Q Consensus 298 ~~~~a~~~~~~~ 309 (465)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 777777766653
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=4e-09 Score=83.24 Aligned_cols=54 Identities=7% Similarity=-0.120 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269 114 ALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK 168 (465)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (465)
+...|.+.|++++|++.|+...+.. +-+..+|..+..+|...|++++|+..|++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 3333333333333333333333322 22333333333333333333333333333
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.93 E-value=9.6e-08 Score=81.06 Aligned_cols=186 Identities=9% Similarity=-0.053 Sum_probs=117.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCH---HhHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE-Y-SLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNE---IAYG 181 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~ 181 (465)
++..+..+...+.+.|++++|+..|+.+.+.... | ....+..+..++.+.|++++|+..|+++....+.+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888889999999999998875311 1 135677788888999999999999999872222222 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchH----------
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTY---------- 251 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------- 251 (465)
.+..++...|.. .+ ..|..+...+...|++++|.+.|+.+.+. .|.+..++
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444444432210 00 01112222233345555555555555543 33222222
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 252 -------RIVIDWMCKRGKISQAYTMLEEMFKRGIEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 252 -------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
..+...|.+.|++++|...|+++.+..... ....+..+..+|.+.|+.++|...++.+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 356788999999999999999998863221 125678889999999999999999998765
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=3.2e-08 Score=96.71 Aligned_cols=154 Identities=9% Similarity=-0.054 Sum_probs=111.5
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLI 166 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 166 (465)
.|++++|.+.+++..+.++.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4778888888888888777777888888888889999999999998888764 456778888888888899999999999
Q ss_pred HHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 048269 167 LKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI---NKDDEAMKVFQMMRVKR 242 (465)
Q Consensus 167 ~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 242 (465)
++.....+.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88874446677888888888999999999999998888763 23567788888888888 88999999988887763
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=4.8e-07 Score=80.20 Aligned_cols=159 Identities=8% Similarity=-0.071 Sum_probs=77.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChH------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HHHHHH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDK------TFKIALMTLAEVRELKKMVNFFHIMNDCGCE-YS----LEMLNK 148 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 148 (465)
.+..+...|++++|..++++..+....++. .+..+...+...+++++|+..|+...+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355666667777777776666554332211 2223444445555666666666666552211 11 224555
Q ss_pred HHHHHHcCCCHHHHHHHHHHhh---c---CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHHHHH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLS---E---WIKPN-EIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEP-SIDVVD 216 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~---~---~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~ 216 (465)
+..+|...|++++|+..|++.. . +..+. ..++..+...|.+.|++++|...+++..+. +..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5566666666666666665554 1 11111 124445555555555555555555544431 1111 134445
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHH
Q 048269 217 KMIETFFKINK-DDEAMKVFQMM 238 (465)
Q Consensus 217 ~li~~~~~~g~-~~~A~~~~~~m 238 (465)
.+..++.+.|+ +++|.+.+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555552 35555544443
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.88 E-value=2.9e-07 Score=77.23 Aligned_cols=92 Identities=10% Similarity=-0.008 Sum_probs=42.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC----CHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR----ELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
++..+..+...|...+++++|.+.|++..+.| ++.++..+...|.. + ++++|+..|+...+.| +...+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 45555555555555555555555555554443 23334444444444 3 4555555555444432 3334444
Q ss_pred HHHHHHc----CCCHHHHHHHHHHhh
Q 048269 149 VVKTLCQ----RKLVVEAKYLILKLS 170 (465)
Q Consensus 149 ll~~~~~----~~~~~~a~~~~~~m~ 170 (465)
|...|.. .+++++|+.+|++..
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 4444443 444444444444444
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=1.8e-08 Score=79.48 Aligned_cols=137 Identities=9% Similarity=0.033 Sum_probs=113.4
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF 131 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (465)
+.+.|+..|..++...+. +...+..+...|.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|
T Consensus 12 ~~e~ai~~~~~a~~~~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHSCSHHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 677888888887332222 56677789999999999999999999999999889999999999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH-HHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 132 HIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYL-ILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 132 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
+...+.. +-+..++..+..+|.+.|+.++|.+. +++...-.|-++.+|......+...|+
T Consensus 89 ~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999875 55788899999999999999877665 577664446677888877777777664
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=4.9e-07 Score=75.81 Aligned_cols=178 Identities=11% Similarity=-0.023 Sum_probs=147.4
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHH
Q 048269 92 LFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK----LVVEAKYLIL 167 (465)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 167 (465)
+|.+.|++..+.| ++.++..+...+...+++++|+..|+...+.| +...+..+...|.. + +.++|.++|+
T Consensus 4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4677888887775 56688889999999999999999999999865 67778888888887 6 8999999999
Q ss_pred HhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 048269 168 KLSEWIKPNEIAYGWLIKGYCD----VGDLIEASKIWNLMTDEGFE-PSIDVVDKMIETFFK----INKDDEAMKVFQMM 238 (465)
Q Consensus 168 ~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 238 (465)
+... ..+...+..|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .+++++|.+.|+..
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9873 3467788889888887 89999999999999987621 127788889999988 88999999999999
Q ss_pred HHcCCCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCCCC
Q 048269 239 RVKRMDDLGLSTYRIVIDWMCKR-G-----KISQAYTMLEEMFKRGIE 280 (465)
Q Consensus 239 ~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~~~ 280 (465)
.+.+ . +...+..|...|... | +.++|..+|+...+.|..
T Consensus 156 ~~~~--~-~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 156 SSLS--R-TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHTS--C-TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHcC--C-CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 8762 2 556788888888754 3 899999999999988753
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.84 E-value=1.1e-05 Score=76.79 Aligned_cols=354 Identities=11% Similarity=0.006 Sum_probs=218.7
Q ss_pred CHHHHHHHHhcCC-CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhC-C--CCChHHHH
Q 048269 38 THEFFLQICNNFP-LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRN-IDLFWETLQEMGRR-R--LVNDKTFK 112 (465)
Q Consensus 38 ~~~~~~~~l~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~--~~~~~~~~ 112 (465)
....+...+..++ ++.+.+..+|+.+ ... .|+...|...+....+.++ .+....+|+..... | +.+...|.
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~ifera-l~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRC-LKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-STT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHH-hcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 3455566666666 4889999999998 332 3699999999998888774 45677788877653 3 45677888
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-------------cCCCHHHHHHHHHHhhcCCC-
Q 048269 113 IALMTLA----EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC-------------QRKLVVEAKYLILKLSEWIK- 174 (465)
Q Consensus 113 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~~~~~~a~~~~~~m~~~~~- 174 (465)
..+..+. ..++.+.+..+|+.........-...|......-. ..+.+..|..+++++....+
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 8777654 34678889999999987422111222222221110 01223344555555441111
Q ss_pred CCHHhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 048269 175 PNEIAYGWLIKGYCDVG--D-----LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG 247 (465)
Q Consensus 175 ~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 247 (465)
.+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.++++..... |.+
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~ 245 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG 245 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence 13345655554432211 1 345778899888753 456888988888899999999999999999977 524
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC--
Q 048269 248 LSTYRIVIDWMCKRGKISQAYTMLEEMFKRG---------IEA---DNLTLSSIIYGLLARGRLREAYKVVEEIEKPD-- 313 (465)
Q Consensus 248 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-- 313 (465)
...|. .|+...+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|+....|.
T Consensus 246 ~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~ 318 (493)
T 2uy1_A 246 MFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVG 318 (493)
T ss_dssp SHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCC
T ss_pred HHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCC
Confidence 43332 23332222222 22222110 001 12446666777777888999999999993343
Q ss_pred HhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 048269 314 ISLYHGLIKGLL-RLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAA 392 (465)
Q Consensus 314 ~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 392 (465)
...|......-. ..++.+.|..+|+...+.- |+...+ |...+....+.|+.+.|.
T Consensus 319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~----------------------~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLL----------------------KEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHH----------------------HHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHH----------------------HHHHHHHHHHcCCHHHHH
Confidence 233322111111 2346999999999988752 332221 222344457889999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 393 KYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
.+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999973 2456788888777778999999998888774
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=2.1e-07 Score=74.42 Aligned_cols=94 Identities=3% Similarity=-0.166 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
.+..+...+...|++++|...|++..+..+.+..++..+...+...|++++|+..++...+.. +.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344455555555555555555555555444445555555555555555555555555555432 2344444455555555
Q ss_pred CCCHHHHHHHHHHhh
Q 048269 156 RKLVVEAKYLILKLS 170 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~ 170 (465)
.|++++|...|++..
T Consensus 94 ~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 94 LGKFRAALRDYETVV 108 (166)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 555555555555544
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=1.7e-07 Score=83.77 Aligned_cols=174 Identities=13% Similarity=0.047 Sum_probs=95.7
Q ss_pred cCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHcCCCHHH
Q 048269 87 SRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 87 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~ 161 (465)
.+++++|...|+.. ...|...|++++|...|.+..+. +-.. -..+|+.+..+|...|++++
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 94 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE 94 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 35555555555543 34566677777777777766542 1001 13356666677777777777
Q ss_pred HHHHHHHhh---cC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-cHHHHHHHHHHHHhcCCHHH
Q 048269 162 AKYLILKLS---EW-IKP--NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEP-SIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 162 a~~~~~~m~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~ 230 (465)
|+..|++.. .. -.+ -..++..+...|.. |++++|+..|++..+. |-.. ...++..+...|.+.|++++
T Consensus 95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 173 (307)
T 2ifu_A 95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173 (307)
T ss_dssp GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 777777654 11 011 13455566666666 7777777666665542 1000 13455666666666677777
Q ss_pred HHHHHHHHHHcC----CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 231 AMKVFQMMRVKR----MDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 231 A~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
|++.|++..... ..+....++..+..++...|++++|...|++..
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666655421 000001234444555555666666666666665
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=4.4e-06 Score=74.44 Aligned_cols=172 Identities=9% Similarity=-0.085 Sum_probs=104.8
Q ss_pred CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC-C-CHHHHHH
Q 048269 88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR-K-LVVEAKY 164 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~ 164 (465)
+..++|+++++.+...++.+..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-..++.+. + +.+++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 33456777777777666666666666666666666 4777777777776654 44556666655555544 4 6667777
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC-------HH
Q 048269 165 LILKLSEWIKPNEIAYGWLIKGYCDVGDLI--------EASKIWNLMTDEGFEPSIDVVDKMIETFFKINK-------DD 229 (465)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~ 229 (465)
+++++....+.|..+|+.-.-...+.|.++ ++++.++++.+... -|...|+-....+.+.++ ++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHH
Confidence 777766555556666665544444444444 66677776666542 356666666666666554 56
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCC
Q 048269 230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGK 263 (465)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~ 263 (465)
++++.+++.... .|.|...|+-+-..+.+.|.
T Consensus 226 eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 226 DELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 677777666654 44466666666555555554
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=3.3e-07 Score=69.06 Aligned_cols=113 Identities=12% Similarity=-0.039 Sum_probs=67.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
...+..+...+...|++++|.+.++++.+..+.+..++..+...+.+.|++++|+..|+.+.+.. +.+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45566666666667777777777766666555555566666666666666666666666665543 34455556666666
Q ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 154 CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
...|++++|...++++....+.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 6666666666666665522233444444444333
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=2.4e-07 Score=70.43 Aligned_cols=108 Identities=10% Similarity=-0.064 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 154 (465)
..+......+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|+..|+...+.. +.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3455556667777777777777777776666666677777777777777777777777766654 445666666667777
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHhHHHH
Q 048269 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWL 183 (465)
Q Consensus 155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 183 (465)
..|++++|++.|++...-.|-+...+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 77777777777776653234444444433
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=7.7e-07 Score=74.55 Aligned_cols=127 Identities=6% Similarity=-0.099 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ 155 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 155 (465)
.+..+...+...|++++|...|++... ++..++..+...+.+.|++++|+..|+...+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 345566677777888888888877642 356677777888888888888888888777654 4566777777778888
Q ss_pred CCCHHHHHHHHHHhhcCCCCCH----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 156 RKLVVEAKYLILKLSEWIKPNE----------------IAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 156 ~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
.|++++|+..|++.....+.+. ..+..+..+|...|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888877763223322 66777777777778888888888777765
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=6e-06 Score=73.59 Aligned_cols=222 Identities=7% Similarity=-0.019 Sum_probs=168.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc-C-CHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSR-NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV-R-ELKKM 127 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a 127 (465)
...+.|+++++.++...+. +..+|+.--.++...| .++++++.++.+...++.+..+|+.-...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3556799999999888877 8889999888888888 599999999999999998989999888888777 7 89999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHH--------HHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC-------
Q 048269 128 VNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVV--------EAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD------- 192 (465)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~------- 192 (465)
+++++.+.+.. +.|..+|+.-..++.+.|.++ ++++.++++....+-|..+|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999999875 668888887666666666565 89999999885567789999998888888876
Q ss_pred HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC----CCCCCc
Q 048269 193 LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD--------------------DEAMKVFQMMRVKR----MDDLGL 248 (465)
Q Consensus 193 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~----~~~~~~ 248 (465)
++++++.++.+.... +-|...|+-+-..+.+.|+. ....++..++...+ ..+.++
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 688999998888764 34777887776666666553 23333333333221 113366
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 249 STYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.....++..|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 77778888888888888888888887644
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=2.6e-07 Score=70.68 Aligned_cols=120 Identities=8% Similarity=-0.092 Sum_probs=77.7
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
..+...|..+...+.+.|++++|...|++..+..+.+..++..+...+...|++++|+..++...+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34566677777777777777777777777776666566677777777777777777777777766653 34566666666
Q ss_pred HHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC
Q 048269 151 KTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG 191 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 191 (465)
.++...|++++|.+.|++.....+.+...+..+...+...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 67777777777777777665222333444555555544433
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=9.7e-07 Score=73.92 Aligned_cols=89 Identities=13% Similarity=-0.057 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
.+...+...|++++|+..|+... .|+...+..+..++...|++++|+..|++.....+.+...+..+..+|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 33444444555555555554442 33444444455555555555555555554442223344444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 048269 193 LIEASKIWNLMTD 205 (465)
Q Consensus 193 ~~~a~~~~~~m~~ 205 (465)
+++|...|+...+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=5.2e-08 Score=85.78 Aligned_cols=97 Identities=5% Similarity=-0.113 Sum_probs=56.2
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+.+.|++++|+..|++..+..+.+...+..+..++.+.|++++|+..++...+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555666666666666666666655555555556666666666666666666666655543 3345555555555
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
+...|++++|+..|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666665555544
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=1.8e-06 Score=76.41 Aligned_cols=159 Identities=11% Similarity=0.094 Sum_probs=101.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----chHHH
Q 048269 183 LIKGYCDVGDLIEASKIWNLMTDEG-FEPSI----DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL----STYRI 253 (465)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~ 253 (465)
.+..+...|++++|...++...+.. ..|+. ..+..+...+...|++++|++.|++.........+. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677777777777777776532 12221 123345566666677788888777777643222121 25777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--------C-CHhhHH
Q 048269 254 VIDWMCKRGKISQAYTMLEEMFK----R-GIEA-DNLTLSSIIYGLLARGRLREAYKVVEEIEK--------P-DISLYH 318 (465)
Q Consensus 254 li~~~~~~~~~~~a~~~~~~m~~----~-~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~ 318 (465)
+...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|...+++..+ . -...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777788888888887777663 1 1111 123566777778888888888887777665 1 145677
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 048269 319 GLIKGLLRLRR-AREATQVFREMI 341 (465)
Q Consensus 319 ~li~~~~~~~~-~~~a~~~~~~m~ 341 (465)
.+..+|.+.|+ +++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 77777888884 588888877765
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=2.9e-07 Score=82.15 Aligned_cols=189 Identities=10% Similarity=0.001 Sum_probs=135.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCC----C--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHH
Q 048269 76 TFNRMVDIIGKSRNIDLFWETLQEMGRRRL----V--NDKTFKIALMTLAEVRELKKMVNFFHIMNDC----GCEY-SLE 144 (465)
Q Consensus 76 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 144 (465)
.|+.....|...|++++|...|.+..+... + ...+|..+...|.+.|++++|+..|++..+. |-.. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344456788899999999999988765322 1 1357888999999999999999999987653 2111 245
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh---cCCC-C--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCc-HH
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLS---EWIK-P--NEIAYGWLIKGYCDVGDLIEASKIWNLMTDE----GFEPS-ID 213 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~ 213 (465)
+++.+..+|.. |++++|+..|++.. .... + ...++..+...|.+.|++++|+..|++..+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67888889988 99999999999976 1111 1 1467888999999999999999999998763 22222 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcc-----hHHHHHHHHHhcCChHHHHH
Q 048269 214 VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLS-----TYRIVIDWMCKRGKISQAYT 269 (465)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~ 269 (465)
.+..+..++...|++++|...|++.. . .|.... ....++.++ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67777788888899999999999987 4 341111 233344444 4566655544
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=3.3e-07 Score=69.71 Aligned_cols=119 Identities=12% Similarity=-0.091 Sum_probs=66.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+...|++++|...|++.....+.+..++..+...+...|++++|+..++...+.. +.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344555556666666666666666666655555455556666666666666666666666655543 3345555555555
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD 192 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 192 (465)
+...|++++|...|++.....+.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666655552223344455555555544443
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=1.1e-06 Score=75.66 Aligned_cols=190 Identities=7% Similarity=-0.144 Sum_probs=101.4
Q ss_pred hcCChhHHHHHHHHHhhCCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHhhh------------CCCC------
Q 048269 86 KSRNIDLFWETLQEMGRRRLVNDKTFKIA-------LMTLAEVRELKKMVNFFHIMND------------CGCE------ 140 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~------ 140 (465)
..++...|.+.|.++.+.++-....|..+ ...+.+.++..+++..+..-.+ .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35666666666666666666555566555 3444444444555544444433 1100
Q ss_pred --CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHH
Q 048269 141 --YSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVD 216 (465)
Q Consensus 141 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~ 216 (465)
--...+-.+...+...|++++|.++|+.+..+.+-+. ....+...+.+.+++++|+..|+...+.. .| ....+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 0012233344556666667777666666653222222 44445556666667777766666443321 11 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048269 217 KMIETFFKINKDDEAMKVFQMMRVKRMDDL-GLSTYRIVIDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 217 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
.+..++.+.|++++|++.|++.......|. ..........++.+.|+.++|..+|+++...
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666777777777666653322131 1224445555666666667777766666654
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=3e-06 Score=75.01 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=104.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----cc
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-----IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLG----LS 249 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~ 249 (465)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|.+.+++.........+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667777777777777776665422111 122334555566777888888888777643221111 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--CC-------H
Q 048269 250 TYRIVIDWMCKRGKISQAYTMLEEMFK---R-GIEA--DNLTLSSIIYGLLARGRLREAYKVVEEIEK--PD-------I 314 (465)
Q Consensus 250 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-------~ 314 (465)
+++.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|...+++..+ ++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777788888888888888877662 1 1111 124677777788888888888888877655 11 4
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048269 315 SLYHGLIKGLLRLRRAREA-TQVFREMI 341 (465)
Q Consensus 315 ~~~~~li~~~~~~~~~~~a-~~~~~~m~ 341 (465)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677777788888888888 66676654
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=3.3e-07 Score=78.92 Aligned_cols=190 Identities=7% Similarity=-0.080 Sum_probs=147.4
Q ss_pred CCCChhHHHHHHHHHhhcCCCCCCCHHhHHHH-------HHHHHhcCChhHHHHHHHHHhh------------CCC----
Q 048269 49 FPLSWRPVYLFFQYTQKAQPCFAHNSITFNRM-------VDIIGKSRNIDLFWETLQEMGR------------RRL---- 105 (465)
Q Consensus 49 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~------------~~~---- 105 (465)
.+.++..|++.|..++..+|+ ....|+.+ ..++.+.++..++...+..-.. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 456899999999999888888 88999888 5777777777777777766555 221
Q ss_pred ----CC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC--HH
Q 048269 106 ----VN-DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN--EI 178 (465)
Q Consensus 106 ----~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~ 178 (465)
.+ ..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+....-..|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 01 2345567788899999999999999998754 444366666778999999999999998665321221 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD 245 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 245 (465)
.+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++... .|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 67888999999999999999999998654325 3456777888899999999999999999987 55
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=9.5e-07 Score=70.51 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
.+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+.+..++..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45566666677777777777777766643 34566666666667777777777777776663334556666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFKINKDDEAMKVFQMM 238 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m 238 (465)
.|++++|...|++..+.. +.+...+ ..++..+.+.|++++|.+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 677777777666666542 1133333 22333355566666666666544
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=1.1e-07 Score=77.19 Aligned_cols=120 Identities=12% Similarity=0.052 Sum_probs=64.4
Q ss_pred hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHcCCCH--HHH
Q 048269 86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT-LCQRKLV--VEA 162 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a 162 (465)
..|++++|...++...+.++.+..++..+...+...|++++|+..|+...+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34555566666666555555555556666666666666666666666555543 2344455555555 4455555 666
Q ss_pred HHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 163 KYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 163 ~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
...+++.....+.+...+..+...|...|++++|...|+.+.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666555223344555555555566666666666666655554
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=4.1e-07 Score=71.37 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+...+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|+..|++...-.+.+...|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34456666666666677777777776666654 44566666666666666777777776666663334555666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048269 187 YCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~ 206 (465)
|...|++++|...|+...+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66777777777777666664
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=1.7e-07 Score=73.60 Aligned_cols=97 Identities=6% Similarity=-0.102 Sum_probs=88.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+.+.|++++|+..|+.....++.+...|..+..++...|++++|+..|+...+.. +.+...|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 566788888899999999999999999999998889999999999999999999999999999875 5567888899999
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
|...|++++|+..|++..
T Consensus 114 ~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999999987
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=4.3e-07 Score=75.36 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=21.6
Q ss_pred hcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 86 KSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
..|++++|.++++.+.........++..+...+...|++++|+..+++..+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 345555555533333221112234445555555555555555555554443
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=1.1e-06 Score=72.84 Aligned_cols=156 Identities=8% Similarity=-0.108 Sum_probs=84.2
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc------CCCCCHHhHHHHHHHHHhcCCH
Q 048269 120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE------WIKPNEIAYGWLIKGYCDVGDL 193 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~------~~~~~~~~~~~li~~~~~~g~~ 193 (465)
..|++++|.+.++.+... ......++..+...+...|++++|...+++... ..+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443331 123445566666666666777777666666541 1122344556666666666777
Q ss_pred HHHHHHHHHHHHC----CCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCcchHHHHHHHHHhcCC
Q 048269 194 IEASKIWNLMTDE----GFEP--SIDVVDKMIETFFKINKDDEAMKVFQMMRVK----RMDDLGLSTYRIVIDWMCKRGK 263 (465)
Q Consensus 194 ~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~ 263 (465)
++|...+++..+. |-.+ ....+..+...+...|++++|.+.+++.... +.......++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7766666665442 2111 2344566666666667777776666665421 1111012335566666666777
Q ss_pred hHHHHHHHHHHHH
Q 048269 264 ISQAYTMLEEMFK 276 (465)
Q Consensus 264 ~~~a~~~~~~m~~ 276 (465)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665553
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.63 E-value=0.00018 Score=68.36 Aligned_cols=310 Identities=7% Similarity=-0.011 Sum_probs=188.2
Q ss_pred CChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHhhh-CCC-CCCHHHHHHHHHHHHc----CCCHH
Q 048269 88 RNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE-LKKMVNFFHIMND-CGC-EYSLEMLNKVVKTLCQ----RKLVV 160 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~-~~~-~~~~~~~~~ll~~~~~----~~~~~ 160 (465)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|. ..+...|...+..+.. .++.+
T Consensus 28 ~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 8899999999999874 4688889888888877764 4556778887665 343 3467888888876543 46788
Q ss_pred HHHHHHHHhhcCCCCC--HHhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 048269 161 EAKYLILKLSEWIKPN--EIAYGWLIKGYC-------------DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI 225 (465)
Q Consensus 161 ~a~~~~~~m~~~~~~~--~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 225 (465)
.+.++|++... +++. ...|......-. ..+.+..|..+++.+...--..+...|...+..-...
T Consensus 107 ~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 107 KIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 89999999874 2222 112221111100 0122333444444443210001344666655543322
Q ss_pred C--C-----HHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048269 226 N--K-----DDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298 (465)
Q Consensus 226 g--~-----~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 298 (465)
+ - .+.+..+|+++... .|.+...|-..+.-+.+.|+.+.|..++++.... +.+...+. .|....+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 1 1 34567889988875 3436788888888889999999999999999987 33333222 2222211
Q ss_pred HHHHH-HHHHHhc----------C--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCC
Q 048269 299 LREAY-KVVEEIE----------K--PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGR 365 (465)
Q Consensus 299 ~~~a~-~~~~~~~----------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 365 (465)
.++.. .+.+... . .....|...+....+.++.+.|..+|.+. ... ..+...|...
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~---------- 325 (493)
T 2uy1_A 258 EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYC---------- 325 (493)
T ss_dssp CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHH----------
T ss_pred hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHH----------
Confidence 11211 1221110 0 12245666667777788899999999998 321 1233333211
Q ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHH
Q 048269 366 KGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKL 433 (465)
Q Consensus 366 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (465)
+.+.. ...++.+.|..+|+...+. . |+ ...|...++-..+.|+.+.|..+++++
T Consensus 326 -----------A~lE~-~~~~d~~~ar~ife~al~~-~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 326 -----------AFIEY-YATGSRATPYNIFSSGLLK-H-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp -----------HHHHH-HHHCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred -----------HHHHH-HHCCChHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 2234799999999999874 2 43 446666777777889999999999887
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=7.6e-07 Score=69.78 Aligned_cols=97 Identities=7% Similarity=-0.090 Sum_probs=69.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+.+.|++++|+..|+.....++.+...|..+..++...|++++|+..|+...... +.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 455566667777777777777777777777776677777777777777777777777777777654 4455666667777
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
|...|++++|+..|++..
T Consensus 99 ~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 777777777777777765
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.8e-06 Score=64.95 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
++..+...+...|++++|++.|+.+.+.. +.+..++..+..++...|++++|..+++++....+.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444444555555555555555544432 22344444444444444455555444444442223334444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTD 205 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~ 205 (465)
.|++++|...|+.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444443
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=1.1e-06 Score=66.79 Aligned_cols=90 Identities=8% Similarity=-0.077 Sum_probs=35.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKD 228 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 228 (465)
....|.+.|++++|++.|++.....+.+..+|..+..+|.+.|++++|+..|+...+.. +.+...|..+..++...|++
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCH
Confidence 33334444444444444444332223333444444444444444444444444443321 11233344444444444444
Q ss_pred HHHHHHHHHHH
Q 048269 229 DEAMKVFQMMR 239 (465)
Q Consensus 229 ~~A~~~~~~m~ 239 (465)
++|.+.|++..
T Consensus 98 ~~A~~~~~~al 108 (126)
T 4gco_A 98 SKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=1.9e-07 Score=73.25 Aligned_cols=97 Identities=8% Similarity=-0.126 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHH
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGY 187 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 187 (465)
...+..+...+.+.|++++|+..|+...... +.+...|..+..+|...|++++|+..|++.....+.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3344444555555555555555555554433 334444444555555555555555555554422233444444455555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 048269 188 CDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 188 ~~~g~~~~a~~~~~~m~~ 205 (465)
...|++++|...|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555544443
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-06 Score=66.44 Aligned_cols=92 Identities=12% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269 147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 226 (465)
..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHh
Confidence 3333333333333444333333332222233333333333334444444444443333321 112333333444444444
Q ss_pred CHHHHHHHHHHHH
Q 048269 227 KDDEAMKVFQMMR 239 (465)
Q Consensus 227 ~~~~A~~~~~~m~ 239 (465)
++++|.+.|++..
T Consensus 99 ~~~~A~~~~~~~~ 111 (133)
T 2lni_A 99 DYTKAMDVYQKAL 111 (133)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444433
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=4.2e-07 Score=79.91 Aligned_cols=97 Identities=12% Similarity=-0.050 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269 143 LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF 222 (465)
Q Consensus 143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 222 (465)
...+..+...+.+.|++++|+..|++.....+.+...|..+..+|.+.|++++|...++...+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444455555555555555555555542223345555555555555555555555555555432 22345555555556
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 048269 223 FKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~ 240 (465)
...|++++|.+.|+...+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655544
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=2.5e-06 Score=63.38 Aligned_cols=108 Identities=12% Similarity=-0.145 Sum_probs=69.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
...+..+...+...|++++|...|+......+.+...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45566666777777777777777777766665566666777777777777777777777766653 33556666666666
Q ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHhHHH
Q 048269 154 CQRKLVVEAKYLILKLSEWIKPNEIAYGW 182 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 182 (465)
...|++++|.+.+++.....+.+...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 67777777777776665333334444433
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=2.2e-06 Score=65.02 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
.+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444555555555555555544432 22344444444444445555555555444442223334444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTD 205 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~ 205 (465)
.|++++|...|+...+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=3.6e-07 Score=71.15 Aligned_cols=97 Identities=5% Similarity=-0.184 Sum_probs=74.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+.+.|++++|...|+.....++.+...|..+..++.+.|++++|+..|+...+.. +.+...+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 345556666777788888888888888887777777778888888888888888888888877764 4556667777778
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
+...|++++|...|++..
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 888888888888887766
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.2e-06 Score=79.27 Aligned_cols=87 Identities=10% Similarity=-0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF 223 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 223 (465)
..|..+..+|.+.|++++|+..+++...-.+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 4444455555555555555555555442223344555555555555555555555555554432 123444455555555
Q ss_pred hcCCHHHH
Q 048269 224 KINKDDEA 231 (465)
Q Consensus 224 ~~g~~~~A 231 (465)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=1.2e-07 Score=85.78 Aligned_cols=96 Identities=10% Similarity=-0.067 Sum_probs=73.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256 (465)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 256 (465)
..+|..+..+|.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..+. .|.+...+..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 4677788888888888888888888887763 336777888888888888888888888888765 4546777888888
Q ss_pred HHHhcCChHHH-HHHHHHHH
Q 048269 257 WMCKRGKISQA-YTMLEEMF 275 (465)
Q Consensus 257 ~~~~~~~~~~a-~~~~~~m~ 275 (465)
++.+.|+.+++ ...|+.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888777 44555554
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.6e-06 Score=65.74 Aligned_cols=96 Identities=7% Similarity=-0.098 Sum_probs=63.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
...|..+...+.+.|++++|+..|++..+.++.+...|..+..++.+.|++++|+..|+...+.. +.+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34556666666777777777777777766666666667777777777777777777777666654 34556666666666
Q ss_pred HcCCCHHHHHHHHHHhh
Q 048269 154 CQRKLVVEAKYLILKLS 170 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~ 170 (465)
...|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 66677777766666655
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.54 E-value=9.9e-07 Score=71.49 Aligned_cols=120 Identities=8% Similarity=-0.022 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH-HHhcCCH--HHH
Q 048269 120 EVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG-YCDVGDL--IEA 196 (465)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~--~~a 196 (465)
..|++++|+..++...+.. +.+...+..+..+|...|++++|+..|++.....+.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4566666777776666543 44566666677777777777777777777663234455666666666 5566666 777
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 197 SKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 197 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
...|+...+.. +.+...+..+...+...|++++|...|+.....
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777766643 224556666666677777777777777766654
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=3.1e-06 Score=67.54 Aligned_cols=97 Identities=6% Similarity=-0.156 Sum_probs=81.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...|..+...+.+.|++++|++.|++..+.++.+...|..+..++.+.|++++|+..|+...+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 566778888888888999999999998888877778888888888888999999999988888765 4567788888888
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048269 153 LCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~ 170 (465)
|...|++++|+..|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 888888888888888877
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=7.4e-06 Score=62.89 Aligned_cols=98 Identities=5% Similarity=-0.115 Sum_probs=76.4
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 048269 72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVK 151 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 151 (465)
.+...|..+...+...|++++|...|+.....++.+..++..+..++...|++++|+..++...+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3677778888888888888888888888877777677778888888888888888888888877754 446677777777
Q ss_pred HHHcCCCHHHHHHHHHHhh
Q 048269 152 TLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 152 ~~~~~~~~~~a~~~~~~m~ 170 (465)
++...|++++|+..|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 8888888888888887765
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=2e-06 Score=63.26 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=68.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY--SLEMLNKVV 150 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll 150 (465)
+...+..+...+.+.|++++|...|++..+..+.+..++..+...+...|++++|+..|+...+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445566677777777777777777777776666666677777777777777777777777776653 33 466666777
Q ss_pred HHHHcC-CCHHHHHHHHHHhh
Q 048269 151 KTLCQR-KLVVEAKYLILKLS 170 (465)
Q Consensus 151 ~~~~~~-~~~~~a~~~~~~m~ 170 (465)
.++... |++++|.+.+++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 777777 77777777777766
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=1.2e-06 Score=68.09 Aligned_cols=92 Identities=12% Similarity=-0.080 Sum_probs=42.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 227 (465)
.+...+.+.|++++|+..|++.....+.+...|..+..+|...|++++|+..|+...+.. +-+...+..+..++...|+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 334444444444555444444442223344444444444455555555555555444432 1233344444445555555
Q ss_pred HHHHHHHHHHHHH
Q 048269 228 DDEAMKVFQMMRV 240 (465)
Q Consensus 228 ~~~A~~~~~~m~~ 240 (465)
+++|.+.|+....
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.44 E-value=0.00012 Score=64.93 Aligned_cols=188 Identities=9% Similarity=-0.040 Sum_probs=120.4
Q ss_pred hcCChh-HHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269 86 KSRNID-LFWETLQEMGRRRLVNDKTFKIALMTLAEVRE----------LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154 (465)
Q Consensus 86 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 154 (465)
+.|.++ +|+++++.+...++.+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 455555 68888888888877666666654444433332 567777777777654 556777777666666
Q ss_pred cCC--CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc------
Q 048269 155 QRK--LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGD-LIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI------ 225 (465)
Q Consensus 155 ~~~--~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------ 225 (465)
+.+ .+++++.+++++....+-|..+|+.-.-.....|. ++++++.++.+.+..+ -|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccc
Confidence 666 37788888888775456677777776666667776 5778888887777642 3666666655555444
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc-----------CChHHHHHHHHHHHHC
Q 048269 226 --------NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR-----------GKISQAYTMLEEMFKR 277 (465)
Q Consensus 226 --------g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~ 277 (465)
+.++++++.+...... .|.|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777655 455666776554444443 2345555555555544
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=2.3e-07 Score=76.89 Aligned_cols=95 Identities=15% Similarity=-0.082 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCC
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS----------------LEMLNKVVKTLCQRKLVVEAKYLILKLSEWI 173 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 173 (465)
.+..+...+.+.|++++|+..|+...+.. +.+ ...+..+..+|...|++++|+..+++.....
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45555556666666666666666665532 111 1334444444444455555555544444222
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
+.+...+..+..+|...|++++|...|+...+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=3e-06 Score=70.08 Aligned_cols=132 Identities=10% Similarity=-0.054 Sum_probs=103.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVND----------------KTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
....+..+...+.+.|++++|+..|++..+..+.+. .++..+..++.+.|++++|+..++...+
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345677788899999999999999999988665333 7888899999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048269 137 CGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEAS-KIWNLMTD 205 (465)
Q Consensus 137 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~ 205 (465)
.. +.+...+..+..+|...|++++|+..|++.....+.+...+..+..++...++.+++. ..|..+..
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 74 5678889999999999999999999999987444667788888888887777776666 45555544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=8.2e-06 Score=63.49 Aligned_cols=111 Identities=6% Similarity=-0.101 Sum_probs=73.7
Q ss_pred CCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 048269 72 HNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVN---DKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNK 148 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 148 (465)
.+...+..+...+...|++++|.+.|++..+..+.+ ..++..+..++...|++++|+..++...+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 366777777777778888888888888777665543 5566677777777777777777777766653 335666666
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHH
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWL 183 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~l 183 (465)
+..++...|++++|...|++.....+.+...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 66777777777777777777653223344444333
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=1.5e-05 Score=74.68 Aligned_cols=196 Identities=9% Similarity=-0.029 Sum_probs=140.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCC-----------------hHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCC
Q 048269 81 VDIIGKSRNIDLFWETLQEMGRRRLVN-----------------DKTFKIALMTLAEVRELKKMVNFFHIMNDCG-CEYS 142 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 142 (465)
.+.+.+.|++++|++.|..+.+..... ..++..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 456788899999999999988765421 1247788999999999999999999876621 1122
Q ss_pred H----HHHHHHHHHHHcCCCHHHHHHHHHHhh-----cCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 048269 143 L----EMLNKVVKTLCQRKLVVEAKYLILKLS-----EWI-KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE--GF-- 208 (465)
Q Consensus 143 ~----~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-- 208 (465)
. .+.+.+-..+...|+.++|.+++++.. .+. ..-..++..|...|...|++++|..++..+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 223334444556789999999998865 222 223567888999999999999999999988652 11
Q ss_pred CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCC--cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048269 209 EP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKR--MD-DLG--LSTYRIVIDWMCKRGKISQAYTMLEEMFK 276 (465)
Q Consensus 209 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 276 (465)
.+ ...++..++..|...|++++|..+++...... .. |+. ...+..+...+...++++.|...|.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 35678899999999999999999998875431 11 101 23456666777788999999988877654
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.3e-05 Score=60.59 Aligned_cols=95 Identities=12% Similarity=-0.085 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
.+..+...+.+.|++++|+..|+...+.. +.+...|..+..++.+.|++++|+..+++.....+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555566666666666666666666543 34555666666666666666666666666553334455566666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTD 205 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~ 205 (465)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 6666666666666554
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.37 E-value=1.9e-05 Score=58.46 Aligned_cols=95 Identities=7% Similarity=-0.074 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
.+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.....+.+...+..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444444555555555555555544432 22344444444444444555555555544442223334444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTD 205 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~ 205 (465)
.|++++|...++...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=0.00018 Score=63.84 Aligned_cols=217 Identities=6% Similarity=-0.091 Sum_probs=160.2
Q ss_pred ChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRN----------IDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
-.+.|+..++.++...|. +..+|+.--.++...+. +++++.+++.+...++.+..+|+.-...+.+.
T Consensus 45 ~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 45 LDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp CSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 456799999998776666 77778766555554443 67899999999999888888999888888888
Q ss_pred C--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc--------
Q 048269 122 R--ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL-VVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV-------- 190 (465)
Q Consensus 122 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~-------- 190 (465)
+ .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.++++....+-|..+|+.....+.+.
T Consensus 122 ~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 122 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred CcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8 4899999999999876 6788888888888888888 68999999999855577888888777766655
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCCcchHHH
Q 048269 191 ------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI-----------NKDDEAMKVFQMMRVKRMDDLGLSTYRI 253 (465)
Q Consensus 191 ------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 253 (465)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+. .| +. .|..
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p-d~-~w~l 275 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP-EN-KWCL 275 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT-TC-HHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc-cc-chHH
Confidence 45788999999888763 34677776554444444 4578899999999876 56 32 3432
Q ss_pred HHHHH-----HhcCChHHHHHHHHHHHHC
Q 048269 254 VIDWM-----CKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 254 li~~~-----~~~~~~~~a~~~~~~m~~~ 277 (465)
+..+. ...+..+++...+.++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22211 1345566677777777654
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=4.9e-06 Score=63.06 Aligned_cols=96 Identities=8% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYS----LEMLNK 148 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 148 (465)
..|..+...+...|++++|...|++..+..+.+..++..+...+...|++++|+..++...+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555566666666666666666666655555555566666666666666666666665554320 011 444445
Q ss_pred HHHHHHcCCCHHHHHHHHHHhh
Q 048269 149 VVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
+..++...|++++|.+.|++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555555555555544
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1.4e-05 Score=60.57 Aligned_cols=93 Identities=9% Similarity=-0.147 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVND---KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS---LEMLNKVV 150 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 150 (465)
+..+...+.+.|++++|...|+.+.+..+.+. .++..+..++.+.|++++|+..|+...+.. +.+ ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 33455566667777777777777666555333 466666667777777777777777666643 222 45556666
Q ss_pred HHHHcCCCHHHHHHHHHHhh
Q 048269 151 KTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~m~ 170 (465)
.++...|++++|...|+++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 66666777777777776665
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=2.3e-05 Score=59.32 Aligned_cols=55 Identities=9% Similarity=0.022 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK 168 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (465)
.+...+.+.|++++|+..|++..+.. +.+...|+.+..+|...|++++|++.+++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 33444444444444444444444332 22333444444444444444444444444
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=8.1e-06 Score=59.87 Aligned_cols=98 Identities=15% Similarity=-0.020 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--cHHHHHHHHH
Q 048269 143 LEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP--SIDVVDKMIE 220 (465)
Q Consensus 143 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~ 220 (465)
...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...|++..+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 33444555556666666666666666553234455566666666666666666666666666542 12 3556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHHc
Q 048269 221 TFFKI-NKDDEAMKVFQMMRVK 241 (465)
Q Consensus 221 ~~~~~-g~~~~A~~~~~~m~~~ 241 (465)
++.+. |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6666666666666654
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=5.2e-06 Score=62.93 Aligned_cols=97 Identities=10% Similarity=0.077 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcC---CCCC----HHhHH
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEW---IKPN----EIAYG 181 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~ 181 (465)
..+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.... ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666677777777776666543 345556666666666666666666666665511 1112 45555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 182 WLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
.+...+...|++++|.+.|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5666666666666666666666554
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.5e-05 Score=72.21 Aligned_cols=167 Identities=8% Similarity=-0.126 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhcC---------CCHhh
Q 048269 251 YRIVIDWMCKRGKISQAYTMLEEMFKRG-IEADNL----TLSSIIYGLLARGRLREAYKVVEEIEK---------PDISL 316 (465)
Q Consensus 251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~ 316 (465)
+..+...|...|++++|.+.+..+...- ..++.. +.+.+-..+...|+.+.|..+++.... .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555443210 001111 111122222334555555555554433 11234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 317 YHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVE 396 (465)
Q Consensus 317 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 396 (465)
+..+...|...|++++|..++++....-...+... ....+|..++..|...|++++|..+++
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP------------------SLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch------------------hHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 45555666666666666666665543211110000 001123444555566666666666666
Q ss_pred HHHhC--CCC-C-C--HhhHHHHHHHHhhccchHHHHHHHHHHHH
Q 048269 397 RVMNR--GVE-V-P--RFDYNKFLHYYSNEEGVVMFEEVGKKLRE 435 (465)
Q Consensus 397 ~m~~~--~~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (465)
+.... .+. | . ...+..+...+...|++++|...+.+..+
T Consensus 200 ~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 200 AARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 65431 111 1 1 12344445555556666666666555543
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=6.1e-06 Score=61.99 Aligned_cols=93 Identities=6% Similarity=-0.108 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR 156 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 156 (465)
+..+...+.+.|++++|+..|++..+.++.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44556667777777777777777777776667777777777777777777777777777654 34566667777777777
Q ss_pred CCHHHHHHHHHHhh
Q 048269 157 KLVVEAKYLILKLS 170 (465)
Q Consensus 157 ~~~~~a~~~~~~m~ 170 (465)
|++++|+..+++..
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777777765
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.4e-05 Score=60.49 Aligned_cols=106 Identities=8% Similarity=-0.007 Sum_probs=81.6
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGC--EYS----LEMLN 147 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 147 (465)
...+..+-..+.+.|++++|++.|++..+.++.+..+|..+..++.+.|++++|++.++...+... .++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778889999999999999999999998888888999999999999999999999998876421 111 23566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhH
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAY 180 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 180 (465)
.+..++...|++++|++.|++... ..||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~-~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS-EFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-hCcCHHHH
Confidence 666777777788888877777652 13454433
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.29 E-value=1.7e-05 Score=60.79 Aligned_cols=98 Identities=9% Similarity=-0.136 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
+...+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34445555555555555555555555554433 23344455555555555555555555555442223344444555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 048269 187 YCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~ 205 (465)
+...|++++|...|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555544443
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=1.3e-05 Score=63.81 Aligned_cols=97 Identities=14% Similarity=0.017 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF 223 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 223 (465)
..+..+...+.+.|++++|+..|++.....+.+...|..+..+|.+.|++++|+..|+...+.. +-+...|..+..++.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444444455555555555555555442223344555555555555555555555555555432 123445555555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048269 224 KINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 224 ~~g~~~~A~~~~~~m~~~ 241 (465)
..|++++|.+.|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=4.2e-05 Score=59.30 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 214 VVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
.+..+..++...|++++|.+.|++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333444444444444443333
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.16 E-value=1.6e-05 Score=59.58 Aligned_cols=94 Identities=7% Similarity=-0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV 190 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 190 (465)
+..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++...-.+.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344455555566666666666555543 334555555555555566666666666555532234455555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 048269 191 GDLIEASKIWNLMTD 205 (465)
Q Consensus 191 g~~~~a~~~~~~m~~ 205 (465)
|++++|...|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.8e-05 Score=73.42 Aligned_cols=88 Identities=8% Similarity=-0.112 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFF 223 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 223 (465)
..|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555555555555555442223444555555555555555555555555554431 112334444445555
Q ss_pred hcCCHHHHH
Q 048269 224 KINKDDEAM 232 (465)
Q Consensus 224 ~~g~~~~A~ 232 (465)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=5.3e-06 Score=78.73 Aligned_cols=121 Identities=4% Similarity=-0.209 Sum_probs=80.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
+...+.+.|++++|++.|++..+..+.+..++..+..++.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33445567777777777777777766667777777777777788888877777777764 44566777777777777778
Q ss_pred HHHHHHHHHhhcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 048269 160 VEAKYLILKLSEWIKPNEIAYGWLIKG--YCDVGDLIEASKIWN 201 (465)
Q Consensus 160 ~~a~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 201 (465)
++|++.|++.....+.+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888777777662223334444444444 667777777777776
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=4.3e-06 Score=62.42 Aligned_cols=82 Identities=9% Similarity=-0.166 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269 88 RNIDLFWETLQEMGRRR---LVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKY 164 (465)
Q Consensus 88 g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 164 (465)
|++++|+..|++..+.+ +.+..++..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555554443 1223344444555555555555555555544432 2334444444455555555555555
Q ss_pred HHHHhh
Q 048269 165 LILKLS 170 (465)
Q Consensus 165 ~~~~m~ 170 (465)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.8e-05 Score=62.43 Aligned_cols=62 Identities=5% Similarity=-0.143 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CC----hHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRL--VN----DKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
.++..+...+...|++++|+..+++..+... .+ ..++..+...+...|++++|...++...+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666543211 11 12445555555555666555555555443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=2.2e-05 Score=61.92 Aligned_cols=57 Identities=11% Similarity=-0.070 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcC-----CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEK-----PD----ISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
+..+...+...|++++|...+++... .+ ...+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444445555555555555544433 11 23345556666677777777777766653
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=2.3e-05 Score=71.68 Aligned_cols=138 Identities=11% Similarity=-0.044 Sum_probs=71.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLC 154 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 154 (465)
..+..+...+.+.|++++|++.|++..+.... ...... .+...+.. +.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~-----------~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG-----------SRAAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc-----------CccccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34666677777777777777777776541000 000000 00000010 223445555555666
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 155 QRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 155 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
+.|++++|+..+++.....+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666553334455556666666666666666666666655542 124445555555555555555443
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.07 E-value=7.1e-05 Score=56.52 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC---HHhHHHHHHH
Q 048269 113 IALMTLAEVRELKKMVNFFHIMNDCGCEYSL---EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN---EIAYGWLIKG 186 (465)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~li~~ 186 (465)
.+...+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|+..|++.....+.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34445555566666666666555532 1122 344445555555555555555555554222222 3444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 048269 187 YCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~ 206 (465)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555443
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.06 E-value=4.5e-05 Score=60.53 Aligned_cols=96 Identities=9% Similarity=-0.065 Sum_probs=53.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhC------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRR------------------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMN 135 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (465)
...+......+.+.|++++|+..|+..... ++....+|..+..++.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666777777888888888888777654 11122344455555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 136 DCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 136 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
+.. +.+...|..+..+|...|++++|...|++..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 443 3344445555555555555555555555544
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.98 E-value=2.9e-05 Score=73.71 Aligned_cols=113 Identities=7% Similarity=-0.022 Sum_probs=93.9
Q ss_pred CChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 048269 51 LSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF 130 (465)
Q Consensus 51 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (465)
.+++.|...|+.++...+. +..+|..+..++.+.|++++|++.+++..+.++.+..++..+..++.+.|++++|++.
T Consensus 20 g~~~~A~~~~~~Al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3789999999999777655 7999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 048269 131 FHIMNDCGCEYSLEMLNKVVKT--LCQRKLVVEAKYLIL 167 (465)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 167 (465)
|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 97 ~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99998864 3344455555555 888899999999998
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=0.00049 Score=66.53 Aligned_cols=172 Identities=9% Similarity=-0.062 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC--
Q 048269 90 IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE----------LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK-- 157 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 157 (465)
-++|++.++.+...++....+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3466777777777777666677666666666555 777777777777654 456667777666677777
Q ss_pred CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc-----------
Q 048269 158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVG-DLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKI----------- 225 (465)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------- 225 (465)
+++++++.++++....+-|..+|+.-...+.+.| .++++++.++++.+... -+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccccc
Confidence 5677777777777444666777777666666667 67777777777766542 2566666655555442
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChH
Q 048269 226 ---NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKIS 265 (465)
Q Consensus 226 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~ 265 (465)
+.++++++.+++.... .|.+...|.-.-..+.+.+..+
T Consensus 203 ~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCcc
Confidence 4567788888777765 5657778877777776666533
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=9.5e-06 Score=59.58 Aligned_cols=96 Identities=7% Similarity=-0.081 Sum_probs=69.9
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC------HHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS------LEML 146 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 146 (465)
+...+..+...+.+.|++++|++.|++..+..+.+..++..+..++.+.|++++|+..|+...+.. +.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 556777888888888888888888888888777777888888888888888888888888887753 222 4455
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 048269 147 NKVVKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~m 169 (465)
..+..++...|+.+.|...++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 55556666666655555544443
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=0.00011 Score=69.33 Aligned_cols=122 Identities=10% Similarity=0.013 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPN---------------EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
..+..+...+.+.|++++|+..|++...-.+.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 344555555556666666666666554111111 3455555555556666666666665555542
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 209 EPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 209 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
+.+...|..+..+|...|++++|...|+...+. .|.+...+..+..++.+.++.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224555555555555566666666666555543 3334455555555555555554443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.96 E-value=0.00011 Score=67.20 Aligned_cols=139 Identities=5% Similarity=-0.133 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD 189 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~ 189 (465)
.+..+...+.+.|++++|+..|++..+.- ++.. .... .++.....+.+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566667777777777777777666520 1000 0001 111111123456788999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 048269 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYT 269 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 269 (465)
.|++++|+..+++..+.. +-+...|..+..+|...|++++|.+.|++..+. .|.+...+..+..++...++.+++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 336788999999999999999999999999876 56477788888888888888877765
Q ss_pred H
Q 048269 270 M 270 (465)
Q Consensus 270 ~ 270 (465)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00011 Score=58.11 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CC----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 108 DKTFKIALMTLAEVRELKKMVNFFHIMNDC-------GC----------EYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
...+......+.+.|++++|+..|...... +- +.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788888999999999999887764 00 1122445555555666666666666666655
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048269 171 EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDE 206 (465)
Q Consensus 171 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 206 (465)
.-.+.+...|..+..+|...|++++|...|+...+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 333445555556666666666666666666655554
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.93 E-value=3.5e-05 Score=69.57 Aligned_cols=148 Identities=8% Similarity=-0.117 Sum_probs=71.5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 048269 74 SITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTL 153 (465)
Q Consensus 74 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 153 (465)
...+..+...+.+.|++++|...|++.....+.+. .+...++.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34466677777788888888888888765543211 0111222222222110 12566677777
Q ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-cHHHHHHHHHH-HHhcCCHHHH
Q 048269 154 CQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEP-SIDVVDKMIET-FFKINKDDEA 231 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~-~~~~g~~~~A 231 (465)
.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|+...+. .| +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776434556777777777777777777777777777654 23 33344444444 2334556667
Q ss_pred HHHHHHHHHc
Q 048269 232 MKVFQMMRVK 241 (465)
Q Consensus 232 ~~~~~~m~~~ 241 (465)
.+.|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 7777776644
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=0.00075 Score=65.24 Aligned_cols=178 Identities=8% Similarity=-0.083 Sum_probs=148.1
Q ss_pred cCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCChHHHHHHHHH
Q 048269 48 NFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRN----------IDLFWETLQEMGRRRLVNDKTFKIALMT 117 (465)
Q Consensus 48 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 117 (465)
......+.|++.++.++...+. +..+|+.--.++.+.|+ ++++++.++.+.+.++.+..+|+.-...
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3344567899999999888877 88889888888877777 9999999999999999899999999999
Q ss_pred HHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhc----
Q 048269 118 LAEVR--ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK-LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDV---- 190 (465)
Q Consensus 118 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~---- 190 (465)
+.+.+ +++++++.++.+.+.. +-+..+|+.-..++.+.| .++++++.++++....+-|..+|+.....+.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 99999 7799999999999976 668899998888888888 899999999999866688899999888777663
Q ss_pred ----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 048269 191 ----------GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDE 230 (465)
Q Consensus 191 ----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 230 (465)
+.++++++.++...... +-+...|.-+-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999998888753 3367778877777777766443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=2.8e-05 Score=57.83 Aligned_cols=86 Identities=8% Similarity=-0.006 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 048269 121 VRELKKMVNFFHIMNDCG--CEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASK 198 (465)
Q Consensus 121 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 198 (465)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++.....+.+..++..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666666666542 122344555566666666666666666666553334455566666666666666666666
Q ss_pred HHHHHHHC
Q 048269 199 IWNLMTDE 206 (465)
Q Consensus 199 ~~~~m~~~ 206 (465)
.|++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00049 Score=53.43 Aligned_cols=94 Identities=9% Similarity=-0.149 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-------ChH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhC-----
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLV-------NDK-----TFKIALMTLAEVRELKKMVNFFHIMNDC----- 137 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 137 (465)
..+......+.+.|++++|+..|++..+..+. +.. .|..+..++.+.|++++|+..++...+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455666677777777777777777665443 222 5566666666666666666666665553
Q ss_pred --CCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHh
Q 048269 138 --GCEYSLEML----NKVVKTLCQRKLVVEAKYLILKL 169 (465)
Q Consensus 138 --~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~m 169 (465)
. +-+...| .....++...|++++|+..|++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 2 2223344 44555555555555555555554
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.83 E-value=9.9e-05 Score=54.54 Aligned_cols=78 Identities=8% Similarity=-0.114 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269 56 VYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMN 135 (465)
Q Consensus 56 a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (465)
|+..|+.++...+. +...+..+...+...|++++|+..|++..+.++.+..++..+..++...|++++|...|+...
T Consensus 4 a~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD---NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444333322 445555555555555555555555555554444444445555555555555555555555444
Q ss_pred h
Q 048269 136 D 136 (465)
Q Consensus 136 ~ 136 (465)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.77 E-value=0.00012 Score=65.94 Aligned_cols=145 Identities=11% Similarity=0.004 Sum_probs=75.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 048269 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVID 256 (465)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 256 (465)
...+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 445566666667777777777777776654 233321 12223333332221 1136777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC--C-CHhhHHHHHHH-HHhcCCHHH
Q 048269 257 WMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK--P-DISLYHGLIKG-LLRLRRARE 332 (465)
Q Consensus 257 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~-~~~~~~~~~ 332 (465)
+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++... | +...+..+... ....+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887753 23677788888888888889999888888876 3 33344444443 233456777
Q ss_pred HHHHHHHHHH
Q 048269 333 ATQVFREMIK 342 (465)
Q Consensus 333 a~~~~~~m~~ 342 (465)
+..+|+.|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7888888873
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00018 Score=67.95 Aligned_cols=60 Identities=10% Similarity=-0.077 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh----c----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 145 MLNKVVKTLCQRKLVVEAKYLILKLS----E----WIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMT 204 (465)
Q Consensus 145 ~~~~ll~~~~~~~~~~~a~~~~~~m~----~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 204 (465)
+++.|..+|...|++++|+.++++.. . ..+....+++.|...|...|++++|+.++++..
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555444432 0 011122344445555555555555555444443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.75 E-value=0.00027 Score=49.27 Aligned_cols=81 Identities=7% Similarity=-0.007 Sum_probs=52.5
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
+...+..+...+...|++++|...|++..+..+.+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345566666777777777777777777766665566667777777777777777777777766643 3345555555444
Q ss_pred HH
Q 048269 153 LC 154 (465)
Q Consensus 153 ~~ 154 (465)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.00016 Score=68.33 Aligned_cols=123 Identities=9% Similarity=-0.042 Sum_probs=90.8
Q ss_pred HHHhcCChhHHHHHHHHHhhC-----CCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCC-CHHHHH
Q 048269 83 IIGKSRNIDLFWETLQEMGRR-----RLV---NDKTFKIALMTLAEVRELKKMVNFFHIMND-----CG-CEY-SLEMLN 147 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~-~~~~~~ 147 (465)
.+...|++++|+.++++..+. |.. ...+++.+...|...|++++|+.++++..+ .| -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887642 221 245889999999999999999999998765 22 122 345688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh------cC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLS------EW-IKP-NEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~------~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
.|...|...|++++|+.++++.. -| ..| ...+.+.+-.++...+.+++|+.+|..+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865 11 112 233445566666677778888888877765
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.71 E-value=0.0013 Score=51.05 Aligned_cols=96 Identities=8% Similarity=-0.120 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-----CH-----HHHHHHHHHHHcCCCHHHHHHHHHHhhcC------
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCE-Y-----SL-----EMLNKVVKTLCQRKLVVEAKYLILKLSEW------ 172 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 172 (465)
.+......+.+.|++++|+..|+...+.... | +. ..|+.+..++.+.|++++|+..+++...-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4556667778888899999888888775311 0 12 25666666666667777666666665532
Q ss_pred -CCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 173 -IKPNEIAY----GWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 173 -~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
.+.+...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23344455 5555566666666666666665544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=0.00031 Score=51.75 Aligned_cols=79 Identities=15% Similarity=-0.101 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
+.|+..|++..+.++.+...+..+...+...|++++|+..|+...+.. +.+...|..+..++...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457888999988888888999999999999999999999999999875 5568889999999999999999999999987
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.0012 Score=50.46 Aligned_cols=110 Identities=9% Similarity=-0.077 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHH
Q 048269 89 NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQ----RKLVVEAKY 164 (465)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~ 164 (465)
++++|.+.|++..+.|.+... +...|...+..++|++.|+...+.| +...+..|...|.. .++.++|.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 344455555544444433222 3333444444444555554444432 33444444444443 344444444
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 048269 165 LILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 207 (465)
+|++... .-+...+..|...|.. .++.++|..+|+...+.|
T Consensus 83 ~~~~Aa~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACG--LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 4444431 1233344444444444 444444444444444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.59 E-value=0.0026 Score=48.60 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 048269 123 ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCD----VGDLIEASK 198 (465)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~a~~ 198 (465)
++++|++.|+...+.| .++.. +...|...+.+++|.++|++... .-+...+..|...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3444444444444443 22221 33333333444444444444331 1233344444444443 344444444
Q ss_pred HHHHHHHC
Q 048269 199 IWNLMTDE 206 (465)
Q Consensus 199 ~~~~m~~~ 206 (465)
+|++..+.
T Consensus 83 ~~~~Aa~~ 90 (138)
T 1klx_A 83 YYSKACGL 90 (138)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcC
Confidence 44444443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=9.7e-05 Score=53.97 Aligned_cols=60 Identities=8% Similarity=-0.090 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
.+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|+..+++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444445555555555555555544432 2344444444455555555555555555544
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.51 E-value=0.0011 Score=45.96 Aligned_cols=76 Identities=11% Similarity=-0.042 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKG 186 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 186 (465)
.+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44444555555555555555555554432 23344444555555555555555555555442223333444433333
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=0.00046 Score=53.46 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCCh----------hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 048269 53 WRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNI----------DLFWETLQEMGRRRLVNDKTFKIALMTLAEVR 122 (465)
Q Consensus 53 ~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (465)
++.|+..++.++...|. +...|+.+-.++.+.+++ ++|+..|++..+.++....+|..+..+|...|
T Consensus 18 feeA~~~~~~Ai~l~P~---~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPL---DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 45666777776666655 677777777677666654 36777777776666666666666666666553
Q ss_pred -----------CHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 048269 123 -----------ELKKMVNFFHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 123 -----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 150 (465)
++++|++.|++..+. .|+...|...+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 566666666666654 34444443333
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00064 Score=48.66 Aligned_cols=64 Identities=8% Similarity=-0.052 Sum_probs=50.4
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
++..+..+...+.+.|++++|+..|++..+.++.+..+|..+..++...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777888888888888888888888777776667778888888888888888888877665
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.00064 Score=48.65 Aligned_cols=63 Identities=6% Similarity=-0.110 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 107 NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
+..++..+...+.+.|++++|+..|+...+.. +.+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666777777777777777777766654 3345566666677777777777777766654
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00063 Score=52.69 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=55.4
Q ss_pred HhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 048269 85 GKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKY 164 (465)
Q Consensus 85 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 164 (465)
.+.+.+++|.+.++...+.++.+...|..+..++...++++.+...++ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 344556666666666666666666666666666666555431111110 1335555
Q ss_pred HHHHhhcCCCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269 165 LILKLSEWIKPNEIAYGWLIKGYCDV-----------GDLIEASKIWNLMTDEGFEPSIDVVDKMIE 220 (465)
Q Consensus 165 ~~~~m~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 220 (465)
.|++...-.+.+..+|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 55554422233444455555555443 3566666666666654 455444433333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.016 Score=51.68 Aligned_cols=66 Identities=14% Similarity=-0.096 Sum_probs=39.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 174 KPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 174 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4555566655555555566666666666666653 55555555556666666666666666665544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.03 Score=49.92 Aligned_cols=143 Identities=10% Similarity=-0.063 Sum_probs=96.0
Q ss_pred CCHHhHHHHHHHHHh--cC---ChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc---C--CHHHH---HHHHHHhhh-C
Q 048269 72 HNSITFNRMVDIIGK--SR---NIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV---R--ELKKM---VNFFHIMND-C 137 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~--~~~~a---~~~~~~~~~-~ 137 (465)
.+...|...+++... .+ +..+|..+|++..+.++-....+..+..++... + ..... ...+..... .
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 366667666655432 23 356889999999988876666666555544311 1 11111 111221111 1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK 217 (465)
Q Consensus 138 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 217 (465)
..+.+..+|..+...+...|++++|...+++...- .|+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 22567888888877777789999999999998821 378888888889999999999999999998876 577776643
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.95 E-value=0.0024 Score=45.29 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=43.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDK-TFKIALMTLAEVRELKKMVNFFHIMNDCG 138 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (465)
....+.+.|++++|+..|++..+.++.+.. .+..+..++...|++++|+..|+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445666777777888877777777666666 77777777777777777777777777654
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.04 Score=55.96 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=91.5
Q ss_pred HHHhcCCHHHHHH-HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269 117 TLAEVRELKKMVN-FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 117 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (465)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.+.-. .-.......|+++.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHH
Confidence 3345667777665 432211 12223566666777777777766543211 11233456678888
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
|.++.+.+ .+...|..+...+.+.|+++.|.++|..+. -|..+...|...|+.+...++-+...
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~----------d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH----------DLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc----------ChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77765433 366778888888888888888888887653 13445555556777766666665555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Q 048269 276 KRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIE 310 (465)
Q Consensus 276 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 310 (465)
..|. ++....+|.+.|++++|.+++.++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5432 2334445666677777777665543
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.092 Score=53.25 Aligned_cols=103 Identities=6% Similarity=-0.112 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 78 NRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 78 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
..++..+.+.|.+++|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 556666666666666665442110 1122334556666666664332 34556666666666666
Q ss_pred CHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 158 LVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 158 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
+++.|++.|.++. -|..+...|...|+.+...++-+....
T Consensus 696 ~~~~A~~~y~~~~--------d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 696 NFKLAIEAFTNAH--------DLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHHHHT--------CHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcc--------ChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666664 133444444445555554444444433
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.64 E-value=0.0057 Score=56.67 Aligned_cols=83 Identities=8% Similarity=-0.101 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhh----cCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCc-HHHHHHHHHH
Q 048269 157 KLVVEAKYLILKLS----EWIKP----NEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EG-FEPS-IDVVDKMIET 221 (465)
Q Consensus 157 ~~~~~a~~~~~~m~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~~-~~~~~~li~~ 221 (465)
|++++|+.++++.. .-+.| ...+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45555655555543 11111 235566666667777777777666666654 12 1222 3456667777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048269 222 FFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 222 ~~~~g~~~~A~~~~~~m~ 239 (465)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777776666654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.56 E-value=0.029 Score=52.02 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC---CCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhh----c----CCCCCHHh
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCG---CEY----SLEMLNKVVKTLCQRKLVVEAKYLILKLS----E----WIKPNEIA 179 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~----~~~~~~~~ 179 (465)
+..+.+.|++++|+..+++..+.. +.| ...+++.+..+|...|++++|+.++++.. . ..+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334445666777777766665421 111 23456666667777777777776666644 1 11122455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 180 YGWLIKGYCDVGDLIEASKIWNLMTD 205 (465)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~m~~ 205 (465)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66777777777777777777766654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.009 Score=55.43 Aligned_cols=87 Identities=13% Similarity=-0.072 Sum_probs=69.2
Q ss_pred HcCCCHHHHHHHHHHhh----cCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCC-cHHHHHHH
Q 048269 154 CQRKLVVEAKYLILKLS----EWIKP----NEIAYGWLIKGYCDVGDLIEASKIWNLMTD-----EG-FEP-SIDVVDKM 218 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m~----~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g-~~~-~~~~~~~l 218 (465)
.+.|++++|+.++++.. .-+.| ...+++.|...|...|++++|+.++++..+ .| -.| ...+++.|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 35789999999999876 11222 256789999999999999999999998875 22 223 35678999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048269 219 IETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 219 i~~~~~~g~~~~A~~~~~~m~~ 240 (465)
...|...|++++|..++++..+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.49 E-value=0.01 Score=55.04 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHC---CCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCCcchHHHHHHH
Q 048269 191 GDLIEASKIWNLMTDE---GFEP----SIDVVDKMIETFFKINKDDEAMKVFQMMRVK-----RM-DDLGLSTYRIVIDW 257 (465)
Q Consensus 191 g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~~~~~li~~ 257 (465)
|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++..+- |. .|....+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6899999999887652 1122 3578999999999999999999999887642 22 23234578999999
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 048269 258 MCKRGKISQAYTMLEEMFK 276 (465)
Q Consensus 258 ~~~~~~~~~a~~~~~~m~~ 276 (465)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.22 Score=39.08 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=58.6
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE 161 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 161 (465)
....+.|+++.|.++.+.+ .+...|..+.....+.|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 3445667777777766655 2455677777777777777777777766654 3344445555666655
Q ss_pred HHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 162 AKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNL 202 (465)
Q Consensus 162 a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 202 (465)
..++-+... .| -++.-...+...|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 554444433 21 234444445555677776666644
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.41 E-value=0.034 Score=38.82 Aligned_cols=67 Identities=6% Similarity=0.002 Sum_probs=53.0
Q ss_pred CCHHhHHHHHHHHHhcCC---hhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 048269 72 HNSITFNRMVDIIGKSRN---IDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCG 138 (465)
Q Consensus 72 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 138 (465)
.|+..+..+..++...++ .++|..++++..+.++.+..+...+...+.+.|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467777777777765544 6888888888888888888888888888888888888888888888754
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.37 E-value=0.014 Score=41.07 Aligned_cols=55 Identities=4% Similarity=-0.103 Sum_probs=29.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 115 LMTLAEVRELKKMVNFFHIMNDCGCEYSLE-MLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
...+.+.|++++|+..|+...+.. +.+.. .+..+..++...|++++|++.|++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455566666666666555543 23344 55555555555556666655555554
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.17 E-value=0.068 Score=38.15 Aligned_cols=65 Identities=5% Similarity=-0.059 Sum_probs=40.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRR-------RLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
+...+..+...+.+.|+++.|...|+...+. +.....++..+..++.+.|+++.|+..++.+.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4555566666677777777777666665542 2233455666666666666666666666666654
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.15 E-value=0.06 Score=37.51 Aligned_cols=77 Identities=6% Similarity=-0.224 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhH
Q 048269 369 DPLVNFDTIFVGGLVKAGK---SLDAAKYVERVMNRGVEVP-RFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADI 444 (465)
Q Consensus 369 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 444 (465)
+.|+..+..+..++...++ .++|..++++..+ +.|+ ......+...+.+.|++++|...|+++.+..-. ++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--Ccc
Confidence 4566777777777765555 7999999999998 4564 558888889999999999999999999987544 333
Q ss_pred HHHHH
Q 048269 445 FQRYG 449 (465)
Q Consensus 445 ~~~~~ 449 (465)
.....
T Consensus 79 ~~~i~ 83 (93)
T 3bee_A 79 RVTII 83 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.44 Score=37.43 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHH
Q 048269 116 MTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIE 195 (465)
Q Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 195 (465)
......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.. -+..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHH
Confidence 4455678888888887665 357788888888888888888888888876 24556666677788777
Q ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 048269 196 ASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEM 274 (465)
Q Consensus 196 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 274 (465)
..++-+.....|- ++....++.-.|+++++.++|.+. |..| --.-.....|..+.|.++.+++
T Consensus 79 L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~-------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP-------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH-------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH-------HHHHHHHHcCcHHHHHHHHHHh
Confidence 7766666555541 455566667778888888887542 2222 1111122356666777776655
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.83 E-value=1.9e-06 Score=78.02 Aligned_cols=270 Identities=10% Similarity=0.073 Sum_probs=174.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
.+.+|..|..+..+.+++.+|++.|-+.. ++..|..++.+..+.|.+++-+..+....+.. .++.+=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 56778888888888888888876663321 33457888888888888888888887766643 334444578888
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |..|..++++.|++..|.
T Consensus 126 yAk~~rL~elEefl~------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HHTSCSSSTTTSTTS------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HHhhCcHHHHHHHHc------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 888888665443322 46666667777888888888877766654422 445556667777777665
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-
Q 048269 233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK- 311 (465)
Q Consensus 233 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 311 (465)
+.-+ +..++.||..+-.+|...+++.-|.-.--.++-. +.-...++..|.+.|-+++-+.+++.-..
T Consensus 191 daAr-------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGAR-------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT-------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH-------hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 5432 2227778888888888888776665443333322 11223456667788888888888877665
Q ss_pred --CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHhcCCHH
Q 048269 312 --PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSL 389 (465)
Q Consensus 312 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 389 (465)
.....|+-|.-.|++- ++++..+.++..-.+ .| ..-++++| -....|..++-.|.+-.+++
T Consensus 259 ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr---iN---ipKvirac----------E~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---VN---IPKVLRAA----------EQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS---SC---CTTTHHHH----------TTTTCHHHHHHHHHHHTCHH
T ss_pred CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh---cc---HHHHHHHH----------HHHhhHHHHHHHHhcchhHH
Confidence 6666777777777765 344444444332211 11 11245555 24556788888888888888
Q ss_pred HHHH
Q 048269 390 DAAK 393 (465)
Q Consensus 390 ~A~~ 393 (465)
.|..
T Consensus 322 nA~l 325 (624)
T 3lvg_A 322 NAII 325 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.82 E-value=0.058 Score=41.25 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHH
Q 048269 92 LFWETLQEMGRRRLVNDKTFKIALMTLAEVR---ELKKMVNFFHIMNDCGCEY--SLEMLNKVVKTLCQRKLVVEAKYLI 166 (465)
Q Consensus 92 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 166 (465)
.+.+.|++..+.+.++..+...+..++++.+ +.++++.+|+.+.+.+ .| +...+-.+.-++.+.|++++|.+++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444455555555555555555555 4445666665555543 12 2333334444555566666666666
Q ss_pred HHhh
Q 048269 167 LKLS 170 (465)
Q Consensus 167 ~~m~ 170 (465)
+.+.
T Consensus 95 ~~lL 98 (152)
T 1pc2_A 95 RGLL 98 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.79 E-value=0.1 Score=37.20 Aligned_cols=65 Identities=11% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 177 EIAYGWLIKGYCDVGDLIEASKIWNLMTDE------GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 177 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
...+..|...+.+.|+++.|...|+...+. +-.+...++..+..++.+.|+++.|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334445555555555555555555555442 01223455556666666666666666666665543
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.68 E-value=0.89 Score=38.94 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhc-CC
Q 048269 193 LIEASKIWNLMTDEGFEPS---IDVVDKMIETFFKI-----NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKR-GK 263 (465)
Q Consensus 193 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-~~ 263 (465)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..- +..++......++.. |+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCC
Confidence 35566666666664 454 45677777777773 78888888888877663221 366666777777774 78
Q ss_pred hHHHHHHHHHHHHCCCC--CCHHHHH
Q 048269 264 ISQAYTMLEEMFKRGIE--ADNLTLS 287 (465)
Q Consensus 264 ~~~a~~~~~~m~~~~~~--~~~~~~~ 287 (465)
.+.+.+.+++....... |+....+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888888776555 5544333
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.52 E-value=0.1 Score=39.93 Aligned_cols=80 Identities=15% Similarity=0.019 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHH
Q 048269 126 KMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK---LVVEAKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASKIW 200 (465)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 200 (465)
.+.+-|.+..+.| .++..+...+..++++++ ++++++.+|++......| +...+-.|.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444444 355555555556666655 445666666665522122 2333344444556666666666666
Q ss_pred HHHHHC
Q 048269 201 NLMTDE 206 (465)
Q Consensus 201 ~~m~~~ 206 (465)
+.+.+.
T Consensus 95 ~~lL~i 100 (152)
T 1pc2_A 95 RGLLQT 100 (152)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666554
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.48 E-value=2.3e-05 Score=71.23 Aligned_cols=232 Identities=15% Similarity=0.102 Sum_probs=149.1
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
|+..|..++.+..+.|.+++-++.+... +.....+.+=+.|+-+|++.++..+.++++ -.||..-...+.+-
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMA-RKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTT-STTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 7788999999999999999999988644 444444555678999999999987654443 24777777889999
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAM 232 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 232 (465)
|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++ . -+..||-.+..+|...+++..|.
T Consensus 154 cf~e~lYeAAKilys~is--------N~akLAstLV~L~~yq~AVdaArK---A---ns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARK---A---NSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHSCCSTTSSTTGGGSC--------CCTTTSSSSSSCSGGGSSTTTTTT---C---CSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHccCHHHHHHHHHhCc--------cHHHHHHHHHHHHHHHHHHHHHHh---c---CChhHHHHHHHHHhCchHHHHHH
Confidence 999999999988887765 123344445566666666543222 1 35667777777777777777665
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-
Q 048269 233 KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK- 311 (465)
Q Consensus 233 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 311 (465)
-+--.+.-. ......++..|-..|.+++.+.+++.-... -......|+.|.-.|++- +.++..+.++..-.
T Consensus 220 icGLniIvh------adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr 291 (624)
T 3lvg_A 220 MCGLHIVVH------ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR 291 (624)
T ss_dssp HHHHHHHCC------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS
T ss_pred Hhcchhccc------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 554444322 223334555666777777777777665532 233566666666666654 33333333322211
Q ss_pred ----------CCHhhHHHHHHHHHhcCCHHHHH
Q 048269 312 ----------PDISLYHGLIKGLLRLRRAREAT 334 (465)
Q Consensus 312 ----------~~~~~~~~li~~~~~~~~~~~a~ 334 (465)
-....|.-++-.|.+..+++.|.
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33445666677777777776554
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=2.4 Score=39.29 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhcC------CC----HhhH
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKR--GIEAD---NLTLSSIIYGLLARGRLREAYKVVEEIEK------PD----ISLY 317 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~------~~----~~~~ 317 (465)
.|...|...|++.+|.+++..+... |.... ...+...++.|...+++..|..++.++.. ++ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 4555566666666666666655421 11111 12344445556666666666666665432 11 1234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 318 HGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 318 ~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
...+..+...+++.+|.+.|.+..+
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4445555566666666666666543
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.70 E-value=0.91 Score=33.60 Aligned_cols=62 Identities=13% Similarity=0.019 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048269 147 NKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGF 208 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 208 (465)
+..++.+...|.-++-.+++..+....+|++...-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444444555555555555554333344455555555555555555555555555555543
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.43 E-value=1.1 Score=33.24 Aligned_cols=135 Identities=18% Similarity=0.098 Sum_probs=72.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHH
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAY 268 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 268 (465)
-.|..++..++..+..+. .+..-||.+|--....-+-+...++++.+-.- - |. ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---F-Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---F-DL----------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---S-CG----------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---c-Cc----------HhhhcHHHHH
Confidence 346666666666666553 34555666665555555556555555554321 1 21 1223333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048269 269 TMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGC 345 (465)
Q Consensus 269 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 345 (465)
..+-.+- .+.......++.+...|+-++-.++...+.. +++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332221 1334444555566666666666666666432 5566666666666677777777777766666664
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.14 E-value=0.22 Score=42.67 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhh
Q 048269 109 KTFKIALMTLAE-----VRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQR-KLVVEAKYLILKLS 170 (465)
Q Consensus 109 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~ 170 (465)
..|..+...|.+ .|+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445444544 255555555555555432111244444444444442 55555555555544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.13 E-value=0.38 Score=35.32 Aligned_cols=79 Identities=13% Similarity=-0.063 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHH
Q 048269 91 DLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKK---MVNFFHIMNDCGCEY--SLEMLNKVVKTLCQRKLVVEAKYL 165 (465)
Q Consensus 91 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 165 (465)
..+.+.|......|.++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444444555555555555555554433 555555555432 12 222223334445555555555555
Q ss_pred HHHhh
Q 048269 166 ILKLS 170 (465)
Q Consensus 166 ~~~m~ 170 (465)
++.+.
T Consensus 97 ~~~lL 101 (126)
T 1nzn_A 97 VRGLL 101 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.73 E-value=0.75 Score=34.80 Aligned_cols=50 Identities=6% Similarity=-0.040 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048269 191 GDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVK 241 (465)
Q Consensus 191 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 241 (465)
+|.++|.++|+.+++.+-. =...|......-.+.|+...|.+++......
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5666666666666543211 1555555555555666666666666666544
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=4.4 Score=37.51 Aligned_cols=260 Identities=8% Similarity=0.008 Sum_probs=150.6
Q ss_pred ChhHHHHHHHHH---hhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHH----hcCCH
Q 048269 52 SWRPVYLFFQYT---QKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLA----EVREL 124 (465)
Q Consensus 52 ~~~~a~~~f~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 124 (465)
+++.|++-+... .+.......+......++..|...|+++...+.+..+.+.......+...+++.+. .....
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~ 110 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSL 110 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Confidence 455555544332 12344455678889999999999999999988887766543333333444444332 23332
Q ss_pred HH--HHHHHHHhhh--CC-CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCC---HHhHHHHHHHHHhc
Q 048269 125 KK--MVNFFHIMND--CG-CEY---SLEMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPN---EIAYGWLIKGYCDV 190 (465)
Q Consensus 125 ~~--a~~~~~~~~~--~~-~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~---~~~~~~li~~~~~~ 190 (465)
+. -+.+.+.+.. .| +-. .......|...+...|++.+|..++.++. .+.... ...+..-++.|...
T Consensus 111 d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 111 DLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC
Confidence 22 2222222211 11 111 22334567888999999999999999987 232222 35677788999999
Q ss_pred CCHHHHHHHHHHHHH----CCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHH----HHHHHHh
Q 048269 191 GDLIEASKIWNLMTD----EGFEPS--IDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRI----VIDWMCK 260 (465)
Q Consensus 191 g~~~~a~~~~~~m~~----~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~----li~~~~~ 260 (465)
+|+..|..++..... ....|+ ...+...+..+...+++.+|.+.|.+.........+...+.. ++.+..-
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL 270 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 270 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh
Confidence 999999999988743 222232 245677788888899999998888777542111102222222 2222222
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhcC
Q 048269 261 RGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLAR--GRLREAYKVVEEIEK 311 (465)
Q Consensus 261 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~ 311 (465)
.+..+.-..+.........-++...|..++.+|... .+++.....|.....
T Consensus 271 a~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 271 SPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp SSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred CCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 222222223333333222234667788888888764 456777776665444
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.54 E-value=0.31 Score=44.41 Aligned_cols=69 Identities=6% Similarity=-0.021 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh------cCCCCCHHhH
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS------EWIKPNEIAY 180 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~------~~~~~~~~~~ 180 (465)
...++..+...|++++++..+..+.... +-+...|..+|.++.+.|+..+|++.|++.. -|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344455555566666665555555443 4455556666666666666666666655543 2555555443
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.43 E-value=6.5 Score=41.52 Aligned_cols=124 Identities=13% Similarity=0.186 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048269 215 VDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL----STYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSII 290 (465)
Q Consensus 215 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 290 (465)
|..++..+-+.+.++.+.++-....+..... +. ..|..+.+++...|++++|...+-.+.....+ ......|+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 4455555555555555555544443321111 11 13455555555556666655555554443222 23344444
Q ss_pred HHHHhcCC------------HHHHHHHHHHhcC------CCHhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 048269 291 YGLLARGR------------LREAYKVVEEIEK------PDISLYHGLIKGLLRLRRAREATQ-VFREMI 341 (465)
Q Consensus 291 ~~~~~~~~------------~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~ 341 (465)
...+..|. .++..+++..-.+ ..+.-|..|-..+...|++.+|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 44444433 3333333322111 112235555555667777766554 444443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.08 E-value=1.3 Score=32.54 Aligned_cols=82 Identities=15% Similarity=0.022 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHhhcCCCC--CHHhHHHHHHHHHhcCCHHHHHH
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVE---AKYLILKLSEWIKP--NEIAYGWLIKGYCDVGDLIEASK 198 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 198 (465)
...+.+-|......| .++..+--.+..+++++..... ++.+++++.....| .....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444434 2555555555556666554433 66666665532212 22222334445555555555555
Q ss_pred HHHHHHHC
Q 048269 199 IWNLMTDE 206 (465)
Q Consensus 199 ~~~~m~~~ 206 (465)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555553
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.34 E-value=3.7 Score=31.08 Aligned_cols=34 Identities=6% Similarity=-0.085 Sum_probs=22.4
Q ss_pred CHHhHHHHHHHHHhcCCh------hHHHHHHHHHhhCCCC
Q 048269 73 NSITFNRMVDIIGKSRNI------DLFWETLQEMGRRRLV 106 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~ 106 (465)
|..+|-..+...-+.|++ ++..++|++....-+|
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp 51 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPP 51 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCc
Confidence 667777777777766777 6666777766654333
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.24 E-value=1.7 Score=39.58 Aligned_cols=77 Identities=6% Similarity=0.028 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHH-----cCCCCchhHHHHHHH
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLRE-----VGLADLADIFQRYGK 450 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~~~~ 450 (465)
..++..+...|++++|+..++.+... -..+...|..++.++.+.|+..+|++.++++.+ .|+.|...+-+.+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567778999999999999999874 234777999999999999999999999998875 499998888887776
Q ss_pred HHh
Q 048269 451 KMA 453 (465)
Q Consensus 451 ~~~ 453 (465)
++.
T Consensus 254 il~ 256 (388)
T 2ff4_A 254 ILR 256 (388)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.46 E-value=1.2 Score=44.05 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCChHHHH-HHHHHHHhcC-CHHHHHHHHHHhhhC------CCCC-CHH--
Q 048269 77 FNRMVDIIGKSRN-IDLFWETLQEMGRRRLVNDKTFK-IALMTLAEVR-ELKKMVNFFHIMNDC------GCEY-SLE-- 144 (465)
Q Consensus 77 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~~-- 144 (465)
-..++..+...|+ ++.|..+|+++...++.....+. .++..+.+.+ +--+|.+++.+..+. ..++ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4556666666666 57899999999887663332222 2333332222 223445555444321 1111 111
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 145 --------MLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLM 203 (465)
Q Consensus 145 --------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 203 (465)
..+.=...|...|+++.|+++-++...-.+-+-.+|..|..+|...|+++.|+-.++-+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222344566889999999999888555777889999999999999999999888776
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.31 E-value=1.2 Score=30.89 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 90 IDLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
.-+..+-++.+...+. |++.+..+.+++|.+.+++..|+++|+.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555555555554 5566666666666666666666666665554
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.30 E-value=1.8 Score=42.83 Aligned_cols=69 Identities=9% Similarity=-0.071 Sum_probs=56.2
Q ss_pred CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc---------chHHHHHHHHHHHH
Q 048269 365 RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE---------GVVMFEEVGKKLRE 435 (465)
Q Consensus 365 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~~~ 435 (465)
....+-+..-|..|.....+.+.+++|.+.|+..... +-+...+..|++.|.+.+ +.+.++..+=++..
T Consensus 606 ~~~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~ 683 (754)
T 4gns_B 606 NKDEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS 683 (754)
T ss_dssp SSSCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred HhhcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence 3444557778999999999999999999999999974 568899999999998876 67777666666653
No 245
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=88.91 E-value=2.2 Score=36.39 Aligned_cols=252 Identities=9% Similarity=0.028 Sum_probs=116.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcC
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQR 156 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~ 156 (465)
..+...++.|+.+....+++.-...+..+...-...+...+..|+.+-+. .+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE----LLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 45556677777766555554322211111111123344455667765433 3344454433211 11233444556
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH------------HHHHHHHHHh
Q 048269 157 KLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV------------VDKMIETFFK 224 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~------------~~~li~~~~~ 224 (465)
|+.+-+..+++.-..-...+...++. +...+..|+.+ +++.+.+.|..++... -...+...+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 66665555444311111112222223 33445566654 4445555554443210 0123444556
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHH
Q 048269 225 INKDDEAMKVFQMMRVKRMDD--LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT--LSSIIYGLLARGRLR 300 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~ 300 (465)
.|+.+-+..+++. .|..+ .+....+.+.. .+..++.....++++.+.+.|..++... -.+.+...+..|+.+
T Consensus 158 ~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 158 KGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 6776655544432 13333 12223334433 3455665556677777777776554321 123344556678888
Q ss_pred HHHHHHHHhc-C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269 301 EAYKVVEEIE-K---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348 (465)
Q Consensus 301 ~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 348 (465)
-+..+++... . .|..-.+.+- ..++.|+.+ +.+.+.+.|..|+
T Consensus 234 ~v~~Ll~~~g~~~~~~~~~g~t~l~-~A~~~~~~~----i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 234 LVQRLLEQEHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTD 280 (285)
T ss_dssp HHHHHHHSSSCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHHSSCSC
T ss_pred HHHHHHhccCCCccccCCCCCcHHH-HHHHcCcHH----HHHHHHHcCCCCC
Confidence 7777777322 1 2332233332 333445543 3444455576665
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.67 E-value=26 Score=35.65 Aligned_cols=148 Identities=11% Similarity=0.146 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH---HHHHHHHhc
Q 048269 187 YCDVGDLIEASKIWNLMTDEGFEPSIDVVD--KMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR---IVIDWMCKR 261 (465)
Q Consensus 187 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---~li~~~~~~ 261 (465)
+.-.|+-+-...++..+.+. .+..+.. .+.-++...|+.+.+..+++.+.... .| ..-|. ++.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp--~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES--LLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH--HHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH--HHHHHHHHHHHHHhcCC
Confidence 44556666566666655543 1222222 22223335566666666666655431 11 11122 223345566
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-CCHhhH--HHHHHHHHhcCCH-HHHHHHH
Q 048269 262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK-PDISLY--HGLIKGLLRLRRA-REATQVF 337 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~li~~~~~~~~~-~~a~~~~ 337 (465)
|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+ .|..+- .++..+....|.. .++++++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 66655555666665541 11222222222233334555555555554443 333222 2222233333332 4566666
Q ss_pred HHHH
Q 048269 338 REMI 341 (465)
Q Consensus 338 ~~m~ 341 (465)
..+.
T Consensus 653 ~~L~ 656 (963)
T 4ady_A 653 DPLT 656 (963)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6664
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.64 E-value=5.4 Score=27.71 Aligned_cols=70 Identities=6% Similarity=0.013 Sum_probs=53.6
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269 382 LVKAG-KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452 (465)
Q Consensus 382 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 452 (465)
|-+.. +.=+..+-++.+....+.|++.+..+.+++|.+.+++..|..+++.++.+--.. ..+|..+-+-+
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqEl 89 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL 89 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHH
Confidence 33444 555677778888878889999999999999999999999999999988774222 56777766533
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.66 E-value=11 Score=30.17 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhH
Q 048269 385 AGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMAT 454 (465)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 454 (465)
.+...++.++|..|...|+.-... .|......+...|++++|.++++.-++.+-.|...+-..+.....+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 555789999999999998876544 7888888889999999999999999999999999999888876554
No 249
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=86.18 E-value=9.4 Score=28.99 Aligned_cols=99 Identities=13% Similarity=0.004 Sum_probs=69.7
Q ss_pred HHHHHHHhhcccC-CCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHH
Q 048269 352 YIMLLQGHLGKRG-RKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEV 429 (465)
Q Consensus 352 ~~~ll~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 429 (465)
...++.-|...-. ....+.|+.....-+..--. .+++.++|..|...|+.-... .|......+...|++++|.++
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 123 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAV 123 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444433332 34444454433333332222 244899999999998876544 788888888999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHh
Q 048269 430 GKKLREVGLADLADIFQRYGKKMA 453 (465)
Q Consensus 430 ~~~~~~~g~~~~~~~~~~~~~~~~ 453 (465)
++.-++.+-.|...+-..+.....
T Consensus 124 y~~Gi~~~A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 124 LQRGIQNQAEPREFLQQQYRLFQT 147 (152)
T ss_dssp HHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHHHHHH
Confidence 999999999999999988887654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.93 E-value=8.9 Score=29.56 Aligned_cols=111 Identities=8% Similarity=0.044 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhcC-----CCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 048269 290 IYGLLARGRLREAYKVVEEIEK-----PDI-------SLYHGLIKGLLRLRRAREATQVFREMIKR-GCEPTMHTYIMLL 356 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll 356 (465)
+..+...|.++.|+-+.+.+.. ++. .++..+..++...+++.+|...|++.+.. ..-+...+....+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 3444555555555554444332 221 13444556666777777777777775432 1111111100000
Q ss_pred HHhhcccCCCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048269 357 QGHLGKRGRKGPDPLVNFDTIFVGGLVKAGKSLDAAKYVERVMN 400 (465)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (465)
..-....+......+...---+..+|.+.|++++|+.+++.+..
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000000111222333333466778899999999999876543
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.62 E-value=3.1 Score=30.68 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 92 LFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 92 ~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
+..+-++.+...+. |++.+..+.+++|-+.+++..|+++|+-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444445444444 5555555555555555555555555555544
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.59 E-value=18 Score=31.70 Aligned_cols=131 Identities=13% Similarity=0.039 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH----HHhhhCCCCCCHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFF----HIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~ll 150 (465)
.+|.++..-|.+.+++++|++++..- ...+.+.|+...|-++- +...+.++++|......++
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34566667777788888888776543 23344555555444433 4455567778887777777
Q ss_pred HHHHcCCCHH-HHHHHHHHhh-------cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269 151 KTLCQRKLVV-EAKYLILKLS-------EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF 222 (465)
Q Consensus 151 ~~~~~~~~~~-~a~~~~~~m~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 222 (465)
..+.....-+ .=..+.+++. ....-|+.....+...|.+.+++.+|...|- .|-.++...|..++--+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 7776654321 1122333322 1234466677777788888888888777662 23334445554444433
Q ss_pred H
Q 048269 223 F 223 (465)
Q Consensus 223 ~ 223 (465)
.
T Consensus 178 ~ 178 (336)
T 3lpz_A 178 Y 178 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.51 E-value=34 Score=34.84 Aligned_cols=212 Identities=10% Similarity=0.044 Sum_probs=120.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHH--HHHHHHHHhcC
Q 048269 149 VVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVV--DKMIETFFKIN 226 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g 226 (465)
+...+...|+-+....++..+......+..-...+.-++...|+.+.+..+.+.+.... .|....- .++.-+|+..|
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 33445566777777777776653222222333333444557799999999998887641 2322222 23445678889
Q ss_pred CHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 048269 227 KDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRL-REAYKV 305 (465)
Q Consensus 227 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~ 305 (465)
+.....+++..+.... .. ++.-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..+
T Consensus 575 n~~aIq~LL~~~~~d~-~d-~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-ND-DVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CH-HHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cH-HHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 9888888998888652 11 33333333334555778777888887766654 34444444444455555543 577788
Q ss_pred HHHhcC-CCHhhHHHHHHHHH--hcC-------CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhcccC
Q 048269 306 VEEIEK-PDISLYHGLIKGLL--RLR-------RAREATQVFREMIKR-GCEPTMHTYIMLLQGHLGKRG 364 (465)
Q Consensus 306 ~~~~~~-~~~~~~~~li~~~~--~~~-------~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~ 364 (465)
+..+.. +|..+-..-+.++. -.| +....++.+...... .-.++......+-++....++
T Consensus 652 L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 652 LDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 888876 66665544444433 333 233334444444332 223445555556666665555
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.41 E-value=5.6 Score=30.66 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHhh---cCCCCCHH
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMNDCG-CEYSL-------EMLNKVVKTLCQRKLVVEAKYLILKLS---EWIKPNEI 178 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~~~ 178 (465)
++..-++.+...+.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++.. ..+.-+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455666777777777777766654421 12221 234455666777777777777777753 22211111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 179 AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMR 239 (465)
Q Consensus 179 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 239 (465)
++..+- ....... ......+...--.+..+|.+.+++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111110 0000000 00112344454557777888888888888876543
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.26 E-value=21 Score=32.22 Aligned_cols=130 Identities=9% Similarity=-0.069 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh--cCCCC---CHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCcHHHH--
Q 048269 144 EMLNKVVKTLCQRKLVVEAKYLILKLS--EWIKP---NEIAYGWLIKGYCDVG-DLIEASKIWNLMTDEGFEPSIDVV-- 215 (465)
Q Consensus 144 ~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~~~~---~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~-- 215 (465)
.....|...|.+.|+.++..+++.... -+.-+ .......++..+.... ..+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345567777777888888777777765 11111 2233456666665542 23333333333322100 011112
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc-----chHHHHHHHHHhcCChHHHHHHHHHHH
Q 048269 216 ----DKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL-----STYRIVIDWMCKRGKISQAYTMLEEMF 275 (465)
Q Consensus 216 ----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~ 275 (465)
..++..|...|++.+|.+++..+.+.--.. |. ..|..-+..|...+++.++...+....
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 245666666677777766666665532221 21 123444455556666666666665554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.92 E-value=9.8 Score=32.07 Aligned_cols=56 Identities=7% Similarity=-0.115 Sum_probs=42.4
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 82 DIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
..+.+.|++++++.....-.+..+.+...-..++..+|-.|++++|..-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567778888888887777777777777777788888888888887777777664
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.90 E-value=19 Score=31.50 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCCcchHHHHH
Q 048269 180 YGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKV----FQMMRVKRMDDLGLSTYRIVI 255 (465)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~~li 255 (465)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-+.+.++++ +......++
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~-~~~~~~rL~ 101 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRV-DGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 3344445666666666665543321 223444554443333 34444455555 555555555
Q ss_pred HHHHhcCChH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048269 256 DWMCKRGKIS-QAYTMLEEMF----KRG--IEADNLTLSSIIYGLLARGRLREAYKVV 306 (465)
Q Consensus 256 ~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 306 (465)
..+.....-+ .-.++.+++. +.| ..-|+.....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555443211 1122222222 112 1224444445555555555555555544
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.36 E-value=8.3 Score=28.45 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=9.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhh
Q 048269 149 VVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 149 ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
+.-++.+.|++++|.++.+.+.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444443
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.80 E-value=47 Score=35.05 Aligned_cols=148 Identities=9% Similarity=-0.020 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-------------------
Q 048269 251 YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEK------------------- 311 (465)
Q Consensus 251 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------- 311 (465)
...++..+...+..+.+.++.... +.++...-.+..+|...|++++|...|.+...
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 344566677777777766654432 22444444566778899999999999987643
Q ss_pred -------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHHHHh
Q 048269 312 -------PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLGKRGRKGPDPLVNFDTIFVGGLVK 384 (465)
Q Consensus 312 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~li~~~~~ 384 (465)
.-..-|..++..+.+.+.++.+.++-+..++..-.-+. ... ...|..++.+...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~-~~~------------------~~l~~~iFk~~L~ 950 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE-DLS------------------IAITHETLKTACA 950 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCH-HHH------------------HHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCCh-hhH------------------HHHHHHHHHHHHh
Confidence 01123566777777888888888777766654211111 110 1135666777799
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchH
Q 048269 385 AGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVV 424 (465)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 424 (465)
.|++++|...+-.+.+... -...+..|+..++..|..+
T Consensus 951 l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 951 AGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred hCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 9999999999988876443 3456777777777655443
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.70 E-value=8.9 Score=28.29 Aligned_cols=72 Identities=8% Similarity=-0.040 Sum_probs=56.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCh---hHHHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 048269 69 CFAHNSITFNRMVDIIGKSRNI---DLFWETLQEMGRRRL-VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYS 142 (465)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (465)
+-.|++.+--.+..++.+..+. .+++.+++.+.+.++ .....+-.+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 4457788877788888888765 468899998887765 23556777888999999999999999999985 454
No 261
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=83.12 E-value=6.5 Score=28.99 Aligned_cols=78 Identities=9% Similarity=0.134 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc--cchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE--EGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 452 (465)
.+.++.-|...|+.++|.+.++++....+ -...+...+..++-+. ...+.+..++..+.+.|+.....+...+.++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 45677888999999999999999852111 1223445555566654 34678999999999999998888888777654
Q ss_pred h
Q 048269 453 A 453 (465)
Q Consensus 453 ~ 453 (465)
.
T Consensus 89 ~ 89 (129)
T 2nsz_A 89 N 89 (129)
T ss_dssp H
T ss_pred h
Confidence 4
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.10 E-value=5.9 Score=36.48 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=56.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcC-----CCHhhHHHH-
Q 048269 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGI--EADNLTLSSIIYGLLARGRLREAYKVVEEIEK-----PDISLYHGL- 320 (465)
Q Consensus 249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l- 320 (465)
.+...+...|.+.|+++.|.+.|.++..... ..-...+-.+++.+...+++..+...+.++.. ++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677788888888888888888888776422 22234555666667777777777766666543 232222221
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHc
Q 048269 321 ---IKGLLRLRRAREATQVFREMIKR 343 (465)
Q Consensus 321 ---i~~~~~~~~~~~a~~~~~~m~~~ 343 (465)
...+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11223345666666666555443
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.91 E-value=12 Score=27.60 Aligned_cols=70 Identities=6% Similarity=0.013 Sum_probs=52.3
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269 382 LVKAG-KSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452 (465)
Q Consensus 382 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 452 (465)
|-+.. |.-+..+-++.+...++.|++.+....+++|.+.+++..|..+++-++.+--.. ..+|..+-+-+
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqEl 132 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL 132 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHH
Confidence 33444 455666777777777888999999999999999999999999999888774222 66777766533
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.79 E-value=13 Score=27.83 Aligned_cols=67 Identities=7% Similarity=-0.010 Sum_probs=42.1
Q ss_pred CCCHHhHHHHHHHHHhcCChh---HHHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 71 AHNSITFNRMVDIIGKSRNID---LFWETLQEMGRRRLV-NDKTFKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
.|+..+--.+..++.+..+.+ +++.+++.+.+.++. .....-.+.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 466666666666676665443 566677776665442 2334445566677777777777777777664
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=81.67 E-value=16 Score=28.14 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhHH
Q 048269 389 LDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMATR 455 (465)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 455 (465)
+.+.++|..|...|+.-... .|......+...|++.+|.++++.-++.+-.|...+-.++......-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 44788999999998876544 78888888888999999999999999999999999988888655443
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.46 E-value=11 Score=26.07 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778777777776643 22222222346778999999999888888888888877654 36788888888887777
Q ss_pred HcCCCCCHHHHHH
Q 048269 342 KRGCEPTMHTYIM 354 (465)
Q Consensus 342 ~~~~~p~~~~~~~ 354 (465)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555443
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.24 E-value=26 Score=30.36 Aligned_cols=113 Identities=7% Similarity=0.025 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHhhhCCCCCCHHHHHHHH
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNF----FHIMNDCGCEYSLEMLNKVV 150 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 150 (465)
..|.++..-|.+++++++|++++..- ...+.+.|+...|-++ .+...+.+++++......++
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555666666667777777666543 2334455665554443 44455567778877777777
Q ss_pred HHHHcCCCHH-HHHHHHHHhh-----cC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 048269 151 KTLCQRKLVV-EAKYLILKLS-----EW--IKPNEIAYGWLIKGYCDVGDLIEASKIWN 201 (465)
Q Consensus 151 ~~~~~~~~~~-~a~~~~~~m~-----~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 201 (465)
..+......+ .-.++++++. .+ ..-++.....+...|.+.|++.+|...|-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7766533211 1223333332 11 23466777777888888888887777554
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.97 E-value=11 Score=26.01 Aligned_cols=88 Identities=16% Similarity=0.253 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 262 GKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 262 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356778888777776643 222222223467789999999999888888888888777554 6677788888777776
Q ss_pred HcCCCCCHHHHHH
Q 048269 342 KRGCEPTMHTYIM 354 (465)
Q Consensus 342 ~~~~~p~~~~~~~ 354 (465)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455454443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.64 E-value=34 Score=31.31 Aligned_cols=100 Identities=14% Similarity=0.009 Sum_probs=59.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHH-
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNLMTDE--GFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIV- 254 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l- 254 (465)
.+...+...|.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.+....-....+....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35666777777888888888888777663 222335566777777777888888877777764321111122211111
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHHC
Q 048269 255 ---IDWMCKRGKISQAYTMLEEMFKR 277 (465)
Q Consensus 255 ---i~~~~~~~~~~~a~~~~~~m~~~ 277 (465)
...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11233567788877777665543
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.94 E-value=9.1 Score=29.15 Aligned_cols=79 Identities=9% Similarity=0.116 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc--cchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE--EGVVMFEEVGKKLREVGLADLADIFQRYGKK 451 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 451 (465)
..+.++.-|...|+.++|.+.++++....+ -...+...+..++-+. ...+.+..++..+.+.|+.....+...+.++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 345677888999999999999999852111 1223455555666653 3467889999999999988888888777765
Q ss_pred Hh
Q 048269 452 MA 453 (465)
Q Consensus 452 ~~ 453 (465)
..
T Consensus 90 l~ 91 (152)
T 2ion_A 90 YN 91 (152)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.98 E-value=37 Score=30.65 Aligned_cols=166 Identities=12% Similarity=0.077 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC---CHHHHHHHHHHHHcC-CCHHHHHHHHHHhhcCCCCCHHhH---
Q 048269 109 KTFKIALMTLAEVRELKKMVNFFHIMNDC-GCEY---SLEMLNKVVKTLCQR-KLVVEAKYLILKLSEWIKPNEIAY--- 180 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~--- 180 (465)
.....+...|.+.|+.++..+++...... +.-+ .......++..+... +..+.-.++..+......-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999877652 1112 234466788888764 344444455444431001111233
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCCcch
Q 048269 181 ---GWLIKGYCDVGDLIEASKIWNLMTDEGFEPS-----IDVVDKMIETFFKINKDDEAMKVFQMMRVK--RMDDLGLST 250 (465)
Q Consensus 181 ---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~ 250 (465)
.-|+..|...|++.+|.+++..+.+.=-..| ..++..-+..|...+++.++...+...... .+.+ ++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHH
Confidence 3688999999999999999999877311112 345677778899999999999999887543 2222 3332
Q ss_pred HHHH----HHHHH-hcCChHHHHHHHHHHH
Q 048269 251 YRIV----IDWMC-KRGKISQAYTMLEEMF 275 (465)
Q Consensus 251 ~~~l----i~~~~-~~~~~~~a~~~~~~m~ 275 (465)
...+ ...+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2221 12345 6889999988887654
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.09 E-value=37 Score=30.15 Aligned_cols=79 Identities=9% Similarity=0.126 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhc--cchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNE--EGVVMFEEVGKKLREVGLADLADIFQRYGKK 451 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 451 (465)
..+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+. ...+.+..++..+.+.|+.....+...+.++
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999631111 123455555566554 3457789999999999999888888888775
Q ss_pred Hh
Q 048269 452 MA 453 (465)
Q Consensus 452 ~~ 453 (465)
..
T Consensus 298 l~ 299 (358)
T 3eiq_C 298 YN 299 (358)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.86 E-value=22 Score=28.47 Aligned_cols=54 Identities=9% Similarity=0.064 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 192 DLIEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD 245 (465)
Q Consensus 192 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 245 (465)
+..++..+|..|..+|+-- -+..|......+...|++.+|.++|+.-.+.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3455566666665554322 23445555555555566666666666555554444
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.70 E-value=6.1 Score=33.27 Aligned_cols=53 Identities=8% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 117 TLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
...+.|+++++++....-++.. +.|...-..++..+|-.|+++.|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566666666665555543 4555555566666666666666655555443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.98 E-value=40 Score=29.94 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCCC---HhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHH
Q 048269 286 LSSIIYGLLARGRLREAYKVVEEIEKPD---ISLYHGLIKGLLRLRR--AREATQVFREMIKRGCEPTMH 350 (465)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 350 (465)
...++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5778888999999999999999998753 2334445555555433 456788888888777655433
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.87 E-value=15 Score=25.42 Aligned_cols=50 Identities=12% Similarity=-0.055 Sum_probs=22.7
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
+...|++++|..+.+.+. .||...|.+|.. .+.|-.+.+...+..+...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555554444333 444444444432 24444445544444444443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.80 E-value=16 Score=25.31 Aligned_cols=50 Identities=18% Similarity=0.005 Sum_probs=22.4
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
+...|++++|..+.+.+. .||...|.+|.. .+.|-.+.+...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344455555554444433 444444444432 23344444444444444443
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.60 E-value=28 Score=26.07 Aligned_cols=67 Identities=12% Similarity=-0.084 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Q 048269 105 LVNDKTFKIALMTLAEVREL---KKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSE 171 (465)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 171 (465)
.++..+-.....++++..+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35666666666666666543 45666776666643222333344455566777777777777776663
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.57 E-value=72 Score=30.87 Aligned_cols=338 Identities=8% Similarity=-0.026 Sum_probs=171.6
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 048269 67 QPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEML 146 (465)
Q Consensus 67 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 146 (465)
.++.+.....=+..+..+.+.+++...+..+.. .+.+...-+....+....|+..+|......+=..| ...+..+
T Consensus 65 ~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c 139 (618)
T 1qsa_A 65 NPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNAC 139 (618)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHH
T ss_pred CCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHH
Confidence 344333344445566677777777766654432 13355555666667777777766666655554444 3344556
Q ss_pred HHHHHHHHcCCCHHH--HHHHHHHhh-c-----------CCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCc
Q 048269 147 NKVVKTLCQRKLVVE--AKYLILKLS-E-----------WIKPNEI-AYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPS 211 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~--a~~~~~~m~-~-----------~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 211 (465)
+.++..+.+.|.... ...=++.+. . .++++.. ....++..+.+ ...+...... . .++
T Consensus 140 ~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~---~--~~~ 211 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART---T--GAT 211 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--CCC
Confidence 666666665554322 111111111 1 1112211 11222222221 1222221111 1 222
Q ss_pred HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHH----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048269 212 ID---VVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYR----IVIDWMCKRGKISQAYTMLEEMFKRGIEADNL 284 (465)
Q Consensus 212 ~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 284 (465)
.. .+...+.-+.+ .+.+.|...+......... +..... .+.......+...++...+....... .+..
T Consensus 212 ~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 212 DFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp HHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 22 12222333333 3789999999888754322 332222 22333334453456666666654432 3444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhcCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 048269 285 TLSSIIYGLLARGRLREAYKVVEEIEKP---DISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMHTYIMLLQGHLG 361 (465)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 361 (465)
.....+....+.|+++.|...|..|... ...-.--+..++...|+.++|..+|+.+.. +. .-|..+-..-++
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~-~fYg~lAa~~Lg 361 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QR-GFYPMVAAQRIG 361 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC-SHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC-ChHHHHHHHHcC
Confidence 4555555556779999999999999872 222233345677788999999999999873 22 223333332222
Q ss_pred ccCC---CCCCCc-hH--H---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHH
Q 048269 362 KRGR---KGPDPL-VN--F---DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVG 430 (465)
Q Consensus 362 ~~~~---~~~~~~-~~--~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (465)
..-. ....+. .. . --.-+..+...|....|...+..+... . +......+.......|..+.+....
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 362 EEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2111 111110 00 1 112345677889999999988888753 2 3333333444444556666555444
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.17 E-value=41 Score=27.41 Aligned_cols=66 Identities=11% Similarity=0.132 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhH
Q 048269 389 LDAAKYVERVMNRGVEVPRF-DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMAT 454 (465)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 454 (465)
+++.++|..|...|+.-... .|......+...|++++|.++++.-++.+-.|...+-..+.....+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 57889999999998876544 7888888888999999999999999999999999999888876655
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=70.64 E-value=52 Score=28.45 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGD--LIEASKIWNLMTDEGFEPSIDVVDKMIETF 222 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 222 (465)
...++.-|...|+.++|...++++. .... ......++......++ -+.+-.++..+.. ++-+.......+...+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~--~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGG--GGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 4567888989999999999999987 3222 2233344444444443 3445567777764 4444444433333333
Q ss_pred HhcCCH----HHHH----HHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHH---HHHHH-----------CC--
Q 048269 223 FKINKD----DEAM----KVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTML---EEMFK-----------RG-- 278 (465)
Q Consensus 223 ~~~g~~----~~A~----~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~---~~m~~-----------~~-- 278 (465)
....+. ..|. .++......++.|+.. .....- +. .-..+.+.+ +.+.. .|
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~-l~~~~~----~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~ 156 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTY-IDSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSG 156 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTT-TGGGTT----TC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCC
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHH-HHHHHh----cc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCC
Confidence 332221 2233 3334444445555222 111110 01 111122222 22221 01
Q ss_pred -CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhcCCCH---hhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 048269 279 -IEADNL----TLSSIIYGLLARGRLREAYKVVEEIEKPDI---SLYHGLIKGLLRLRR--AREATQVFREMIKRGCEPT 348 (465)
Q Consensus 279 -~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 348 (465)
-..+.. ....++.-|...|+.++|.+.++++..|.. .+..++..++-+.++ .+...+++..+.+.|+-+.
T Consensus 157 ~~~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 157 GGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 111122 236778889999999999999999987522 233444444544433 4567788888887776554
Q ss_pred H
Q 048269 349 M 349 (465)
Q Consensus 349 ~ 349 (465)
.
T Consensus 237 ~ 237 (307)
T 2zu6_B 237 D 237 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.01 E-value=54 Score=28.41 Aligned_cols=167 Identities=8% Similarity=-0.012 Sum_probs=90.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCcHHHHHHHHHH
Q 048269 146 LNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASK----IWNLMTDEGFEPSIDVVDKMIET 221 (465)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~~~~~~~~~li~~ 221 (465)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +.+.+.+.+++++......++..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445556677777777777765432 12334455544433 45555566777777777777766
Q ss_pred HHhcCCH-----HHHHHHHHHHHHcCC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048269 222 FFKINKD-----DEAMKVFQMMRVKRM-DDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLA 295 (465)
Q Consensus 222 ~~~~g~~-----~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 295 (465)
+.....- +-..+....-.+.|- +--++.....+...|.+.|++.+|...|-. |-.-|...+..++.-+..
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHH
Confidence 6553211 112222222222222 112556777788888888888887776641 111134555555554444
Q ss_pred c---CCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 296 R---GRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMI 341 (465)
Q Consensus 296 ~---~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 341 (465)
. |...++--.+ .-.+-.|.-.++...|..+|+...
T Consensus 178 ~~~~~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 178 QVDDIEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HTTCCCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4 4444432211 112334555678888888877665
No 283
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=69.43 E-value=56 Score=28.28 Aligned_cols=79 Identities=9% Similarity=0.115 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc--chHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE--GVVMFEEVGKKLREVGLADLADIFQRYGKK 451 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~ 451 (465)
-.+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.+ ..+.+..++..+.+.|+.....+...+.++
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999521111 1224455555665542 467788999999999998888888877765
Q ss_pred Hh
Q 048269 452 MA 453 (465)
Q Consensus 452 ~~ 453 (465)
..
T Consensus 247 l~ 248 (307)
T 2zu6_B 247 YN 248 (307)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.80 E-value=19 Score=30.29 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcH---HHHHHHHHHH
Q 048269 147 NKVVKTLCQRKLVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSI---DVVDKMIETF 222 (465)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~ 222 (465)
++.+...++.|+.+....+++.-. -....+..-+ +.+...+..|+.+ +++.+.+.|..++. .-.+ .+...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGAT-PFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HHHHH
Confidence 345666677888887777666432 1111122222 3445556667765 44455566655432 1122 23344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH------------HHH
Q 048269 223 FKINKDDEAMKVFQMMRVKRMDDL--GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT------------LSS 288 (465)
Q Consensus 223 ~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~ 288 (465)
+..|+.+-+ +.+.+.|..+. +...++. +...+..|+.+-+ +.+.+.|..++... -..
T Consensus 80 ~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 80 AIAGSVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKVKAL----KFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHHTCHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HHcCCHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHH----HHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 556665544 44444555441 2222333 3444566665443 44444454433210 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269 289 IIYGLLARGRLREAYKVVEEIEK----PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 348 (465)
.+...+..|+.+-+..+++.... .+..-.+.+..+ +..++.....++++.+.+.|..++
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 33444566777777777665222 333333333333 334554444566666666666554
No 285
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=67.64 E-value=74 Score=29.28 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHH
Q 048269 138 GCEYSLEMLNKVVKTLCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDK 217 (465)
Q Consensus 138 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 217 (465)
|++--...|..-.+.+...|++++|.++-..-..|+-.+..|.+.+-..=...|+..-.+.+|..+.+.| ..+..--..
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlE 434 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLE 434 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhH
Confidence 3333333344444455555555555555555554455555555444444334445555555555555554 334433334
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 048269 218 MIETFFKINKDDEAMKVF 235 (465)
Q Consensus 218 li~~~~~~g~~~~A~~~~ 235 (465)
+++.-...|+.+...+.+
T Consensus 435 l~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 435 LCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HhHHHHhccHHHHHHHHH
Confidence 444445555554444443
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=67.45 E-value=13 Score=29.38 Aligned_cols=16 Identities=25% Similarity=0.190 Sum_probs=8.6
Q ss_pred HHHhcCChhHHHHHHH
Q 048269 83 IIGKSRNIDLFWETLQ 98 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~ 98 (465)
..+..|+.+....+++
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3345566665555554
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.01 E-value=48 Score=26.32 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcCC
Q 048269 109 KTFKIALMTLAEVRE 123 (465)
Q Consensus 109 ~~~~~l~~~~~~~~~ 123 (465)
.+-...+..+.+.+.
T Consensus 34 ~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 34 YVRRAAAYALGKIGD 48 (211)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 333344444444443
No 288
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=65.43 E-value=85 Score=28.91 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 048269 50 PLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVN 129 (465)
Q Consensus 50 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (465)
..+++.|+++-... |++=-...|..-...+...|++++|.++.-...+.-.-++.|.+.+-..=...|+..--+.
T Consensus 342 l~n~~lA~~lA~R~-----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 342 LQNPDLALRMAVRN-----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TCCHHHHHHHHHHT-----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred cCCHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 36778888776664 4444677788888888888999998888876654433566666555544444555566666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048269 130 FFHIMNDCGCEYSLEMLNKVVKTLCQRKLVVEAKYLILK 168 (465)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 168 (465)
+|..+.+.| ..+..----+++.-..+|+.+..++.+.+
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc
Confidence 666666665 34443333344555555555555555444
No 289
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.01 E-value=56 Score=26.39 Aligned_cols=19 Identities=5% Similarity=0.100 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 048269 290 IYGLLARGRLREAYKVVEE 308 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~ 308 (465)
+...+..|+.+-+..+++.
T Consensus 154 L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 154 LIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344556666666666554
No 290
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=62.45 E-value=77 Score=27.43 Aligned_cols=122 Identities=10% Similarity=0.055 Sum_probs=58.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHh
Q 048269 220 ETFFKINKDDEAMKVFQMMRVKRMDD--LGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT--LSSIIYGLLA 295 (465)
Q Consensus 220 ~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~ 295 (465)
...+..|+.+-+..++++ .|..+ .+....+.+..+.... .......+.+.+.+.|..++... -.+.+...+.
T Consensus 173 ~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~ 248 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 248 (337)
T ss_dssp HHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 344567777655554432 34333 1222233343333322 22233344455566665554221 1223445567
Q ss_pred cCCHHHHHHHHHHhc-C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 048269 296 RGRLREAYKVVEEIE-K---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPTMH 350 (465)
Q Consensus 296 ~~~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 350 (465)
.|..+.+..+++.-. . .|..-++.|..+ ++.|+.+ +.+.+++.|..++..
T Consensus 249 ~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~ 302 (337)
T 4g8k_A 249 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCG 302 (337)
T ss_dssp TTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTC
T ss_pred hhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCC
Confidence 788887777665321 1 333333344433 3456654 444556677777644
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=62.39 E-value=39 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=12.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
.++.-|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34455555555555555555554
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=62.34 E-value=53 Score=27.06 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=11.8
Q ss_pred HHHHHcCCCHHHHHHHHHHhh
Q 048269 150 VKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~m~ 170 (465)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 344555566666666665554
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.19 E-value=31 Score=27.94 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 048269 291 YGLLARGRLREAYKVVEE 308 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~ 308 (465)
...+..|+.+-+..+++.
T Consensus 182 ~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 182 HWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666655555554
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.65 E-value=17 Score=29.62 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHHcC
Q 048269 383 VKAGKSLDAAKYVERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLREVG 437 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 437 (465)
+..|+.+-+.-+ .+.|..++.. .-..-+....+.|+.+-+..+++...+.|
T Consensus 185 ~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 185 VLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 556665543333 3335444322 11123455566677776666666554443
No 295
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.50 E-value=70 Score=25.65 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHHH
Q 048269 292 GLLARGRLREAYKVVEE 308 (465)
Q Consensus 292 ~~~~~~~~~~a~~~~~~ 308 (465)
..+..|+.+-+..+++.
T Consensus 145 ~A~~~~~~~~v~~Ll~~ 161 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFY 161 (231)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33455666655555543
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.34 E-value=61 Score=24.92 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048269 231 AMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEA 281 (465)
Q Consensus 231 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 281 (465)
+.++|..|...|+-..-...|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334444444444433233334444444444444444544444444444333
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=57.34 E-value=1.5e+02 Score=28.99 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=17.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHh
Q 048269 79 RMVDIIGKSRNIDLFWETLQEMG 101 (465)
Q Consensus 79 ~l~~~~~~~g~~~~a~~~~~~~~ 101 (465)
.+|-.|.|+|++++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 36677788888888888877653
No 298
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=55.89 E-value=46 Score=22.81 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccchHHHHHHHHHHHH-----cCCCCchhHHHHHH
Q 048269 389 LDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGVVMFEEVGKKLRE-----VGLADLADIFQRYG 449 (465)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~~~~~~~ 449 (465)
-.|.++.+++...|+.|+..+...++..|...+- + +.++.+++.. .|..|.......+.
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3467788888888999999999999999987663 2 4454444432 25555555555554
No 299
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.46 E-value=76 Score=25.12 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 282 DNLTLSSIIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
+..+-...+.++.+.|..+....+...+.+++..+-...+.++.+.+. .++...+..+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 444444445555555443333333333333555555555555555554 334444444443
No 300
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=55.37 E-value=29 Score=26.75 Aligned_cols=75 Identities=9% Similarity=0.023 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHhhc-cchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLH-YYSNE-EGVVMFEEVGKKLREVGLADLADIFQRYGKKM 452 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 452 (465)
...++.-|...|+.++|...++++...... ......++. ++-+. ...+.+-.++..+.. ++.....+...+...+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 345678889999999999999998632211 123333333 33332 345566777777744 7777777776666544
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.41 E-value=1.4e+02 Score=28.09 Aligned_cols=63 Identities=6% Similarity=-0.001 Sum_probs=33.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH--HHH-HHHHHHHhcCCHHHHHHHHHHhcC
Q 048269 249 STYRIVIDWMCKRGKISQAYTMLEEMFKRGI-EADNL--TLS-SIIYGLLARGRLREAYKVVEEIEK 311 (465)
Q Consensus 249 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~--~~~-~li~~~~~~~~~~~a~~~~~~~~~ 311 (465)
..+|.+++.|...+.++.|..+..+..--.. .++.. .|. .+...+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3566677777777777777777776541100 01111 111 123344455667777666665544
No 302
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.92 E-value=93 Score=25.60 Aligned_cols=26 Identities=8% Similarity=-0.059 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048269 178 IAYGWLIKGYCDVGDLIEASKIWNLM 203 (465)
Q Consensus 178 ~~~~~li~~~~~~g~~~~a~~~~~~m 203 (465)
......+..+.+.|+-++|.++|=+.
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 33334444444455555555444433
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.41 E-value=66 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=12.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 048269 148 KVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 148 ~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34445555555555555555554
No 304
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.30 E-value=93 Score=24.33 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.2
Q ss_pred HHHHHHHHhcC
Q 048269 112 KIALMTLAEVR 122 (465)
Q Consensus 112 ~~l~~~~~~~~ 122 (465)
...+..+.+.+
T Consensus 32 ~~A~~~L~~~~ 42 (201)
T 3ltj_A 32 RAAAYALGKIG 42 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 33333333333
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.27 E-value=13 Score=31.10 Aligned_cols=24 Identities=0% Similarity=-0.018 Sum_probs=11.8
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCC
Q 048269 118 LAEVRELKKMVNFFHIMNDCGCEY 141 (465)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~~~~~ 141 (465)
.++.|+.+....+++.+.+.|..+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~ 35 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRL 35 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCc
Confidence 344555555555555444444333
No 306
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=45.54 E-value=64 Score=28.74 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHhhc-cchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 048269 375 DTIFVGGLVKAGKSLDAAKYVERVMNRGVEVP----RFDYNKFLHYYSNE-EGVVMFEEVGKKLREVGLADLADIFQRYG 449 (465)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~~~~~~~~~~~ 449 (465)
...+|.-|...|+.++|.+.++++. .|+ ..++..+..++-+. ...+.+-.++..+...|+.....+...+.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~ 90 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFL 90 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3567788899999999999999985 343 22444444444443 34577888888888888888888888777
Q ss_pred HHHh
Q 048269 450 KKMA 453 (465)
Q Consensus 450 ~~~~ 453 (465)
++..
T Consensus 91 ~lle 94 (364)
T 3l6a_A 91 NVLD 94 (364)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.01 E-value=53 Score=26.74 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048269 194 IEASKIWNLMTDEGFEP-SIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDD 245 (465)
Q Consensus 194 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 245 (465)
+.+..+|..|..+|+-- -+..|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35556666666665432 34455666666666677777777776666655444
No 308
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.45 E-value=32 Score=21.56 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEV 121 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 121 (465)
++.++..+++..-.++++-.+.++.+.|..+..+|---.+.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 455566666666666777777777777766666666666655553
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.44 E-value=71 Score=26.27 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 048269 289 IIYGLLARGRLREAYKVVE 307 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~ 307 (465)
.+...+..|+.+-+..+++
T Consensus 143 pL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 143 PLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444456777777777776
No 310
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.16 E-value=1.3e+02 Score=24.15 Aligned_cols=85 Identities=8% Similarity=0.006 Sum_probs=41.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCC-C---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRL-V---NDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTL 153 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~ 153 (465)
.+...++.|+.+.+..+++.+.+.+. + +..- ...+...+..|+.+- ++.+.+.|..++... -.+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-QTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS-CCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC-CCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence 34455667777777777765554443 2 1111 122334445566543 333344444333211 11234444
Q ss_pred HcCCCHHHHHHHHHHh
Q 048269 154 CQRKLVVEAKYLILKL 169 (465)
Q Consensus 154 ~~~~~~~~a~~~~~~m 169 (465)
+..|+.+-+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 5567766666665553
No 311
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.44 E-value=2.4e+02 Score=27.20 Aligned_cols=55 Identities=4% Similarity=-0.072 Sum_probs=42.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 048269 71 AHNSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELK 125 (465)
Q Consensus 71 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (465)
+.+...-.....+....|+..+|....+.+...+...+..+..++..+.+.|.+.
T Consensus 99 p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCC
Confidence 4477777778888999999888888888888877766667888888877666543
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.96 E-value=49 Score=28.04 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=3.9
Q ss_pred HHHcCCCCC
Q 048269 340 MIKRGCEPT 348 (465)
Q Consensus 340 m~~~~~~p~ 348 (465)
+++.|..|+
T Consensus 214 Ll~~gad~~ 222 (285)
T 3kea_A 214 LFKYDINIY 222 (285)
T ss_dssp HTTSCBCST
T ss_pred HHHcCCCCC
Confidence 344444443
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.29 E-value=1.3e+02 Score=23.88 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 048269 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKIN 226 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 226 (465)
..|.+.|+-++.+|.+.| .|.-..-..++.+.-.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 366777777777777777 554444444444444333
No 314
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.73 E-value=1.8e+02 Score=26.26 Aligned_cols=84 Identities=10% Similarity=0.039 Sum_probs=36.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcCC
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQRK 157 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~ 157 (465)
.+...+..|+.+-+.-+++.-...+..+..-. ..+...++.|+.+-+.-+++ .|..++... -.+.+...+..|
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLE----NNANPNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHh----CCCCCCCCCCCCCcHHHHHHHcC
Confidence 34445566666655555543221111111111 22333445566554433333 333322111 112334445567
Q ss_pred CHHHHHHHHHH
Q 048269 158 LVVEAKYLILK 168 (465)
Q Consensus 158 ~~~~a~~~~~~ 168 (465)
+.+.+..+++.
T Consensus 125 ~~~~v~~Ll~~ 135 (437)
T 1n11_A 125 HVETVLALLEK 135 (437)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHhC
Confidence 76666665554
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.72 E-value=1e+02 Score=22.86 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=29.8
Q ss_pred HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC
Q 048269 100 MGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL 158 (465)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 158 (465)
+.+.|.-....-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 13 l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34445422223334444444445555566666666665544555554445555555543
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.57 E-value=1e+02 Score=23.08 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=34.0
Q ss_pred HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 048269 100 MGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
+.+.|.-....-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 18 l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445555333344455555555556667777777776665555666555555666665543
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=40.54 E-value=1.3e+02 Score=23.42 Aligned_cols=60 Identities=8% Similarity=0.174 Sum_probs=35.6
Q ss_pred hHHHHHH-HHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 048269 76 TFNRMVD-IIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCE 140 (465)
Q Consensus 76 ~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 140 (465)
-|..|+. .+--.|.+..++-++... +..+..-|.. -++-+.+++..|+..++.+.+..+.
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~l---NT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKL---NTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTC---CBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhc---chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555544 234467777776555432 2222222322 3567788999999999998865544
No 318
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.42 E-value=34 Score=30.15 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh-ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 048269 376 TIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSN-EEGVVMFEEVGKKLREVGLADLADIFQRYGKKMA 453 (465)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~ 453 (465)
..++.-|...|+.++|.+.++++...... ...+...+..++-+ ....+.+..++..+.+.|+.....+...+.++..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 45677789999999999999988521111 11233444444443 3456788889999998898888888877776543
No 319
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.92 E-value=87 Score=25.04 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=11.8
Q ss_pred HHHHHhcCChhHHHHHHHH
Q 048269 81 VDIIGKSRNIDLFWETLQE 99 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~ 99 (465)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4555566777766666654
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.44 E-value=1.3e+02 Score=24.02 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=14.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC
Q 048269 255 IDWMCKRGKISQAYTMLEEMFKRGI 279 (465)
Q Consensus 255 i~~~~~~~~~~~a~~~~~~m~~~~~ 279 (465)
+...+..|+.+-+..+++.+.+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3444556666666666666666554
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.27 E-value=1.4e+02 Score=23.64 Aligned_cols=33 Identities=9% Similarity=-0.111 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 048269 190 VGDLIEASKIWNLMTDEGFEPSIDVVDKMIETF 222 (465)
Q Consensus 190 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 222 (465)
..|.+.|+-++.+|.+.|-.|.-..-..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 366777777777777776555444434444333
No 322
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=39.03 E-value=1.1e+02 Score=22.78 Aligned_cols=16 Identities=0% Similarity=0.123 Sum_probs=7.4
Q ss_pred HHhcCChhHHHHHHHH
Q 048269 84 IGKSRNIDLFWETLQE 99 (465)
Q Consensus 84 ~~~~g~~~~a~~~~~~ 99 (465)
.++.|+.+....+++.
T Consensus 10 A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 10 LAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHc
Confidence 3445555544444443
No 323
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.56 E-value=1.3e+02 Score=22.80 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 048269 93 FWETLQEMGRRRL--VNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEY 141 (465)
Q Consensus 93 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 141 (465)
+.++|..|...|+ .....|......+-..|++++|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666666555 234456666666666666666666666666655455
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.43 E-value=1.4e+02 Score=23.13 Aligned_cols=56 Identities=13% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHh-cC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 048269 293 LLARGRLREAYKVVEEI-EK---PDISLYHGLIKGLLRLRRAREATQVFREMIKRGCEPT 348 (465)
Q Consensus 293 ~~~~~~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 348 (465)
.+..|+.+-+..+++.- .. .+..-.+.+..+.........-.++.+.+.+.|..++
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 34556666665555554 22 3333334444443333223333556666666666554
No 325
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=37.05 E-value=1e+02 Score=21.20 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=19.4
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 127 MVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 127 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
+.++.++....|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4555566666666676666666666665554
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.90 E-value=1.7e+02 Score=23.58 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhCCCCChHH--------HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 048269 90 IDLFWETLQEMGRRRLVNDKT--------FKIALMTLAEVRELKKMVNFFHIMNDC 137 (465)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (465)
++.|+.+|+.+.+....+... -...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456778887776554332221 113344567777777777777776653
No 327
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=34.29 E-value=2.2e+02 Score=24.33 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=6.5
Q ss_pred HHhcCCHHHHHHHH
Q 048269 118 LAEVRELKKMVNFF 131 (465)
Q Consensus 118 ~~~~~~~~~a~~~~ 131 (465)
.++.|+.+....++
T Consensus 31 A~~~g~~~~v~~ll 44 (351)
T 3utm_A 31 AARSGNEEKLMALL 44 (351)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHcCCHHHHHHHH
Confidence 34445555444443
No 328
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=32.43 E-value=1.9e+02 Score=23.12 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=48.1
Q ss_pred CchhHHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHH
Q 048269 22 PESRLHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHNSITFNRMVDIIGKS-RNIDLFWETLQEM 100 (465)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~ 100 (465)
|+..+...+......+++..+..+.+...-..+....+|+..-.....-..+..-+..++..+... .....+..+|+.+
T Consensus 19 ~~~~~~~el~~~~~~l~~~~l~~l~~~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~ 98 (224)
T 1s1e_A 19 SKDKIEDELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAF 98 (224)
T ss_dssp -------------------CHHHHHHHSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHH
T ss_pred CCCccccccccCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Confidence 434566666666777888888888877665555555555554121122234555555554443322 2334556677666
Q ss_pred hhC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269 101 GRR--RLVNDKTFKIALMTLAEVRELKKMVNFFHIMN 135 (465)
Q Consensus 101 ~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (465)
-.. |..+..-|..++.........++...+|+.+-
T Consensus 99 D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D 135 (224)
T 1s1e_A 99 DTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 135 (224)
T ss_dssp CTTCSSCBCHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred cCCCCCcEeHHHHHHHHHHHccCCHHHHHHHHHHHHc
Confidence 433 33555555555554444333444555555543
No 329
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.39 E-value=56 Score=26.40 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=7.4
Q ss_pred hcCCHHHHHHHHHHHH
Q 048269 326 RLRRAREATQVFREMI 341 (465)
Q Consensus 326 ~~~~~~~a~~~~~~m~ 341 (465)
..|+...++++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344444445444444
No 330
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.00 E-value=2.3e+02 Score=23.94 Aligned_cols=58 Identities=7% Similarity=0.015 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHh
Q 048269 110 TFKIALMTLAEVRELKKMVNFFHIMND-CGCEYSLEMLNKVVKTLCQ----RKLVVEAKYLILKL 169 (465)
Q Consensus 110 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m 169 (465)
....++.... .++.++|.+++..+.. .|..|... ...+...+.. .....++.+.+.+.
T Consensus 230 ~~~~l~~~~~-~~~~~~a~~~l~~l~~~~g~~~~~i-~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 292 (319)
T 2chq_A 230 EMTELIQTAL-KGNFMEARELLDRLMVEYGMSGEDI-VAQLFREIISMPIKDSLKVQLIDKLGEV 292 (319)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHTSCSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3444555544 3788999999988886 77554332 2333333332 23344555444443
No 331
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=31.59 E-value=2.2e+02 Score=23.41 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 048269 214 VVDKMIETFFKINKDDEAMKVFQM 237 (465)
Q Consensus 214 ~~~~li~~~~~~g~~~~A~~~~~~ 237 (465)
++..++..+.+....-++...|+.
T Consensus 231 s~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 231 TIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp CHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred eHHHHHHHHHhCHHHHHHHHhhcc
Confidence 344444444455555555554443
No 332
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.56 E-value=2e+02 Score=23.07 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=34.3
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 048269 181 GWLIKGYC---DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK-----DDEAMKVFQMMRVKRM 243 (465)
Q Consensus 181 ~~li~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~ 243 (465)
--+|+++. +..|.+.|+-++.+|.+.|-.|.-..-..++.+.-.-|. ...|...++....-|.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34445544 336777888888888877766655554455544444332 2234444444444444
No 333
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.54 E-value=2.6e+02 Score=24.25 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHhH
Q 048269 389 LDAAKYVERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLREVGLADLADIFQRYGKKMAT 454 (465)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 454 (465)
....++-..+..-++.|... +...-+..+.+.+++..|..+.+++++.+ +.....+..-++...
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~~~~qArkil~~ 243 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELG--PKPEVAQQTRKILSA 243 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence 33455555555555666544 66777777888888888888888888875 334444444443333
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.46 E-value=1.7e+02 Score=22.29 Aligned_cols=51 Identities=8% Similarity=-0.023 Sum_probs=33.0
Q ss_pred hcCChhHHHHHHHHHhhCCC-C--ChHHHHHHHH------HHHhcCCHHHHHHHHHHhhh
Q 048269 86 KSRNIDLFWETLQEMGRRRL-V--NDKTFKIALM------TLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 86 ~~g~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 136 (465)
..|++-+|-++++....... + ....|..||+ ...+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34888888888888876654 3 2345555555 23456777777777776654
No 335
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=31.21 E-value=2.9e+02 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 048269 377 IFVGGLVKAGKSLDAAKYVERV 398 (465)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m 398 (465)
.....++..|..+.|.++++.+
T Consensus 341 eYA~lLA~qG~l~~A~~yL~~l 362 (399)
T 2pm7_A 341 EFINLTTSTGNFELATEFLNSL 362 (399)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHhC
Confidence 3445566777777777777643
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.04 E-value=1e+02 Score=22.53 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=20.6
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 113 IALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 113 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444433 44455555555555544444444444444444443
No 337
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=30.90 E-value=1.7e+02 Score=22.12 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=26.3
Q ss_pred CHHhHHHHHHHHHhc-CChhHHHHHHHHHhhC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048269 73 NSITFNRMVDIIGKS-RNIDLFWETLQEMGRR--RLVNDKTFKIALMTLAEVRELKKMVNFFHIMN 135 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (465)
+..-+..++..+... ........+|..+-.. |..+..-|..++.........+....+|+.+-
T Consensus 37 ~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D 102 (183)
T 1s6c_A 37 NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYD 102 (183)
T ss_dssp CHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 444444444444322 2333445555555332 22343334444443333333344444554443
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.72 E-value=1e+02 Score=23.00 Aligned_cols=34 Identities=3% Similarity=0.023 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCC
Q 048269 124 LKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRK 157 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 157 (465)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555444444444333444444444
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.62 E-value=1.3e+02 Score=24.55 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 048269 290 IYGLLARGRLREAYKVVE 307 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~ 307 (465)
+...+..|+.+-+..+++
T Consensus 140 L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334455677777666666
No 340
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.38 E-value=2.4e+02 Score=23.55 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=7.9
Q ss_pred HHHHhcCCHHHHHHHHH
Q 048269 220 ETFFKINKDDEAMKVFQ 236 (465)
Q Consensus 220 ~~~~~~g~~~~A~~~~~ 236 (465)
...+..|+.+-+.-+++
T Consensus 166 ~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 166 HITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 33344555554444443
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=30.33 E-value=2.9e+02 Score=24.49 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCCHH
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRE--LKKMVNFFHIMNDCGCEYSLE 144 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 144 (465)
...++.-|...|+.++|...++++...+.........++......++ .+.+-.++..+...++-+...
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 46788888889999999999988853221111222333333333222 234455555565555433333
No 342
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.04 E-value=2.8e+02 Score=24.21 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 048269 77 FNRMVDIIGKSRNIDLFWETLQEMG 101 (465)
Q Consensus 77 ~~~l~~~~~~~g~~~~a~~~~~~~~ 101 (465)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777778888888888887774
No 343
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=29.87 E-value=1.9e+02 Score=22.35 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 048269 230 EAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGI 279 (465)
Q Consensus 230 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 279 (465)
.+..+++.+.+.|..- |...-...+....+.|.+ ....+-.++...|+
T Consensus 51 ~ie~vl~~L~~~g~ld-D~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI 98 (177)
T 3e3v_A 51 YISEIINKLIDLDLIN-DKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGI 98 (177)
T ss_dssp HHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCC
Confidence 3445555555555543 444444444444443322 23445555556665
No 344
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.30 E-value=1.8e+02 Score=21.74 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=21.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444444455555555555444444444433344444443
No 345
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.03 E-value=2.3e+02 Score=22.89 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhCCCCCCHH--HH-----HHHHHHHHcCCCHHHHHHHHHHhh
Q 048269 124 LKKMVNFFHIMNDCGCEYSLE--ML-----NKVVKTLCQRKLVVEAKYLILKLS 170 (465)
Q Consensus 124 ~~~a~~~~~~~~~~~~~~~~~--~~-----~~ll~~~~~~~~~~~a~~~~~~m~ 170 (465)
++.|+.+|+.+.+.-..++.. .. -..+..|.+.|.+++|.+++++..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 466777777766643111111 01 123345666677777777776665
No 346
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=28.97 E-value=1.8e+02 Score=27.44 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=22.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 048269 247 GLSTYRIVIDWMCKRGKISQAYTMLEEMFKRGIEAD 282 (465)
Q Consensus 247 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 282 (465)
+......|-.-|.+.+++-.|-+++..+...+..++
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i~ 251 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDIT 251 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCCC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCCC
Confidence 344455566677777888777777777776654443
No 347
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.59 E-value=1.2e+02 Score=19.56 Aligned_cols=38 Identities=11% Similarity=0.257 Sum_probs=15.3
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 048269 203 MTDEGFEPSIDVVDKMIETFFKIN-KDDEAMKVFQMMRVK 241 (465)
Q Consensus 203 m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 241 (465)
+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~ 46 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM 46 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 3444544443332 2333333332 333444455544443
No 348
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.28 E-value=1.2e+02 Score=22.79 Aligned_cols=46 Identities=15% Similarity=0.207 Sum_probs=23.6
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcCCC
Q 048269 113 IALMTLAEVR-ELKKMVNFFHIMNDCGCEYSLEMLNKVVKTLCQRKL 158 (465)
Q Consensus 113 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 158 (465)
.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3344444443 445566666666655544455554445555555554
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.18 E-value=2e+02 Score=21.96 Aligned_cols=54 Identities=6% Similarity=-0.147 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH-HH-----hhccchHHHHHHHHHHHHc
Q 048269 383 VKAGKSLDAAKYVERVMNRGVEV--PRFDYNKFLH-YY-----SNEEGVVMFEEVGKKLREV 436 (465)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~-~~-----~~~g~~~~a~~~~~~~~~~ 436 (465)
...|++-+|-++|+..=...-.+ ....|..||. .. .+.|+...|..++.+....
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45599999999999997654445 4457777777 22 3469999999999998874
No 350
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.97 E-value=98 Score=22.74 Aligned_cols=13 Identities=8% Similarity=0.363 Sum_probs=5.2
Q ss_pred hcCCHHHHHHHHH
Q 048269 120 EVRELKKMVNFFH 132 (465)
Q Consensus 120 ~~~~~~~a~~~~~ 132 (465)
+.|+.+.+..+++
T Consensus 11 ~~g~~~~v~~ll~ 23 (156)
T 1bd8_A 11 ARGDVQEVRRLLH 23 (156)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 3344444443333
No 351
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.91 E-value=1.5e+02 Score=22.12 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHc
Q 048269 227 KDDEAMKVFQMMRVK 241 (465)
Q Consensus 227 ~~~~A~~~~~~m~~~ 241 (465)
..-.|.++++.+.+.
T Consensus 32 ~h~sa~ei~~~l~~~ 46 (150)
T 2w57_A 32 QHISAEELYKKLIDL 46 (150)
T ss_dssp SSEEHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh
Confidence 334455555555444
No 352
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.71 E-value=1.2e+02 Score=19.06 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccch
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEGV 423 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (465)
.++-++..+++..-.++++..+.++.+.| ..+..+|..-.+.+++..-.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~ 52 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777777777776 35555665556665554433
No 353
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.46 E-value=3e+02 Score=24.62 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=22.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFH 132 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (465)
.+...++.|+.+-+.-+++.-...+..+..-. ..+...++.|+.+.+..+++
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHh
Confidence 34445566666555444443221122221111 12333445566655554443
No 354
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.19 E-value=5.2e+02 Score=26.39 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=44.0
Q ss_pred HHHHHHcCCC---HHHHHHHHHHhhc---C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 048269 149 VVKTLCQRKL---VVEAKYLILKLSE---W--IKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIE 220 (465)
Q Consensus 149 ll~~~~~~~~---~~~a~~~~~~m~~---~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 220 (465)
++...|..|. .+.|.+.|++... + ++||. -..+...-.+.|+.++-..+++..... .+..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Confidence 4455555554 3456666666541 1 33332 233333344456655555555555553 23333445666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048269 221 TFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 221 ~~~~~g~~~~A~~~~~~m~~ 240 (465)
+++...+.+...++++....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 66666666666666655543
No 355
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.59 E-value=2e+02 Score=21.32 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=20.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444444444455555555555444444444433344444433
No 356
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.46 E-value=1.4e+02 Score=22.70 Aligned_cols=48 Identities=6% Similarity=0.019 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 048269 251 YRIVIDWMCKRGKISQAYTMLEEMFKR--GIEADNLTLSSIIYGLLARGR 298 (465)
Q Consensus 251 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~ 298 (465)
-..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344455555555555666666666655 444454444444445554443
No 357
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.38 E-value=4.1e+02 Score=24.94 Aligned_cols=62 Identities=6% Similarity=-0.026 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CChH--H-HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048269 75 ITFNRMVDIIGKSRNIDLFWETLQEMGRRRL--VNDK--T-FKIALMTLAEVRELKKMVNFFHIMND 136 (465)
Q Consensus 75 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (465)
..+|.+++.|...+.++.|..+..+..-... .+.. . +--+.+.+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555555555555555555555432111 1110 1 11233444445555555555555443
No 358
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.25 E-value=1.8e+02 Score=21.17 Aligned_cols=45 Identities=11% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 253 IVIDWMCKRG-KISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 253 ~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
.++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444433 44455555555555544444444433344444333
No 359
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.24 E-value=2.1e+02 Score=24.89 Aligned_cols=15 Identities=0% Similarity=-0.068 Sum_probs=7.5
Q ss_pred HhcCCHHHHHHHHHH
Q 048269 294 LARGRLREAYKVVEE 308 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~ 308 (465)
+..|+.+-+..+++.
T Consensus 181 ~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRNREALDLMMDT 195 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 344555555555543
No 360
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=25.55 E-value=2.3e+02 Score=21.85 Aligned_cols=141 Identities=10% Similarity=-0.070 Sum_probs=62.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 048269 73 NSITFNRMVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEMLNKVVKT 152 (465)
Q Consensus 73 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 152 (465)
|...-...+..+.+.|..+....+. .+... ++..+-...+.++.+.+..+. ...+..+.. .++..+-...+.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~~--~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~a 99 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLI-KALKD--EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVA 99 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHH-HHTTC--SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHH-HHHcC--CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHH
Confidence 3444444444444444433222222 23221 244444555555555555433 333333332 3566665666666
Q ss_pred HHcCCCHHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC
Q 048269 153 LCQRKLVVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK 227 (465)
Q Consensus 153 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 227 (465)
+.+.++.+....+ .++.. .++...-...+.+..+.++.+ +...+..+.. .++..+-...+.++.+.|.
T Consensus 100 L~~~~~~~~~~~L-~~~l~--d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 100 LGQIGDERAVEPL-IKALK--DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHCCGGGHHHH-HHHTT--CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCcHHHHHHH-HHHHc--CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 6666554333222 22221 345555555555555555432 3333333332 2344444555555555544
No 361
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=25.47 E-value=1.2e+02 Score=18.35 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 048269 55 PVYLFFQY 62 (465)
Q Consensus 55 ~a~~~f~~ 62 (465)
.|.-+-+|
T Consensus 24 EA~tIA~~ 31 (61)
T 3ph0_C 24 EAASIADW 31 (61)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 362
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=25.29 E-value=98 Score=24.62 Aligned_cols=19 Identities=11% Similarity=-0.139 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHh
Q 048269 291 YGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~~ 309 (465)
...+..|+.+-+..+++.-
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLG 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHhcC
Confidence 3345566666555555443
No 363
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=25.22 E-value=92 Score=19.07 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048269 229 DEAMKVFQMMRVKRMDDLGLSTYRIVIDWM 258 (465)
Q Consensus 229 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~ 258 (465)
++|.+.|.+|++..-.+ +.-+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~-s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD-STWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCC-SSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-CCCcHHHHHHHh
Confidence 45555665555544333 455666666555
No 364
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=24.98 E-value=41 Score=24.28 Aligned_cols=51 Identities=8% Similarity=0.086 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHH---hcCChHHHHHHHHHHHHCCC
Q 048269 226 NKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMC---KRGKISQAYTMLEEMFKRGI 279 (465)
Q Consensus 226 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~ 279 (465)
..+++|.+++..|++.-+.-..+..||..+..+- ..++. ..+|..+.+.++
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~l 94 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGI 94 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCc
Confidence 3577888888877765433225667887777654 23333 455556665554
No 365
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=24.27 E-value=3.5e+02 Score=23.50 Aligned_cols=71 Identities=7% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048269 69 CFAHNSITFNRMVDIIGKSRNIDLFWETLQEMGRR--------------RLVNDKTFKIALMTLAEVRELKKMVNFFHIM 134 (465)
Q Consensus 69 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 134 (465)
|+..+......+.... .|++..+..+++++... +.........++.++. .++...+..+++.+
T Consensus 195 ~~~~~~~a~~~l~~~~--~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l 271 (373)
T 1jr3_A 195 HIAHEPRALQLLARAA--EGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMV-EANGERVMALINEA 271 (373)
T ss_dssp TCCBCHHHHHHHHHHS--SSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTTCCCHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4455555554444332 56666666666554321 1112233335555544 46889999999999
Q ss_pred hhCCCCCC
Q 048269 135 NDCGCEYS 142 (465)
Q Consensus 135 ~~~~~~~~ 142 (465)
...|..|.
T Consensus 272 ~~~g~~~~ 279 (373)
T 1jr3_A 272 AARGIEWE 279 (373)
T ss_dssp HHTTCCHH
T ss_pred HHhCcCHH
Confidence 98886654
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.04 E-value=6e+02 Score=26.07 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHhcC
Q 048269 213 DVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGL----STYRIVIDWMCKRG 262 (465)
Q Consensus 213 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~ 262 (465)
.-|..++..+-+.+-++.+.++-+...+.- .+.|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHhhCC
Confidence 367888888888999998888888777542 22133 25777777776554
No 367
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.93 E-value=1.9e+02 Score=24.84 Aligned_cols=14 Identities=7% Similarity=0.439 Sum_probs=6.7
Q ss_pred HHHHHHHcCCCCCH
Q 048269 336 VFREMIKRGCEPTM 349 (465)
Q Consensus 336 ~~~~m~~~~~~p~~ 349 (465)
+.+-+++.|-.||.
T Consensus 316 iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHHTTCCC--
T ss_pred HHHHHHHCcCCCCC
Confidence 34445566666653
No 368
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.91 E-value=2.4e+02 Score=24.52 Aligned_cols=18 Identities=6% Similarity=-0.202 Sum_probs=9.2
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 048269 151 KTLCQRKLVVEAKYLILK 168 (465)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~ 168 (465)
...+..|+.+-+..+++.
T Consensus 89 ~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 334445555555555554
No 369
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=23.78 E-value=3e+02 Score=22.44 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=7.3
Q ss_pred HhcCCHHHHHHHHHH
Q 048269 294 LARGRLREAYKVVEE 308 (465)
Q Consensus 294 ~~~~~~~~a~~~~~~ 308 (465)
+..|+.+-+..+++.
T Consensus 142 ~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 142 CENQQRACVKKLLES 156 (261)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHc
Confidence 344555555444443
No 370
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.67 E-value=1.7e+02 Score=21.65 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=19.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048269 254 VIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARG 297 (465)
Q Consensus 254 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 297 (465)
++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 334443334 4455555555555544444444333344444433
No 371
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.35 E-value=1.8e+02 Score=19.77 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHH
Q 048269 298 RLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAR 331 (465)
Q Consensus 298 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 331 (465)
..+.|.++++.+.......|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4566666666666655566666666665545443
No 372
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.35 E-value=2.6e+02 Score=21.56 Aligned_cols=19 Identities=5% Similarity=0.356 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHCCCCCc
Q 048269 193 LIEASKIWNLMTDEGFEPS 211 (465)
Q Consensus 193 ~~~a~~~~~~m~~~g~~~~ 211 (465)
.....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3444556666666665554
No 373
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.27 E-value=2.8e+02 Score=21.96 Aligned_cols=211 Identities=8% Similarity=0.026 Sum_probs=84.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHcCC
Q 048269 80 MVDIIGKSRNIDLFWETLQEMGRRRLVNDKTFKIALMTLAEVRELKKMVNFFHIMNDCGCEYSLEM--LNKVVKTLCQRK 157 (465)
Q Consensus 80 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~ 157 (465)
.+...+..|+.+-+..+++.-...+..+..-. ..+...+..|+.+-+. .+.+.|..++... -.+.+...+..|
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-TPLMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCC-CHHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 34455566776544433332111111122222 2333444556655433 3334443332211 112344445566
Q ss_pred CHHHHHHHHHHhh-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHH--HHHHHHHHHhcCCHHHHHHH
Q 048269 158 LVVEAKYLILKLS-EWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDV--VDKMIETFFKINKDDEAMKV 234 (465)
Q Consensus 158 ~~~~a~~~~~~m~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~ 234 (465)
+.+-+..+++.-. .-...+....+. +...+..|+.+ +++.+.+.|..++... -...+...+..|+.+ +
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~ 159 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWTP-MIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----I 159 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----H
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----H
Confidence 6655554444321 101112222222 33344555544 4444455555443211 112233344455544 3
Q ss_pred HHHHHHcCCCCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHh
Q 048269 235 FQMMRVKRMDDLGLST--YRIVIDWMCKRGKISQAYTMLEEMFKRGIEADNLT--LSSIIYGLLARGRLREAYKVVEEI 309 (465)
Q Consensus 235 ~~~m~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~ 309 (465)
++.+.+.|..+ +... -.+.+...++.|+.+-+. .+.+.|..++... -.+.+......|+...+.++.+.+
T Consensus 160 ~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 160 AEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVV----LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKAL 233 (237)
T ss_dssp HHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHH----HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHH----HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445444 2211 112333444556654333 3334444332111 112233334556666666665544
No 374
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=23.17 E-value=3.1e+02 Score=22.37 Aligned_cols=15 Identities=0% Similarity=-0.225 Sum_probs=6.7
Q ss_pred HHHhcCChhHHHHHH
Q 048269 83 IIGKSRNIDLFWETL 97 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~ 97 (465)
..+..|+.+.+..++
T Consensus 9 ~A~~~g~~~~v~~Ll 23 (261)
T 2xai_A 9 EAAIHGHQLSLRNLI 23 (261)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 344455554443333
No 375
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.92 E-value=2.6e+02 Score=23.30 Aligned_cols=18 Identities=0% Similarity=-0.147 Sum_probs=9.6
Q ss_pred HHHHHhcCChhHHHHHHH
Q 048269 81 VDIIGKSRNIDLFWETLQ 98 (465)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~ 98 (465)
+...+..|+.+.+..+++
T Consensus 63 L~~Aa~~g~~~~v~~Ll~ 80 (285)
T 3d9h_A 63 MHEAAIHGHQLSLRNLIS 80 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444556666655444443
No 376
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.82 E-value=1.6e+02 Score=22.35 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHcCCCH
Q 048269 111 FKIALMTLAEVRELKKMVNFFHIMNDC--GCEYSLEMLNKVVKTLCQRKLV 159 (465)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~ 159 (465)
-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344455555555556666666666655 4444555544445555555543
No 377
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.77 E-value=3.8e+02 Score=23.27 Aligned_cols=53 Identities=2% Similarity=-0.054 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhccchHHHHHHHHHHHHcCC
Q 048269 386 GKSLDAAKYVERVMNRGVEVPRF--DYNKFLHYYSNEEGVVMFEEVGKKLREVGL 438 (465)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 438 (465)
.+..+..++-..+..-++.|... +...-+..+.+.+++..|..+.+++++.+-
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34455666666666666666543 666777777788888888888888887654
No 378
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.56 E-value=1.4e+02 Score=21.66 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=29.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhccc
Q 048269 378 FVGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEEG 422 (465)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 422 (465)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344455667777888999988876655566655555566665543
No 379
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.53 E-value=2.2e+02 Score=20.40 Aligned_cols=42 Identities=7% Similarity=0.018 Sum_probs=21.9
Q ss_pred HHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 199 IWNLMTDEGFEPSIDVVDKMIETFFKINKDDEAMKVFQMMRV 240 (465)
Q Consensus 199 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 240 (465)
+|+.+....+.|+...-..-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555544443333333444556666666666665553
No 380
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.51 E-value=4.5e+02 Score=24.03 Aligned_cols=37 Identities=14% Similarity=-0.049 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC
Q 048269 225 INKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG 262 (465)
Q Consensus 225 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~ 262 (465)
.++.+.|+..+..|.+.|..| ....-..+..+.-.-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp-~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDP-LYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhccc
Confidence 355666666666666665554 3333333333433333
No 381
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.34 E-value=3.3e+02 Score=22.44 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048269 210 PSIDVVDKMIETFFKINKDDEAMKVFQMMRVKRMDDLGLSTYRIVIDWMCKRG-KISQAYTMLEEMFKRGIEADNLTLSS 288 (465)
Q Consensus 210 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ 288 (465)
++..+-...+.++.+.|+.+ +...+..+.. .+ +...-...+.++...+ +...+...+..+.. .++..+-..
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~-~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~ 211 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DP-NGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIE 211 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CS-SHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CC-CHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHH
Confidence 45555555555565555532 3333333332 12 4444444555555544 22344444444433 235556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048269 289 IIYGLLARGRLREAYKVVEEIEKPDISLYHGLIKGLLRLRRAREATQVFREMIK 342 (465)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 342 (465)
.+.++.+.|+......+...+..++ .....+.++.+.|.. .+...+.++.+
T Consensus 212 A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 212 AIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred HHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 6667777776554444444444444 223445556666653 45555555553
No 382
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.71 E-value=1.5e+02 Score=21.44 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=25.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048269 253 IVIDWMCKRGKISQAYTMLEEMFKRGIEADNLTLSSIIYGLLARGR 298 (465)
Q Consensus 253 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 298 (465)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444455555666667666666555555555455555555543
No 383
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.59 E-value=3.3e+02 Score=22.29 Aligned_cols=18 Identities=6% Similarity=-0.053 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 048269 290 IYGLLARGRLREAYKVVE 307 (465)
Q Consensus 290 i~~~~~~~~~~~a~~~~~ 307 (465)
+...+..|+.+-+..+++
T Consensus 152 L~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 152 LSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334455677776666666
No 384
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.10 E-value=1.4e+02 Score=22.05 Aligned_cols=22 Identities=5% Similarity=-0.006 Sum_probs=8.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCC
Q 048269 83 IIGKSRNIDLFWETLQEMGRRR 104 (465)
Q Consensus 83 ~~~~~g~~~~a~~~~~~~~~~~ 104 (465)
.+...+..-.|.++++.+.+.+
T Consensus 22 ~L~~~~~h~sa~eI~~~l~~~~ 43 (139)
T 3mwm_A 22 ALQEVEEFRSAQELHDMLKHKG 43 (139)
T ss_dssp HHTTCSSCEEHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhC
Confidence 3333333334444444444433
No 385
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=21.10 E-value=3.9e+02 Score=23.03 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=18.4
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCH
Q 048269 119 AEVRELKKMVNFFHIMNDCGCEYSL 143 (465)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (465)
...|+...|+.+++.+...|..|..
T Consensus 221 i~~~d~~~al~~l~~l~~~g~~~~~ 245 (343)
T 1jr3_D 221 LLMGKSKRALHILQQLRLEGSEPVI 245 (343)
T ss_dssp HTTSCHHHHHHHHTSSTTTTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCcHHH
Confidence 3457888888888888877765543
No 386
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=21.02 E-value=2.6e+02 Score=24.89 Aligned_cols=65 Identities=6% Similarity=0.002 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCCC--HHHHHHHHHHhhcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 048269 143 LEMLNKVVKTLCQRKL--VVEAKYLILKLSEWIKPNEIAYGWLIKGYCDVGDLIEASKIWNLMTDEG 207 (465)
Q Consensus 143 ~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 207 (465)
..+|-.++..+....+ .+++..+++.+..|..++...=..|+..+.+.-..++...+.+.|++.+
T Consensus 23 ~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 23 VPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp -CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 3456667766665543 4677777777776666666666666666666666777777777776644
No 387
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.98 E-value=1.5e+02 Score=18.04 Aligned_cols=46 Identities=4% Similarity=-0.140 Sum_probs=32.4
Q ss_pred HHhhhhhCCCCCCHHHHHHHHhcCCCChhHHHHHHHHHhhcCCCCCCC
Q 048269 26 LHSSLSSCNFNLTHEFFLQICNNFPLSWRPVYLFFQYTQKAQPCFAHN 73 (465)
Q Consensus 26 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~~~~~~~ 73 (465)
-...|...=..++...+..+|.....+.+.|...+-. +..+++.|+
T Consensus 12 ~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~--m~~~~~~~~ 57 (59)
T 1wgl_A 12 DLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ--MGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH--SSCCCCSCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc--CcCCCCCCC
Confidence 3344444445668888888888888888888888887 466666664
No 388
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.51 E-value=1.9e+02 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048269 374 FDTIFVGGLVKAGKSLDAAKYVERVM 399 (465)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (465)
.+.-....+.+.|++++|++..++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667788899999999988766554
No 389
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.50 E-value=4e+02 Score=23.02 Aligned_cols=89 Identities=7% Similarity=-0.012 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHhhcCCCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC---------CCh---HHHHHHHHHH
Q 048269 52 SWRPVYLFFQYTQKAQPCFAHN-SITFNRMVDIIGKSRNIDLFWETLQEMGRRRL---------VND---KTFKIALMTL 118 (465)
Q Consensus 52 ~~~~a~~~f~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~---~~~~~l~~~~ 118 (465)
+.+....++... ..+.|+..+ ......++... .|++..|...++.+...+. +.. .....++...
T Consensus 194 ~~~~~~~~l~~~-~~~~~~~~~~~~~l~~i~~~~--~G~~r~a~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i 270 (354)
T 1sxj_E 194 SDSEISTILSDV-VTNERIQLETKDILKRIAQAS--NGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270 (354)
T ss_dssp CHHHHHHHHHHH-HHHHTCEECCSHHHHHHHHHH--TTCHHHHHHHHTHHHHTTTTEECSSCCCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHHcCCCCCcHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCCCcCcCcCCCCccHHHHHHHHHHHH
Confidence 333444444443 223344444 45555555433 6788888877776543221 111 2334455555
Q ss_pred Hhc---CCHHHHHHHHHHhhhCCCCCCH
Q 048269 119 AEV---RELKKMVNFFHIMNDCGCEYSL 143 (465)
Q Consensus 119 ~~~---~~~~~a~~~~~~~~~~~~~~~~ 143 (465)
... +.++.+.+.+..+...|..+..
T Consensus 271 ~~~~~~~~~~~~~~~l~~l~~~g~~~~~ 298 (354)
T 1sxj_E 271 VKERSVNSLIECRAVLYDLLAHCIPANI 298 (354)
T ss_dssp HHCCSHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHcCCCHHH
Confidence 544 3345555555566666765544
No 390
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=20.41 E-value=3.6e+02 Score=25.61 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhhcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 048269 157 KLVVEAKYLILKLSEWIKP-NEIAYGWLIKGYCDVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINKDDEA 231 (465)
Q Consensus 157 ~~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 231 (465)
.+.+.......++...++. +..-...++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.|+|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 3445555666665533332 3445667788888888888888888887665332 33344 556677888877765
No 391
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.13 E-value=5e+02 Score=23.69 Aligned_cols=55 Identities=7% Similarity=-0.071 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 048269 189 DVGDLIEASKIWNLMTDEGFEPSIDVVDKMIETFFKINK-----DDEAMKVFQMMRVKRM 243 (465)
Q Consensus 189 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~ 243 (465)
+.++.+.|+.++..|.+.|..|....-..+..+.-.-|. ...|...++....-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 347888888888888888877655554444444444443 2334455555554453
No 392
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.06 E-value=1.3e+02 Score=22.22 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=27.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhcc
Q 048269 379 VGGLVKAGKSLDAAKYVERVMNRGVEVPRFDYNKFLHYYSNEE 421 (465)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (465)
+..+...++.-.|.++++.+.+.+...+..|....|+.+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344555667778888888877665556665555556665554
Done!