BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048274
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 56 PRANNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPEL-IKPPKILVIEGLHPMYDARV 114
P A + L E +A+ G+ VE P+Y+ P ++P ++++EG+ +Y +
Sbjct: 62 PDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKEL 121
Query: 115 RELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS-IEARKPDFDAYIDPQKQYAD 173
R+L+D +++D + +F +++RD+ ERG SLE + A +E KP +++P K+YAD
Sbjct: 122 RDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYAD 181
Query: 174 AVI 176
++
Sbjct: 182 VIV 184
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 56 PRANNFDLMYEQVKAMKDGVSVEKPIYNHVT-GLLDPPELIKPPKILVIEGLHPMYDARV 114
P A + +L+ + +K + +G +V+ P+Y+ V+ + + P +++ EG+ Y V
Sbjct: 88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEV 147
Query: 115 RELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS-IEARKPDFDAYIDPQKQYAD 173
R+L +++D + + + ++ RD++ERG LE I + I KP F+ + P K+YAD
Sbjct: 148 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 207
Query: 174 AVI 176
+I
Sbjct: 208 VII 210
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 56 PRANNFDLMYEQVKAMKDGVSVEKPIYNHVT-GLLDPPELIKPPKILVIEGLHPMYDARV 114
P A + +L+ + +K + +G +V+ P+Y+ V+ + + P +++ EG+ Y V
Sbjct: 86 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEV 145
Query: 115 RELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS-IEARKPDFDAYIDPQKQYAD 173
R+L +++D + + + ++ RD++ERG LE I + I KP F+ + P K+YAD
Sbjct: 146 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 205
Query: 174 AVI 176
+I
Sbjct: 206 VII 208
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 56 PRANNFDLMYEQVKAMKDGVSVEKPIYNHVT-GLLDPPELIKPPKILVIEGLHPMYDARV 114
P A + DLM+ +K + +G +VE P Y+ VT L ++ P +++ EG+ Y +
Sbjct: 91 PDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEI 150
Query: 115 RELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEA-RKPDFDAYIDPQKQYAD 173
R++ +++D ++V+ + ++ RD+ RG LE I KP F+ + P K+YAD
Sbjct: 151 RDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYAD 209
Query: 174 AVI 176
+I
Sbjct: 210 VII 212
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 47 KEKGVTALDPRANNFDL--MYEQVKAMKDGV-SVEKPIYNHVT--GLLDPPELIKPPKIL 101
KE+G+ ++D+ + + V +K GV +V P+Y+H+ + D + + P IL
Sbjct: 129 KERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDIL 188
Query: 102 VIEGL----------HPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTER 143
++EGL H + V + +DFSIY+D ++ W I R + R
Sbjct: 189 ILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR 240
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 42 DRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGV-SVEKPIYNHVT--GLLDPPELIKPP 98
+R K+KG P + + + + V +K GV +V P+Y+H+ + D + + P
Sbjct: 138 ERGLXKKKGF----PESYDXHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 193
Query: 99 KILVIEGL----------HPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTER 143
IL++EGL H + V + +DFSIY+D ++ W I R + R
Sbjct: 194 DILILEGLNVLQSGXDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFR 248
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 56 PRANNFDLMYEQVKAMKDGVS-VEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDA 112
P + N + V ++K G P+Y+H+ + P ++++ P IL++EGL+ +
Sbjct: 150 PESYNRRALMRFVTSVKSGSDYAXAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209
Query: 113 ---RVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQK 169
V +L DFS+Y+D E W + R + R + A E+ + A+ D Q
Sbjct: 210 PTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAF----ADPESHFHHYAAFSDSQA 265
Query: 170 QYA-----------DAVIEVLPTQ-----LIPDDNEGKVLRVRL 197
A + V +LPT+ ++ D + + R+RL
Sbjct: 266 VVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSINRLRL 309
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 56 PRANNFDLMYEQVKAMKDGVSVE-KPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDA 112
P + N + V ++K G P+Y+H+ + P ++++ P IL++EGL+ +
Sbjct: 160 PESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 219
Query: 113 ---RVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQK 169
V +L DFS+Y+D E W + R + R + A E+ + A+ D Q
Sbjct: 220 PTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAF----ADPESHFHHYAAFSDSQA 275
Query: 170 QYA-----------DAVIEVLPTQ-----LIPDDNEGKVLRVRL 197
A + V +LPT+ ++ D + + R+RL
Sbjct: 276 VVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSINRLRL 319
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 56 PRANNFDLMYEQVKAMKDGVSVE-KPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDA 112
P + N + V ++K G P+Y+H+ + P ++++ P IL++EGL+ +
Sbjct: 150 PESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209
Query: 113 ---RVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQK 169
V +L DFS+Y+D E W + R + R + A E+ + A+ D Q
Sbjct: 210 PTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAF----ADPESHFHHYAAFSDSQA 265
Query: 170 QYA-----------DAVIEVLPTQ-----LIPDDNEGKVLRVRL 197
A + V +LPT+ ++ D + + R+RL
Sbjct: 266 VVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSINRLRL 309
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 19/90 (21%)
Query: 68 VKAMKDGV-SVEKPIYNH-----VTGLLDPPELIKPPKILVIEGLHPM----------YD 111
+ A+K G +V P+Y+H V G E++ P I+++EGL+ +
Sbjct: 164 LNAIKSGQRNVRIPVYSHHYYDIVRGQY---EIVDQPDIVILEGLNILQTGVRKTLQQLQ 220
Query: 112 ARVRELLDFSIYLDISNEVKFAWKIQRDMT 141
V + DFS+++D +V W I R ++
Sbjct: 221 VFVSDFFDFSLFVDAQAQVIQKWYIDRVLS 250
>pdb|1FB9|A Chain A, Effects Of S-Sulfonation On The Solution Structure Of
Salmon Calcitonin
Length = 33
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 271 SNLSTKFYGEVTQQMLKHADFPGSNNGTG 299
SNLST G+++Q++ K +P +N G+G
Sbjct: 2 SNLSTXVLGKLSQELHKLQTYPRTNTGSG 30
>pdb|2GLH|A Chain A, Solution Conformation Of Salmon Calcitonin In Sodium
Dodecyl Sulfate Micelles
Length = 33
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 271 SNLSTKFYGEVTQQMLKHADFPGSNNGTG 299
SNLST G+++Q++ K +P +N G+G
Sbjct: 2 SNLSTCVLGKLSQELHKLQTYPRTNTGSG 30
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 63 LMYEQVKAMKDGVSVEKPIYNHVTGLLDPPEL-IKPPKILVIEGLHPMYDARVRELLDFS 121
L ++ + +K + P Y+H T + + + IEG+ + R DF
Sbjct: 89 LTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDXIXIEGVF-LQRKEWRPFFDFV 147
Query: 122 IYLDISNEVKFA 133
+YLD E++FA
Sbjct: 148 VYLDCPREIRFA 159
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 169 KQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPV 209
KQ D V++ LPT L G +RL +EGVK +S +
Sbjct: 175 KQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSL 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,693,402
Number of Sequences: 62578
Number of extensions: 474012
Number of successful extensions: 995
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 17
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)