Query 048274
Match_columns 329
No_of_seqs 258 out of 1471
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02348 phosphoribulokinase 100.0 3E-102 8E-107 758.7 31.0 327 2-328 49-393 (395)
2 PRK07429 phosphoribulokinase; 100.0 8.7E-80 1.9E-84 594.2 27.7 313 2-324 8-326 (327)
3 cd02026 PRK Phosphoribulokinas 100.0 1.6E-65 3.4E-70 484.2 22.5 272 4-275 1-273 (273)
4 cd02029 PRK_like Phosphoribulo 100.0 5.2E-56 1.1E-60 415.1 14.5 225 4-238 1-263 (277)
5 PRK15453 phosphoribulokinase; 100.0 6.7E-54 1.5E-58 403.6 14.9 224 3-236 6-267 (290)
6 COG0572 Udk Uridine kinase [Nu 100.0 3.9E-44 8.6E-49 325.9 13.7 183 3-185 9-196 (218)
7 COG3954 PrkB Phosphoribulokina 100.0 2.2E-42 4.7E-47 307.3 7.1 221 3-236 6-267 (289)
8 PF00485 PRK: Phosphoribulokin 100.0 2E-40 4.4E-45 297.1 9.4 181 4-184 1-193 (194)
9 PTZ00301 uridine kinase; Provi 100.0 8.7E-38 1.9E-42 285.0 14.4 178 2-179 3-189 (210)
10 cd02028 UMPK_like Uridine mono 100.0 1.6E-33 3.5E-38 250.5 11.9 171 4-177 1-178 (179)
11 PLN02318 phosphoribulokinase/u 100.0 3.2E-31 6.9E-36 269.7 13.0 170 2-178 65-238 (656)
12 PRK05439 pantothenate kinase; 100.0 3.1E-30 6.8E-35 247.4 14.5 181 2-183 86-302 (311)
13 cd02025 PanK Pantothenate kina 100.0 4.2E-30 9.2E-35 235.7 14.0 176 4-180 1-211 (220)
14 PRK05480 uridine/cytidine kina 100.0 5E-30 1.1E-34 231.8 14.1 178 2-179 6-188 (209)
15 cd02023 UMPK Uridine monophosp 100.0 1.1E-28 2.3E-33 221.1 14.0 176 4-179 1-181 (198)
16 TIGR00554 panK_bact pantothena 100.0 9.3E-29 2E-33 235.4 14.2 181 2-183 62-282 (290)
17 TIGR00235 udk uridine kinase. 100.0 5.4E-28 1.2E-32 218.7 13.3 176 3-178 7-187 (207)
18 KOG4203 Armadillo/beta-Catenin 99.9 3.3E-27 7.2E-32 237.7 1.2 306 3-315 45-366 (473)
19 PRK06696 uridine kinase; Valid 99.9 2E-25 4.3E-30 204.4 12.3 177 2-180 22-211 (223)
20 PRK07667 uridine kinase; Provi 99.9 3.1E-24 6.8E-29 192.7 11.8 166 2-177 17-193 (193)
21 cd02024 NRK1 Nicotinamide ribo 99.9 1.9E-24 4.2E-29 193.9 10.0 155 4-164 1-179 (187)
22 PRK09270 nucleoside triphospha 99.9 2.8E-23 6E-28 190.9 14.7 177 2-181 33-223 (229)
23 COG1072 CoaA Panthothenate kin 99.9 2.2E-21 4.8E-26 181.5 11.5 158 2-161 82-254 (283)
24 PRK06547 hypothetical protein; 99.8 1.6E-19 3.4E-24 160.0 11.5 149 2-177 15-171 (172)
25 PLN03046 D-glycerate 3-kinase; 99.8 4.8E-19 1E-23 175.0 11.7 165 3-167 213-431 (460)
26 PLN02796 D-glycerate 3-kinase 99.7 2.6E-17 5.6E-22 159.8 11.6 164 3-166 101-318 (347)
27 PRK08233 hypothetical protein; 99.7 9.5E-17 2.1E-21 140.5 11.7 148 3-178 4-160 (182)
28 cd02022 DPCK Dephospho-coenzym 99.6 1E-16 2.2E-21 142.1 4.8 161 4-179 1-174 (179)
29 PF01121 CoaE: Dephospho-CoA k 99.6 3.9E-17 8.4E-22 145.9 0.9 160 4-179 2-175 (180)
30 PRK00081 coaE dephospho-CoA ki 99.6 8E-16 1.7E-20 138.4 5.0 163 1-179 1-177 (194)
31 PRK14733 coaE dephospho-CoA ki 99.6 1.2E-15 2.5E-20 138.9 5.8 162 3-180 7-182 (204)
32 PRK14730 coaE dephospho-CoA ki 99.6 9.5E-16 2.1E-20 138.3 4.9 162 3-180 2-179 (195)
33 PRK14734 coaE dephospho-CoA ki 99.6 2.6E-15 5.6E-20 135.9 6.4 163 2-180 1-179 (200)
34 PLN02422 dephospho-CoA kinase 99.6 2.4E-15 5.2E-20 139.3 4.8 165 1-180 1-179 (232)
35 KOG3308 Uncharacterized protei 99.5 1.2E-14 2.7E-19 130.6 7.6 168 3-179 5-187 (225)
36 PTZ00451 dephospho-CoA kinase; 99.5 5.2E-15 1.1E-19 138.1 5.3 164 3-179 2-189 (244)
37 PRK14732 coaE dephospho-CoA ki 99.5 3.9E-15 8.4E-20 134.6 4.3 162 4-180 1-175 (196)
38 KOG2702 Predicted panthothenat 99.5 2E-14 4.4E-19 131.8 8.6 174 2-178 119-320 (323)
39 COG0237 CoaE Dephospho-CoA kin 99.5 1E-14 2.2E-19 132.5 5.3 168 1-181 1-178 (201)
40 PRK14731 coaE dephospho-CoA ki 99.5 2.3E-14 4.9E-19 130.3 5.2 163 2-180 5-187 (208)
41 COG4240 Predicted kinase [Gene 99.5 9E-14 2E-18 127.4 8.3 172 3-174 51-278 (300)
42 TIGR00152 dephospho-CoA kinase 99.5 2.9E-14 6.4E-19 127.0 3.6 162 4-180 1-177 (188)
43 KOG2878 Predicted kinase [Gene 99.5 3.8E-13 8.2E-18 121.3 10.5 163 3-165 32-253 (282)
44 PRK03333 coaE dephospho-CoA ki 99.4 3.8E-14 8.2E-19 140.8 3.3 165 2-181 1-178 (395)
45 KOG3220 Similar to bacterial d 99.3 5.7E-13 1.2E-17 120.0 3.7 164 3-181 2-180 (225)
46 cd02020 CMPK Cytidine monophos 99.2 1.9E-11 4E-16 103.0 7.5 142 4-178 1-146 (147)
47 PRK13477 bifunctional pantoate 99.2 7.3E-11 1.6E-15 120.5 8.3 170 3-180 285-487 (512)
48 PF13207 AAA_17: AAA domain; P 99.1 6.6E-11 1.4E-15 97.0 3.8 118 4-148 1-120 (121)
49 PRK01184 hypothetical protein; 99.1 4.1E-10 9E-15 99.5 7.5 154 4-180 3-163 (184)
50 PRK06217 hypothetical protein; 99.0 3.1E-09 6.7E-14 94.3 10.0 103 5-141 4-107 (183)
51 TIGR02173 cyt_kin_arch cytidyl 98.9 9.8E-10 2.1E-14 95.1 5.3 121 4-156 2-126 (171)
52 PRK06762 hypothetical protein; 98.9 1.3E-08 2.8E-13 88.4 11.0 126 1-158 1-135 (166)
53 PRK08118 topology modulation p 98.9 6.7E-09 1.5E-13 91.5 7.8 108 1-148 1-109 (167)
54 PRK04182 cytidylate kinase; Pr 98.8 7E-09 1.5E-13 90.3 6.8 146 4-179 2-156 (180)
55 PRK07261 topology modulation p 98.8 2E-08 4.3E-13 88.7 7.6 108 5-151 3-112 (171)
56 cd02019 NK Nucleoside/nucleoti 98.7 2E-08 4.2E-13 75.8 5.3 59 4-126 1-63 (69)
57 PRK00023 cmk cytidylate kinase 98.7 5.3E-08 1.1E-12 89.8 8.8 168 2-180 4-205 (225)
58 TIGR00017 cmk cytidylate kinas 98.7 1.5E-07 3.3E-12 86.4 11.4 77 100-178 122-201 (217)
59 COG1102 Cmk Cytidylate kinase 98.7 6.2E-08 1.3E-12 85.1 7.2 145 4-178 2-154 (179)
60 PRK05541 adenylylsulfate kinas 98.6 5.8E-08 1.3E-12 85.3 6.9 140 3-179 8-154 (176)
61 PRK00625 shikimate kinase; Pro 98.5 1.4E-07 3E-12 83.9 6.4 138 4-178 2-149 (173)
62 PRK08356 hypothetical protein; 98.5 5E-07 1.1E-11 81.0 9.1 160 3-178 6-175 (195)
63 PF13238 AAA_18: AAA domain; P 98.5 2.9E-08 6.3E-13 81.2 0.6 111 5-139 1-113 (129)
64 PRK04040 adenylate kinase; Pro 98.5 1.4E-06 3E-11 78.4 11.3 39 1-40 1-40 (188)
65 COG0283 Cmk Cytidylate kinase 98.4 1.7E-06 3.7E-11 79.2 10.3 75 99-176 121-198 (222)
66 PRK13949 shikimate kinase; Pro 98.4 7.6E-07 1.6E-11 78.6 7.8 36 1-40 1-37 (169)
67 PRK14528 adenylate kinase; Pro 98.4 6.3E-07 1.4E-11 80.1 7.2 143 1-167 1-155 (186)
68 cd00464 SK Shikimate kinase (S 98.4 1.1E-06 2.4E-11 74.6 8.0 137 5-179 2-148 (154)
69 PRK00131 aroK shikimate kinase 98.4 1E-06 2.3E-11 76.0 7.2 35 3-40 5-40 (175)
70 PRK09518 bifunctional cytidyla 98.4 2.4E-06 5.1E-11 91.2 11.0 167 4-181 3-216 (712)
71 PRK14737 gmk guanylate kinase; 98.3 1.8E-06 4E-11 77.4 8.3 155 3-179 5-169 (186)
72 PRK11860 bifunctional 3-phosph 98.3 1.6E-06 3.6E-11 91.6 9.0 166 3-179 443-638 (661)
73 PRK14531 adenylate kinase; Pro 98.3 1.4E-06 3E-11 77.4 6.8 38 1-41 1-39 (183)
74 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 1.3E-06 2.8E-11 76.7 6.0 34 4-40 1-35 (183)
75 cd01428 ADK Adenylate kinase ( 98.2 2.8E-06 6E-11 75.0 6.8 34 5-41 2-36 (194)
76 PRK14530 adenylate kinase; Pro 98.2 2.9E-06 6.3E-11 77.2 6.8 38 1-41 2-40 (215)
77 PRK05057 aroK shikimate kinase 98.2 5.7E-06 1.2E-10 73.1 8.2 139 3-178 5-153 (172)
78 PRK03839 putative kinase; Prov 98.2 7.4E-06 1.6E-10 72.1 8.4 97 4-138 2-100 (180)
79 PRK13946 shikimate kinase; Pro 98.1 6.2E-06 1.3E-10 73.4 7.3 140 2-178 10-158 (184)
80 TIGR01360 aden_kin_iso1 adenyl 98.1 1.1E-05 2.3E-10 70.8 8.5 35 3-40 4-39 (188)
81 PRK03731 aroL shikimate kinase 98.1 7.2E-06 1.6E-10 71.4 7.2 139 1-178 1-153 (171)
82 PRK13947 shikimate kinase; Pro 98.1 2E-05 4.2E-10 68.5 9.8 36 1-40 1-37 (171)
83 TIGR02322 phosphon_PhnN phosph 98.1 3.8E-05 8.3E-10 67.3 11.1 70 97-178 89-161 (179)
84 TIGR03263 guanyl_kin guanylate 98.1 1.4E-05 3E-10 70.0 8.0 72 97-179 90-165 (180)
85 PLN02200 adenylate kinase fami 98.1 5.2E-06 1.1E-10 77.1 5.4 113 3-139 44-167 (234)
86 PRK10078 ribose 1,5-bisphospho 98.0 2.4E-05 5.2E-10 69.5 9.2 138 1-156 1-145 (186)
87 PRK08154 anaerobic benzoate ca 98.0 9.9E-06 2.1E-10 78.1 6.4 140 3-179 134-284 (309)
88 TIGR01313 therm_gnt_kin carboh 98.0 6E-05 1.3E-09 65.1 10.5 33 5-40 1-34 (163)
89 PRK13808 adenylate kinase; Pro 98.0 1E-05 2.3E-10 78.9 6.0 34 5-41 3-37 (333)
90 PHA02530 pseT polynucleotide k 98.0 4E-05 8.7E-10 72.7 9.4 38 1-40 1-39 (300)
91 cd02021 GntK Gluconate kinase 97.9 8.3E-05 1.8E-09 63.2 10.1 34 4-40 1-35 (150)
92 PRK00889 adenylylsulfate kinas 97.9 2.4E-05 5.1E-10 68.6 6.6 37 3-39 5-44 (175)
93 PRK00279 adk adenylate kinase; 97.9 2.1E-05 4.6E-10 71.5 6.4 33 5-40 3-36 (215)
94 PRK02496 adk adenylate kinase; 97.9 1.4E-05 3E-10 70.6 5.0 36 1-40 1-37 (184)
95 PRK03846 adenylylsulfate kinas 97.9 3.7E-05 8.1E-10 69.0 7.5 38 3-40 25-65 (198)
96 TIGR01351 adk adenylate kinase 97.9 2.9E-05 6.3E-10 70.3 6.3 34 5-41 2-36 (210)
97 PRK14527 adenylate kinase; Pro 97.9 2.7E-05 5.9E-10 69.4 6.0 35 3-40 7-42 (191)
98 TIGR03575 selen_PSTK_euk L-ser 97.8 3.6E-05 7.7E-10 75.4 6.9 143 4-154 1-187 (340)
99 PRK14532 adenylate kinase; Pro 97.8 7.9E-05 1.7E-09 65.9 8.6 34 5-41 3-37 (188)
100 PRK12269 bifunctional cytidyla 97.8 3.5E-05 7.5E-10 83.7 6.5 77 101-181 192-270 (863)
101 PRK13948 shikimate kinase; Pro 97.8 5E-05 1.1E-09 68.1 6.4 137 3-178 11-157 (182)
102 COG1936 Predicted nucleotide k 97.8 8.9E-05 1.9E-09 66.0 7.6 115 4-157 2-117 (180)
103 PRK00300 gmk guanylate kinase; 97.7 9.5E-05 2.1E-09 66.1 7.4 71 98-179 95-169 (205)
104 PF13671 AAA_33: AAA domain; P 97.7 1.5E-05 3.2E-10 66.8 1.8 34 4-40 1-35 (143)
105 COG0703 AroK Shikimate kinase 97.7 6.5E-05 1.4E-09 66.8 5.5 139 3-178 3-151 (172)
106 PLN02199 shikimate kinase 97.7 9.1E-05 2E-09 71.3 6.6 139 3-177 103-257 (303)
107 PTZ00088 adenylate kinase 1; P 97.6 0.0002 4.4E-09 66.4 8.4 34 5-41 9-43 (229)
108 TIGR00041 DTMP_kinase thymidyl 97.6 0.00061 1.3E-08 60.3 11.1 27 3-29 4-31 (195)
109 COG0563 Adk Adenylate kinase a 97.6 9.4E-05 2E-09 66.1 5.4 115 5-140 3-129 (178)
110 smart00072 GuKc Guanylate kina 97.6 0.0004 8.6E-09 61.7 9.3 157 1-179 1-167 (184)
111 TIGR00455 apsK adenylylsulfate 97.6 0.00029 6.3E-09 62.3 8.4 38 3-40 19-59 (184)
112 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00024 5.3E-09 66.0 8.2 35 4-38 1-38 (249)
113 PF01583 APS_kinase: Adenylyls 97.6 7.6E-05 1.6E-09 65.5 4.5 38 3-40 3-43 (156)
114 COG3265 GntK Gluconate kinase 97.6 0.00017 3.7E-09 62.8 6.4 105 9-138 2-111 (161)
115 PRK13951 bifunctional shikimat 97.5 0.00018 4E-09 73.7 6.9 126 5-164 3-138 (488)
116 PRK09825 idnK D-gluconate kina 97.5 0.00061 1.3E-08 60.5 9.1 36 3-41 4-40 (176)
117 cd01672 TMPK Thymidine monopho 97.5 0.00017 3.7E-09 63.2 5.5 26 4-29 2-28 (200)
118 PRK00091 miaA tRNA delta(2)-is 97.5 0.00025 5.5E-09 68.6 6.6 38 1-41 3-43 (307)
119 cd00227 CPT Chloramphenicol (C 97.4 0.00028 6.1E-09 62.0 6.3 38 3-41 3-41 (175)
120 PRK00698 tmk thymidylate kinas 97.4 0.00051 1.1E-08 61.1 7.7 27 2-28 3-30 (205)
121 PRK13975 thymidylate kinase; P 97.4 0.00064 1.4E-08 60.2 7.9 27 1-27 1-28 (196)
122 PF08433 KTI12: Chromatin asso 97.4 0.00058 1.3E-08 64.9 7.7 118 3-152 2-132 (270)
123 PRK14021 bifunctional shikimat 97.3 0.00039 8.4E-09 72.2 6.6 139 3-179 7-159 (542)
124 COG1428 Deoxynucleoside kinase 97.3 0.00051 1.1E-08 63.0 6.5 26 3-28 5-31 (216)
125 KOG3354 Gluconate kinase [Carb 97.3 0.00016 3.5E-09 63.5 3.1 38 2-42 12-50 (191)
126 PRK14526 adenylate kinase; Pro 97.3 0.00049 1.1E-08 63.0 6.2 34 5-41 3-37 (211)
127 KOG3079 Uridylate kinase/adeny 97.2 0.00042 9E-09 62.3 4.5 114 2-142 8-137 (195)
128 PRK13973 thymidylate kinase; P 97.2 0.0014 2.9E-08 59.8 7.5 35 1-35 1-37 (213)
129 PHA00729 NTP-binding motif con 97.1 0.0017 3.7E-08 60.3 7.9 113 4-152 19-148 (226)
130 PF00625 Guanylate_kin: Guanyl 97.1 0.00046 1E-08 61.0 4.0 155 2-179 2-167 (183)
131 COG0194 Gmk Guanylate kinase [ 97.1 0.0012 2.5E-08 59.6 6.5 149 2-178 4-166 (191)
132 COG0378 HypB Ni2+-binding GTPa 97.1 0.0016 3.5E-08 59.0 7.3 41 3-43 14-56 (202)
133 cd02030 NDUO42 NADH:Ubiquinone 97.1 0.0013 2.9E-08 60.1 6.7 56 118-178 143-201 (219)
134 cd02027 APSK Adenosine 5'-phos 97.1 0.001 2.3E-08 57.2 5.6 37 4-40 1-40 (149)
135 cd01673 dNK Deoxyribonucleosid 97.1 0.00073 1.6E-08 59.9 4.6 46 117-167 124-171 (193)
136 PF01202 SKI: Shikimate kinase 97.0 0.00044 9.5E-09 60.0 2.8 130 11-178 1-141 (158)
137 PF00406 ADK: Adenylate kinase 97.0 0.0011 2.4E-08 56.6 5.0 31 7-40 1-32 (151)
138 PRK05537 bifunctional sulfate 97.0 0.0024 5.1E-08 66.8 8.3 35 4-38 394-432 (568)
139 PLN02674 adenylate kinase 97.0 0.0018 3.8E-08 60.8 6.6 35 4-41 33-68 (244)
140 PF00448 SRP54: SRP54-type pro 96.9 0.00062 1.4E-08 61.6 2.7 38 3-40 2-42 (196)
141 KOG3347 Predicted nucleotide k 96.9 0.0087 1.9E-07 52.5 9.4 114 3-154 8-124 (176)
142 PRK05506 bifunctional sulfate 96.9 0.0037 8E-08 66.0 8.6 39 2-40 460-501 (632)
143 PRK05416 glmZ(sRNA)-inactivati 96.8 0.0045 9.7E-08 59.5 8.4 25 2-29 6-30 (288)
144 PLN02459 probable adenylate ki 96.8 0.0036 7.8E-08 59.3 7.3 109 5-138 32-153 (261)
145 PF03668 ATP_bind_2: P-loop AT 96.8 0.0027 5.9E-08 60.7 6.4 56 118-181 81-141 (284)
146 PRK11545 gntK gluconate kinase 96.8 0.0049 1.1E-07 53.9 7.6 30 8-40 1-31 (163)
147 PLN02842 nucleotide kinase 96.8 0.0026 5.7E-08 65.4 6.5 31 7-40 2-33 (505)
148 PRK14738 gmk guanylate kinase; 96.7 0.0036 7.7E-08 56.8 6.3 23 2-27 13-35 (206)
149 PRK14529 adenylate kinase; Pro 96.6 0.0068 1.5E-07 56.2 7.4 106 5-138 3-126 (223)
150 TIGR03499 FlhF flagellar biosy 96.5 0.0024 5.3E-08 60.9 3.7 38 3-40 195-237 (282)
151 COG4639 Predicted kinase [Gene 96.4 0.014 3.1E-07 51.3 7.7 126 1-156 1-131 (168)
152 PF01591 6PF2K: 6-phosphofruct 96.4 0.0063 1.4E-07 56.4 5.7 147 2-168 12-178 (222)
153 KOG3062 RNA polymerase II elon 96.3 0.041 8.8E-07 51.3 10.6 121 4-152 3-137 (281)
154 PF03308 ArgK: ArgK protein; 96.3 0.0026 5.7E-08 60.1 2.6 108 3-128 30-153 (266)
155 smart00382 AAA ATPases associa 96.2 0.0034 7.3E-08 50.2 2.6 40 2-41 2-44 (148)
156 cd03115 SRP The signal recogni 96.2 0.0039 8.5E-08 54.3 3.1 37 3-39 1-40 (173)
157 TIGR00174 miaA tRNA isopenteny 96.1 0.0048 1E-07 59.2 3.6 35 4-41 1-38 (287)
158 PRK09435 membrane ATPase/prote 96.1 0.0044 9.5E-08 60.7 3.3 38 3-40 57-97 (332)
159 PLN02840 tRNA dimethylallyltra 96.0 0.0041 9E-08 62.6 2.9 37 2-41 21-58 (421)
160 PRK04220 2-phosphoglycerate ki 96.0 0.0044 9.6E-08 59.9 2.8 35 3-39 93-128 (301)
161 PF06414 Zeta_toxin: Zeta toxi 96.0 0.0064 1.4E-07 54.6 3.6 39 3-41 16-55 (199)
162 COG0125 Tmk Thymidylate kinase 96.0 0.023 4.9E-07 52.2 7.1 28 2-29 3-31 (208)
163 TIGR00064 ftsY signal recognit 95.9 0.0055 1.2E-07 58.3 3.1 38 3-40 73-113 (272)
164 TIGR01425 SRP54_euk signal rec 95.9 0.0057 1.2E-07 61.9 3.2 37 3-39 101-140 (429)
165 PF03029 ATP_bind_1: Conserved 95.9 0.0038 8.2E-08 58.2 1.8 32 7-38 1-35 (238)
166 KOG1384 tRNA delta(2)-isopente 95.9 0.056 1.2E-06 52.7 9.8 137 3-154 8-175 (348)
167 PRK13974 thymidylate kinase; P 95.9 0.016 3.5E-07 52.7 5.9 26 3-28 4-30 (212)
168 PRK10751 molybdopterin-guanine 95.9 0.0076 1.6E-07 53.8 3.4 35 2-36 6-43 (173)
169 PRK13768 GTPase; Provisional 95.8 0.0075 1.6E-07 56.6 3.5 37 1-37 1-40 (253)
170 PRK12338 hypothetical protein; 95.8 0.0056 1.2E-07 59.6 2.4 35 3-40 5-40 (319)
171 PRK13976 thymidylate kinase; P 95.7 0.016 3.4E-07 53.0 5.0 25 4-28 2-27 (209)
172 COG1855 ATPase (PilT family) [ 95.7 0.033 7.2E-07 56.6 7.6 31 5-35 266-297 (604)
173 COG0529 CysC Adenylylsulfate k 95.7 0.0097 2.1E-07 53.5 3.4 36 3-38 24-62 (197)
174 PRK10416 signal recognition pa 95.7 0.0082 1.8E-07 58.4 3.2 38 3-40 115-155 (318)
175 PF07931 CPT: Chloramphenicol 95.7 0.005 1.1E-07 54.9 1.5 37 3-40 2-39 (174)
176 PRK12726 flagellar biosynthesi 95.6 0.0092 2E-07 59.6 3.4 38 2-39 206-246 (407)
177 PF13189 Cytidylate_kin2: Cyti 95.6 0.031 6.6E-07 49.6 6.4 71 101-178 98-177 (179)
178 COG1703 ArgK Putative periplas 95.6 0.0087 1.9E-07 57.7 2.9 107 3-127 52-174 (323)
179 PRK12723 flagellar biosynthesi 95.6 0.01 2.2E-07 59.3 3.4 37 3-39 175-218 (388)
180 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.011 2.3E-07 45.0 2.7 38 4-41 1-39 (99)
181 COG1763 MobB Molybdopterin-gua 95.5 0.013 2.7E-07 51.8 3.4 35 1-35 1-38 (161)
182 PRK14729 miaA tRNA delta(2)-is 95.5 0.0078 1.7E-07 58.2 2.3 36 2-40 4-39 (300)
183 COG1419 FlhF Flagellar GTP-bin 95.5 0.012 2.5E-07 59.0 3.5 72 2-73 203-281 (407)
184 PRK06761 hypothetical protein; 95.5 0.012 2.7E-07 56.3 3.6 29 1-29 2-31 (282)
185 PF02223 Thymidylate_kin: Thym 95.5 0.017 3.6E-07 50.9 4.2 47 117-165 118-164 (186)
186 PLN02165 adenylate isopentenyl 95.5 0.0082 1.8E-07 58.8 2.4 33 3-38 44-77 (334)
187 PRK11889 flhF flagellar biosyn 95.5 0.01 2.2E-07 59.7 3.0 37 3-39 242-281 (436)
188 PRK10867 signal recognition pa 95.5 0.011 2.3E-07 60.0 3.2 37 3-39 101-141 (433)
189 COG1618 Predicted nucleotide k 95.3 0.013 2.7E-07 52.0 2.8 29 1-29 4-33 (179)
190 PRK05703 flhF flagellar biosyn 95.3 0.014 3E-07 59.0 3.3 36 3-38 222-262 (424)
191 PRK14974 cell division protein 95.3 0.013 2.9E-07 57.4 3.0 37 3-39 141-180 (336)
192 PRK12339 2-phosphoglycerate ki 95.2 0.014 3.1E-07 52.9 2.8 34 3-38 4-38 (197)
193 PRK14493 putative bifunctional 95.2 0.017 3.6E-07 55.1 3.3 36 1-37 1-38 (274)
194 COG4088 Predicted nucleotide k 95.1 0.014 3E-07 53.9 2.4 34 3-36 2-36 (261)
195 TIGR00750 lao LAO/AO transport 95.1 0.018 3.9E-07 55.3 3.3 39 2-40 34-75 (300)
196 cd00820 PEPCK_HprK Phosphoenol 95.1 0.019 4.1E-07 47.3 3.0 36 3-42 16-51 (107)
197 COG4618 ArpD ABC-type protease 95.0 0.016 3.6E-07 59.4 2.9 44 4-47 364-409 (580)
198 PLN02748 tRNA dimethylallyltra 95.0 0.017 3.6E-07 59.2 2.9 37 2-41 22-61 (468)
199 TIGR00101 ureG urease accessor 95.0 0.021 4.5E-07 51.7 3.2 39 3-41 2-42 (199)
200 PRK12724 flagellar biosynthesi 95.0 0.018 4E-07 58.1 3.2 38 3-40 224-265 (432)
201 PRK04296 thymidine kinase; Pro 95.0 0.051 1.1E-06 48.6 5.7 33 1-33 1-36 (190)
202 PF03205 MobB: Molybdopterin g 94.9 0.017 3.7E-07 49.5 2.5 27 3-29 1-28 (140)
203 TIGR00959 ffh signal recogniti 94.9 0.02 4.4E-07 57.9 3.3 36 3-38 100-139 (428)
204 PLN02772 guanylate kinase 94.9 0.1 2.2E-06 52.3 8.1 23 2-27 135-157 (398)
205 smart00763 AAA_PrkA PrkA AAA d 94.9 0.023 5E-07 56.2 3.6 37 2-38 78-121 (361)
206 PRK00771 signal recognition pa 94.9 0.021 4.5E-07 58.0 3.2 36 3-38 96-134 (437)
207 KOG1533 Predicted GTPase [Gene 94.9 0.025 5.5E-07 53.0 3.5 37 1-37 1-40 (290)
208 PRK13185 chlL protochlorophyll 94.8 0.023 5.1E-07 53.0 3.3 37 1-37 1-40 (270)
209 PF13173 AAA_14: AAA domain 94.8 0.024 5.3E-07 47.1 3.0 39 2-40 2-42 (128)
210 TIGR00176 mobB molybdopterin-g 94.8 0.019 4.2E-07 50.0 2.4 33 4-36 1-36 (155)
211 COG4619 ABC-type uncharacteriz 94.8 0.027 5.9E-07 50.6 3.3 38 4-41 31-70 (223)
212 COG4172 ABC-type uncharacteriz 94.7 0.046 9.9E-07 55.0 5.1 43 4-46 315-358 (534)
213 cd00071 GMPK Guanosine monopho 94.7 0.017 3.7E-07 49.1 1.8 22 4-25 1-23 (137)
214 COG1124 DppF ABC-type dipeptid 94.7 0.035 7.7E-07 52.1 4.1 36 4-39 35-72 (252)
215 PRK12727 flagellar biosynthesi 94.7 0.051 1.1E-06 56.5 5.5 38 3-40 351-393 (559)
216 COG3709 Uncharacterized compon 94.6 0.37 7.9E-06 43.0 9.9 57 95-157 91-150 (192)
217 cd01131 PilT Pilus retraction 94.6 0.03 6.5E-07 50.4 3.2 25 3-27 2-27 (198)
218 PRK06995 flhF flagellar biosyn 94.6 0.025 5.4E-07 58.1 2.9 37 3-39 257-298 (484)
219 PRK14722 flhF flagellar biosyn 94.6 0.026 5.6E-07 56.2 2.9 37 3-39 138-179 (374)
220 cd03114 ArgK-like The function 94.5 0.022 4.7E-07 49.2 2.1 34 4-37 1-37 (148)
221 cd03116 MobB Molybdenum is an 94.5 0.033 7E-07 48.9 3.2 35 3-37 2-39 (159)
222 COG0324 MiaA tRNA delta(2)-iso 94.5 0.025 5.4E-07 54.9 2.5 37 2-41 3-40 (308)
223 PRK11176 lipid transporter ATP 94.4 0.046 1E-06 56.7 4.6 34 4-37 371-406 (582)
224 COG1120 FepC ABC-type cobalami 94.4 0.03 6.4E-07 53.1 2.8 43 3-45 29-73 (258)
225 PF13521 AAA_28: AAA domain; P 94.4 0.019 4.2E-07 49.5 1.5 30 5-40 2-32 (163)
226 cd01120 RecA-like_NTPases RecA 94.3 0.033 7.2E-07 46.4 2.7 36 4-39 1-39 (165)
227 cd02034 CooC The accessory pro 94.3 0.039 8.4E-07 45.8 3.1 33 5-37 2-37 (116)
228 PTZ00322 6-phosphofructo-2-kin 94.2 0.13 2.8E-06 54.8 7.6 39 2-40 215-256 (664)
229 COG1341 Predicted GTPase or GT 94.2 0.041 9E-07 54.9 3.4 34 4-37 75-111 (398)
230 cd00009 AAA The AAA+ (ATPases 94.2 0.039 8.3E-07 44.6 2.7 37 3-39 20-59 (151)
231 PF00004 AAA: ATPase family as 94.1 0.036 7.9E-07 45.0 2.5 33 5-38 1-34 (132)
232 COG1126 GlnQ ABC-type polar am 94.1 0.042 9.1E-07 51.0 3.0 33 3-38 29-66 (240)
233 COG1136 SalX ABC-type antimicr 94.0 0.045 9.7E-07 50.9 3.2 35 4-41 33-72 (226)
234 COG4185 Uncharacterized protei 94.0 0.061 1.3E-06 47.8 3.7 57 1-68 1-59 (187)
235 cd02117 NifH_like This family 94.0 0.041 8.8E-07 49.7 2.7 36 3-38 1-39 (212)
236 PRK13233 nifH nitrogenase redu 93.9 0.051 1.1E-06 51.0 3.4 40 1-40 1-44 (275)
237 KOG1534 Putative transcription 93.9 0.068 1.5E-06 49.5 4.0 37 1-37 2-41 (273)
238 cd01130 VirB11-like_ATPase Typ 93.9 0.044 9.6E-07 48.6 2.7 26 2-27 25-51 (186)
239 PRK05800 cobU adenosylcobinami 93.9 0.042 9E-07 48.6 2.5 23 4-26 3-26 (170)
240 TIGR02203 MsbA_lipidA lipid A 93.8 0.065 1.4E-06 55.4 4.3 24 4-27 360-384 (571)
241 PRK14721 flhF flagellar biosyn 93.8 0.052 1.1E-06 54.9 3.4 38 3-40 192-234 (420)
242 PF05729 NACHT: NACHT domain 93.8 0.038 8.2E-07 46.5 2.1 26 3-28 1-27 (166)
243 PRK11174 cysteine/glutathione 93.8 0.072 1.6E-06 55.4 4.6 32 4-35 378-410 (588)
244 TIGR01287 nifH nitrogenase iro 93.8 0.042 9.2E-07 51.5 2.5 35 3-37 1-38 (275)
245 TIGR00073 hypB hydrogenase acc 93.7 0.078 1.7E-06 47.8 4.1 37 3-39 23-61 (207)
246 COG1123 ATPase components of v 93.7 0.047 1E-06 56.6 2.9 34 4-37 319-354 (539)
247 PRK10463 hydrogenase nickel in 93.6 0.062 1.3E-06 51.7 3.5 36 3-38 105-142 (290)
248 PRK07933 thymidylate kinase; V 93.6 0.054 1.2E-06 49.5 3.0 26 4-29 2-28 (213)
249 cd01129 PulE-GspE PulE/GspE Th 93.6 0.061 1.3E-06 50.9 3.3 35 3-37 81-116 (264)
250 cd03263 ABC_subfamily_A The AB 93.4 0.077 1.7E-06 47.9 3.6 23 4-26 30-53 (220)
251 PF13245 AAA_19: Part of AAA d 93.4 0.068 1.5E-06 41.1 2.7 23 3-25 11-35 (76)
252 COG3840 ThiQ ABC-type thiamine 93.4 0.077 1.7E-06 48.3 3.4 38 3-40 26-65 (231)
253 COG0444 DppD ABC-type dipeptid 93.3 0.063 1.4E-06 52.2 3.0 37 3-39 32-69 (316)
254 COG3172 NadR Predicted ATPase/ 93.3 0.056 1.2E-06 48.0 2.4 25 3-27 9-34 (187)
255 PF01935 DUF87: Domain of unkn 93.3 0.062 1.3E-06 48.9 2.7 36 2-37 23-62 (229)
256 cd03264 ABC_drug_resistance_li 93.3 0.082 1.8E-06 47.5 3.5 23 4-26 27-50 (211)
257 cd03225 ABC_cobalt_CbiO_domain 93.3 0.056 1.2E-06 48.5 2.4 24 3-26 28-52 (211)
258 cd01394 radB RadB. The archaea 93.2 0.088 1.9E-06 47.5 3.6 37 2-38 19-58 (218)
259 COG0541 Ffh Signal recognition 93.2 0.079 1.7E-06 53.5 3.4 37 3-39 101-140 (451)
260 PRK13232 nifH nitrogenase redu 93.1 0.069 1.5E-06 50.1 2.9 39 2-40 1-42 (273)
261 cd00544 CobU Adenosylcobinamid 93.1 0.076 1.7E-06 47.0 2.9 29 4-33 1-30 (169)
262 PRK14723 flhF flagellar biosyn 93.1 0.073 1.6E-06 57.5 3.3 37 3-39 186-227 (767)
263 TIGR01166 cbiO cobalt transpor 93.1 0.058 1.3E-06 47.7 2.2 23 4-26 20-43 (190)
264 PLN02924 thymidylate kinase 93.1 0.061 1.3E-06 49.6 2.3 30 2-31 16-46 (220)
265 cd03265 ABC_DrrA DrrA is the A 93.0 0.1 2.2E-06 47.2 3.7 25 3-27 27-52 (220)
266 PRK11022 dppD dipeptide transp 93.0 0.069 1.5E-06 51.9 2.7 23 4-26 35-58 (326)
267 PRK14490 putative bifunctional 92.9 0.077 1.7E-06 52.4 3.0 33 3-35 6-40 (369)
268 PRK11300 livG leucine/isoleuci 92.9 0.12 2.5E-06 47.9 4.0 24 3-26 32-56 (255)
269 PRK14495 putative molybdopteri 92.9 0.082 1.8E-06 53.7 3.2 36 1-37 1-39 (452)
270 PRK13235 nifH nitrogenase redu 92.8 0.082 1.8E-06 49.7 2.9 37 2-38 1-40 (274)
271 cd03256 ABC_PhnC_transporter A 92.8 0.07 1.5E-06 48.8 2.4 23 4-26 29-52 (241)
272 cd02040 NifH NifH gene encodes 92.8 0.085 1.8E-06 48.9 3.0 37 1-38 1-40 (270)
273 TIGR01188 drrA daunorubicin re 92.8 0.098 2.1E-06 50.1 3.5 24 4-27 21-45 (302)
274 TIGR00960 3a0501s02 Type II (G 92.8 0.073 1.6E-06 48.0 2.4 23 4-26 31-54 (216)
275 PF13401 AAA_22: AAA domain; P 92.8 0.053 1.1E-06 44.3 1.4 25 2-26 4-29 (131)
276 cd03292 ABC_FtsE_transporter F 92.8 0.076 1.7E-06 47.6 2.5 23 4-26 29-52 (214)
277 PRK12337 2-phosphoglycerate ki 92.8 0.077 1.7E-06 54.3 2.8 36 3-40 256-292 (475)
278 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.7 0.076 1.6E-06 47.9 2.4 23 4-26 32-55 (218)
279 PRK13851 type IV secretion sys 92.7 0.071 1.5E-06 52.5 2.4 26 2-27 162-188 (344)
280 PRK08099 bifunctional DNA-bind 92.7 0.06 1.3E-06 54.0 1.9 24 3-26 220-244 (399)
281 PRK01077 cobyrinic acid a,c-di 92.7 0.32 6.9E-06 49.5 7.1 34 1-35 3-40 (451)
282 KOG0635 Adenosine 5'-phosphosu 92.6 0.13 2.9E-06 45.3 3.7 35 4-38 33-70 (207)
283 TIGR02012 tigrfam_recA protein 92.6 0.12 2.7E-06 50.4 3.9 35 2-36 55-92 (321)
284 TIGR02673 FtsE cell division A 92.6 0.08 1.7E-06 47.6 2.4 23 4-26 30-53 (214)
285 PF12846 AAA_10: AAA-like doma 92.6 0.076 1.7E-06 49.2 2.3 31 5-35 4-35 (304)
286 COG3640 CooC CO dehydrogenase 92.6 0.098 2.1E-06 49.0 3.0 34 4-37 2-39 (255)
287 TIGR02868 CydC thiol reductant 92.6 0.11 2.4E-06 53.3 3.7 23 4-26 363-386 (529)
288 cd03258 ABC_MetN_methionine_tr 92.6 0.081 1.8E-06 48.2 2.4 24 4-27 33-57 (233)
289 PRK14494 putative molybdopteri 92.6 0.09 2E-06 48.9 2.7 32 3-34 2-36 (229)
290 COG4608 AppF ABC-type oligopep 92.5 0.099 2.2E-06 49.7 2.9 37 4-40 41-79 (268)
291 TIGR03864 PQQ_ABC_ATP ABC tran 92.5 0.14 3E-06 46.9 3.8 23 4-26 29-52 (236)
292 cd03259 ABC_Carb_Solutes_like 92.4 0.089 1.9E-06 47.3 2.5 24 3-26 27-51 (213)
293 cd03261 ABC_Org_Solvent_Resist 92.4 0.086 1.9E-06 48.2 2.4 23 4-26 28-51 (235)
294 TIGR02315 ABC_phnC phosphonate 92.4 0.087 1.9E-06 48.3 2.4 23 4-26 30-53 (243)
295 PHA03132 thymidine kinase; Pro 92.4 0.22 4.7E-06 52.3 5.6 32 3-35 258-290 (580)
296 TIGR02524 dot_icm_DotB Dot/Icm 92.4 0.11 2.4E-06 51.3 3.3 24 3-26 135-159 (358)
297 TIGR03410 urea_trans_UrtE urea 92.3 0.15 3.3E-06 46.4 3.9 23 4-26 28-51 (230)
298 KOG3877 NADH:ubiquinone oxidor 92.3 0.12 2.5E-06 49.7 3.1 39 2-40 71-110 (393)
299 cd03235 ABC_Metallic_Cations A 92.3 0.082 1.8E-06 47.5 2.1 23 4-26 27-50 (213)
300 PRK13764 ATPase; Provisional 92.3 0.11 2.3E-06 54.9 3.2 33 3-35 258-291 (602)
301 PRK13538 cytochrome c biogenes 92.3 0.15 3.2E-06 45.7 3.7 25 3-27 28-53 (204)
302 COG2019 AdkA Archaeal adenylat 92.3 0.24 5.2E-06 44.3 4.9 23 3-25 5-28 (189)
303 cd03260 ABC_PstB_phosphate_tra 92.3 0.077 1.7E-06 48.2 1.9 23 3-25 27-50 (227)
304 TIGR02782 TrbB_P P-type conjug 92.2 0.12 2.6E-06 49.8 3.3 25 2-26 132-157 (299)
305 PRK14250 phosphate ABC transpo 92.2 0.091 2E-06 48.4 2.3 23 4-26 31-54 (241)
306 TIGR02237 recomb_radB DNA repa 92.2 0.14 3.1E-06 45.7 3.5 37 2-38 12-51 (209)
307 cd03293 ABC_NrtD_SsuB_transpor 92.2 0.099 2.1E-06 47.3 2.5 23 4-26 32-55 (220)
308 TIGR00150 HI0065_YjeE ATPase, 92.1 0.09 2E-06 44.9 2.0 24 3-26 23-47 (133)
309 cd03226 ABC_cobalt_CbiO_domain 92.1 0.1 2.2E-06 46.7 2.4 23 4-26 28-51 (205)
310 TIGR03797 NHPM_micro_ABC2 NHPM 92.1 0.17 3.6E-06 53.9 4.5 23 4-26 481-504 (686)
311 PRK09473 oppD oligopeptide tra 92.1 0.098 2.1E-06 51.0 2.5 24 4-27 44-68 (330)
312 cd03269 ABC_putative_ATPase Th 92.1 0.07 1.5E-06 47.9 1.4 24 3-26 27-51 (210)
313 PHA02575 1 deoxynucleoside mon 92.1 0.1 2.3E-06 48.5 2.5 29 4-35 2-31 (227)
314 cd03224 ABC_TM1139_LivF_branch 92.1 0.095 2.1E-06 47.3 2.2 24 3-26 27-51 (222)
315 TIGR03015 pepcterm_ATPase puta 92.1 0.12 2.7E-06 47.7 3.1 24 4-27 45-69 (269)
316 cd03296 ABC_CysA_sulfate_impor 92.1 0.1 2.2E-06 47.9 2.5 24 3-26 29-53 (239)
317 COG0411 LivG ABC-type branched 92.0 0.089 1.9E-06 49.4 2.0 39 3-41 31-71 (250)
318 PF00437 T2SE: Type II/IV secr 92.0 0.12 2.7E-06 48.2 3.0 33 2-34 127-162 (270)
319 TIGR02211 LolD_lipo_ex lipopro 92.0 0.1 2.3E-06 47.1 2.4 23 4-26 33-56 (221)
320 TIGR03608 L_ocin_972_ABC putat 92.0 0.11 2.3E-06 46.3 2.5 24 3-26 25-49 (206)
321 cd03268 ABC_BcrA_bacitracin_re 92.0 0.17 3.6E-06 45.3 3.8 24 3-26 27-51 (208)
322 PRK11701 phnK phosphonate C-P 92.0 0.11 2.4E-06 48.3 2.6 24 4-27 34-58 (258)
323 cd03301 ABC_MalK_N The N-termi 92.0 0.11 2.4E-06 46.7 2.5 23 4-26 28-51 (213)
324 PRK11629 lolD lipoprotein tran 92.0 0.11 2.4E-06 47.5 2.5 23 4-26 37-60 (233)
325 PF07724 AAA_2: AAA domain (Cd 92.0 0.13 2.8E-06 45.6 2.9 37 4-40 5-45 (171)
326 PRK11308 dppF dipeptide transp 91.9 0.12 2.5E-06 50.4 2.8 24 4-27 43-67 (327)
327 PRK13537 nodulation ABC transp 91.9 0.16 3.5E-06 48.8 3.8 31 4-34 35-67 (306)
328 cd03295 ABC_OpuCA_Osmoprotecti 91.9 0.11 2.3E-06 47.8 2.4 24 3-26 28-52 (242)
329 PRK05342 clpX ATP-dependent pr 91.9 0.25 5.5E-06 49.8 5.3 23 4-26 110-133 (412)
330 COG1127 Ttg2A ABC-type transpo 91.9 0.13 2.9E-06 48.3 3.0 41 3-43 35-77 (263)
331 PF13555 AAA_29: P-loop contai 91.8 0.11 2.4E-06 38.7 2.0 14 4-17 25-38 (62)
332 KOG0744 AAA+-type ATPase [Post 91.8 0.18 3.9E-06 49.5 3.9 67 2-73 177-246 (423)
333 cd02032 Bchl_like This family 91.8 0.13 2.8E-06 48.0 2.9 34 4-37 2-38 (267)
334 COG1219 ClpX ATP-dependent pro 91.8 0.58 1.2E-05 46.0 7.3 101 5-105 100-233 (408)
335 TIGR03796 NHPM_micro_ABC1 NHPM 91.8 0.17 3.8E-06 53.9 4.2 23 4-26 507-530 (710)
336 cd03229 ABC_Class3 This class 91.8 0.12 2.6E-06 45.4 2.5 23 4-26 28-51 (178)
337 PRK14489 putative bifunctional 91.8 0.13 2.8E-06 50.9 2.9 35 3-37 206-243 (366)
338 COG4962 CpaF Flp pilus assembl 91.8 0.11 2.3E-06 51.2 2.3 33 4-37 175-208 (355)
339 cd03266 ABC_NatA_sodium_export 91.8 0.18 3.9E-06 45.4 3.7 24 3-26 32-56 (218)
340 PRK10575 iron-hydroxamate tran 91.8 0.1 2.2E-06 48.8 2.1 23 4-26 39-62 (265)
341 cd04163 Era Era subfamily. Er 91.7 0.15 3.3E-06 42.1 3.0 27 3-32 4-30 (168)
342 PRK10584 putative ABC transpor 91.7 0.12 2.6E-06 46.9 2.6 23 4-26 38-61 (228)
343 cd03230 ABC_DR_subfamily_A Thi 91.7 0.082 1.8E-06 46.2 1.4 24 3-26 27-51 (173)
344 cd03234 ABCG_White The White s 91.7 0.12 2.5E-06 47.1 2.4 24 3-26 34-58 (226)
345 COG4598 HisP ABC-type histidin 91.7 0.17 3.8E-06 46.0 3.4 23 4-26 34-56 (256)
346 cd03298 ABC_ThiQ_thiamine_tran 91.7 0.11 2.5E-06 46.5 2.3 24 3-26 25-49 (211)
347 PRK14247 phosphate ABC transpo 91.7 0.086 1.9E-06 48.6 1.5 23 4-26 31-54 (250)
348 cd03219 ABC_Mj1267_LivG_branch 91.7 0.11 2.4E-06 47.4 2.2 23 4-26 28-51 (236)
349 PRK14267 phosphate ABC transpo 91.7 0.12 2.5E-06 47.9 2.4 23 4-26 32-55 (253)
350 cd03222 ABC_RNaseL_inhibitor T 91.6 0.12 2.5E-06 46.1 2.2 24 3-26 26-50 (177)
351 PRK11264 putative amino-acid A 91.6 0.13 2.7E-06 47.5 2.6 23 4-26 31-54 (250)
352 COG4148 ModC ABC-type molybdat 91.6 0.15 3.2E-06 49.2 3.0 38 2-40 24-62 (352)
353 PRK15455 PrkA family serine pr 91.6 0.2 4.3E-06 52.7 4.2 37 2-38 103-140 (644)
354 PRK10818 cell division inhibit 91.6 0.16 3.5E-06 47.3 3.2 38 1-38 1-42 (270)
355 PRK13833 conjugal transfer pro 91.6 0.13 2.7E-06 50.4 2.6 24 2-25 144-168 (323)
356 TIGR02204 MsbA_rel ABC transpo 91.6 0.22 4.7E-06 51.6 4.5 32 4-35 368-401 (576)
357 PF02367 UPF0079: Uncharacteri 91.6 0.21 4.6E-06 42.1 3.6 24 3-26 16-40 (123)
358 cd03262 ABC_HisP_GlnQ_permease 91.6 0.13 2.7E-06 46.2 2.4 24 3-26 27-51 (213)
359 PRK15177 Vi polysaccharide exp 91.6 0.097 2.1E-06 47.5 1.7 23 4-26 15-38 (213)
360 COG2074 2-phosphoglycerate kin 91.5 0.16 3.5E-06 48.1 3.1 33 3-37 90-123 (299)
361 TIGR03771 anch_rpt_ABC anchore 91.5 0.13 2.8E-06 46.9 2.5 24 3-26 7-31 (223)
362 cd03257 ABC_NikE_OppD_transpor 91.5 0.12 2.6E-06 46.7 2.3 23 4-26 33-56 (228)
363 PRK03695 vitamin B12-transport 91.5 0.12 2.7E-06 47.9 2.3 23 3-25 23-46 (248)
364 PRK14249 phosphate ABC transpo 91.5 0.13 2.7E-06 47.7 2.4 23 4-26 32-55 (251)
365 PRK13539 cytochrome c biogenes 91.5 0.13 2.8E-06 46.3 2.4 24 3-26 29-53 (207)
366 PRK13900 type IV secretion sys 91.4 0.13 2.7E-06 50.4 2.5 32 2-33 160-193 (332)
367 TIGR01184 ntrCD nitrate transp 91.4 0.13 2.8E-06 47.1 2.4 23 4-26 13-36 (230)
368 TIGR02788 VirB11 P-type DNA tr 91.4 0.13 2.9E-06 49.5 2.5 32 2-33 144-177 (308)
369 PF01745 IPT: Isopentenyl tran 91.4 0.15 3.3E-06 47.2 2.8 36 3-41 2-38 (233)
370 cd01123 Rad51_DMC1_radA Rad51_ 91.3 0.21 4.6E-06 45.3 3.7 36 2-37 19-63 (235)
371 PF07728 AAA_5: AAA domain (dy 91.3 0.14 2.9E-06 42.8 2.2 32 5-37 2-34 (139)
372 TIGR01189 ccmA heme ABC export 91.3 0.14 3E-06 45.6 2.4 24 3-26 27-51 (198)
373 KOG0745 Putative ATP-dependent 91.3 0.66 1.4E-05 47.2 7.3 100 5-104 229-361 (564)
374 cd03297 ABC_ModC_molybdenum_tr 91.3 0.13 2.9E-06 46.2 2.3 24 3-26 24-48 (214)
375 TIGR01277 thiQ thiamine ABC tr 91.3 0.14 3E-06 46.2 2.4 24 3-26 25-49 (213)
376 PRK09354 recA recombinase A; P 91.3 0.26 5.6E-06 48.7 4.5 38 2-40 60-99 (349)
377 COG2805 PilT Tfp pilus assembl 91.3 0.15 3.2E-06 49.6 2.7 21 3-25 126-146 (353)
378 cd03252 ABCC_Hemolysin The ABC 91.3 0.14 3E-06 46.8 2.5 23 4-26 30-53 (237)
379 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.3 0.14 3E-06 46.8 2.5 23 4-26 31-54 (238)
380 cd03223 ABCD_peroxisomal_ALDP 91.3 0.14 3.1E-06 44.5 2.4 23 4-26 29-52 (166)
381 PRK10744 pstB phosphate transp 91.3 0.1 2.2E-06 48.7 1.5 22 4-25 41-63 (260)
382 cd03246 ABCC_Protease_Secretio 91.3 0.12 2.6E-06 45.1 2.0 24 4-27 30-54 (173)
383 cd01124 KaiC KaiC is a circadi 91.3 0.17 3.6E-06 44.0 2.8 34 4-37 1-37 (187)
384 cd03218 ABC_YhbG The ABC trans 91.3 0.14 3E-06 46.6 2.4 23 4-26 28-51 (232)
385 cd03251 ABCC_MsbA MsbA is an e 91.3 0.14 3.1E-06 46.6 2.5 23 4-26 30-53 (234)
386 COG4555 NatA ABC-type Na+ tran 91.2 0.52 1.1E-05 43.6 6.0 38 3-40 29-68 (245)
387 TIGR01288 nodI ATP-binding ABC 91.2 0.18 3.9E-06 48.3 3.2 23 4-26 32-55 (303)
388 PTZ00035 Rad51 protein; Provis 91.2 0.54 1.2E-05 46.1 6.6 39 2-40 118-165 (337)
389 PRK11248 tauB taurine transpor 91.2 0.14 3E-06 47.8 2.4 24 3-26 28-52 (255)
390 TIGR02770 nickel_nikD nickel i 91.2 0.14 3E-06 46.8 2.3 25 3-27 13-38 (230)
391 PRK14242 phosphate transporter 91.2 0.12 2.5E-06 47.9 1.8 22 4-25 34-56 (253)
392 cd03214 ABC_Iron-Siderophores_ 91.2 0.15 3.3E-06 44.8 2.5 24 3-26 26-50 (180)
393 PRK13648 cbiO cobalt transport 91.2 0.14 3.1E-06 47.9 2.5 23 4-26 37-60 (269)
394 TIGR03005 ectoine_ehuA ectoine 91.2 0.14 3.1E-06 47.3 2.4 23 4-26 28-51 (252)
395 PRK10908 cell division protein 91.1 0.15 3.3E-06 46.2 2.5 24 3-26 29-53 (222)
396 PF10662 PduV-EutP: Ethanolami 91.1 0.14 3E-06 44.3 2.2 24 1-28 1-24 (143)
397 PRK14262 phosphate ABC transpo 91.1 0.14 3E-06 47.3 2.3 23 4-26 31-54 (250)
398 cd03254 ABCC_Glucan_exporter_l 91.1 0.15 3.2E-06 46.3 2.5 24 4-27 31-55 (229)
399 PRK11124 artP arginine transpo 91.1 0.15 3.3E-06 46.8 2.5 23 4-26 30-53 (242)
400 PRK13540 cytochrome c biogenes 91.1 0.16 3.4E-06 45.4 2.5 23 4-26 29-52 (200)
401 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.1 0.097 2.1E-06 44.6 1.1 24 3-26 27-51 (144)
402 cd03233 ABC_PDR_domain1 The pl 91.1 0.16 3.6E-06 45.5 2.7 23 4-26 35-58 (202)
403 TIGR00972 3a0107s01c2 phosphat 91.1 0.11 2.3E-06 48.0 1.5 24 3-26 28-52 (247)
404 cd03245 ABCC_bacteriocin_expor 91.1 0.12 2.5E-06 46.7 1.7 23 4-26 32-55 (220)
405 CHL00072 chlL photochlorophyll 91.0 0.17 3.8E-06 48.4 3.0 35 1-37 1-38 (290)
406 PRK13640 cbiO cobalt transport 91.0 0.15 3.2E-06 48.3 2.4 24 4-27 35-59 (282)
407 cd03237 ABC_RNaseL_inhibitor_d 91.0 0.11 2.4E-06 48.4 1.6 24 3-26 26-50 (246)
408 TIGR02324 CP_lyasePhnL phospho 91.0 0.15 3.3E-06 46.2 2.4 23 4-26 36-59 (224)
409 PRK14241 phosphate transporter 91.0 0.11 2.4E-06 48.3 1.6 24 3-26 31-55 (258)
410 TIGR01193 bacteriocin_ABC ABC- 91.0 0.22 4.9E-06 53.1 4.1 23 4-26 502-525 (708)
411 PRK10771 thiQ thiamine transpo 91.0 0.15 3.2E-06 46.6 2.3 23 4-26 27-50 (232)
412 cd03231 ABC_CcmA_heme_exporter 91.0 0.25 5.5E-06 44.2 3.8 24 3-26 27-51 (201)
413 PRK10895 lipopolysaccharide AB 91.0 0.15 3.3E-06 46.7 2.4 24 3-26 30-54 (241)
414 PRK10247 putative ABC transpor 91.0 0.16 3.5E-06 46.3 2.5 22 4-25 35-57 (225)
415 PRK06731 flhF flagellar biosyn 91.0 0.3 6.4E-06 46.6 4.4 37 3-39 76-115 (270)
416 cd03228 ABCC_MRP_Like The MRP 90.9 0.17 3.7E-06 44.1 2.6 24 4-27 30-54 (171)
417 PRK14251 phosphate ABC transpo 90.9 0.12 2.6E-06 47.7 1.7 23 4-26 32-55 (251)
418 PRK14269 phosphate ABC transpo 90.9 0.12 2.6E-06 47.7 1.6 22 4-25 30-52 (246)
419 PRK10646 ADP-binding protein; 90.9 0.24 5.1E-06 43.4 3.3 23 4-26 30-53 (153)
420 cd03112 CobW_like The function 90.9 0.22 4.7E-06 43.2 3.1 34 3-36 1-35 (158)
421 PRK13638 cbiO cobalt transport 90.9 0.15 3.2E-06 47.9 2.2 23 4-26 29-52 (271)
422 cd03253 ABCC_ATM1_transporter 90.9 0.17 3.6E-06 46.2 2.5 23 4-26 29-52 (236)
423 TIGR02525 plasmid_TraJ plasmid 90.8 0.2 4.3E-06 49.9 3.2 24 3-26 150-174 (372)
424 PRK14238 phosphate transporter 90.8 0.18 3.9E-06 47.5 2.8 23 4-26 52-75 (271)
425 KOG0780 Signal recognition par 90.8 0.25 5.4E-06 49.5 3.8 38 3-40 102-142 (483)
426 PRK13541 cytochrome c biogenes 90.8 0.17 3.7E-06 45.0 2.5 23 4-26 28-51 (195)
427 PRK09493 glnQ glutamine ABC tr 90.8 0.17 3.6E-06 46.5 2.5 24 3-26 28-52 (240)
428 PRK09361 radB DNA repair and r 90.8 0.24 5.1E-06 45.0 3.5 37 2-38 23-62 (225)
429 PRK14274 phosphate ABC transpo 90.8 0.14 2.9E-06 47.7 1.9 23 4-26 40-63 (259)
430 COG1131 CcmA ABC-type multidru 90.8 0.27 5.8E-06 47.2 4.0 26 3-28 32-58 (293)
431 PRK11247 ssuB aliphatic sulfon 90.8 0.17 3.6E-06 47.5 2.5 23 4-26 40-63 (257)
432 TIGR03420 DnaA_homol_Hda DnaA 90.8 0.17 3.7E-06 45.5 2.5 25 3-27 39-64 (226)
433 PRK15056 manganese/iron transp 90.8 0.16 3.5E-06 47.7 2.4 23 4-26 35-58 (272)
434 cd03250 ABCC_MRP_domain1 Domai 90.8 0.18 3.9E-06 45.1 2.6 24 4-27 33-57 (204)
435 cd03294 ABC_Pro_Gly_Bertaine T 90.8 0.17 3.6E-06 47.6 2.5 24 3-26 51-75 (269)
436 COG1132 MdlB ABC-type multidru 90.7 0.17 3.7E-06 52.5 2.8 30 4-33 357-388 (567)
437 TIGR01526 nadR_NMN_Atrans nico 90.7 0.14 3.1E-06 49.8 2.1 24 3-26 163-187 (325)
438 cd03248 ABCC_TAP TAP, the Tran 90.7 0.18 4E-06 45.7 2.6 23 4-26 42-65 (226)
439 PRK13234 nifH nitrogenase redu 90.7 0.21 4.5E-06 47.8 3.1 37 3-39 5-44 (295)
440 cd03247 ABCC_cytochrome_bd The 90.7 0.18 4E-06 44.1 2.5 23 4-26 30-53 (178)
441 TIGR01281 DPOR_bchL light-inde 90.7 0.2 4.3E-06 46.7 2.9 34 4-37 2-38 (268)
442 COG1135 AbcC ABC-type metal io 90.7 0.28 6E-06 47.8 3.9 40 4-43 34-75 (339)
443 PRK11614 livF leucine/isoleuci 90.7 0.15 3.3E-06 46.6 2.1 23 4-26 33-56 (237)
444 PRK15093 antimicrobial peptide 90.7 0.12 2.6E-06 50.2 1.5 23 4-26 35-58 (330)
445 PRK10790 putative multidrug tr 90.7 0.17 3.6E-06 52.8 2.6 37 4-40 369-407 (592)
446 PF03266 NTPase_1: NTPase; In 90.7 0.1 2.2E-06 46.1 0.9 24 5-28 2-26 (168)
447 PRK13645 cbiO cobalt transport 90.6 0.17 3.6E-06 48.1 2.4 24 4-27 39-63 (289)
448 cd03283 ABC_MutS-like MutS-lik 90.6 0.16 3.5E-06 45.9 2.2 20 3-22 26-46 (199)
449 COG2274 SunT ABC-type bacterio 90.6 0.3 6.5E-06 52.6 4.5 36 4-40 501-537 (709)
450 PRK13548 hmuV hemin importer A 90.6 0.16 3.6E-06 47.3 2.3 23 4-26 30-53 (258)
451 COG0802 Predicted ATPase or ki 90.6 0.28 6.1E-06 42.8 3.6 23 4-26 27-50 (149)
452 PRK13649 cbiO cobalt transport 90.6 0.17 3.6E-06 47.7 2.3 23 4-26 35-58 (280)
453 PRK14256 phosphate ABC transpo 90.6 0.14 2.9E-06 47.5 1.7 22 4-25 32-54 (252)
454 TIGR02533 type_II_gspE general 90.6 0.19 4.1E-06 51.8 2.9 34 4-37 244-278 (486)
455 TIGR01420 pilT_fam pilus retra 90.6 0.22 4.9E-06 48.7 3.3 24 3-26 123-147 (343)
456 cd01918 HprK_C HprK/P, the bif 90.6 0.2 4.3E-06 43.7 2.6 31 4-38 16-46 (149)
457 PRK14235 phosphate transporter 90.5 0.15 3.2E-06 47.9 1.9 23 4-26 47-70 (267)
458 PRK09544 znuC high-affinity zi 90.5 0.18 4E-06 47.0 2.5 23 4-26 32-55 (251)
459 PRK14248 phosphate ABC transpo 90.5 0.14 3.1E-06 47.9 1.8 22 4-25 49-71 (268)
460 PRK14253 phosphate ABC transpo 90.5 0.15 3.2E-06 47.0 1.9 23 4-26 31-54 (249)
461 COG1117 PstB ABC-type phosphat 90.5 0.16 3.5E-06 47.2 2.0 16 2-17 33-48 (253)
462 PLN03187 meiotic recombination 90.5 0.63 1.4E-05 45.9 6.4 42 2-43 126-176 (344)
463 KOG4235 Mitochondrial thymidin 90.5 0.14 3.1E-06 46.8 1.6 44 96-139 132-175 (244)
464 cd03215 ABC_Carb_Monos_II This 90.5 0.13 2.9E-06 45.2 1.5 23 4-26 28-51 (182)
465 PRK13651 cobalt transporter AT 90.4 0.19 4.2E-06 48.4 2.6 23 4-26 35-58 (305)
466 cd03216 ABC_Carb_Monos_I This 90.4 0.2 4.3E-06 43.5 2.5 23 4-26 28-51 (163)
467 TIGR02323 CP_lyasePhnK phospho 90.4 0.18 4E-06 46.6 2.4 24 3-26 30-54 (253)
468 PRK14268 phosphate ABC transpo 90.4 0.13 2.9E-06 47.8 1.4 22 4-25 40-62 (258)
469 PRK14273 phosphate ABC transpo 90.3 0.14 3E-06 47.4 1.6 23 4-26 35-58 (254)
470 PRK13632 cbiO cobalt transport 90.3 0.19 4.1E-06 47.2 2.5 23 4-26 37-60 (271)
471 PRK13230 nitrogenase reductase 90.3 0.22 4.8E-06 46.9 2.9 37 1-38 1-40 (279)
472 PRK14270 phosphate ABC transpo 90.3 0.15 3.3E-06 47.1 1.7 22 4-25 32-54 (251)
473 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.3 0.19 4.1E-06 45.9 2.4 24 3-26 49-73 (224)
474 PRK11153 metN DL-methionine tr 90.3 0.19 4.1E-06 49.2 2.4 24 4-27 33-57 (343)
475 PRK13635 cbiO cobalt transport 90.3 0.19 4E-06 47.6 2.4 24 4-27 35-59 (279)
476 TIGR03522 GldA_ABC_ATP gliding 90.3 0.28 6E-06 47.0 3.5 24 4-27 30-54 (301)
477 cd03267 ABC_NatA_like Similar 90.3 0.19 4.2E-06 46.1 2.4 24 3-26 48-72 (236)
478 PRK11831 putative ABC transpor 90.2 0.14 3.1E-06 48.0 1.5 23 4-26 35-58 (269)
479 PRK14244 phosphate ABC transpo 90.2 0.16 3.5E-06 46.9 1.8 22 4-25 33-55 (251)
480 PRK14261 phosphate ABC transpo 90.2 0.14 3E-06 47.4 1.4 22 4-25 34-56 (253)
481 PF00005 ABC_tran: ABC transpo 90.2 0.15 3.2E-06 42.2 1.4 23 3-25 12-35 (137)
482 PRK13547 hmuV hemin importer A 90.2 0.18 3.9E-06 47.7 2.2 24 3-26 28-52 (272)
483 PRK13657 cyclic beta-1,2-gluca 90.2 0.2 4.3E-06 52.3 2.7 32 4-35 363-396 (588)
484 TIGR03375 type_I_sec_LssB type 90.2 0.32 6.8E-06 51.9 4.3 23 4-26 493-516 (694)
485 TIGR02016 BchX chlorophyllide 90.2 0.21 4.5E-06 48.0 2.6 35 3-37 1-38 (296)
486 TIGR02769 nickel_nikE nickel i 90.2 0.19 4.2E-06 47.0 2.4 23 4-26 39-62 (265)
487 CHL00175 minD septum-site dete 90.2 0.27 5.9E-06 46.2 3.4 38 1-38 14-55 (281)
488 PRK13543 cytochrome c biogenes 90.2 0.2 4.3E-06 45.3 2.4 23 4-26 39-62 (214)
489 PRK13231 nitrogenase reductase 90.1 0.22 4.8E-06 46.4 2.7 35 3-37 3-39 (264)
490 COG1116 TauB ABC-type nitrate/ 90.1 0.2 4.3E-06 47.2 2.3 35 4-38 31-67 (248)
491 PRK14237 phosphate transporter 90.1 0.16 3.5E-06 47.6 1.8 23 4-26 48-71 (267)
492 cd03244 ABCC_MRP_domain2 Domai 90.1 0.21 4.6E-06 45.0 2.5 23 4-26 32-55 (221)
493 PRK14236 phosphate transporter 90.1 0.21 4.4E-06 47.0 2.5 23 4-26 53-76 (272)
494 TIGR00968 3a0106s01 sulfate AB 90.1 0.21 4.6E-06 45.9 2.5 23 4-26 28-51 (237)
495 COG1125 OpuBA ABC-type proline 90.1 0.27 5.8E-06 46.9 3.2 133 4-136 29-206 (309)
496 PRK13647 cbiO cobalt transport 90.1 0.2 4.4E-06 47.2 2.4 23 4-26 33-56 (274)
497 PRK10619 histidine/lysine/argi 90.1 0.21 4.5E-06 46.4 2.5 24 3-26 32-56 (257)
498 TIGR00958 3a01208 Conjugate Tr 90.0 0.21 4.5E-06 53.6 2.7 23 4-26 509-532 (711)
499 PRK13650 cbiO cobalt transport 90.0 0.21 4.6E-06 47.2 2.5 23 4-26 35-58 (279)
500 PRK13637 cbiO cobalt transport 90.0 0.2 4.3E-06 47.7 2.3 24 4-27 35-59 (287)
No 1
>PLN02348 phosphoribulokinase
Probab=100.00 E-value=3.5e-102 Score=758.68 Aligned_cols=327 Identities=83% Similarity=1.290 Sum_probs=314.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc-----------------CCeEEEEccceecCCchhhhhhccCCCCccccchhH
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS-----------------DTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDL 63 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~-----------------~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~ 63 (329)
+.||||+|++|||||| ++.|++.|+. +.+++||+||||+++++++++.+.++++|+++|+|+
T Consensus 49 p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a~dfDl 128 (395)
T PLN02348 49 TVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDL 128 (395)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCcccccHHH
Confidence 4699999999999999 9999999963 468999999999999998888899999999999999
Q ss_pred HHHHHHHHhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhccccccc
Q 048274 64 MYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTER 143 (329)
Q Consensus 64 L~~~L~~L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eR 143 (329)
|.++|.+|++|+++.+|+|||.+|++++++.++|.+||||||+|+++++.+++++|++||||++++++++||++||+++|
T Consensus 129 l~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD~~eR 208 (395)
T PLN02348 129 MYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRDMAER 208 (395)
T ss_pred HHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHHHhhHhhc
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhHHHHHhhcccchhhhccccCCCCcEEEecCCCCCCCCCCCCceEEEEEEEecCCCCCCccccccCCCccccccc
Q 048274 144 GHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPC 223 (329)
Q Consensus 144 G~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~~~~p~~~~~~~l~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~ 223 (329)
|+|.|+|.++|++|+|+|.+||.||+.+||+||+.+|++++|.++++++|||||+||+++++|||+||||+||+|+|+||
T Consensus 209 G~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~p~~l~~~~~~~~~l~vrli~~~~~~~~~~~~l~d~~~~~~~~~~ 288 (395)
T PLN02348 209 GHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKNFDPVYLFDEGSTISWIPC 288 (395)
T ss_pred CCCHHHHHHHHHhcCcchhhhcccccccCCEEEEecCCcCCCCCCCCceEEEEEEecCCCCCCCcceeeccCCccccccc
Confidence 99999999999999999999999999999999999999999977888999999999999999999999999999999999
Q ss_pred CCcccccCCCeeEEecCCccCCceeeEEEEcCCCCChhHHHHHHHhhccccccchhhHHHHHHhccCCCCCCChhHHHHH
Q 048274 224 GRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 303 (329)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~dg~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 303 (329)
|++|+||||||+|.|++|+|||++|+||||||+|++||||||||+||+||||||||||||||+||+++|||+|||||||+
T Consensus 289 ~~~~~~~~~~~~~~~~~d~~~g~~v~~l~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (395)
T PLN02348 289 GRKLTCSYPGIKFFYGPDTYFGHEVSVLEMDGQFDKLDELIYVESHLSNTSTKFYGEVTQQMLKHADFPGSNNGTGLFQT 368 (395)
T ss_pred cccccCCCCCeEEEeeccccCCeeeeEEEecCcccchhHHHHHHHHhccCCcchhHHHHHHHHhcCCCCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCcccc
Q 048274 304 IVGLKIRDLYEQIITSKAAAPVEAK 328 (329)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (329)
|+|||||++||++|++.+++++.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (395)
T PLN02348 369 IVGLKIRDLYERIVAKRKVAAGEAT 393 (395)
T ss_pred HHHHHHHHHHHHHhccccccccccc
Confidence 9999999999999998776666554
No 2
>PRK07429 phosphoribulokinase; Provisional
Probab=100.00 E-value=8.7e-80 Score=594.20 Aligned_cols=313 Identities=58% Similarity=0.993 Sum_probs=298.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
+.+|||+|++|||||| ++.+++.|+...+.+||+||||.+++.+++..+.++++|+++|++++.+++..+++|+.+.+|
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~~P 87 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPILKP 87 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCceecc
Confidence 4599999999999999 888998888778899999999987777777778889999999999999999999999999999
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhcccc
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPD 160 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd 160 (329)
.||+.++++.+++.+.|.++||+||+|+++++.+++++|++|||+++.+++++||++||+++||++.|++.++|++|+|+
T Consensus 88 ~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd 167 (327)
T PRK07429 88 IYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPD 167 (327)
T ss_pred eeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCcc
Confidence 99999999998888889999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCcEEEecCCCCCCCCCCCCceEEEEEEEecCCCCCCccccccCCCcccccccCCcccccCCCeeEEecC
Q 048274 161 FDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGP 240 (329)
Q Consensus 161 ~~~yI~Pqk~~ADiVI~~~p~~~~p~~~~~~~l~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (329)
+.+||+||+++||+||+++|++++|.+.+.++|||||+||+++++||++||||+| +|+||+||++|.|++
T Consensus 168 ~~~yI~P~k~~ADiVI~~~p~~~~~~~~~~~~l~v~li~~~~~~~~~~~~~~d~~----------~~~~~~~~~~~~~~~ 237 (327)
T PRK07429 168 FEAYIRPQRQWADVVIQFLPTQLIDNDEENKVLRVRLVLRPGIPHPDPAYLFDEG----------KLTCSYPGIALRYGP 237 (327)
T ss_pred HhhhhcccccCCCEEEEcCCCcCCCCCCCCcEEEEEEEecCCCCCCCcceeeccc----------cccCCCCCceEEEec
Confidence 9999999999999999999999998777789999999999999999999999997 999999999999999
Q ss_pred CccCCceeeEEEEcC-----CCCChhHHHHHHHhhccccccchhhHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 048274 241 DAYFGHEVSILEMDG-----KFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ 315 (329)
Q Consensus 241 ~~~~g~~~~~l~~dg-----~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 315 (329)
|+|||++|+||+||| .|++|||+||+|+||+|+++|||||+|++|+++.++|||+|||||+|+|+++|||++||+
T Consensus 238 ~~~~~~~~~~l~~dg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 317 (327)
T PRK07429 238 DRYMGKPVDVLEVDGHATLEQFDNLEEMIYIEPHLSNTSTKYYGELTGLLLGHTDYPGSSNGLALFQLLIGYKMRAAYER 317 (327)
T ss_pred CccCCcEeeEEEEcCCCcHHHHHHHHHHHHhhhcccccCccccccHHHHHhccCCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccC
Q 048274 316 IITSKAAAP 324 (329)
Q Consensus 316 ~~~~~~~~~ 324 (329)
++++.++++
T Consensus 318 ~~~~~~~~~ 326 (327)
T PRK07429 318 LTAKEAKLA 326 (327)
T ss_pred HhcccccCC
Confidence 998776654
No 3
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=100.00 E-value=1.6e-65 Score=484.24 Aligned_cols=272 Identities=78% Similarity=1.254 Sum_probs=261.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
||||+|++|||||| ++.+++.|...++.+|++|+||++++.+++..+++.++|++++++.+.+++..+++|+.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 68999999999999 88888888877899999999999888777777888999999999999999999999999999999
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhcccchh
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFD 162 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~ 162 (329)
||.++++.+++.+++.++||+||+|+++++.+++++|++|||+++++++++||++||+++||+|.|+++++|.+|+|++.
T Consensus 81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~ 160 (273)
T cd02026 81 NHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPDFE 160 (273)
T ss_pred cccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchhHH
Confidence 99999988888888899999999999998899999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCcEEEecCCCCCCCCCCCCceEEEEEEEecCCCCCCccccccCCCcccccccCCcccccCCCeeEEecCCc
Q 048274 163 AYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDA 242 (329)
Q Consensus 163 ~yI~Pqk~~ADiVI~~~p~~~~p~~~~~~~l~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (329)
+||+||+.+||+||+++|++++|.+.+.+++||||+|+.+.+.|+++||+|+||+++|+|||++++|++||++|+|++|.
T Consensus 161 ~~I~P~~~~ADvVI~~~p~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (273)
T cd02026 161 AYIDPQKQYADVVIQVLPTQLIPDDTEGKVLRVRLIQKEGVKDFVPVYLFDEGSTISWIPCGRKLTCSYPGIKLAYGPDT 240 (273)
T ss_pred HHhccccccCcEEEEccCccCCcccccceEEEEEEEecCCCCCcCcccccCCCCccccccCccccccCCCceEEEEeCCc
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEEcCCCCChhHHHHHHHhhccccc
Q 048274 243 YFGHEVSILEMDGKFDRLDELIYVESHLSNLST 275 (329)
Q Consensus 243 ~~g~~~~~l~~dg~~~~~~e~~~~e~~~~~~~~ 275 (329)
|||++|+|++|||.|+++||++|+|+||+|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (273)
T cd02026 241 YYGREVSVLEMDGQFDNLEELIYVESHLSNTST 273 (273)
T ss_pred ccCccceeeeeecchhhHHHHHhhhhccccCCC
Confidence 999999999999999999999999999999875
No 4
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=100.00 E-value=5.2e-56 Score=415.11 Aligned_cols=225 Identities=26% Similarity=0.339 Sum_probs=201.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhh---------hccCCCCccccchhHHHHHHHHH
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKE---------KGVTALDPRANNFDLMYEQVKAM 71 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~---------~~~~~~~Pea~d~d~L~~~L~~L 71 (329)
||||+|+||||||| ++.+++.|... .+++|++|+||+++|.++++ .+++||+|+|||+++|+++|++|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 69999999999999 88899988754 58999999999998876542 25678889999999999999999
Q ss_pred hcCCceecccccc----------ccCCCCCCccc-CCCcEEEEEccccccc---hhhhccCCEEEEEECCHHHHHHHhhc
Q 048274 72 KDGVSVEKPIYNH----------VTGLLDPPELI-KPPKILVIEGLHPMYD---ARVRELLDFSIYLDISNEVKFAWKIQ 137 (329)
Q Consensus 72 ~~G~~i~~P~Yd~----------~tg~~~~~~~i-~p~~vlIvEGl~~l~~---~~lr~~~D~~IyVD~~~evrl~rkI~ 137 (329)
++|++++.|+||| .+|+|++|+.+ .|++||||||+|+++. +.+++++|++||||++.++++.|||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI~ 160 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIH 160 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHHH
Confidence 9999999999988 56889999874 6999999999997663 78999999999999999999999999
Q ss_pred ccccccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecCCC---------CCCCCCCCCc-eEEEEEEEecCCCCCC
Q 048274 138 RDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPT---------QLIPDDNEGK-VLRVRLIMKEGVKYFS 207 (329)
Q Consensus 138 RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~---------~~~p~~~~~~-~l~~r~~~~~~~~~~~ 207 (329)
||+++||||.|+|+++|.++||||.+||+||+++||||||++|+ ++||+++||+ |||+| +++++|
T Consensus 161 RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr~p~vdts~pf~~~~~p~~~es~~vi~~~-----~~~~~d 235 (277)
T cd02029 161 RDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQRVPTVDTSNPFIARDIPTADESFVVIHFR-----KPWGID 235 (277)
T ss_pred hhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEeccCcccCCCcccccCCCCCCcceEEEEec-----CCCCCC
Confidence 99999999999999999999999999999999999999999999 8999999998 56666 788999
Q ss_pred cccccc--CCCcccccccCCcccccCCCeeEEe
Q 048274 208 PVYLFD--EGSTIEWIPCGRKLTCSYPGIKFSY 238 (329)
Q Consensus 208 ~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (329)
|+||+. .||.++ |..|..-||-||.+
T Consensus 236 ~~~~~~~~~~~~~s-----~~~~~v~~g~~~~~ 263 (277)
T cd02029 236 FPYLLNMLHDSFMS-----RPNTIVVPGGKMGL 263 (277)
T ss_pred HHHHHHhhccchhc-----CCCcEEecCchHHH
Confidence 999977 677776 77777777777643
No 5
>PRK15453 phosphoribulokinase; Provisional
Probab=100.00 E-value=6.7e-54 Score=403.60 Aligned_cols=224 Identities=27% Similarity=0.358 Sum_probs=198.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhh---------hccCCCCccccchhHHHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKE---------KGVTALDPRANNFDLMYEQVKA 70 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~---------~~~~~~~Pea~d~d~L~~~L~~ 70 (329)
.+|||+|+||||||| ++.+++.|... ++++||+|+||+++|.++++ .+++||+|+|||+++|+++|++
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l~~ 85 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLFRE 85 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHHHH
Confidence 589999999999999 88899988754 58999999999998876533 2677888999999999999999
Q ss_pred HhcCCceeccccc----------cccCCCCCCcccC-CCcEEEEEccccccc---hhhhccCCEEEEEECCHHHHHHHhh
Q 048274 71 MKDGVSVEKPIYN----------HVTGLLDPPELIK-PPKILVIEGLHPMYD---ARVRELLDFSIYLDISNEVKFAWKI 136 (329)
Q Consensus 71 L~~G~~i~~P~Yd----------~~tg~~~~~~~i~-p~~vlIvEGl~~l~~---~~lr~~~D~~IyVD~~~evrl~rkI 136 (329)
|++|+.++.|.|+ +.+|+|++|+.+. |++||||||+|+++. ..+++++|++|||+++.++++.|||
T Consensus 86 l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~irRI 165 (290)
T PRK15453 86 YGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQKI 165 (290)
T ss_pred HhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHHHH
Confidence 9998877776654 4678899999886 799999999999953 5789999999999999999999999
Q ss_pred cccccccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecCCC---------CCCCCCCCCc-eEEEEEEEecCCCCC
Q 048274 137 QRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPT---------QLIPDDNEGK-VLRVRLIMKEGVKYF 206 (329)
Q Consensus 137 ~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~---------~~~p~~~~~~-~l~~r~~~~~~~~~~ 206 (329)
+||+++||||.|+|+++|.+|||||.+||+||+++||||||++|+ ++||+++||+ |||+| +++++
T Consensus 166 ~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfqrvp~vdts~pf~~~~ip~~~es~~vi~~~-----~~~~~ 240 (290)
T PRK15453 166 HRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQRVPTVDTSNPFIARDIPTPDESFVVIRFR-----NPKGI 240 (290)
T ss_pred HhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEEeCCccCCCCcccccCCCCCCcceEEEEec-----CCCCC
Confidence 999999999999999999999999999999999999999999999 8999999999 57777 89999
Q ss_pred Ccccccc--CCCcccccccCCcccccCCCeeE
Q 048274 207 SPVYLFD--EGSTIEWIPCGRKLTCSYPGIKF 236 (329)
Q Consensus 207 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
||+||+. .||.++ |..|..-||-||
T Consensus 241 d~~yl~~~~~~~~~s-----~~~~~v~~g~~~ 267 (290)
T PRK15453 241 DFPYLLSMIQGSFMS-----RANTIVVPGGKM 267 (290)
T ss_pred CHHHHHHHhccchhc-----CCCcEEecCchH
Confidence 9999977 677766 666666666665
No 6
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.9e-44 Score=325.86 Aligned_cols=183 Identities=28% Similarity=0.511 Sum_probs=169.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhh--hhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRK--EKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~--~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
+||||+|+||||||| |+.++..|+...+++||+||||+..+.... +...++++|+|||+|+|.++|..|++|+++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~ 88 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDL 88 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcccc
Confidence 699999999999999 999999999779999999999996443332 34788999999999999999999999999999
Q ss_pred cccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hc
Q 048274 80 PIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-AR 157 (329)
Q Consensus 80 P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r 157 (329)
|.||+.+|++. +...+.|.+||||||+|+++++++++++|++||||++.++|+.||+.||+.+||++.|+++++|. .+
T Consensus 89 P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~v 168 (218)
T COG0572 89 PVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTV 168 (218)
T ss_pred cccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 99999999987 56788899999999999999999999999999999999999999999999999999999999998 89
Q ss_pred ccchhhhccccCCCCcEEEecCCCCCCC
Q 048274 158 KPDFDAYIDPQKQYADAVIEVLPTQLIP 185 (329)
Q Consensus 158 ~pd~~~yI~Pqk~~ADiVI~~~p~~~~p 185 (329)
+|+|++||+|++++||++|+..+.+.+.
T Consensus 169 kp~~~~fIeptk~~ADiiip~~~~n~va 196 (218)
T COG0572 169 RPMYEQFIEPTKKYADIIIPSGGKNEVA 196 (218)
T ss_pred ChhhhhccCcccccceEEeecCCcceee
Confidence 9999999999999999999998876543
No 7
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=100.00 E-value=2.2e-42 Score=307.28 Aligned_cols=221 Identities=26% Similarity=0.371 Sum_probs=189.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhh---------ccCCCCccccchhHHHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEK---------GVTALDPRANNFDLMYEQVKA 70 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~---------~~~~~~Pea~d~d~L~~~L~~ 70 (329)
.||+|+|.||+|.|| ..++-+++... .++-|++|+|||++|++|+.+ .+++|+|+|||+..|++.+.+
T Consensus 6 PiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~e 85 (289)
T COG3954 6 PVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIE 85 (289)
T ss_pred ceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHHH
Confidence 489999999999998 55555666543 688999999999998876532 688999999999999999999
Q ss_pred Hhc---CCc-------eeccccccccCCCCCCcccC-CCcEEEEEccccccchhhhccCCEEEEEEC----CHHHHHHH-
Q 048274 71 MKD---GVS-------VEKPIYNHVTGLLDPPELIK-PPKILVIEGLHPMYDARVRELLDFSIYLDI----SNEVKFAW- 134 (329)
Q Consensus 71 L~~---G~~-------i~~P~Yd~~tg~~~~~~~i~-p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~----~~evrl~r- 134 (329)
+.+ |+. .++-.||..+|+|++|++++ |+|++++|||||.. +.+..|++.++|. .|.++++|
T Consensus 86 Yg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~lpe~sDvLFYEGLHGgv---Vt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 86 YGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGV---VTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred hcccCCcchhhhhhchhhcCccCCCCCCCCCcccCCCccceeeeeccccce---ecCcccHhhhhceeeeeeeEeeHHHH
Confidence 987 332 45667999999999999997 69999999999987 6666676666665 78899999
Q ss_pred -hhcccccccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecCCC---------CCCCCCCCCc-eEEEEEEEecCC
Q 048274 135 -KIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPT---------QLIPDDNEGK-VLRVRLIMKEGV 203 (329)
Q Consensus 135 -kI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~---------~~~p~~~~~~-~l~~r~~~~~~~ 203 (329)
|+.||..+||||.|+|++.+.++||||.+||+||++++||++|++|+ ++||+.+||. |||+| ++
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINFQRVPtVDTSNPf~Ak~IPtldESfvVI~Fr-----~~ 237 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQRVPTVDTSNPFAAKGIPSLDESFVVIHFR-----NL 237 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCccccccccceeecccccCCCchhhccCCCccceEEEEEec-----CC
Confidence 99999999999999999999999999999999999999999999999 7899999997 67777 99
Q ss_pred CCCCcccccc--CCCcccccccCCcccccCCCeeE
Q 048274 204 KYFSPVYLFD--EGSTIEWIPCGRKLTCSYPGIKF 236 (329)
Q Consensus 204 ~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
+++||+||+. .||.++ +..|..-||=|+
T Consensus 238 ~~iDFPYLLaMl~gSf~S-----~~NtiVVPGgKm 267 (289)
T COG3954 238 EGIDFPYLLAMLQGSFIS-----HINTLVVPGGKM 267 (289)
T ss_pred ccCChHHHHHHHhhhHhh-----cCceEEecCchh
Confidence 9999999976 677776 555555566555
No 8
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=100.00 E-value=2e-40 Score=297.05 Aligned_cols=181 Identities=36% Similarity=0.600 Sum_probs=157.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC------eEEEEccceecCC----chhhhhhccCCCCccccchhHHHHHHHHHh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT------TTVICLDDYHSLD----RTGRKEKGVTALDPRANNFDLMYEQVKAMK 72 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~------v~vI~~Ddyhr~d----r~~~~~~~~~~~~Pea~d~d~L~~~L~~L~ 72 (329)
||||+|++|||||| |+.|+..|+..+ +.++++|+||... +........++++|+++|+++|.++|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 79999999999999 999999998542 6799999999742 222223457889999999999999999999
Q ss_pred cCCceeccccccccCCCCCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHH
Q 048274 73 DGVSVEKPIYNHVTGLLDPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIK 151 (329)
Q Consensus 73 ~G~~i~~P~Yd~~tg~~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~ 151 (329)
+|+.+..|.|||.++...++ ..+.+.+||||||+|+++++.+++++|++|||+++.+++++||++||+.+||++.|+++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~~ 160 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEVI 160 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHHH
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeEE
Confidence 99999999999999988774 34458999999999999988899999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhhccccCCCCcEEEecCCCCCC
Q 048274 152 ASIEARKPDFDAYIDPQKQYADAVIEVLPTQLI 184 (329)
Q Consensus 152 ~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~~~~ 184 (329)
++|..++|+|.+||.|++++||+||++.|++.|
T Consensus 161 ~~~~~~~~~~~~~I~p~~~~ADivi~~~~~~~~ 193 (194)
T PF00485_consen 161 AQYERVRPGYERYIEPQKERADIVIPSGPTNDI 193 (194)
T ss_dssp HHHHTHHHHHHHCTGGGGGG-SEEEESCTSSHH
T ss_pred EEeecCChhhhhheeccccccEEEECCCCCccc
Confidence 999999999999999999999999999998764
No 9
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=8.7e-38 Score=284.97 Aligned_cols=178 Identities=25% Similarity=0.428 Sum_probs=156.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEccceecCCch-hhhh-hccCCCCccccchhHHHHHHHHHhcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYHSLDRT-GRKE-KGVTALDPRANNFDLMYEQVKAMKDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyhr~dr~-~~~~-~~~~~~~Pea~d~d~L~~~L~~L~~G 74 (329)
..+|||+|+||||||| |+.|++.|. ...+.++++|+||++++. +..+ ...++.+|+++|+++|.++|..|++|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4699999999999999 877777663 234779999999997532 1222 24578899999999999999999999
Q ss_pred CceeccccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHH
Q 048274 75 VSVEKPIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS 153 (329)
Q Consensus 75 ~~i~~P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~ 153 (329)
+++..|.|||.++... ....++|.+||||||+|+++.+.+++++|++|||+++.++++.||++||+.+||++.|+++.+
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~ 162 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQ 162 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHH
Confidence 9999999999988654 345677899999999999988999999999999999999999999999999999999999998
Q ss_pred Hhh-cccchhhhccccCCCCcEEEecC
Q 048274 154 IEA-RKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 154 i~~-r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
|.. +.|.+.+||+|++.+||+||+..
T Consensus 163 ~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 163 YEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHHhhcccHHHHcCccccCCcEEEcCC
Confidence 875 79999999999999999999653
No 10
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=100.00 E-value=1.6e-33 Score=250.46 Aligned_cols=171 Identities=23% Similarity=0.316 Sum_probs=148.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
||+|+|++|||||| |+.++..|.. .++.+|++|+||++...... ..-+++.|.++|+++|.++|..+++|+.+..|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~-~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p 79 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRD-EDGNYDFESILDLDLLNKNLHDLLNGKEVELP 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccc-cCCCCCCCccccHHHHHHHHHHHHCCCeeecc
Confidence 68999999999999 8888888863 37999999999997522222 23356678889999999999999999999999
Q ss_pred ccccccCCCCCC--cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHH-HHHHhhcccccccCCchhhHHHHHhhc
Q 048274 81 IYNHVTGLLDPP--ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEV-KFAWKIQRDMTERGHSLESIKASIEAR 157 (329)
Q Consensus 81 ~Yd~~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~ev-rl~rkI~RD~~eRG~s~E~V~~~i~~r 157 (329)
.||+.++...++ ..+++.+|||+||+|+++ +.+++++|++|||+++.++ ++.||+.||+.+||++.++++.++. +
T Consensus 80 ~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~-~ 157 (179)
T cd02028 80 IYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWP-S 157 (179)
T ss_pred cceeECCccCCCceEEeCCCCEEEEecHHhcC-HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcc-c
Confidence 999999998765 566789999999999997 6899999999999999998 9999999999999999999999964 5
Q ss_pred ccchhhhc-cccCCCCcEEEe
Q 048274 158 KPDFDAYI-DPQKQYADAVIE 177 (329)
Q Consensus 158 ~pd~~~yI-~Pqk~~ADiVI~ 177 (329)
+|+++.++ .|++..||+|++
T Consensus 158 ~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 158 VPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred ccCchhhcCCCchhccceecc
Confidence 67777665 668999999986
No 11
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.97 E-value=3.2e-31 Score=269.73 Aligned_cols=170 Identities=24% Similarity=0.358 Sum_probs=151.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
+.+|||+|++|||||| ++.+++.+. .+.+|++|+||...+ ....++.+|+++|++.+.++|..|++|+++..|
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~~~----~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iP 138 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDSSR----IIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVP 138 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecchh----hhCccCCChhhcchhHHHHHHHHHhCCCceecC
Confidence 4699999999999998 777777763 588999999986432 124567899999999999999999999999999
Q ss_pred ccccccCCCCCC--cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hc
Q 048274 81 IYNHVTGLLDPP--ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-AR 157 (329)
Q Consensus 81 ~Yd~~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r 157 (329)
.||+.++...++ ..+++.+||||||+|+++ +++++++|++||||++.++++.||+.||+.+||++.|+++++|. .+
T Consensus 139 iYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~V 217 (656)
T PLN02318 139 IYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETV 217 (656)
T ss_pred ccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 999999976543 556789999999999997 88999999999999999999999999999999999999999985 79
Q ss_pred ccchhhhccccCCCCcEEEec
Q 048274 158 KPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 158 ~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+|+|.+||+|++++|||+|.+
T Consensus 218 kP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 218 YPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred cchHHHHhCcchhcceEEEec
Confidence 999999999999999999966
No 12
>PRK05439 pantothenate kinase; Provisional
Probab=99.97 E-value=3.1e-30 Score=247.36 Aligned_cols=181 Identities=20% Similarity=0.334 Sum_probs=149.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccceecCCchhhhhhcc--CCCCccccchhHHHHHHHHHhcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDDYHSLDRTGRKEKGV--TALDPRANNFDLMYEQVKAMKDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Ddyhr~dr~~~~~~~~--~~~~Pea~d~d~L~~~L~~L~~G 74 (329)
+.||||+|++|||||| |+.|+..|.. ..+.+|++|+||++. .++.+.+. ....|+++|+++|.+.|..++.|
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~-~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G 164 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN-AVLEERGLMKRKGFPESYDMRALLRFLSDVKSG 164 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH-HHHhhhhccccCCCcccccHHHHHHHHHHHHcC
Confidence 4699999999999999 8888887753 369999999999863 23323232 24469999999999999999999
Q ss_pred Cc-eeccccccccCCCCC--CcccCCCcEEEEEccccccchhh------hccCCEEEEEECCHHHHHHHhhcccccc---
Q 048274 75 VS-VEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDARV------RELLDFSIYLDISNEVKFAWKIQRDMTE--- 142 (329)
Q Consensus 75 ~~-i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~~~l------r~~~D~~IyVD~~~evrl~rkI~RD~~e--- 142 (329)
+. +..|+|||.++++.+ ...+++.+||||||++.++.+.. ++++|++||||++.++..+|+++|+.+.
T Consensus 165 ~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~ 244 (311)
T PRK05439 165 KPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRET 244 (311)
T ss_pred CCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHh
Confidence 87 999999999998753 45667899999999999976655 9999999999999999999999988752
Q ss_pred ------------cCCchhhHHHH----Hh-hcccchhhhccccCCCCcEEEecCCCCC
Q 048274 143 ------------RGHSLESIKAS----IE-ARKPDFDAYIDPQKQYADAVIEVLPTQL 183 (329)
Q Consensus 143 ------------RG~s~E~V~~~----i~-~r~pd~~~yI~Pqk~~ADiVI~~~p~~~ 183 (329)
+|.|.+++.+. |. ..+|++.+||.|++.+||+||...+.+.
T Consensus 245 ~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~ 302 (311)
T PRK05439 245 AFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHS 302 (311)
T ss_pred hhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCc
Confidence 47787776654 43 4789999999999999999999765444
No 13
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.97 E-value=4.2e-30 Score=235.74 Aligned_cols=176 Identities=23% Similarity=0.336 Sum_probs=141.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEccceecCCchhhhhhcc--CCCCccccchhHHHHHHHHHhcC-C
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYHSLDRTGRKEKGV--TALDPRANNFDLMYEQVKAMKDG-V 75 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyhr~dr~~~~~~~~--~~~~Pea~d~d~L~~~L~~L~~G-~ 75 (329)
||||+|++|||||| |+.|++.|. +..+.+|++|+||.+ +..+.+.+. ....|+++|++++.+.|..++.| +
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~-~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~ 79 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP-NKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKK 79 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc-HHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCC
Confidence 68999999999999 889999885 346899999999985 323322221 23468999999999999999994 7
Q ss_pred ceeccccccccCCCCCC--cccCCCcEEEEEccccccchh-----hhccCCEEEEEECCHHHHHHHhhcc---cccccCC
Q 048274 76 SVEKPIYNHVTGLLDPP--ELIKPPKILVIEGLHPMYDAR-----VRELLDFSIYLDISNEVKFAWKIQR---DMTERGH 145 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~-----lr~~~D~~IyVD~~~evrl~rkI~R---D~~eRG~ 145 (329)
.+..|.||+.+++..+. ..+++.+||||||+|+++.+. +++++|++||||++.+++.+|++.| |+++||+
T Consensus 80 ~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 80 NVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred cEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999876543 236788999999999999766 9999999999999999987775554 5556666
Q ss_pred chhhHHHH----------------Hh-hcccchhhhccccCCCCcEEEecCC
Q 048274 146 SLESIKAS----------------IE-ARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 146 s~E~V~~~----------------i~-~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
+.+.++.+ |+ ..+|++.+||.|++++||+||....
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~ 211 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGA 211 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCC
Confidence 66544432 33 4799999999999999999997654
No 14
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.97 E-value=5e-30 Score=231.76 Aligned_cols=178 Identities=26% Similarity=0.447 Sum_probs=154.6
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCch-hhh-hhccCCCCccccchhHHHHHHHHHhcCCcee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRT-GRK-EKGVTALDPRANNFDLMYEQVKAMKDGVSVE 78 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~-~~~-~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~ 78 (329)
..+|+|+|++|||||| ++.|++.|....+.+|++|+||++... ... .....+.+|+++|++.+.+.|..++.|+.+.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v~ 85 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAIE 85 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCccc
Confidence 4599999999999999 888888886557999999999986321 111 1234566899999999999999999999999
Q ss_pred ccccccccCCCCC-CcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhh-
Q 048274 79 KPIYNHVTGLLDP-PELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEA- 156 (329)
Q Consensus 79 ~P~Yd~~tg~~~~-~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~- 156 (329)
.|.||+.++...+ ...+.+.+++|+||+++++.+.+++++|++|||+++.+++++|+++||...||++.+++.++|..
T Consensus 86 ~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~ 165 (209)
T PRK05480 86 IPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLST 165 (209)
T ss_pred cCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHHHh
Confidence 9999999987653 34566789999999999987789999999999999999999999999999999999999999975
Q ss_pred cccchhhhccccCCCCcEEEecC
Q 048274 157 RKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 157 r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
..|.|.+|+.|++++||+||++-
T Consensus 166 ~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 166 VRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred hhhhHHhhccHhhcceeEEecCC
Confidence 46999999999999999999873
No 15
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.96 E-value=1.1e-28 Score=221.08 Aligned_cols=176 Identities=28% Similarity=0.496 Sum_probs=152.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC-Cchhh-hhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL-DRTGR-KEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~-dr~~~-~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
||||+|++|||||| ++.+++.|....+.++++|+||+. ..... ......+..|.+++++.+.+.|..++.|+.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 69999999999999 888888885557999999999974 22222 2224456689999999999999999999999999
Q ss_pred ccccccCCCCC-CcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hcc
Q 048274 81 IYNHVTGLLDP-PELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-ARK 158 (329)
Q Consensus 81 ~Yd~~tg~~~~-~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r~ 158 (329)
.||+.++.... ...+.+.+++|+||.++++.+.+.+.+|++|||+++.+++++|+++||..+||++.+++.+.|. ...
T Consensus 81 ~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~ 160 (198)
T cd02023 81 VYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVK 160 (198)
T ss_pred ccccccCcccCCceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhh
Confidence 99999987543 3356678999999999998778999999999999999999999999999899999999999886 578
Q ss_pred cchhhhccccCCCCcEEEecC
Q 048274 159 PDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 159 pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
|.|.+|+.|+++.||+||++.
T Consensus 161 ~~~~~~i~~~~~~aD~ii~~~ 181 (198)
T cd02023 161 PMHEQFIEPTKRYADVIIPRG 181 (198)
T ss_pred hhHHHhCccchhceeEEECCC
Confidence 899999999999999999874
No 16
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.96 E-value=9.3e-29 Score=235.39 Aligned_cols=181 Identities=21% Similarity=0.291 Sum_probs=146.4
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEccceecCCchhhhhhc--cCCCCccccchhHHHHHHHHHhcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYHSLDRTGRKEKG--VTALDPRANNFDLMYEQVKAMKDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyhr~dr~~~~~~~--~~~~~Pea~d~d~L~~~L~~L~~G 74 (329)
+.||||+|++|||||| ++.++..+. +..+.++++|+||.+ +..+...+ .....|+++|.+.+.+.|..++.|
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~-~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g 140 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHP-NQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSG 140 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccccc-HHHHHHcCCccccCCChhccHHHHHHHHHHHHCC
Confidence 4699999999999999 777777775 236999999999985 33333222 234579999999999999999999
Q ss_pred Cc-eeccccccccCCCCC--CcccCCCcEEEEEccccccchh----------hhccCCEEEEEECCHHHHHHHhhccccc
Q 048274 75 VS-VEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDAR----------VRELLDFSIYLDISNEVKFAWKIQRDMT 141 (329)
Q Consensus 75 ~~-i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~~~----------lr~~~D~~IyVD~~~evrl~rkI~RD~~ 141 (329)
++ +..|+|||.+++..+ ...+.+.+|||+||++.|+.+. +++++|++||||++.+++++|+++|+..
T Consensus 141 ~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~ 220 (290)
T TIGR00554 141 KPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLK 220 (290)
T ss_pred CCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHH
Confidence 86 999999999998654 3456789999999999998665 5799999999999999999999999643
Q ss_pred c---------------cCCchhhHHH----HHh-hcccchhhhccccCCCCcEEEecCCCCC
Q 048274 142 E---------------RGHSLESIKA----SIE-ARKPDFDAYIDPQKQYADAVIEVLPTQL 183 (329)
Q Consensus 142 e---------------RG~s~E~V~~----~i~-~r~pd~~~yI~Pqk~~ADiVI~~~p~~~ 183 (329)
. +|.|.++..+ .|. ...|++.+||.|++.+||+|+.....+.
T Consensus 221 l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~ 282 (290)
T TIGR00554 221 FREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHA 282 (290)
T ss_pred HHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCc
Confidence 2 2566655544 355 5799999999999999999998765544
No 17
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.95 E-value=5.4e-28 Score=218.70 Aligned_cols=176 Identities=27% Similarity=0.535 Sum_probs=152.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCc--hhhhhhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDR--TGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr--~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
.+|+|+|++|||||| ++.+++.+....+.++++|+||.... ......+..+..|+++|.+.+.+.|..++.|+.+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~~ 86 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEec
Confidence 589999999999998 88888887655789999999987521 112233555668999999999999999999999999
Q ss_pred cccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hc
Q 048274 80 PIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-AR 157 (329)
Q Consensus 80 P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r 157 (329)
|.||+.+++.. +...+++.+++|+||+++++.+.+++.+|.+|||+++.++++.|+++||...||++.+++.+.|. ..
T Consensus 87 p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~ 166 (207)
T TIGR00235 87 PVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTV 166 (207)
T ss_pred ccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHhh
Confidence 99999877653 34566788999999999998788999999999999999999999999999999999999999885 67
Q ss_pred ccchhhhccccCCCCcEEEec
Q 048274 158 KPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 158 ~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+|.|..|+.|++.+||+||++
T Consensus 167 ~~~~~~~i~~~~~~Ad~vi~~ 187 (207)
T TIGR00235 167 RPMYEQFVEPTKQYADLIIPE 187 (207)
T ss_pred hhhHHHhCcccccccEEEEcC
Confidence 999999999999999999996
No 18
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=3.3e-27 Score=237.74 Aligned_cols=306 Identities=25% Similarity=0.313 Sum_probs=233.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc-------cCCeEEEEccceecC-Cch--hh-hhhccCCCCccccchhHHHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI-------SDTTTVICLDDYHSL-DRT--GR-KEKGVTALDPRANNFDLMYEQVKA 70 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~-------~~~v~vI~~Ddyhr~-dr~--~~-~~~~~~~~~Pea~d~d~L~~~L~~ 70 (329)
++||+.|+++||||| +..+-..|. ...+..+++|.||+. ... .. .+..+++.+|+++|++.+...++.
T Consensus 45 ~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~~~~ 124 (473)
T KOG4203|consen 45 FVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLTLKN 124 (473)
T ss_pred EEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHHHHhc
Confidence 589999999999999 888777777 568999999999985 211 12 222478889999999999999999
Q ss_pred HhcCCceeccccccccCCCCC--CcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 71 MKDGVSVEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 71 L~~G~~i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
+++|++++.|.|++.++...+ +..+.|.+++++||++.+|++++++++|.++|||++.+++++||+.||+.+||++.+
T Consensus 125 ~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~~l~ 204 (473)
T KOG4203|consen 125 LKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGRDLE 204 (473)
T ss_pred ccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhcccHH
Confidence 999999999999999998754 467789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHh-hcccchhhhccccCCCCcEEEecCCCCCCCCCCCCceEEEEEEEecCCCCCCccccccCCCcccccccCCcc
Q 048274 149 SIKASIE-ARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTIEWIPCGRKL 227 (329)
Q Consensus 149 ~V~~~i~-~r~pd~~~yI~Pqk~~ADiVI~~~p~~~~p~~~~~~~l~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (329)
.+..++. .+.|+|..||+|++++||++|++.....++..-....++.+|.++...+-.+..+ +.-+|..+..++
T Consensus 205 ~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~~~~~~l~~~~~-----~l~~t~~i~~~~ 279 (473)
T KOG4203|consen 205 SILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAEKSYVRLYNNVL-----SLPDTNQIKGKL 279 (473)
T ss_pred HHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhccccccccccce-----ecCCccccCCce
Confidence 9999987 5999999999999999999999999887765444445566665555443222222 233455666777
Q ss_pred cccCCCeeEEecCCccCCceee-EEEEcCCCCChhHHHHHHHhhccccccchhhHHHHHHhccCCCCCCChhHHHHHHHH
Q 048274 228 TCSYPGIKFSYGPDAYFGHEVS-ILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVG 306 (329)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~-~l~~dg~~~~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 306 (329)
+|..+..+-......|.-+-+. +++..+..-.+.+......+......+.++ +|.....--..|.+.++++-.+..+
T Consensus 280 t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~--~~i~gv~i~r~g~~~~~alr~~~~~ 357 (473)
T KOG4203|consen 280 TLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFC--KQICGVSIPRSGESMETALRAACKG 357 (473)
T ss_pred eEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhccccc--chhccCCCCcchhHHHHHHHHHcCC
Confidence 7777777765555555555555 444444444433333322333333333334 5555566666777888888888888
Q ss_pred HHHHHHHHH
Q 048274 307 LKIRDLYEQ 315 (329)
Q Consensus 307 ~~~~~~~~~ 315 (329)
.+|-++.++
T Consensus 358 vri~~il~q 366 (473)
T KOG4203|consen 358 VRIGKILIQ 366 (473)
T ss_pred ceeeeeEee
Confidence 888887775
No 19
>PRK06696 uridine kinase; Validated
Probab=99.93 E-value=2e-25 Score=204.39 Aligned_cols=177 Identities=20% Similarity=0.255 Sum_probs=137.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhhccC---CCCccccchhHHHHHHHHH-hcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEKGVT---ALDPRANNFDLMYEQVKAM-KDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~~~~---~~~Pea~d~d~L~~~L~~L-~~G 74 (329)
+.+|||+|++|||||| |+.|++.|... .+.++++||||++. ..+.+.+.. -+.+.++|+++|.+.|..+ ..+
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~-~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~~ 100 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR-VIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPN 100 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH-HHHHHcCCCChhhcCccccCHHHHHHHHHhhccCC
Confidence 4599999999999999 99999999754 46667899999963 333332211 1224789999999987764 343
Q ss_pred --CceeccccccccCCCC--CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 75 --VSVEKPIYNHVTGLLD--PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 75 --~~i~~P~Yd~~tg~~~--~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
..+..|.||+.++++. .+..+++.++||+||.+++. +.+++++|++|||+++.+++++|++.||...||...+..
T Consensus 101 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~ 179 (223)
T PRK06696 101 GDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-PELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAE 179 (223)
T ss_pred CceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-hhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHH
Confidence 3578889999988754 34556678899999999764 789999999999999999999999999998999644444
Q ss_pred HHHHhhcccchhhhcccc--CCCCcEEEecCC
Q 048274 151 KASIEARKPDFDAYIDPQ--KQYADAVIEVLP 180 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pq--k~~ADiVI~~~p 180 (329)
...+.+.+|.+..|+.++ +++||+||++.-
T Consensus 180 ~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 180 KMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 444557788888887665 789999998743
No 20
>PRK07667 uridine kinase; Provisional
Probab=99.91 E-value=3.1e-24 Score=192.67 Aligned_cols=166 Identities=19% Similarity=0.284 Sum_probs=127.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhhccC-CCC--ccccchhHHHH-HHHHHhcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEKGVT-ALD--PRANNFDLMYE-QVKAMKDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~~~~-~~~--Pea~d~d~L~~-~L~~L~~G 74 (329)
|.+|||+|++|||||| |+.|++.|... .+.++++||||+. +..+...+.. +.. ..++|++.|.+ .+..++.|
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~-~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE-RNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch-hhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 5799999999999999 88888888653 6889999999984 3223222221 221 23567777875 46899999
Q ss_pred CceeccccccccCCCCC-CcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHH
Q 048274 75 VSVEKPIYNHVTGLLDP-PELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS 153 (329)
Q Consensus 75 ~~i~~P~Yd~~tg~~~~-~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~ 153 (329)
+.+.+|.||+.+++... +..+++.++||+||++++. +.+++++|.+|||++|++++++|.+.|| |.+.++...+
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~-~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~~~~~~~~~r 170 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR-KEWRDFFHYMVYLDCPRETRFLRESEET----QKNLSKFKNR 170 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhh-hhHHhhceEEEEEECCHHHHHHHHhccc----HhHHHHHHHH
Confidence 99999999999987654 3456678999999999654 7799999999999999999999999876 4455555555
Q ss_pred Hhhcccchhhhc---cccCCCCcEEEe
Q 048274 154 IEARKPDFDAYI---DPQKQYADAVIE 177 (329)
Q Consensus 154 i~~r~pd~~~yI---~Pqk~~ADiVI~ 177 (329)
|. |.+..|+ .| +.+||+||+
T Consensus 171 ~~---~a~~~y~~~~~~-~~~ad~i~~ 193 (193)
T PRK07667 171 YW---KAEDYYLETESP-KDRADLVIK 193 (193)
T ss_pred hH---HHHHHHHhhcCh-HhhCcEEeC
Confidence 43 6666664 46 799999985
No 21
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.91 E-value=1.9e-24 Score=193.94 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchh-hhh-hccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTG-RKE-KGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~-~~~-~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
||+|+|++|||||| |+.|++.+. ++.+|++|+||++.+.. ... ...++.+|+++|+++|.++|..+++|+.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~ 78 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF 78 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence 69999999999998 777888774 58999999999974321 122 23467789999999999999999999887777
Q ss_pred ccccccCCCC---------------CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCC
Q 048274 81 IYNHVTGLLD---------------PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGH 145 (329)
Q Consensus 81 ~Yd~~tg~~~---------------~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~ 145 (329)
.+++....-. ....+++.++|||||+++++.+.+++++|++|||+++.+++++|+++|| |+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~----~~ 154 (187)
T cd02024 79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREART----GY 154 (187)
T ss_pred ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcC----Cc
Confidence 6666443211 1234567889999999999988999999999999999999999999998 45
Q ss_pred ch-----hhHHHHHh-hcccchhhh
Q 048274 146 SL-----ESIKASIE-ARKPDFDAY 164 (329)
Q Consensus 146 s~-----E~V~~~i~-~r~pd~~~y 164 (329)
.+ ++...++. .+||+|.+.
T Consensus 155 ~~~~~~w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 155 VTLEGFWPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cccCcccCCCCcccccccchhHHHH
Confidence 42 23445665 689999875
No 22
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.90 E-value=2.8e-23 Score=190.95 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=144.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEE-EEccceecCCchhhhhhcc--CCCCccccchhHHHHHHHHHhcCC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTV-ICLDDYHSLDRTGRKEKGV--TALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~v-I~~Ddyhr~dr~~~~~~~~--~~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
+.+|||+|++|||||| ++.+++.|... .+.+ |++|+||.++.. +...+. ....|+++|.+.+.+.|..++.|+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~-~~~~g~~~~~~~~~~~d~~~~~~~l~~l~~~~ 111 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAV-LDAHGLRPRKGAPETFDVAGLAALLRRLRAGD 111 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHH-HHhcccccccCCCCCCCHHHHHHHHHHHHcCC
Confidence 3589999999999999 88899888764 3556 999999986432 222222 133688999999999999999987
Q ss_pred -ceeccccccccCCCC-CCcccC-CCcEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 76 -SVEKPIYNHVTGLLD-PPELIK-PPKILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 76 -~i~~P~Yd~~tg~~~-~~~~i~-p~~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
.+..|.||+..++.. ++..+. ..+++|+||.+.++.. .+++.+|++|||+++.+++++|.++|+. ++|+|.+
T Consensus 112 ~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~-~~g~s~~ 190 (229)
T PRK09270 112 DEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKL-AGGLSPE 190 (229)
T ss_pred CceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHH-hcCCCHH
Confidence 899999999887633 344443 5789999999998742 5778999999999999999999999975 6899999
Q ss_pred hHHHHHhh-cccchhhhccccCCCCcEEEecCCC
Q 048274 149 SIKASIEA-RKPDFDAYIDPQKQYADAVIEVLPT 181 (329)
Q Consensus 149 ~V~~~i~~-r~pd~~~yI~Pqk~~ADiVI~~~p~ 181 (329)
++.+++.. ++|.+ .||.|++.+||+||+|.-|
T Consensus 191 ~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~ 223 (229)
T PRK09270 191 AAEAFVLRNDGPNA-RLVLETSRPADLVLEMTAT 223 (229)
T ss_pred HHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCC
Confidence 99999974 68877 6999999999999998655
No 23
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.86 E-value=2.2e-21 Score=181.46 Aligned_cols=158 Identities=22% Similarity=0.288 Sum_probs=125.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccceecCCchhhhhhccCCC--CccccchhHHHHHHHHHhcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDDYHSLDRTGRKEKGVTAL--DPRANNFDLMYEQVKAMKDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Ddyhr~dr~~~~~~~~~~~--~Pea~d~d~L~~~L~~L~~G 74 (329)
+.||||+|+.|+|||| |..++..|.. ..|.+|.||.||.++ ...++.++-.. .|+++|...|.+.+..++.|
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n-~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~ 160 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPN-AVLDERGLMARKGFPESYDVAALLRFLSDVKAG 160 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCH-hHhhhccccccCCCCccccHHHHHHHHHHHhcC
Confidence 5699999999999999 7777777753 259999999999873 22222222222 49999999999999999988
Q ss_pred Cc-eeccccccccCCCCC--CcccCCCcEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhhcccccccCCch
Q 048274 75 VS-VEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSL 147 (329)
Q Consensus 75 ~~-i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~ 147 (329)
++ +.+|+|||.+++..+ ...++.++|||+||++.|.++ .+.++||++||||++.++-.+|.+.|.+.- |.+.
T Consensus 161 ~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~-g~~a 239 (283)
T COG1072 161 KPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKF-GLTA 239 (283)
T ss_pred CCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhc-ccch
Confidence 76 999999999998764 455668999999999999976 578999999999999999999999998764 6666
Q ss_pred hhHHHHHh-hcccch
Q 048274 148 ESIKASIE-ARKPDF 161 (329)
Q Consensus 148 E~V~~~i~-~r~pd~ 161 (329)
.+..+.+. +..|.-
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (283)
T COG1072 240 FEDPASYFHNYAPLS 254 (283)
T ss_pred hhChhhHhhccCcch
Confidence 66565554 333433
No 24
>PRK06547 hypothetical protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=160.05 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=113.4
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
..+|+|+|++|||||| |+.+++.+ ++.+|++|+||.. +.++ ..+...+.+.+.. .|++...|
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~---~~~~~~~d~~~~~-~~~~-----------~~~~~~l~~~~l~--~g~~~~~~ 77 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART---GFQLVHLDDLYPG-WHGL-----------AAASEHVAEAVLD--EGRPGRWR 77 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh---CCCeecccceecc-cccC-----------ChHHHHHHHHHHh--CCCCceec
Confidence 4689999999999997 66666664 5889999999963 1111 1233456666655 68887778
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccchhhhccCC-----EEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLD-----FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE 155 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D-----~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~ 155 (329)
||+.++....+..+.+.++||+||.++++ +.+++.+| ++|||++|.+++++|+++||. . ....|.
T Consensus 78 -yd~~~~~~~~~~~l~~~~vVIvEG~~al~-~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~----~----~~~~~~ 147 (172)
T PRK06547 78 -WDWANNRPGDWVSVEPGRRLIIEGVGSLT-AANVALASLLGEVLTVWLDGPEALRKERALARDP----D----YAPHWE 147 (172)
T ss_pred -CCCCCCCCCCcEEeCCCCeEEEEehhhcc-HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCc----h----hhHHHH
Confidence 99998887777777788999999999996 67899999 999999999999999999993 3 233444
Q ss_pred hcccchhhhc--cccCCCCcEEEe
Q 048274 156 ARKPDFDAYI--DPQKQYADAVIE 177 (329)
Q Consensus 156 ~r~pd~~~yI--~Pqk~~ADiVI~ 177 (329)
+-+|.++.|. .+.+++||+++.
T Consensus 148 ~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 148 MWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHHHhcCCChhccEEEec
Confidence 4455666664 334789999985
No 25
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.79 E-value=4.8e-19 Score=174.99 Aligned_cols=165 Identities=14% Similarity=0.266 Sum_probs=124.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceecCCc--hhhhhhc-----cCC-CCccccchhHHHHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHSLDR--TGRKEKG-----VTA-LDPRANNFDLMYEQVKAM 71 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr~dr--~~~~~~~-----~~~-~~Pea~d~d~L~~~L~~L 71 (329)
.||||.|++|||||| ++.+...|.. ..+.+|++||||.... ....+.. +.+ -.|...|..++.+.|.++
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L 292 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETLEAL 292 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHHHHH
Confidence 589999999999998 7777777743 3599999999998522 2221111 111 136788888877777766
Q ss_pred ----hcCCceeccccccccCC----CC---CCccc-CCCcEEEEEccccccch-------------------------hh
Q 048274 72 ----KDGVSVEKPIYNHVTGL----LD---PPELI-KPPKILVIEGLHPMYDA-------------------------RV 114 (329)
Q Consensus 72 ----~~G~~i~~P~Yd~~tg~----~~---~~~~i-~p~~vlIvEGl~~l~~~-------------------------~l 114 (329)
++|++++.|+||+.++. .. .|..+ .|.+|||+||++.++.+ .+
T Consensus 293 ~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w 372 (460)
T PLN03046 293 SKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYYDAW 372 (460)
T ss_pred HHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHHHHH
Confidence 67999999999999843 32 35544 58899999999888743 12
Q ss_pred hccCCEEEEEECC-HHHHHHHhhccccccc-----CCchhhHHHHHhhcccchhhhccc
Q 048274 115 RELLDFSIYLDIS-NEVKFAWKIQRDMTER-----GHSLESIKASIEARKPDFDAYIDP 167 (329)
Q Consensus 115 r~~~D~~IyVD~~-~evrl~rkI~RD~~eR-----G~s~E~V~~~i~~r~pd~~~yI~P 167 (329)
...+|.-|++.++ .+..++||.+++.+.| |+|.|+|.+.+...||.|+.|...
T Consensus 373 ~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPaY~~y~~~ 431 (460)
T PLN03046 373 DKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYKAYLPT 431 (460)
T ss_pred HHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHHHH
Confidence 2357888888875 6999999999987655 899999999999999999999754
No 26
>PLN02796 D-glycerate 3-kinase
Probab=99.72 E-value=2.6e-17 Score=159.81 Aligned_cols=164 Identities=14% Similarity=0.226 Sum_probs=126.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCC--chhhhhhc-cC-----CCCccccchhHHHHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLD--RTGRKEKG-VT-----ALDPRANNFDLMYEQVKAM 71 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~d--r~~~~~~~-~~-----~~~Pea~d~d~L~~~L~~L 71 (329)
.+|||+|++|||||| ++.++..|... .+.+|++||||... +....... -+ .-.|.++|++++.+.|.+|
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L 180 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETLEAL 180 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHH
Confidence 479999999999999 88888888653 58999999999852 22222211 11 1247899999999999988
Q ss_pred h----cCCceeccccccccCC----CC---CCccc-CCCcEEEEEccccccch-------------------------hh
Q 048274 72 K----DGVSVEKPIYNHVTGL----LD---PPELI-KPPKILVIEGLHPMYDA-------------------------RV 114 (329)
Q Consensus 72 ~----~G~~i~~P~Yd~~tg~----~~---~~~~i-~p~~vlIvEGl~~l~~~-------------------------~l 114 (329)
+ .|+++..|+||+..+. +. .|..+ .|.+|||+||++..+.+ .+
T Consensus 181 ~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~~~w 260 (347)
T PLN02796 181 RKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYYDAW 260 (347)
T ss_pred HhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHHHHH
Confidence 8 5889999999999843 32 46566 58899999999988843 23
Q ss_pred hccCCEEEEEECC-HHHHHHHhhccccc-----ccCCchhhHHHHHhhcccchhhhcc
Q 048274 115 RELLDFSIYLDIS-NEVKFAWKIQRDMT-----ERGHSLESIKASIEARKPDFDAYID 166 (329)
Q Consensus 115 r~~~D~~IyVD~~-~evrl~rkI~RD~~-----eRG~s~E~V~~~i~~r~pd~~~yI~ 166 (329)
..++|.-|++.++ .+.-+.||.+...+ ..|+|.|+|.+.+.+.||.|+.|..
T Consensus 261 ~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~~ 318 (347)
T PLN02796 261 DKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYLP 318 (347)
T ss_pred HHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999984 78889998776532 2479999999999999999999853
No 27
>PRK08233 hypothetical protein; Provisional
Probab=99.70 E-value=9.5e-17 Score=140.52 Aligned_cols=148 Identities=14% Similarity=0.248 Sum_probs=109.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCch-hh---hhhccCCCCccccchhHHHHHHHHHhcCCce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRT-GR---KEKGVTALDPRANNFDLMYEQVKAMKDGVSV 77 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~-~~---~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i 77 (329)
.+|+|+|++|||||| |+.|+..|. .+.++++|+|+..... .. ...+.. .++.+++.+.+.+..+.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~-- 76 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDKGAN---YSEWVLTPLIKDIQELIAKS-- 76 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhhccCC---hhhhhhHHHHHHHHHHHcCC--
Confidence 799999999999998 777888775 3578899999864221 11 111212 25667777877777766432
Q ss_pred eccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhh----HHHH
Q 048274 78 EKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLES----IKAS 153 (329)
Q Consensus 78 ~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~----V~~~ 153 (329)
..++||+||.+....+.+++.+|++|||+++++++++|+++|+.... +.++ ....
T Consensus 77 -------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~--~~~~~~~~~~~~ 135 (182)
T PRK08233 77 -------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKED--TGNEIHNDLKHY 135 (182)
T ss_pred -------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhc--cccchhhHHHHH
Confidence 13689999988877778899999999999999999999999985432 2223 3334
Q ss_pred HhhcccchhhhccccCCCCcEEEec
Q 048274 154 IEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 154 i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+.+++|.|.+++.+....|+++|++
T Consensus 136 ~~~~~~~y~~~~~~~~~~~~~vId~ 160 (182)
T PRK08233 136 LNYARPLYLEALHTVKPNADIVLDG 160 (182)
T ss_pred HHHHHHHHHHHhhcCccCCeEEEcC
Confidence 4578899999888887889999975
No 28
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.65 E-value=1e-16 Score=142.14 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=112.2
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCC---chhhhhhccCCCCc------cccchhHHHHHHHH----
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLD---RTGRKEKGVTALDP------RANNFDLMYEQVKA---- 70 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~d---r~~~~~~~~~~~~P------ea~d~d~L~~~L~~---- 70 (329)
+|||+|++|||||| +++.|.+.++.+|++|.+.+.- ...........|+. ..+|...|.+.+..
T Consensus 1 ii~itG~~gsGKst---~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 77 (179)
T cd02022 1 IIGLTGGIGSGKST---VAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK 77 (179)
T ss_pred CEEEECCCCCCHHH---HHHHHHHCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH
Confidence 58999999999995 5555554579999999998741 11222222233332 35666666665433
Q ss_pred HhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 71 MKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 71 L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
++.-+.+.+|.+......+. .......++|+|+.+.+. ..+.+++|..|||++|++++++|.+.|| |.|.+++
T Consensus 78 ~~~l~~i~hp~i~~~~~~~~--~~~~~~~~vive~plL~e-~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~ 150 (179)
T cd02022 78 RKKLEAITHPLIRKEIEEQL--AEARKEKVVVLDIPLLFE-TGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHccCCCEEEEEehHhhc-CCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 22334566775433221111 111224699999888765 6688999999999999999999999996 8899999
Q ss_pred HHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 151 KASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.+++.++++...+ +..||+||.|.
T Consensus 151 ~~r~~~Q~~~~~~-----~~~aD~vI~N~ 174 (179)
T cd02022 151 EARIASQMPLEEK-----RARADFVIDNS 174 (179)
T ss_pred HHHHHhcCCHHHH-----HHhCCEEEECc
Confidence 9999999987654 68999999984
No 29
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.63 E-value=3.9e-17 Score=145.88 Aligned_cols=160 Identities=20% Similarity=0.183 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC--C-chhhhhhccCCCCcc------ccchhHHHHHHH----H
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL--D-RTGRKEKGVTALDPR------ANNFDLMYEQVK----A 70 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~--d-r~~~~~~~~~~~~Pe------a~d~d~L~~~L~----~ 70 (329)
+|||+|++||||| ++++.|.+.++.+|++|...+. . ...........|+++ ..|...|.+.+. .
T Consensus 2 iIglTG~igsGKS---tv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 2 IIGLTGGIGSGKS---TVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEESTTSSHH---HHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred EEEEECCCcCCHH---HHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 7999999999999 6888888789999999999653 2 222222223334433 355555554432 1
Q ss_pred HhcCCceeccccccccCCCCCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhh
Q 048274 71 MKDGVSVEKPIYNHVTGLLDPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLES 149 (329)
Q Consensus 71 L~~G~~i~~P~Yd~~tg~~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~ 149 (329)
++.-+.+.+|.-.... ..+ ......+++|+|....+. ..+..+||..|+|.+|++++++|.++|| |+|.++
T Consensus 79 ~~~L~~iihP~I~~~~---~~~~~~~~~~~~~v~e~pLL~E-~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 79 LKKLENIIHPLIREEI---EKFIKRNKSEKVVVVEIPLLFE-SGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHCHSTSEEEEE-TTTTT-TTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHHhHHHHHHH---HHHHHhccCCCEEEEEcchhhh-hhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 1112335555322111 111 111123899999777554 6899999999999999999999999995 999999
Q ss_pred HHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 150 IKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 150 V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.+++.+|+|..++ ++.||+||+|-
T Consensus 151 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~ 175 (180)
T PF01121_consen 151 AEARIASQMPDEEK-----RKRADFVIDNN 175 (180)
T ss_dssp HHHHHHTS--HHHH-----HHH-SEEEE-S
T ss_pred HHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence 99999999999998 69999999984
No 30
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.59 E-value=8e-16 Score=138.36 Aligned_cols=163 Identities=19% Similarity=0.162 Sum_probs=110.0
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC--C-chhhhhhccCCCCc------cccchhHHHHHHHH-
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL--D-RTGRKEKGVTALDP------RANNFDLMYEQVKA- 70 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~--d-r~~~~~~~~~~~~P------ea~d~d~L~~~L~~- 70 (329)
|-++|||+|++||||| ++++.|.+.++.+|++|.+.+. . ..+..+.....|+. ..+|...|.+.+..
T Consensus 1 ~~~~i~ltG~~gsGKs---t~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 1 MMLIIGLTGGIGSGKS---TVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred CCeEEEEECCCCCCHH---HHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 4468999999999999 5566665557999999999763 1 22222222233333 34555555554421
Q ss_pred ---HhcCCceeccccccccCCCCCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCc
Q 048274 71 ---MKDGVSVEKPIYNHVTGLLDPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHS 146 (329)
Q Consensus 71 ---L~~G~~i~~P~Yd~~tg~~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s 146 (329)
+..-+.+.+|.--. .+..+ .......++|+|+..++. ..+.+.||..|+|++|++++++|.++|| |.|
T Consensus 78 ~~~~~~L~~i~hP~v~~---~~~~~~~~~~~~~~vv~e~pll~e-~~~~~~~D~vi~V~a~~e~~~~Rl~~R~----~~s 149 (194)
T PRK00081 78 PEARKKLEAILHPLIRE---EILEQLQEAESSPYVVLDIPLLFE-NGLEKLVDRVLVVDAPPETQLERLMARD----GLS 149 (194)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHcccCCEEEEEehHhhc-CCchhhCCeEEEEECCHHHHHHHHHHcC----CCC
Confidence 11112344552111 11111 111223799999888765 6788999999999999999999988884 889
Q ss_pred hhhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 147 LESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 147 ~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.+++..++.+++|..++ ...||+||+|.
T Consensus 150 ~e~~~~ri~~Q~~~~~~-----~~~ad~vI~N~ 177 (194)
T PRK00081 150 EEEAEAIIASQMPREEK-----LARADDVIDNN 177 (194)
T ss_pred HHHHHHHHHHhCCHHHH-----HHhCCEEEECC
Confidence 99999999999987765 58899999984
No 31
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.59 E-value=1.2e-15 Score=138.92 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=110.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc-CCeEEEEccceecC--CchhhhhhccCCCCcc-----ccchhHHHHHHHHH---
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS-DTTTVICLDDYHSL--DRTGRKEKGVTALDPR-----ANNFDLMYEQVKAM--- 71 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~-~~v~vI~~Ddyhr~--dr~~~~~~~~~~~~Pe-----a~d~d~L~~~L~~L--- 71 (329)
.+|||+|++||||| ++++.|.+ .++.++++|...+. ...+........|+++ .+|...|.+.+..-
T Consensus 7 ~~IglTG~iGsGKS---tv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 7 YPIGITGGIASGKS---TATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred EEEEEECCCCCCHH---HHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 57999999999999 56666654 36889999999763 2222222333445443 34555555544221
Q ss_pred -hcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhh--hccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 72 -KDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARV--RELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 72 -~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~l--r~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
+.-+.+.+|.-.... ..+..-.+..++++|....+. ..+ .+.||..|+|++|++++++|.++|| |.|.+
T Consensus 84 ~~~Le~i~HP~V~~~~---~~~~~~~~~~~vv~eipLL~E-~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd----~~s~~ 155 (204)
T PRK14733 84 KKWLEDYLHPVINKEI---KKQVKESDTVMTIVDIPLLGP-YNFRHYDYLKKVIVIKADLETRIRRLMERD----GKNRQ 155 (204)
T ss_pred HHHHHhhhhHHHHHHH---HHHHHhcCCCeEEEEechhhh-ccCchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 112245555322111 111111134689999777654 333 5689999999999999999999885 88999
Q ss_pred hHHHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 149 SIKASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
++.+++.+|+|..++ ++.||+||+|--
T Consensus 156 ~a~~ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 156 QAVAFINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred HHHHHHHhCCCHHHH-----HHhCCEEEECcC
Confidence 999999999999998 799999999854
No 32
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.59 E-value=9.5e-16 Score=138.28 Aligned_cols=162 Identities=20% Similarity=0.138 Sum_probs=108.9
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccC-CeEEEEccceecC---CchhhhhhccCCCCcc-------ccchhHHHHHHHH-
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISD-TTTVICLDDYHSL---DRTGRKEKGVTALDPR-------ANNFDLMYEQVKA- 70 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~-~v~vI~~Ddyhr~---dr~~~~~~~~~~~~Pe-------a~d~d~L~~~L~~- 70 (329)
++|||+|++||||| ++++.|.+. ++.+|++|+..+. ...+..+.....|+++ .+|...|.+.+..
T Consensus 2 ~~i~itG~~gsGKs---t~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKS---TVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHH---HHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 47999999999999 566666655 7999999999763 1222222223333332 3555555544321
Q ss_pred ---HhcCCceeccc-cccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCc
Q 048274 71 ---MKDGVSVEKPI-YNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHS 146 (329)
Q Consensus 71 ---L~~G~~i~~P~-Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s 146 (329)
++.-+.+.+|. +......+ ......+++|+|-..++. ..+.+++|..|||++|++++++|.++|| |.|
T Consensus 79 ~~~~~~l~~i~hP~i~~~~~~~~---~~~~~~~~vv~e~pll~E-~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s 150 (195)
T PRK14730 79 PEERRWLENLIHPYVRERFEEEL---AQLKSNPIVVLVIPLLFE-AKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLT 150 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH---HhcCCCCEEEEEeHHhcC-cchHhCCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 11112344552 21111111 111234689999776554 6788999999999999999999999996 889
Q ss_pred hhhHHHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 147 LESIKASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 147 ~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
.+++.+++..++|...+ +..||+||+|--
T Consensus 151 ~e~~~~ri~~Q~~~~~k-----~~~aD~vI~N~g 179 (195)
T PRK14730 151 EEEAEARINAQWPLEEK-----VKLADVVLDNSG 179 (195)
T ss_pred HHHHHHHHHhCCCHHHH-----HhhCCEEEECCC
Confidence 99999999999986654 789999999843
No 33
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.57 E-value=2.6e-15 Score=135.95 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=108.1
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC---Cchhhhhh-----ccCCCCc-cccchhHHHHHHHH--
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL---DRTGRKEK-----GVTALDP-RANNFDLMYEQVKA-- 70 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~---dr~~~~~~-----~~~~~~P-ea~d~d~L~~~L~~-- 70 (329)
=.+|||+|++||||| ++++.|...++.+|++|+..+. ......+. |...+.| ..+|...|.+.+..
T Consensus 1 m~~igitG~igsGKs---t~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~ 77 (200)
T PRK14734 1 MLRIGLTGGIGSGKS---TVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASP 77 (200)
T ss_pred CeEEEEECCCCCCHH---HHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCH
Confidence 047999999999999 5666666668999999987543 11222222 3333333 34555555543321
Q ss_pred --HhcCCceeccccccccCCCCCCc-c--cCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCC
Q 048274 71 --MKDGVSVEKPIYNHVTGLLDPPE-L--IKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGH 145 (329)
Q Consensus 71 --L~~G~~i~~P~Yd~~tg~~~~~~-~--i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~ 145 (329)
++.-+.+.+|.--. .+.++. . -....++++|....+ ...+.+.+|.+|||++|++++++|.++| ||+
T Consensus 78 ~~~~~le~i~hP~v~~---~~~~~~~~~~~~~~~~vv~e~plL~-e~g~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~ 149 (200)
T PRK14734 78 EQTALLNAITHPRIAE---ETARRFNEARAQGAKVAVYDMPLLV-EKGLDRKMDLVVVVDVDVEERVRRLVEK----RGL 149 (200)
T ss_pred HHHHHHHHhhCHHHHH---HHHHHHHHHHhcCCCEEEEEeecee-EcCccccCCeEEEEECCHHHHHHHHHHc----CCC
Confidence 11112344553211 111110 0 123468888866644 4678889999999999999999988877 589
Q ss_pred chhhHHHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 146 SLESIKASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 146 s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
|.+++.+++.+++|.+.+ +..||+||+|.-
T Consensus 150 s~e~~~~ri~~Q~~~~~k-----~~~ad~vI~N~g 179 (200)
T PRK14734 150 DEDDARRRIAAQIPDDVR-----LKAADIVVDNNG 179 (200)
T ss_pred CHHHHHHHHHhcCCHHHH-----HHhCCEEEECcC
Confidence 999999999999999876 589999999853
No 34
>PLN02422 dephospho-CoA kinase
Probab=99.56 E-value=2.4e-15 Score=139.32 Aligned_cols=165 Identities=19% Similarity=0.121 Sum_probs=113.5
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC---CchhhhhhccCCCCcc------ccchhHHHHHHH--
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL---DRTGRKEKGVTALDPR------ANNFDLMYEQVK-- 69 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~---dr~~~~~~~~~~~~Pe------a~d~d~L~~~L~-- 69 (329)
|+ +|||+|++||||| ++++.|...++.+|++|+..+. ...+........|+++ .+|...|.+.+.
T Consensus 1 M~-~igltG~igsGKs---tv~~~l~~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d 76 (232)
T PLN02422 1 MR-VVGLTGGIASGKS---TVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSD 76 (232)
T ss_pred Ce-EEEEECCCCCCHH---HHHHHHHHCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCC
Confidence 64 7999999999999 5677776668999999999763 1222223333444443 445555555432
Q ss_pred --HHhcCCceeccccccccCC-CCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCc
Q 048274 70 --AMKDGVSVEKPIYNHVTGL-LDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHS 146 (329)
Q Consensus 70 --~L~~G~~i~~P~Yd~~tg~-~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s 146 (329)
.++.-+.+.+|.--..... ... ......+++|+|...++. ..+.+.||..|+|++|++++++|-++|| |.|
T Consensus 77 ~~~~~~Le~IlHP~V~~~~~~~~~~-~~~~~~~~vv~eipLL~E-~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s 150 (232)
T PLN02422 77 PSKRQLLNRLLAPYISSGIFWEILK-LWLKGCKVIVLDIPLLFE-TKMDKWTKPVVVVWVDPETQLERLMARD----GLS 150 (232)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-HHhcCCCEEEEEehhhhh-cchhhhCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 1111234556632111100 000 011234699999777664 6788899999999999999999999985 899
Q ss_pred hhhHHHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 147 LESIKASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 147 ~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
.|++.+++.+++|..++ ++.||+||+|--
T Consensus 151 ~eea~~Ri~~Q~~~eek-----~~~AD~VI~N~g 179 (232)
T PLN02422 151 EEQARNRINAQMPLDWK-----RSKADIVIDNSG 179 (232)
T ss_pred HHHHHHHHHHcCChhHH-----HhhCCEEEECCC
Confidence 99999999999999876 689999999854
No 35
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.54 E-value=1.2e-14 Score=130.60 Aligned_cols=168 Identities=11% Similarity=0.072 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCc-hhhhhh-ccCCCCccccchhHHHHHHHHHhcCCcee-
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDR-TGRKEK-GVTALDPRANNFDLMYEQVKAMKDGVSVE- 78 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr-~~~~~~-~~~~~~Pea~d~d~L~~~L~~L~~G~~i~- 78 (329)
.||||+|.+.||||| |+.+++.|. ++.+|+.||||+++. .+.... -.+|+.++++|+++|.+.++....++...
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 589999999999998 777777776 688999999999853 233333 34688999999999999998887763211
Q ss_pred -ccc-------cccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 79 -KPI-------YNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 79 -~P~-------Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
.+. ++|....+ -.......+||+||...+..+.+.+.+|.+|++.++.+.+..||-.| -||-+.+-
T Consensus 83 ~ar~~~v~~~~~~~~~~~~--q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~R----t~y~p~~t 156 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF--QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREAR----TYYPPDDT 156 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc--CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhccc----ccCCCCCC
Confidence 111 11111111 12223578999999999988889999999999999999988876655 35655443
Q ss_pred HHHHh-hcccchhhhccc--cCCCCcEEEecC
Q 048274 151 KASIE-ARKPDFDAYIDP--QKQYADAVIEVL 179 (329)
Q Consensus 151 ~~~i~-~r~pd~~~yI~P--qk~~ADiVI~~~ 179 (329)
-++. .+||.|+++..- ++++.|..+-|.
T Consensus 157 -gyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 157 -GYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred -ccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 5555 589999987533 344557777664
No 36
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.54 E-value=5.2e-15 Score=138.07 Aligned_cols=164 Identities=17% Similarity=0.097 Sum_probs=110.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc-CCeEEEEccceecC--C-chhhhhhccCCCCc------cccchhHHHHHHHH--
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS-DTTTVICLDDYHSL--D-RTGRKEKGVTALDP------RANNFDLMYEQVKA-- 70 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~-~~v~vI~~Ddyhr~--d-r~~~~~~~~~~~~P------ea~d~d~L~~~L~~-- 70 (329)
.+|||||++||||| ++++.|.+ .++.||++|...+. . .....+.....|+. ..+|...|.+.+..
T Consensus 2 ~iIGlTGgIgSGKS---tVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~ 78 (244)
T PTZ00451 2 ILIGLTGGIACGKS---TVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDA 78 (244)
T ss_pred eEEEEECCCCCCHH---HHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCH
Confidence 58999999999999 68888876 48999999999663 1 22222222333322 34555566554321
Q ss_pred --HhcCCceeccc-cccccCCCCC--C----ccc--CCCcEEEEEccccccchh-hhccCCEEEEEECCHHHHHHHhhcc
Q 048274 71 --MKDGVSVEKPI-YNHVTGLLDP--P----ELI--KPPKILVIEGLHPMYDAR-VRELLDFSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 71 --L~~G~~i~~P~-Yd~~tg~~~~--~----~~i--~p~~vlIvEGl~~l~~~~-lr~~~D~~IyVD~~~evrl~rkI~R 138 (329)
++.-+.+.+|. +......+.+ | ... ....++|+|..+.+. .. ....+|..|+|+++++++++|.++|
T Consensus 79 ~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E-~~~~~~~~D~iv~V~a~~e~ri~RL~~R 157 (244)
T PTZ00451 79 QARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFE-TKTFTYFVSASVVVSCSEERQIERLRKR 157 (244)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhc-cCchhhcCCeEEEEECCHHHHHHHHHHc
Confidence 12223355552 1111111110 1 011 123599999888765 44 3567899999999999999998888
Q ss_pred cccccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 139 DMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 139 D~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+|.|.+++.+++.+++|..++ ++.||+||.|-
T Consensus 158 ----~g~s~eea~~Ri~~Q~~~~ek-----~~~aD~VI~N~ 189 (244)
T PTZ00451 158 ----NGFSKEEALQRIGSQMPLEEK-----RRLADYIIEND 189 (244)
T ss_pred ----CCCCHHHHHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence 489999999999999998775 78999999986
No 37
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=3.9e-15 Score=134.56 Aligned_cols=162 Identities=18% Similarity=0.096 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC--C-chhhhhhccCCCCcc------ccchhHHHHHHHHH---
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL--D-RTGRKEKGVTALDPR------ANNFDLMYEQVKAM--- 71 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~--d-r~~~~~~~~~~~~Pe------a~d~d~L~~~L~~L--- 71 (329)
+|||+|++||||| ++++.|...++.+|+.|...+. . .....+.....|+++ .+|...|.+.+..-
T Consensus 1 ~i~itG~~gsGKs---t~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~ 77 (196)
T PRK14732 1 LIGITGMIGGGKS---TALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK 77 (196)
T ss_pred CEEEECCCCccHH---HHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence 5899999999999 5777776668999999999663 1 222233334455554 34444454433211
Q ss_pred -hcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 72 -KDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 72 -~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
+.-+.+.+|.--..-..+- ......+++|+|...++. ..+...||..|||++|++++++|.++|| |.|.+++
T Consensus 78 ~~~L~~i~hP~v~~~~~~~~--~~~~~~~~vi~e~pLL~E-~~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a 150 (196)
T PRK14732 78 LKALNELIHPLVRKDFQKIL--QTTAEGKLVIWEVPLLFE-TDAYTLCDATVTVDSDPEESILRTISRD----GMKKEDV 150 (196)
T ss_pred HHHHHHHhhHHHHHHHHHHH--HHHhcCCcEEEEeeeeeE-cCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 1112355553211110000 111224688899766554 6778899999999999999999999995 8899999
Q ss_pred HHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 151 KASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
.+++.+++|..++ ++.||+||.|--
T Consensus 151 ~~ri~~Q~~~~~k-----~~~aD~vI~N~~ 175 (196)
T PRK14732 151 LARIASQLPITEK-----LKRADYIVRNDG 175 (196)
T ss_pred HHHHHHcCCHHHH-----HHhCCEEEECCC
Confidence 9999999986654 789999999843
No 38
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.53 E-value=2e-14 Score=131.80 Aligned_cols=174 Identities=16% Similarity=0.218 Sum_probs=130.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc-------cC--Ce-EEEEccceecCCchhhh------hhccCCCCccccchhHH
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI-------SD--TT-TVICLDDYHSLDRTGRK------EKGVTALDPRANNFDLM 64 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~-------~~--~v-~vI~~Ddyhr~dr~~~~------~~~~~~~~Pea~d~d~L 64 (329)
++++|++|+.|||||| ++.+++... ++ ++ .+|.||.||.+ |.+.. .+.--.-.|-++|-+++
T Consensus 119 ~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHls-r~~LD~f~dP~~AharRGapwTFD~~lf 197 (323)
T KOG2702|consen 119 EELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLS-RRCLDLFKDPQTAHARRGAPWTFDSNLF 197 (323)
T ss_pred hheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhh-HHHHHhhcChHHHHhhcCCCcccCHHHH
Confidence 5789999999999999 777766442 22 33 45999999986 22211 11111225778999999
Q ss_pred HHHHHHHhc--CCceeccccccccCCCCCC-cccC-CCcEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhh
Q 048274 65 YEQVKAMKD--GVSVEKPIYNHVTGLLDPP-ELIK-PPKILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKI 136 (329)
Q Consensus 65 ~~~L~~L~~--G~~i~~P~Yd~~tg~~~~~-~~i~-p~~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI 136 (329)
.+.++-++. -..+..|.|||..|+..+- .-+. -+.|||+||.+.++++ .+.+.+|.+.|+|++.+...+|.-
T Consensus 198 l~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa 277 (323)
T KOG2702|consen 198 LQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVA 277 (323)
T ss_pred HHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHH
Confidence 999999995 4578999999999986653 3444 4899999999999864 577889999999999999999999
Q ss_pred cccccccC--CchhhHHHHHhh-cccchhhhccccCCCCcEEEec
Q 048274 137 QRDMTERG--HSLESIKASIEA-RKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 137 ~RD~~eRG--~s~E~V~~~i~~-r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+|... .| .+.++...+..+ -+++-+ +|+-.+-.+|++++.
T Consensus 278 ~RHl~-sGl~~t~~ea~er~d~ND~~N~~-~I~k~~i~~D~iv~~ 320 (323)
T KOG2702|consen 278 KRHLQ-SGLVTTIAEARERFDSNDLLNGR-DIDKHLIKVDNIVHI 320 (323)
T ss_pred HHhhc-ccccCCHHHHHhhcccccccchH-HHHhcccchHHHHHh
Confidence 99875 47 566676666653 455554 566667778887764
No 39
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.52 E-value=1e-14 Score=132.49 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=112.1
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC--C-chhhhhhccCCCCccccc--hhHHHHHHHHHhcCC
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL--D-RTGRKEKGVTALDPRANN--FDLMYEQVKAMKDGV 75 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~--d-r~~~~~~~~~~~~Pea~d--~d~L~~~L~~L~~G~ 75 (329)
|..+|||||++||||| ++++.|.+.++.||++|+..|. . ..+..+....+|+.+..+ -......|+..-...
T Consensus 1 ~~~iIglTG~igsGKS---tva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~ 77 (201)
T COG0237 1 MMLIIGLTGGIGSGKS---TVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFND 77 (201)
T ss_pred CceEEEEecCCCCCHH---HHHHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCC
Confidence 7789999999999999 6888887778999999999873 1 112222334455555442 223334454444443
Q ss_pred ceeccccccccCCCC-----CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 76 SVEKPIYNHVTGLLD-----PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~-----~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
+...-..+..+|... .......++++|+| +..|+.....+.+|..|+|++|++++++|-++|| +.|.|++
T Consensus 78 ~~~~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e-iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e~~ 152 (201)
T COG0237 78 PEARLKLEKILHPLIRAEIKVVIDGARSPYVVLE-IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEEDA 152 (201)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCceEEE-chHHHhccccccCCEEEEEECCHHHHHHHHHhcC----CCCHHHH
Confidence 322222222222100 00011112377777 4445544456669999999999999999999996 6788999
Q ss_pred HHHHhhcccchhhhccccCCCCcEEEecCCC
Q 048274 151 KASIEARKPDFDAYIDPQKQYADAVIEVLPT 181 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~ 181 (329)
..++..++|..++ +..||+|++|.-+
T Consensus 153 ~~~~~~Q~~~~ek-----~~~ad~vi~n~~~ 178 (201)
T COG0237 153 EARLASQRDLEEK-----LALADVVIDNDGS 178 (201)
T ss_pred HHHHHhcCCHHHH-----HhhcCChhhcCCC
Confidence 9999999999998 5999999998544
No 40
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.49 E-value=2.3e-14 Score=130.34 Aligned_cols=163 Identities=18% Similarity=0.091 Sum_probs=106.6
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC---CchhhhhhccCCCCccc----------cchhHHHHHH
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL---DRTGRKEKGVTALDPRA----------NNFDLMYEQV 68 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~---dr~~~~~~~~~~~~Pea----------~d~d~L~~~L 68 (329)
+.+|||+|++||||| ++++.|.+.++.+++.|...+. ............|+.+. +|...|.+.+
T Consensus 5 ~~~igitG~igsGKS---t~~~~l~~~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 5 PFLVGVTGGIGSGKS---TVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CEEEEEECCCCCCHH---HHHHHHHHCCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 458999999999999 6888887778999999987552 11211122122232222 4444444322
Q ss_pred H----HHhcCCceeccccccccCCCCCC-cc--cCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhccccc
Q 048274 69 K----AMKDGVSVEKPIYNHVTGLLDPP-EL--IKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMT 141 (329)
Q Consensus 69 ~----~L~~G~~i~~P~Yd~~tg~~~~~-~~--i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~ 141 (329)
. .++.-+.+.+|.-. ..+... .. ..+.+++|+|+...+ ...+...+|..++|++|++++++|.++|+
T Consensus 82 f~~~~~~~~l~~i~hp~i~---~~~~~~i~~~~~~~~~vvv~e~pLL~-e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~-- 155 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVF---AAFQRAVDRAARRGKRILVKEAAILF-ESGGDAGLDFIVVVAADTELRLERAVQRG-- 155 (208)
T ss_pred hCCHHHHHHHHHHHCHHHH---HHHHHHHHHHHhcCCCEEEEEeeeee-ecCchhcCCeEEEEECCHHHHHHHHHHcC--
Confidence 1 11111234445211 111111 01 123479999998655 46778889999999999999999999985
Q ss_pred ccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 142 ERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 142 eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
+.+.|++.+++..+++.... .+.||++|.|--
T Consensus 156 --~~s~e~~~~Ri~~q~~~~~~-----~~~ad~vI~N~g 187 (208)
T PRK14731 156 --MGSREEIRRRIAAQWPQEKL-----IERADYVIYNNG 187 (208)
T ss_pred --CCCHHHHHHHHHHcCChHHH-----HHhCCEEEECCC
Confidence 55889999999988887665 357999999854
No 41
>COG4240 Predicted kinase [General function prediction only]
Probab=99.48 E-value=9e-14 Score=127.44 Aligned_cols=172 Identities=18% Similarity=0.254 Sum_probs=123.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEccceecCC--chhhhhh----ccCCCCccccchhHHHHHHHHHh
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDYHSLD--RTGRKEK----GVTALDPRANNFDLMYEQVKAMK 72 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddyhr~d--r~~~~~~----~~~~~~Pea~d~d~L~~~L~~L~ 72 (329)
.|+||+|+.|||||| +..+.+.|.+ +++..+++||||+.. |-...+. ....--|.+.|.+++.++|.++.
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVLnai~ 130 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIA 130 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHHHHHh
Confidence 389999999999999 6667777653 479999999999973 2222222 11222578999999999999999
Q ss_pred cCC-ceecccccccc----CCC-CCCcccC-CCcEEEEEccccccchh--------------------------------
Q 048274 73 DGV-SVEKPIYNHVT----GLL-DPPELIK-PPKILVIEGLHPMYDAR-------------------------------- 113 (329)
Q Consensus 73 ~G~-~i~~P~Yd~~t----g~~-~~~~~i~-p~~vlIvEGl~~l~~~~-------------------------------- 113 (329)
+|+ ++-.|.||.+. |+. ++.+-+. +.+|+|+||++..+.|-
T Consensus 131 ~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~kLa~Y~ 210 (300)
T COG4240 131 RGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDKLAPYR 210 (300)
T ss_pred cCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHHHhhhhhhH
Confidence 975 46899999854 444 2233333 48999999999887541
Q ss_pred -hhccCCEEEEEEC-CHHHHHHHhhccccc-----ccCCchhhHHHHHhhcccchhhhccccCCCCcE
Q 048274 114 -VRELLDFSIYLDI-SNEVKFAWKIQRDMT-----ERGHSLESIKASIEARKPDFDAYIDPQKQYADA 174 (329)
Q Consensus 114 -lr~~~D~~IyVD~-~~evrl~rkI~RD~~-----eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADi 174 (329)
+-+.+|--|-+.+ +....++||.+...+ ..|.|.|+|.+..++.||.|+.|+.+..+++..
T Consensus 211 pL~~rIdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~efvn~ymrsl~lylq~ls~~~al 278 (300)
T COG4240 211 PLFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSEFVNAYMRSLELYLQRLSEWIAL 278 (300)
T ss_pred HHHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1122444455555 456778898877643 358999999999999999999998876554433
No 42
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.46 E-value=2.9e-14 Score=126.99 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=106.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCC-eEEEEccceecC---CchhhhhhccCCCCcc------ccchhHHHHHHH----
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDT-TTVICLDDYHSL---DRTGRKEKGVTALDPR------ANNFDLMYEQVK---- 69 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~-v~vI~~Ddyhr~---dr~~~~~~~~~~~~Pe------a~d~d~L~~~L~---- 69 (329)
+|||+|++||||| ++++.|.+.+ +.+|++|.+.+. ...+........|+++ ..|...|.+.+.
T Consensus 1 ~i~itG~~gsGKs---t~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKS---TVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHH---HHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 5899999999999 5667776654 999999999753 1222222223344433 344444444331
Q ss_pred HHhcCCceeccccccccCCCCCCcccC-CCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 70 AMKDGVSVEKPIYNHVTGLLDPPELIK-PPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 70 ~L~~G~~i~~P~Yd~~tg~~~~~~~i~-p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
.+..-+.+.+|..-...... -.... ...++|+|... ++...+...+|..+||+++++++++|.+.|| |.|.+
T Consensus 78 ~~~~le~ilhP~i~~~i~~~--i~~~~~~~~~vvi~~pl-l~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~ 150 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKL--LAQFQSKLAYVLLDVPL-LFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEE 150 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHH--HHHhhcCCCEEEEEchH-hhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 11111234445321111000 00111 12478888544 5445788999999999999999999999997 88999
Q ss_pred hHHHHHhhcccchhhhccccCCCCcEEEecCC
Q 048274 149 SIKASIEARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
++.+++.++++.+.+ +..||++|+|.-
T Consensus 151 ~~~~r~~~q~~~~~~-----~~~ad~vI~N~~ 177 (188)
T TIGR00152 151 EVQKRLASQMDIEER-----LARADDVIDNSA 177 (188)
T ss_pred HHHHHHHhcCCHHHH-----HHhCCEEEECCC
Confidence 999999999887765 688999999853
No 43
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.46 E-value=3.8e-13 Score=121.33 Aligned_cols=163 Identities=16% Similarity=0.262 Sum_probs=116.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc-----ccCCeEEEEccceecCCchh--hhhh-ccC----CC-CccccchhHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL-----ISDTTTVICLDDYHSLDRTG--RKEK-GVT----AL-DPRANNFDLMYEQV 68 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L-----~~~~v~vI~~Ddyhr~dr~~--~~~~-~~~----~~-~Pea~d~d~L~~~L 68 (329)
.+||++||.|||||| +-.+-..| ++..++.++.||||.....+ ..+. .-+ +- .|.+.|+.++.+.|
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~evL 111 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVEVL 111 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHHHH
Confidence 489999999999999 43333333 23379999999999874322 2222 112 22 67899999999999
Q ss_pred HHHhcCC----ceecccccccc----CCC---CCCcccCCCcEEEEEccccccchh------------------------
Q 048274 69 KAMKDGV----SVEKPIYNHVT----GLL---DPPELIKPPKILVIEGLHPMYDAR------------------------ 113 (329)
Q Consensus 69 ~~L~~G~----~i~~P~Yd~~t----g~~---~~~~~i~p~~vlIvEGl~~l~~~~------------------------ 113 (329)
.++.++. .+..|.||.+. |++ .+|..++|.+++|+||++..+.|-
T Consensus 112 na~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~VN~kL~~ 191 (282)
T KOG2878|consen 112 NALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEVVNKKLEA 191 (282)
T ss_pred HHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHHHhhHHHH
Confidence 9998753 57899999864 222 358888899999999999888541
Q ss_pred ----hhccCCEEEEEEC-CHHHHHHHhhccccc-----ccCCchhhHHHHHhhcccchhhhc
Q 048274 114 ----VRELLDFSIYLDI-SNEVKFAWKIQRDMT-----ERGHSLESIKASIEARKPDFDAYI 165 (329)
Q Consensus 114 ----lr~~~D~~IyVD~-~~evrl~rkI~RD~~-----eRG~s~E~V~~~i~~r~pd~~~yI 165 (329)
+...+|--|-+.+ +..--..||+|...+ ..|+|.|+|.+...+.||.|..|.
T Consensus 192 Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV~rYmP~Yk~YL 253 (282)
T KOG2878|consen 192 YYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFVSRYMPAYKAYL 253 (282)
T ss_pred HHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHHHhhhhHHHhhh
Confidence 1112333344444 445567788877643 359999999999999999999885
No 44
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.44 E-value=3.8e-14 Score=140.77 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=108.7
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC---CchhhhhhccCCCCc------cccchhHHHHHHHHHh
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL---DRTGRKEKGVTALDP------RANNFDLMYEQVKAMK 72 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~---dr~~~~~~~~~~~~P------ea~d~d~L~~~L~~L~ 72 (329)
=.+|||+|++||||| ++++.|...++.+|++|...+. .........+..|++ ..+|...|.+.+..-.
T Consensus 1 m~~IgltG~igsGKS---tv~~~L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~ 77 (395)
T PRK03333 1 MLRIGLTGGIGAGKS---TVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADD 77 (395)
T ss_pred CeEEEEECCCCCCHH---HHHHHHHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCH
Confidence 035999999999999 5777776668999999999763 122222222333333 3556666655432211
Q ss_pred c----CCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 73 D----GVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 73 ~----G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
+ -+.+.+|.-- ..+..+....+.+.++++++..++...+...+|.+|||++|.+++++|-+.| ||.+.+
T Consensus 78 ~~~~~le~i~hP~I~---~~i~~~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~~ 150 (395)
T PRK03333 78 EARAVLNGIVHPLVG---ARRAELIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQ----RGMAEA 150 (395)
T ss_pred HHHHHHHHhhhHHHH---HHHHHHHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhc----CCCCHH
Confidence 1 1234444211 1111111112334455567777777788899999999999999999886554 799999
Q ss_pred hHHHHHhhcccchhhhccccCCCCcEEEecCCC
Q 048274 149 SIKASIEARKPDFDAYIDPQKQYADAVIEVLPT 181 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~ 181 (329)
++..++..+++...+ ++.||++|+|.-+
T Consensus 151 ~a~~ri~~Q~~~e~k-----~~~AD~vIdN~~s 178 (395)
T PRK03333 151 DARARIAAQASDEQR-----RAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHHhcCChHHH-----HHhCCEEEECCCC
Confidence 999999888886665 7899999998655
No 45
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.34 E-value=5.7e-13 Score=119.96 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=117.7
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC--C-chhh-----hhhccCCCCcc-ccchhHHHHHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL--D-RTGR-----KEKGVTALDPR-ANNFDLMYEQVKAMKD 73 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~--d-r~~~-----~~~~~~~~~Pe-a~d~d~L~~~L~~L~~ 73 (329)
+|||++|++||||| ++++.|.+.+++||+.|...|. . ..+- .+-|-+.++|+ .+|.+.|.+.+..-..
T Consensus 2 ~iVGLTGgiatGKS---tVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~ 78 (225)
T KOG3220|consen 2 LIVGLTGGIATGKS---TVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPK 78 (225)
T ss_pred eEEEeecccccChH---HHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHH
Confidence 58999999999999 7999999889999999998763 1 1111 11233344443 5666666554422111
Q ss_pred ----CCceeccccccccCCCCC--CcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCch
Q 048274 74 ----GVSVEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSL 147 (329)
Q Consensus 74 ----G~~i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~ 147 (329)
-..|.+|..-... |.+ ...+....++|++-.++|. ..+.+++-.+|.|.||.+..++|.+.|| +.|.
T Consensus 79 ~r~~Ln~IthP~Ir~em--~ke~~~~~l~G~r~ivlDiPLLFE-~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd----~lse 151 (225)
T KOG3220|consen 79 KRQALNKITHPAIRKEM--FKEILKLLLRGYRVIVLDIPLLFE-AKLLKICHKTVVVTCDEELQLERLVERD----ELSE 151 (225)
T ss_pred HHHHHHhcccHHHHHHH--HHHHHHHHhcCCeEEEEechHHHH-HhHHhheeeEEEEEECcHHHHHHHHHhc----cccH
Confidence 1234444321100 111 1133568899999666554 4788999999999999999999999998 7899
Q ss_pred hhHHHHHhhcccchhhhccccCCCCcEEEecCCC
Q 048274 148 ESIKASIEARKPDFDAYIDPQKQYADAVIEVLPT 181 (329)
Q Consensus 148 E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~ 181 (329)
++...++.+|||...+ ++.||+||+|--+
T Consensus 152 ~dAe~Rl~sQmp~~~k-----~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 152 EDAENRLQSQMPLEKK-----CELADVVIDNNGS 180 (225)
T ss_pred HHHHHHHHhcCCHHHH-----HHhhheeecCCCC
Confidence 9999999999999998 7999999998544
No 46
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.24 E-value=1.9e-11 Score=103.03 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
||.|+|++|||||| |+.|+..+ +..+++.|............. ..+...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~~~~~~~~i~~e~~~~~~~~--------~~~~~~i~~~l~~~~~--------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GLPYLDTGGIRTEEVGKLASE--------VAAIPEVRKALDERQR--------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCceeccccCCHHHHHHHHHH--------hcccHhHHHHHHHHHH---------
Confidence 68999999999997 66666666 477888885432110001000 0011122222221111
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccc-cCCchhhHHHHHh-hcccc
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTE-RGHSLESIKASIE-ARKPD 160 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~e-RG~s~E~V~~~i~-~r~pd 160 (329)
.+...+-+|+||-.+.+. +.+.+|+.||++++++++.+|.++|+... +|.|++++.+.+. +..+.
T Consensus 61 -----------~~~~~~~~Vidg~~~~~~--~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~ 127 (147)
T cd02020 61 -----------ELAKKPGIVLEGRDIGTV--VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERD 127 (147)
T ss_pred -----------HHhhCCCEEEEeeeeeeE--EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 011123478888775442 34668999999999999999999988432 3779999999987 45788
Q ss_pred hhhhccccC-CCCcEEEec
Q 048274 161 FDAYIDPQK-QYADAVIEV 178 (329)
Q Consensus 161 ~~~yI~Pqk-~~ADiVI~~ 178 (329)
+..|+.|.. ..-|++|+.
T Consensus 128 ~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 128 STRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred hhcccccccCCCCcEEEeC
Confidence 889998886 445588864
No 47
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.15 E-value=7.3e-11 Score=120.55 Aligned_cols=170 Identities=15% Similarity=0.053 Sum_probs=111.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHh-----cCCc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMK-----DGVS 76 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~-----~G~~ 76 (329)
.+|+|+|++|||||| ++.+++.| +..++++|+|||.-.....+.++++.+++++ ..+.+++.... .+..
T Consensus 285 ~ii~i~G~sgsGKst~a~~la~~l---~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~ 359 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVAKKL---GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQR 359 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCce
Confidence 489999999999998 77788877 4899999999984111112234555444443 33334443332 2345
Q ss_pred eeccccccccCCCC-----------C------C-----cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHH
Q 048274 77 VEKPIYNHVTGLLD-----------P------P-----ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAW 134 (329)
Q Consensus 77 i~~P~Yd~~tg~~~-----------~------~-----~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~r 134 (329)
+..|.||....-.+ . + ..+....=+|+||=-... .+-...|++|||+++++++.+|
T Consensus 360 i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt--vV~P~AdlKIfL~As~evRa~R 437 (512)
T PRK13477 360 VWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT--HVFPDAELKIFLTASVEERARR 437 (512)
T ss_pred EEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee--EEcCCCCEEEEEECCHHHHHHH
Confidence 77888876543211 0 0 011112238999865443 2455679999999999999998
Q ss_pred hhcccccccCC---chhhHHHHHh-hcccchhhhccccCCC-CcEEEecCC
Q 048274 135 KIQRDMTERGH---SLESIKASIE-ARKPDFDAYIDPQKQY-ADAVIEVLP 180 (329)
Q Consensus 135 kI~RD~~eRG~---s~E~V~~~i~-~r~pd~~~yI~Pqk~~-ADiVI~~~p 180 (329)
+..+. ..||. +.|++.+.+. +..-|..+.+.|.... ++++|+...
T Consensus 438 R~~~l-~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~ 487 (512)
T PRK13477 438 RALDL-QAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDG 487 (512)
T ss_pred HHhhh-hhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCC
Confidence 87664 35776 4678888886 4467888888887665 678898643
No 48
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.09 E-value=6.6e-11 Score=97.02 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
+|+|+|++|||||| |+.|++.+ ++.+|++|+++.. ................+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISMDDLIRE--PGWIERDDDEREYIDADIDLLDDILEQLQN--------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEEHHHHCC--GTHCHGCTTCCHHHHHHHHHHHHHHHHHHE---------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEecceEEe--ccccccCcchhhHHHHHHHHHHHHHHhhhc---------
Confidence 69999999999997 66666666 6889999995431 111111000000012223344444444432
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccchh-hhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDAR-VRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~-lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
......+|+||.+. .... .....|..||++++.+.++.++++|..+.||++.+
T Consensus 67 ------------~~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~~ 120 (121)
T PF13207_consen 67 ------------KPDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDRG 120 (121)
T ss_dssp ------------TTT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSCC
T ss_pred ------------cCCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCCC
Confidence 23467899999654 2222 22345789999998887888888888887887654
No 49
>PRK01184 hypothetical protein; Provisional
Probab=99.05 E-value=4.1e-10 Score=99.50 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=88.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhc--CCce-ecc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKD--GVSV-EKP 80 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~--G~~i-~~P 80 (329)
+|+|+|++|||||| ++..+...++.++++||..+. .....++... .+.+.+....++. +..+ ..-
T Consensus 3 ~i~l~G~~GsGKsT---~a~~~~~~g~~~i~~~d~lr~---~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~ 70 (184)
T PRK01184 3 IIGVVGMPGSGKGE---FSKIAREMGIPVVVMGDVIRE---EVKKRGLEPT------DENIGKVAIDLRKELGMDAVAKR 70 (184)
T ss_pred EEEEECCCCCCHHH---HHHHHHHcCCcEEEhhHHHHH---HHHHcCCCCC------cHHHHHHHHHHHHHHChHHHHHH
Confidence 79999999999996 444444557889999887652 1111111110 0111221111111 1000 000
Q ss_pred ccccccCCCCCCcccCCCcEEEEEcccccc-chhhhccCC---EEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhh
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMY-DARVRELLD---FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEA 156 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~-~~~lr~~~D---~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~ 156 (329)
.+... .-.+..++|++|..... -..+++.++ ..|||+++++++.+|...|+....+.+.+++.+++.+
T Consensus 71 ~~~~i--------~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~ 142 (184)
T PRK01184 71 TVPKI--------REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDER 142 (184)
T ss_pred HHHHH--------HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Confidence 00000 00245789999985432 234556666 8999999999999998888644335677788888776
Q ss_pred cccchhhhccccCCCCcEEEecCC
Q 048274 157 RKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 157 r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
++|.- +.+..+.||++|+|.-
T Consensus 143 q~~~~---~~~~~~~ad~vI~N~~ 163 (184)
T PRK01184 143 ELSWG---IGEVIALADYMIVNDS 163 (184)
T ss_pred HhccC---HHHHHHhcCEEEeCCC
Confidence 64311 1122478999999744
No 50
>PRK06217 hypothetical protein; Validated
Probab=98.98 E-value=3.1e-09 Score=94.35 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceeccccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYN 83 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Yd 83 (329)
|.|+|++|||||| |+.|++.| ++.+|++|+++... .. ..+...... ...+...+..+..
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l---~~~~~~~D~~~~~~-~~-----~~~~~~~~~-~~~~~~~~~~~~~---------- 63 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL---DIPHLDTDDYFWLP-TD-----PPFTTKRPP-EERLRLLLEDLRP---------- 63 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCcEEEcCceeecc-CC-----CCccccCCH-HHHHHHHHHHHhc----------
Confidence 8999999999997 77777766 47799999998631 11 001001111 1112222222211
Q ss_pred cccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhccccc
Q 048274 84 HVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMT 141 (329)
Q Consensus 84 ~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~ 141 (329)
.+-.|+||.+..+.+.+...+|..||||+|.+++++|...|+..
T Consensus 64 --------------~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 64 --------------REGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred --------------CCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 12368889887654556778999999999999999999989764
No 51
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.94 E-value=9.8e-10 Score=95.07 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCC---CCccccchhHHHHHHHHHhcCCceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTA---LDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~---~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
+|+|+|++|||||| |+.+++.| +..+++.|++++.- ....+.+. ..+...+. .+...+....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i------- 67 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLKLISAGDIFREL---AAKMGLDLIEFLNYAEENP-EIDKKIDRRI------- 67 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCceecHHHHHHHH---HHHcCCCHHHHHHHHhcCc-HHHHHHHHHH-------
Confidence 79999999999997 66666665 57789998866421 01111100 00000000 0011111100
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhh
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEA 156 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~ 156 (329)
.......+.+|+||.++.+. +++..|++|||++|++++.+|..+|+ |.|.+++.+++..
T Consensus 68 ------------~~~~~~~~~~Vi~g~~~~~~--~~~~~d~~v~v~a~~~~r~~R~~~R~----~~s~~~a~~~~~~ 126 (171)
T TIGR02173 68 ------------HEIALKEKNVVLESRLAGWI--VREYADVKIWLKAPLEVRARRIAKRE----GKSLTVARSETIE 126 (171)
T ss_pred ------------HHHHhcCCCEEEEeccccee--ecCCcCEEEEEECCHHHHHHHHHHcc----CCCHHHHHHHHHH
Confidence 00111224567799765442 45678999999999999999988885 6788888887653
No 52
>PRK06762 hypothetical protein; Provisional
Probab=98.90 E-value=1.3e-08 Score=88.42 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=78.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
|..+|.|+|++|||||| |+.+++.+. .++.+++.|.+.+. .. .....|.....+.+.+.....
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~-~~~~~i~~D~~r~~----l~---~~~~~~~~~~~~~~~~~~~~~-------- 64 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRRD----ML---RVKDGPGNLSIDLIEQLVRYG-------- 64 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEecHHHHHHH----hc---cccCCCCCcCHHHHHHHHHHH--------
Confidence 88999999999999998 888888774 36888998887652 00 001123334444444332221
Q ss_pred cccccccCCCCCCcccCCCcEEEEEcccccc--c---hhhhccCC---EEEEEECCHHHHHHHhhcccccccCCchhhHH
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMY--D---ARVRELLD---FSIYLDISNEVKFAWKIQRDMTERGHSLESIK 151 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~--~---~~lr~~~D---~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~ 151 (329)
+....++|+++.+.-. . ..+.+..+ ..||+++|.+++++|..+|+. .++.+.+.+.
T Consensus 65 ---------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~ 128 (166)
T PRK06762 65 ---------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDDMR 128 (166)
T ss_pred ---------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHHHH
Confidence 1224567778775321 1 12333333 789999999999999988874 2345555566
Q ss_pred HHHhhcc
Q 048274 152 ASIEARK 158 (329)
Q Consensus 152 ~~i~~r~ 158 (329)
.++..+.
T Consensus 129 ~~~~~~~ 135 (166)
T PRK06762 129 RWWNPHD 135 (166)
T ss_pred HHHhhcC
Confidence 6665543
No 53
>PRK08118 topology modulation protein; Reviewed
Probab=98.86 E-value=6.7e-09 Score=91.46 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=70.5
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
|++ |.|+|++|||||| |+.|++.+ ++.++++|+.+.... .... + .+...+.+..+..
T Consensus 1 m~r-I~I~G~~GsGKSTlak~L~~~l---~~~~~~lD~l~~~~~-------w~~~-~----~~~~~~~~~~~~~------ 58 (167)
T PRK08118 1 MKK-IILIGSGGSGKSTLARQLGEKL---NIPVHHLDALFWKPN-------WEGV-P----KEEQITVQNELVK------ 58 (167)
T ss_pred CcE-EEEECCCCCCHHHHHHHHHHHh---CCCceecchhhcccC-------CcCC-C----HHHHHHHHHHHhc------
Confidence 555 7899999999997 66666665 577899998875211 0000 1 1122222222221
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
.+-.|+||.++-..+..-+.+|..||||+|.++++.|.++|-...+|.+.+
T Consensus 59 ------------------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~ 109 (167)
T PRK08118 59 ------------------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRP 109 (167)
T ss_pred ------------------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCC
Confidence 112688998774323334569999999999999999999998766776553
No 54
>PRK04182 cytidylate kinase; Provisional
Probab=98.83 E-value=7e-09 Score=90.34 Aligned_cols=146 Identities=17% Similarity=0.214 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
+|+|+|.+|||||| |+.|++.| +..++++|++++.-. ...+.+ ...+. .... ..|.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g~~~id~~~~~~~~~---~~~g~~--------~~~~~----~~~~----~~~~~ 59 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---GLKHVSAGEIFRELA---KERGMS--------LEEFN----KYAE----EDPEI 59 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEecHHHHHHHHH---HHcCCC--------HHHHH----HHhh----cCchH
Confidence 79999999999997 77777766 467888877655210 000110 00000 0000 00000
Q ss_pred ccccCCCCCCcccC-CCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhcc-c-
Q 048274 83 NHVTGLLDPPELIK-PPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARK-P- 159 (329)
Q Consensus 83 d~~tg~~~~~~~i~-p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~-p- 159 (329)
+..... ....+. ....+|++|..+.+. +++..+++|||++|++++.+|...|+ +.+.++..+.+..+. +
T Consensus 60 ~~~~~~--~~~~~~~~~~~~Vi~g~~~~~~--~~~~~~~~V~l~a~~e~~~~Rl~~r~----~~~~~~a~~~~~~~d~~~ 131 (180)
T PRK04182 60 DKEIDR--RQLEIAEKEDNVVLEGRLAGWM--AKDYADLKIWLKAPLEVRAERIAERE----GISVEEALEETIEREESE 131 (180)
T ss_pred HHHHHH--HHHHHHhcCCCEEEEEeecceE--ecCCCCEEEEEECCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHH
Confidence 000000 000111 123356677544321 23447999999999999999987774 456665555443221 1
Q ss_pred --chhhhc---cccCCCCcEEEecC
Q 048274 160 --DFDAYI---DPQKQYADAVIEVL 179 (329)
Q Consensus 160 --d~~~yI---~Pqk~~ADiVI~~~ 179 (329)
.|..+. .|..+.||++|++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~d~~idt~ 156 (180)
T PRK04182 132 AKRYKEYYGIDIDDLSIYDLVINTS 156 (180)
T ss_pred HHHHHHHhCCCccccccccEEEECC
Confidence 122221 23336899999953
No 55
>PRK07261 topology modulation protein; Provisional
Probab=98.76 E-value=2e-08 Score=88.65 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=73.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceeccccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYN 83 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Yd 83 (329)
|+|.|++|||||| |+.|++.+ ++.+++.|+++.... +. .-+.+.+.+.+..+..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~---~~~~i~~D~~~~~~~---------~~---~~~~~~~~~~~~~~~~---------- 57 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY---NCPVLHLDTLHFQPN---------WQ---ERDDDDMIADISNFLL---------- 57 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCeEecCCEEeccc---------cc---cCCHHHHHHHHHHHHh----------
Confidence 8999999999997 55555554 467899999875211 00 1122333333332221
Q ss_pred cccCCCCCCcccCCCcEEEEEccccccc-hhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHH
Q 048274 84 HVTGLLDPPELIKPPKILVIEGLHPMYD-ARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIK 151 (329)
Q Consensus 84 ~~tg~~~~~~~i~p~~vlIvEGl~~l~~-~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~ 151 (329)
... .|+||.+.-.. +..-+.+|..||+|+|..+++.|.++|+...||.+.+++.
T Consensus 58 -------------~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~ 112 (171)
T PRK07261 58 -------------KHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMA 112 (171)
T ss_pred -------------CCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCcccc
Confidence 123 78899986521 3344578999999999999999999999988888776543
No 56
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.72 E-value=2e-08 Score=75.79 Aligned_cols=59 Identities=29% Similarity=0.523 Sum_probs=48.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
+|+|+|++|||||| ++.+++.|...++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 58999999999998 777777773334555543
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccch---hhhccCCEEEEEEC
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDA---RVRELLDFSIYLDI 126 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~---~lr~~~D~~IyVD~ 126 (329)
++|+||.++...+ .+++..|++||+|+
T Consensus 34 -----------------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -----------------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -----------------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 9999999999876 78999999999998
No 57
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.71 E-value=5.3e-08 Score=89.82 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=92.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhc--CCc-e
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKD--GVS-V 77 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~--G~~-i 77 (329)
..+|+|+|++|||||| |+.+++.| +...++.|++||.-.....+.|+... +.+.+.+.+..+.. +.. .
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~---~~~~~~~~~~~r~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL---GFHYLDTGAMYRAVALAALRHGVDLE-----DEEALVALAAHLDISFESDPG 75 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CCCcccCchhHHHHHHHHHHcCCCCC-----CHHHHHHHHhcCCeEEecCCC
Confidence 4589999999999997 66666666 47789999998741111112222211 12222222222111 000 0
Q ss_pred -ecccccc-c-cC------------CCCCC-----------cccCCCcEEEEEccc-cccchhhhccCCEEEEEECCHHH
Q 048274 78 -EKPIYNH-V-TG------------LLDPP-----------ELIKPPKILVIEGLH-PMYDARVRELLDFSIYLDISNEV 130 (329)
Q Consensus 78 -~~P~Yd~-~-tg------------~~~~~-----------~~i~p~~vlIvEGl~-~l~~~~lr~~~D~~IyVD~~~ev 130 (329)
....++. . +. .+... ..+...+-+|+||-- +-+ +....+++|||+++.++
T Consensus 76 ~~~~~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~---vl~~a~~~ifl~a~~e~ 152 (225)
T PRK00023 76 GQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTV---VFPDAELKIFLTASAEE 152 (225)
T ss_pred cceEEECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheE---EeCCCCEEEEEECCHHH
Confidence 0000000 0 00 00000 011223358888875 322 33448999999999999
Q ss_pred HHHHhhcccccc-cCCchhhHHHHHhh-cccchhhhccccCCCCc-EEEecCC
Q 048274 131 KFAWKIQRDMTE-RGHSLESIKASIEA-RKPDFDAYIDPQKQYAD-AVIEVLP 180 (329)
Q Consensus 131 rl~rkI~RD~~e-RG~s~E~V~~~i~~-r~pd~~~yI~Pqk~~AD-iVI~~~p 180 (329)
|..|+..+.... ++-+.+++.+.+.. -.-+...++.|.+..+| ++|++..
T Consensus 153 R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~ 205 (225)
T PRK00023 153 RAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSG 205 (225)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCC
Confidence 988877664321 24567778887763 33344557888778887 8888654
No 58
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.69 E-value=1.5e-07 Score=86.44 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=51.5
Q ss_pred EEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccc-cCCchhhHHHHHhhc-ccchhhhccccCCCCc-EEE
Q 048274 100 ILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTE-RGHSLESIKASIEAR-KPDFDAYIDPQKQYAD-AVI 176 (329)
Q Consensus 100 vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~e-RG~s~E~V~~~i~~r-~pd~~~yI~Pqk~~AD-iVI 176 (329)
=+|+||-.... - +....|+++|+++++++|..|+..|+... ...+.+++.+.|..| .-|..+++.|.....| ++|
T Consensus 122 ~~Vi~Gr~~~~-~-v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~I 199 (217)
T TIGR00017 122 GIIADGRDIGT-V-VFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYL 199 (217)
T ss_pred CEEEEEcCcce-E-EeCCCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEE
Confidence 38889886221 1 44448999999999999999998886532 134668999988643 5555556666443333 445
Q ss_pred ec
Q 048274 177 EV 178 (329)
Q Consensus 177 ~~ 178 (329)
+.
T Consensus 200 dt 201 (217)
T TIGR00017 200 DT 201 (217)
T ss_pred EC
Confidence 54
No 59
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.66 E-value=6.2e-08 Score=85.08 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=85.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
+|.|+|++|||||| |..||+.++ ..+|+.=.++|.--++ .|++ + +.|..+.+ +.|..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e---~gms--------l----~ef~~~AE----~~p~i 59 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARE---RGMS--------L----EEFSRYAE----EDPEI 59 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHH---cCCC--------H----HHHHHHHh----cCchh
Confidence 68999999999998 777777774 6678877777631111 1211 0 11111111 11211
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hcccc-
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-ARKPD- 160 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r~pd- 160 (329)
|....+.. . .+...+=+|+||=++..- +++..|++||+.+|.++|.+|-.+|+ |-+.+++++.+. +-+-+
T Consensus 60 D~~iD~rq-~-e~a~~~nvVlegrLA~Wi--~k~~adlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~ 131 (179)
T COG1102 60 DKEIDRRQ-K-ELAKEGNVVLEGRLAGWI--VREYADLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEK 131 (179)
T ss_pred hHHHHHHH-H-HHHHcCCeEEhhhhHHHH--hccccceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHH
Confidence 11111000 0 000123378888877762 45688999999999999999988886 788888887664 22233
Q ss_pred --hhhh--ccc-cCCCCcEEEec
Q 048274 161 --FDAY--IDP-QKQYADAVIEV 178 (329)
Q Consensus 161 --~~~y--I~P-qk~~ADiVI~~ 178 (329)
|.++ |+. -.+-.|+||+.
T Consensus 132 kRY~~~YgIDidDlSiyDLVinT 154 (179)
T COG1102 132 KRYKKIYGIDIDDLSIYDLVINT 154 (179)
T ss_pred HHHHHHhCCCCccceeeEEEEec
Confidence 3333 222 24667777775
No 60
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.65 E-value=5.8e-08 Score=85.25 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
.+|.+.|++|||||| ++.+++.|... ++.++..|++... ....+.+. +...+......++.....
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~----~~~~~~~~--~~~~~~~~~~~~l~~~l~------ 75 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI----LGHYGYDK--QSRIEMALKRAKLAKFLA------ 75 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh----cCCCCCCH--HHHHHHHHHHHHHHHHHH------
Confidence 389999999999999 88888888643 5777777776431 11111111 111111112222222111
Q ss_pred cccccccCCCCCCcccCCCcEEEEEcccccc--chhhhccC--CEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMY--DARVRELL--DFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE 155 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~--~~~lr~~~--D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~ 155 (329)
....+||+.|..... .+..+... ++.+|+++++++..+|. .|... ++.+.+++.+.+.
T Consensus 76 ----------------~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~-~~~l~-~~~~~~~~~~~~~ 137 (176)
T PRK05541 76 ----------------DQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRD-QKGLY-TKALKGEIKNVVG 137 (176)
T ss_pred ----------------hCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhc-hhhHH-HHHHcCccccccc
Confidence 113456666654331 11111111 47899999999888763 23211 2334566777788
Q ss_pred hcccchhhhccccCCCCcEEEecC
Q 048274 156 ARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 156 ~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.|+|.|+. .||++|++-
T Consensus 138 ~~~~~~~~-------~Ad~vI~~~ 154 (176)
T PRK05541 138 VDIPFDEP-------KADLVIDNS 154 (176)
T ss_pred CCCcccCC-------CCCEEEeCC
Confidence 89999974 389999984
No 61
>PRK00625 shikimate kinase; Provisional
Probab=98.55 E-value=1.4e-07 Score=83.87 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhh-----hhccCCCCccccchhHHHH-HHHHHhcCCc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRK-----EKGVTALDPRANNFDLMYE-QVKAMKDGVS 76 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~-----~~~~~~~~Pea~d~d~L~~-~L~~L~~G~~ 76 (329)
.|.|+|.+|||||| ++.+|+.| +..+|++|++-.. +..+. ...+...+.+. |..++. .+..+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~id~D~~I~~-~~g~~~~~~i~eif~~~Ge~~--fr~~E~~~l~~l~~--- 72 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPFFDTDDLIVS-NYHGALYSSPKEIYQAYGEEG--FCREEFLALTSLPV--- 72 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEhhHHHHH-HhCCCCCCCHHHHHHHHCHHH--HHHHHHHHHHHhcc---
Confidence 37899999999997 66677766 4788999987542 11110 00000011111 111111 1222211
Q ss_pred eeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccC---CEEEEEECCHHHHHHHhhcccccccCCchhhHHHH
Q 048274 77 VEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS 153 (329)
Q Consensus 77 i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~ 153 (329)
...||...|.-... +...+.+ ...||+++++++..+|-..|+...+..+.+++.+.
T Consensus 73 --------------------~~~VIs~GGg~~~~-~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~l 131 (173)
T PRK00625 73 --------------------IPSIVALGGGTLMI-EPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEI 131 (173)
T ss_pred --------------------CCeEEECCCCccCC-HHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHH
Confidence 11122233222222 3333222 67899999999999887677654433345667777
Q ss_pred HhhcccchhhhccccCCCCcEEEec
Q 048274 154 IEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 154 i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
++.|.|.|++ .||++|+.
T Consensus 132 l~~R~~~Y~~-------~ad~~i~~ 149 (173)
T PRK00625 132 LSQRIDRMRS-------IADYIFSL 149 (173)
T ss_pred HHHHHHHHHH-------HCCEEEeC
Confidence 7889999974 79999975
No 62
>PRK08356 hypothetical protein; Provisional
Probab=98.51 E-value=5e-07 Score=81.04 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=81.9
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC-CchhhhhhccCCCCcccc----chhHHHHH--HHHHhcCC
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL-DRTGRKEKGVTALDPRAN----NFDLMYEQ--VKAMKDGV 75 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~-dr~~~~~~~~~~~~Pea~----d~d~L~~~--L~~L~~G~ 75 (329)
.+|+|+|++|||||| +|+.|...++.+|++.+..+. -+.+.. ...+.....+ ..+.+.+. +..-.-|.
T Consensus 6 ~~i~~~G~~gsGK~t---~a~~l~~~g~~~is~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~ 80 (195)
T PRK08356 6 MIVGVVGKIAAGKTT---VAKFFEEKGFCRVSCSDPLIDLLTHNVS--DYSWVPEVPFKGEPTRENLIELGRYLKEKYGE 80 (195)
T ss_pred EEEEEECCCCCCHHH---HHHHHHHCCCcEEeCCCccccccccccc--ccccccHHHHhhccccccHHHHHHHHHHhcCc
Confidence 479999999999996 444443446778998887653 122111 1111111111 11111111 11111122
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccc-hhhhccCCEEEEEECCHHHHHHHhhccccccc--CCchhhHHH
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD-ARVRELLDFSIYLDISNEVKFAWKIQRDMTER--GHSLESIKA 152 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~-~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eR--G~s~E~V~~ 152 (329)
.+... .. ...+.....++++|+-.... ..+.......|||+++++++.+|-..|+...+ ..+.|++.+
T Consensus 81 ~~~~~---~~------~~~~~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~ 151 (195)
T PRK08356 81 DILIR---LA------VDKKRNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLK 151 (195)
T ss_pred HHHHH---HH------HHHhccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHH
Confidence 11000 00 00111123589999865532 12344446899999999998888767764321 125566655
Q ss_pred HHhhcccchhhhccccCCCCcEEEec
Q 048274 153 SIEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 153 ~i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
.+..++..|... -..+.||++|.|
T Consensus 152 ~~~~~~~l~~~~--~~~~~aD~vI~N 175 (195)
T PRK08356 152 FDEWEEKLYHTT--KLKDKADFVIVN 175 (195)
T ss_pred HHHHHHHhhhhh--hHHHhCcEEEEC
Confidence 555554433211 013689999987
No 63
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.49 E-value=2.9e-08 Score=81.21 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=56.6
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceeccccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIYN 83 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Yd 83 (329)
|+|+|.+|||||| |+.|++.+. .+..|.+....-............-..++.+.....+..+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-----DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-----HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH-------
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-----cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc-------
Confidence 7899999999997 666776660 111122221100000000011112234444444444444433111
Q ss_pred cccCCCCCCcccCCCcEEEEEccccccchhhhccCCEE-EEEECCHHHHHHHhhccc
Q 048274 84 HVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFS-IYLDISNEVKFAWKIQRD 139 (329)
Q Consensus 84 ~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~-IyVD~~~evrl~rkI~RD 139 (329)
.......+|++|...... .....+.. |||+++++++++|...|.
T Consensus 69 ----------~~~~~~~~iid~~~~~~~--~~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE--LERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC--ETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred ----------ccccCCcEEEecccchhc--ccccceeeEEEEECCHHHHHHHHHhCC
Confidence 123355678888876652 23333334 999999999999988764
No 64
>PRK04040 adenylate kinase; Provisional
Probab=98.49 E-value=1.4e-06 Score=78.36 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=31.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|-.+|+|+|.+|||||| ++.+++.|. .+..+++.++|++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~ 40 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVML 40 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHH
Confidence 44689999999999998 777777774 2577899999875
No 65
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.42 E-value=1.7e-06 Score=79.24 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=56.4
Q ss_pred cEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCc--hhhHHHHHh-hcccchhhhccccCCCCcEE
Q 048274 99 KILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHS--LESIKASIE-ARKPDFDAYIDPQKQYADAV 175 (329)
Q Consensus 99 ~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s--~E~V~~~i~-~r~pd~~~yI~Pqk~~ADiV 175 (329)
+=+|+||==..- .+-...++|||+++++++|-+||.+-.. .+|-+ .|++++.|. +-..|..+-+.|.+.-.|.+
T Consensus 121 ~~~V~dGRDiGT--vV~PdA~lKiFLtAS~e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~ 197 (222)
T COG0283 121 PGIVADGRDIGT--VVFPDAELKIFLTASPEERAERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDAL 197 (222)
T ss_pred CCEEEecCCCcc--eECCCCCeEEEEeCCHHHHHHHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeE
Confidence 447888744332 2567789999999999999999887544 46655 489999886 55778888889988877765
Q ss_pred E
Q 048274 176 I 176 (329)
Q Consensus 176 I 176 (329)
+
T Consensus 198 ~ 198 (222)
T COG0283 198 L 198 (222)
T ss_pred E
Confidence 4
No 66
>PRK13949 shikimate kinase; Provisional
Probab=98.42 E-value=7.6e-07 Score=78.56 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|++ |.|.|++|||||| ++.||+.+. ...+++|++..
T Consensus 1 m~~-I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~ 37 (169)
T PRK13949 1 MAR-IFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIE 37 (169)
T ss_pred CcE-EEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHH
Confidence 554 8899999999997 677777774 77899998754
No 67
>PRK14528 adenylate kinase; Provisional
Probab=98.41 E-value=6.3e-07 Score=80.10 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=73.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHh-cCCcee
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMK-DGVSVE 78 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~-~G~~i~ 78 (329)
|++ |.|+|++|||||| |+.+++.+ ++.+|++|+..+..-... ..+...+..+. .|+.+.
T Consensus 1 ~~~-i~i~G~pGsGKtt~a~~la~~~---~~~~is~~~~lr~~~~~~---------------~~~g~~~~~~~~~g~lvp 61 (186)
T PRK14528 1 MKN-IIFMGPPGAGKGTQAKILCERL---SIPQISTGDILREAVKNQ---------------TAMGIEAKRYMDAGDLVP 61 (186)
T ss_pred CcE-EEEECCCCCCHHHHHHHHHHHh---CCCeeeCCHHHHHHhhcC---------------CHHHHHHHHHHhCCCccC
Confidence 555 7889999999997 66666666 578899999876310000 00111111111 122110
Q ss_pred cccc-ccccCCCCCCcccCCCcEEEEEccccccc------hhhh---ccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 79 KPIY-NHVTGLLDPPELIKPPKILVIEGLHPMYD------ARVR---ELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 79 ~P~Y-d~~tg~~~~~~~i~p~~vlIvEGl~~l~~------~~lr---~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
-... ......+. ......-+|++|..--.. +.+. ...|+.|++++++++.++|...|-.. +|++.+
T Consensus 62 ~~~~~~~~~~~l~---~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-~gr~dd 137 (186)
T PRK14528 62 DSVVIGIIKDRIR---EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-EGRADD 137 (186)
T ss_pred HHHHHHHHHHHHh---CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-cCCCCC
Confidence 0000 00000000 011234588898532110 1111 35899999999999999998887432 455432
Q ss_pred hHHHHHhhcccchhhhccc
Q 048274 149 SIKASIEARKPDFDAYIDP 167 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~P 167 (329)
-.+.+.+|+-.|.....|
T Consensus 138 -~~e~i~~Rl~~y~~~~~p 155 (186)
T PRK14528 138 -NEATIKNRLDNYNKKTLP 155 (186)
T ss_pred -CHHHHHHHHHHHHHHhHH
Confidence 122344444555544444
No 68
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.39 E-value=1.1e-06 Score=74.58 Aligned_cols=137 Identities=16% Similarity=0.156 Sum_probs=74.1
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC-chhhhhhccCCCCccccchhHHH-HHHHHHhcCCceeccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD-RTGRKEKGVTALDPRANNFDLMY-EQVKAMKDGVSVEKPI 81 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d-r~~~~~~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i~~P~ 81 (329)
|.|+|++|||||| |+.+++.| +...++.|++.... .....+ .+..++.+. +..++ +.+..+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~--~~~~e~~~~~~~~~-------- 67 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLPFVDLDELIEQRAGMSIPE-IFAEEGEEG--FRELEREVLLLLLT-------- 67 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEEchHHHHHHcCCCHHH-HHHHHCHHH--HHHHHHHHHHHHhc--------
Confidence 7899999999997 66677666 56789999886521 001100 001111111 11111 12222221
Q ss_pred cccccCCCCCCcccCCCcEEEEEccccccch---hhhccCCEEEEEECCHHHHHHHhhcccccccCC-c---hhhHHHHH
Q 048274 82 YNHVTGLLDPPELIKPPKILVIEGLHPMYDA---RVRELLDFSIYLDISNEVKFAWKIQRDMTERGH-S---LESIKASI 154 (329)
Q Consensus 82 Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~---~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~-s---~E~V~~~i 154 (329)
...+||.-|.-...++ .....-.+.|||++|++++.+|...|+. |.. + .+.+.+.+
T Consensus 68 ---------------~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~--r~~~~~~~~~~~~~~~ 130 (154)
T cd00464 68 ---------------KENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKT--RPLLQDEDPERLRELL 130 (154)
T ss_pred ---------------cCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCC--CCCCCCCCHHHHHHHH
Confidence 1223333232111122 1112356899999999999888666642 222 1 13566677
Q ss_pred hhcccchhhhccccCCCCcEEEecC
Q 048274 155 EARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 155 ~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.+.+.|. +.||++|+.-
T Consensus 131 ~~r~~~Y~-------~~ad~~i~~~ 148 (154)
T cd00464 131 EEREPLYR-------EVADLTIDTD 148 (154)
T ss_pred HHHHHHHH-------HhCcEEEECC
Confidence 77777775 4599999863
No 69
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.36 E-value=1e-06 Score=75.98 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
..|.|+|++|||||| |..||+.| ++.+++.|++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l---~~~~~d~d~~~~ 40 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL---GYDFIDTDHLIE 40 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEChHHHH
Confidence 479999999999998 77777777 467889998764
No 70
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.35 E-value=2.4e-06 Score=91.16 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceec---
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK--- 79 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~--- 79 (329)
+|+|+|++|||||| |+.||+.|+ ...+++..+|+.-.-...+.+.+ +.-...|.+.+...+..+..+-.+..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMYRACAWWCLKQGID-LDAELVDEQVVTEAVGEFFTGLHFDISVD 78 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEeHHHHHHHHhcCCC-cchhhhhhhhhHHHHHHHHhCCcEEEecC
Confidence 69999999999998 777777774 77899999997411010111211 11112333455555544433211111
Q ss_pred ccc-----ccc--c-----C----------C-------CCCC-ccc--CCC--------cEEEEEccccccchhhhccCC
Q 048274 80 PIY-----NHV--T-----G----------L-------LDPP-ELI--KPP--------KILVIEGLHPMYDARVRELLD 119 (329)
Q Consensus 80 P~Y-----d~~--t-----g----------~-------~~~~-~~i--~p~--------~vlIvEGl~~l~~~~lr~~~D 119 (329)
|.. |-. + . . .... ..+ ... .=+|+||=-... .+-...|
T Consensus 79 ~~~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigt--vv~p~a~ 156 (712)
T PRK09518 79 PDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITT--VVAPDAE 156 (712)
T ss_pred CCCcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccce--EEecCCC
Confidence 000 000 0 0 0 0000 011 111 138889866554 2567789
Q ss_pred EEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hcccchhhhccccCCCCc--EEEecCCC
Q 048274 120 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-ARKPDFDAYIDPQKQYAD--AVIEVLPT 181 (329)
Q Consensus 120 ~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r~pd~~~yI~Pqk~~AD--iVI~~~p~ 181 (329)
+++|+++++++|.+||..++.. -+.+++++.+. +-.-|. +.+.|. ..|| ++|++...
T Consensus 157 ~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl-~~~~da~~idts~~ 216 (712)
T PRK09518 157 VRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFL-SAADGVTTLDNSDL 216 (712)
T ss_pred eEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCC-CCCCCeEEEECCCC
Confidence 9999999999999999998753 78899999886 557788 899996 6666 78887655
No 71
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.33 E-value=1.8e-06 Score=77.40 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeE-EEEccceecCCchhhhh--hccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTT-VICLDDYHSLDRTGRKE--KGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~-vI~~Ddyhr~dr~~~~~--~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
++|.|+||+||||| +|++.|.+.... .... -| ..|+++.- .|.+++ |-.-++.-..+..|+=+++
T Consensus 5 ~~ivl~GpsG~GK~---tl~~~l~~~~~~~~~~v--~~-TTR~~r~gE~~G~dY~------fvs~~~F~~~i~~~~f~e~ 72 (186)
T PRK14737 5 KLFIISSVAGGGKS---TIIQALLEEHPDFLFSI--SC-TTRAPRPGDEEGKTYF------FLTIEEFKKGIADGEFLEW 72 (186)
T ss_pred eEEEEECCCCCCHH---HHHHHHHhcCCcccccc--Cc-cCCCCCCCCCCCceeE------eCCHHHHHHHHHcCCeEEE
Confidence 57999999999999 555555432110 1111 11 13443321 122221 1111222333445666665
Q ss_pred cccc-cccCCCCCC--cccCCCcEEEEEccccccchhhhccCC---EEEEEECC-HHHHHHHhhcccccccCCchhhHHH
Q 048274 80 PIYN-HVTGLLDPP--ELIKPPKILVIEGLHPMYDARVRELLD---FSIYLDIS-NEVKFAWKIQRDMTERGHSLESIKA 152 (329)
Q Consensus 80 P~Yd-~~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~lr~~~D---~~IyVD~~-~evrl~rkI~RD~~eRG~s~E~V~~ 152 (329)
-.|+ +.-|+..+. ..+....++|++.-.-.. ..++..+. +.||+.+| .++..+|..+|+ +.+.+++.+
T Consensus 73 ~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~----~~s~e~i~~ 147 (186)
T PRK14737 73 AEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRG----TDSEESIEK 147 (186)
T ss_pred EEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcC----CCCHHHHHH
Confidence 5443 223332221 123456677777322222 23444443 78999985 677777777663 347788888
Q ss_pred HHhhcccchhhhccccCCCCcEEEecC
Q 048274 153 SIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 153 ~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
++.++++.... ...+|.||.|.
T Consensus 148 Rl~~~~~e~~~-----~~~~D~vI~N~ 169 (186)
T PRK14737 148 RIENGIIELDE-----ANEFDYKIIND 169 (186)
T ss_pred HHHHHHHHHhh-----hccCCEEEECc
Confidence 89877655442 57899999986
No 72
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.32 E-value=1.6e-06 Score=91.64 Aligned_cols=166 Identities=13% Similarity=0.123 Sum_probs=98.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhc--------
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKD-------- 73 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~-------- 73 (329)
.+|.|.|++|||||| |+.||+.|+ ..++++|++|+.---...+.+++ -.|.+.+.+.+..+..
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 514 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLTALAALRAGVA-----LDDEAAIAALARGLPVRFEGDRIW 514 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHHHHHHHHcCcC-----CCCHHHHHHHHhcCCeeecCCeEE
Confidence 379999999999998 777887774 66799999998411111112222 1233444444333221
Q ss_pred --CCceeccccccccC----CC----------CCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhh
Q 048274 74 --GVSVEKPIYNHVTG----LL----------DPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKI 136 (329)
Q Consensus 74 --G~~i~~P~Yd~~tg----~~----------~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI 136 (329)
|+.+..-.-+...+ .+ ... ..+....=+|+||=-... .+....|+|||+++++++|-+||.
T Consensus 515 ~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigt--vv~p~a~~kifl~a~~~~Ra~Rr~ 592 (661)
T PRK11860 515 LGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGT--VIFPDAALKVFLTASAEARAERRY 592 (661)
T ss_pred ECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCcc--EECCCCCeEEEEECChhHHHHHHH
Confidence 11111000000000 00 000 011112237899865543 256678999999999999999988
Q ss_pred cccccccCC--chhhHHHHHh-hcccchhhhccccCCC-CcEEEecC
Q 048274 137 QRDMTERGH--SLESIKASIE-ARKPDFDAYIDPQKQY-ADAVIEVL 179 (329)
Q Consensus 137 ~RD~~eRG~--s~E~V~~~i~-~r~pd~~~yI~Pqk~~-ADiVI~~~ 179 (329)
+... ++|. +.+++++.+. +-.-|..+++.|.+.- -+++|++.
T Consensus 593 ~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts 638 (661)
T PRK11860 593 KQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNS 638 (661)
T ss_pred HHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECC
Confidence 6533 3454 7899999886 5678888889997654 34566654
No 73
>PRK14531 adenylate kinase; Provisional
Probab=98.30 E-value=1.4e-06 Score=77.37 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=32.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
||..|.|+|++|||||| |+.+|+.+ ++..|+++|..+.
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~---g~~~is~gd~lr~ 39 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAH---GLRHLSTGDLLRS 39 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCCeEecccHHHH
Confidence 88899999999999998 77777776 5778999888763
No 74
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.28 E-value=1.3e-06 Score=76.72 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
||.|+|++|||||| |+.|++.+ ++.+|+++|..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---GFTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---CCeEEECChHHH
Confidence 58999999999998 77777766 588999998876
No 75
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.22 E-value=2.8e-06 Score=75.04 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|+|++|||||| |+.|++.+ ++.+|++|+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~---~~~~i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY---GLPHISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCeEEECcHHHHH
Confidence 7899999999997 66666665 6889999998763
No 76
>PRK14530 adenylate kinase; Provisional
Probab=98.21 E-value=2.9e-06 Score=77.16 Aligned_cols=38 Identities=5% Similarity=-0.004 Sum_probs=31.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|...|.|.|++|||||| |+.|++.+ ++..|++|++.+.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~---~~~~i~~g~~lr~ 40 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEF---GVEHVTTGDALRA 40 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh---CCeEEeccHHHHH
Confidence 46689999999999998 77777777 4788999999874
No 77
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.20 E-value=5.7e-06 Score=73.06 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=72.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
..|.|.|++|||||| ++.+++.+ +..+++.|..... +....- ..+..++...+-. .=.+.+..+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l---~~~~vd~D~~i~~-~~g~~i~~~~~~~g~~~fr~-~e~~~l~~l~~~------ 73 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSDQEIEK-RTGADIGWVFDVEGEEGFRD-REEKVINELTEK------ 73 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc---CCcEEECCchHHH-HhCcCHhHHHHHhCHHHHHH-HHHHHHHHHHhC------
Confidence 369999999999997 66677666 4778999974321 111000 0011111111111 111223333210
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccchh---hhccCCEEEEEECCHHHHHHHhhccccccc----CCchhhHHHH
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDAR---VRELLDFSIYLDISNEVKFAWKIQRDMTER----GHSLESIKAS 153 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~---lr~~~D~~IyVD~~~evrl~rkI~RD~~eR----G~s~E~V~~~ 153 (329)
..++|.-|--....+. +-...+..|||+++.+++.+|-..+. .| +-+.++.+..
T Consensus 74 -----------------~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~--~rP~~~~~~~~~~~~~ 134 (172)
T PRK05057 74 -----------------QGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK--KRPLLQVDDPREVLEA 134 (172)
T ss_pred -----------------CCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC--CCCCCCCCCHHHHHHH
Confidence 1233322222222222 22245799999999999988743322 23 2222344444
Q ss_pred -HhhcccchhhhccccCCCCcEEEec
Q 048274 154 -IEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 154 -i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+..|.|.|. +.||++|+.
T Consensus 135 l~~~R~~~Y~-------~~Ad~~idt 153 (172)
T PRK05057 135 LANERNPLYE-------EIADVTIRT 153 (172)
T ss_pred HHHHHHHHHH-------hhCCEEEEC
Confidence 467888886 459999984
No 78
>PRK03839 putative kinase; Provisional
Probab=98.17 E-value=7.4e-06 Score=72.11 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=60.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCC-CccccchhHHHHHHHHHhcCCceeccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTAL-DPRANNFDLMYEQVKAMKDGVSVEKPI 81 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~-~Pea~d~d~L~~~L~~L~~G~~i~~P~ 81 (329)
.|.|+|++|||||| |+.||+.+ +..++++|++++... . ...+ ......++.++..+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~---~~~~id~d~~~~~~~--~----~~~~~~~~~~~~~~l~~~~~~~~~-------- 64 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL---GYEYVDLTEFALKKG--I----GEEKDDEMEIDFDKLAYFIEEEFK-------- 64 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEehhhhhhhcC--C----cccCChhhhcCHHHHHHHHHHhcc--------
Confidence 48899999999998 77777776 478899999985311 0 0011 1112334455544432111
Q ss_pred cccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcc
Q 048274 82 YNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 82 Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~R 138 (329)
.+-+|++|.+... . ..|+.||+++++++..+|...|
T Consensus 65 ----------------~~~vIidG~~~~l----~-~~~~vi~L~~~~~~~~~Rl~~R 100 (180)
T PRK03839 65 ----------------EKNVVLDGHLSHL----L-PVDYVIVLRAHPKIIKERLKER 100 (180)
T ss_pred ----------------CCCEEEEeccccc----c-CCCEEEEEECCHHHHHHHHHHc
Confidence 1114667754322 2 3699999999999988875544
No 79
>PRK13946 shikimate kinase; Provisional
Probab=98.14 E-value=6.2e-06 Score=73.37 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=72.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHH-HHHHHHHhcCCcee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLM-YEQVKAMKDGVSVE 78 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L-~~~L~~L~~G~~i~ 78 (329)
.+.|.++|.+|||||| ++.||+.| +..+++.|..... ..++.. ..+..++... +..+ .+.+..+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D~~~~~-~~g~~~~e~~~~~ge~~--~~~~e~~~l~~l~~----- 78 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML---GLPFLDADTEIER-AARMTIAEIFAAYGEPE--FRDLERRVIARLLK----- 78 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCeECcCHHHHH-HhCCCHHHHHHHHCHHH--HHHHHHHHHHHHHh-----
Confidence 3579999999999998 77777777 4667888864221 000000 0011111111 1111 112222221
Q ss_pred ccccccccCCCCCCcccCCCcEEEEEccccccchhhhc---cCCEEEEEECCHHHHHHHhhcccccc--cCCchhhHHHH
Q 048274 79 KPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRE---LLDFSIYLDISNEVKFAWKIQRDMTE--RGHSLESIKAS 153 (329)
Q Consensus 79 ~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~---~~D~~IyVD~~~evrl~rkI~RD~~e--RG~s~E~V~~~ 153 (329)
....||.-|--.+..+..++ ...+.||+++|+++..+|-.+|...- .+.+..+.++.
T Consensus 79 ------------------~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~ 140 (184)
T PRK13946 79 ------------------GGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLAR 140 (184)
T ss_pred ------------------cCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHH
Confidence 12345555443333333222 24789999999999999866664210 01233344444
Q ss_pred -HhhcccchhhhccccCCCCcEEEec
Q 048274 154 -IEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 154 -i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+..|.|.| ..+|++|+.
T Consensus 141 ~~~~R~~~y--------~~~dl~i~~ 158 (184)
T PRK13946 141 LMEERYPVY--------AEADLTVAS 158 (184)
T ss_pred HHHHHHHHH--------HhCCEEEEC
Confidence 34565644 237888863
No 80
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.13 E-value=1.1e-05 Score=70.79 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|+|.|++|||||| ++.+++.+ +...++++++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~~~g~~~~ 39 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY---GFTHLSTGDLLR 39 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCcEEeHHHHHH
Confidence 589999999999998 77777666 577899988765
No 81
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.12 E-value=7.2e-06 Score=71.44 Aligned_cols=139 Identities=12% Similarity=0.143 Sum_probs=74.6
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHH----HHHHHhcCC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYE----QVKAMKDGV 75 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~----~L~~L~~G~ 75 (329)
|...|.|+|.+|||||| |+.||+.| +..+++.|.+.... .++.-..+ .+.+.++.+.+ .+..+.
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~~l---g~~~~d~D~~~~~~-~g~~~~~~----~~~~g~~~~~~~e~~~~~~~~--- 69 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQAL---GYRFVDTDQWLQST-SNMTVAEI----VEREGWAGFRARESAALEAVT--- 69 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEccHHHHHH-hCCCHHHH----HHHHCHHHHHHHHHHHHHHhc---
Confidence 44568899999999998 77777776 46789999886421 11100000 01112222211 121111
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccchh---hhccCCEEEEEECCHHHHHHHhhcccc-cc----cCCch
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDAR---VRELLDFSIYLDISNEVKFAWKIQRDM-TE----RGHSL 147 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~---lr~~~D~~IyVD~~~evrl~rkI~RD~-~e----RG~s~ 147 (329)
...+||--|--....+. +-...++.+|+++++++.++|...|.. .. .|.+.
T Consensus 70 ---------------------~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~ 128 (171)
T PRK03731 70 ---------------------APSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPI 128 (171)
T ss_pred ---------------------CCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCCh
Confidence 11223333311111221 223367999999999999988655531 11 12232
Q ss_pred -hhHHHHHhhcccchhhhccccCCCCcEEEec
Q 048274 148 -ESIKASIEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 148 -E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+++.+.+.+|.+.|.+ .|+++|+.
T Consensus 129 ~~~~~~~~~~r~~~y~~-------~a~~~Id~ 153 (171)
T PRK03731 129 SEEVAEVLAEREALYRE-------VAHHIIDA 153 (171)
T ss_pred HHHHHHHHHHHHHHHHH-------hCCEEEcC
Confidence 4556667777777764 46788875
No 82
>PRK13947 shikimate kinase; Provisional
Probab=98.12 E-value=2e-05 Score=68.49 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|.. |.|.|.+|||||| |+.||+.| +...++.|.+..
T Consensus 1 m~~-I~l~G~~GsGKst~a~~La~~l---g~~~id~d~~~~ 37 (171)
T PRK13947 1 MKN-IVLIGFMGTGKTTVGKRVATTL---SFGFIDTDKEIE 37 (171)
T ss_pred CCe-EEEEcCCCCCHHHHHHHHHHHh---CCCEEECchhhh
Confidence 555 8899999999998 77788877 467899998754
No 83
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.08 E-value=3.8e-05 Score=67.34 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=42.1
Q ss_pred CCcEEEEEccccccchhhhccCC--EEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhcccchhhhccccCCCCcE
Q 048274 97 PPKILVIEGLHPMYDARVRELLD--FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADA 174 (329)
Q Consensus 97 p~~vlIvEGl~~l~~~~lr~~~D--~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADi 174 (329)
....+|++|--... +.++..+. ..||++++.++..+|-..|. +.+++++.+++. +.+.|.. ..||+
T Consensus 89 ~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~----~~~~~~~~~rl~-~~~~~~~------~~~~~ 156 (179)
T TIGR02322 89 AGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARG----RESREEIEERLA-RSARFAA------APADV 156 (179)
T ss_pred cCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHH-HHhhccc------ccCCE
Confidence 34567777764322 33444332 78999999999999866662 335566666664 3333321 45677
Q ss_pred E-Eec
Q 048274 175 V-IEV 178 (329)
Q Consensus 175 V-I~~ 178 (329)
+ +++
T Consensus 157 ~vi~~ 161 (179)
T TIGR02322 157 TTIDN 161 (179)
T ss_pred EEEeC
Confidence 6 444
No 84
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.07 E-value=1.4e-05 Score=70.04 Aligned_cols=72 Identities=22% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCcEEEEEccccccchhhhccC-C-EEEEEECC-HHHHHHHhhcccccccCC-chhhHHHHHhhcccchhhhccccCCCC
Q 048274 97 PPKILVIEGLHPMYDARVRELL-D-FSIYLDIS-NEVKFAWKIQRDMTERGH-SLESIKASIEARKPDFDAYIDPQKQYA 172 (329)
Q Consensus 97 p~~vlIvEGl~~l~~~~lr~~~-D-~~IyVD~~-~evrl~rkI~RD~~eRG~-s~E~V~~~i~~r~pd~~~yI~Pqk~~A 172 (329)
...++|++.-.... ..+.+.+ + +.||+.++ .++..+|... ||. +.+++.+++.+..+..+. .+.+
T Consensus 90 ~g~~vi~d~~~~~~-~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~-----r~~~~~~~i~~rl~~~~~~~~~-----~~~~ 158 (180)
T TIGR03263 90 AGKDVLLEIDVQGA-RQVKKKFPDAVSIFILPPSLEELERRLRK-----RGTDSEEVIERRLAKAKKEIAH-----ADEF 158 (180)
T ss_pred CCCeEEEECCHHHH-HHHHHhCCCcEEEEEECCCHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHhc-----cccC
Confidence 34566665433332 2344444 4 56777655 5555555443 454 455677778766544332 4569
Q ss_pred cEEEecC
Q 048274 173 DAVIEVL 179 (329)
Q Consensus 173 DiVI~~~ 179 (329)
|++|.|.
T Consensus 159 d~~i~n~ 165 (180)
T TIGR03263 159 DYVIVND 165 (180)
T ss_pred cEEEECC
Confidence 9999884
No 85
>PLN02200 adenylate kinase family protein
Probab=98.06 E-value=5.2e-06 Score=77.10 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCcee---
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVE--- 78 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~--- 78 (329)
.+|.|+|++|||||| |+.+++.+ ++..|+++|..+.. ... +.-+...+.+ .+..|+.+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~---g~~his~gdllR~~---i~~--------~s~~~~~i~~---~~~~G~~vp~e~ 106 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETF---GFKHLSAGDLLRRE---IAS--------NSEHGAMILN---TIKEGKIVPSEV 106 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh---CCeEEEccHHHHHH---Hhc--------cChhHHHHHH---HHHcCCCCcHHH
Confidence 589999999999998 77777766 47789998887631 100 0000011111 122233211
Q ss_pred -ccccccccCCCCCCcccCCCcEEEEEccccccc------hhhhccCCEEEEEECCHHHHHHHhhccc
Q 048274 79 -KPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD------ARVRELLDFSIYLDISNEVKFAWKIQRD 139 (329)
Q Consensus 79 -~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~------~~lr~~~D~~IyVD~~~evrl~rkI~RD 139 (329)
.+.+.. .+.. ....-+|++|..--.. ..+....|+.+|+++++++.++|...|.
T Consensus 107 ~~~~l~~---~l~~----~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 107 TVKLIQK---EMES----SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred HHHHHHH---HHhc----CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 111100 0000 0123478888542211 1112357899999999999999988774
No 86
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.05 E-value=2.4e-05 Score=69.54 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=68.9
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHH-HHHHHhcCCce-
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYE-QVKAMKDGVSV- 77 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~-~L~~L~~G~~i- 77 (329)
|..+|.|.|++|||||| ++.|+..+. ..++..|.+... ..+.. ...++ ....+ ..+.+..+.-.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~---~~~~~~~~~~~~--~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~ 67 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQ---TQLLVAHRYITR--PASAG-SENHI-------ALSEQEFFTRAGQNLFAL 67 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC---CeEEEcCEECCC--ccchh-HHhhe-------eEcHHHHHHHHHCCchhh
Confidence 67789999999999996 454544433 345566665432 11110 01111 11111 22223333211
Q ss_pred eccccccccCCCCCC-cccCCCcEEEEEccccccchhhhccC---CEEEEEECCHHHHHHHhhcccccccCCchhhHHHH
Q 048274 78 EKPIYNHVTGLLDPP-ELIKPPKILVIEGLHPMYDARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS 153 (329)
Q Consensus 78 ~~P~Yd~~tg~~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~ 153 (329)
.+-.++..-|+...- ..+.....+|+.|--... ..++..+ -..|||++|.++..+|..+|+ +.+.+++.++
T Consensus 68 ~~~~~g~~yg~~~~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~----~~~~~~i~~r 142 (186)
T PRK10078 68 SWHANGLYYGVGIEIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRG----RENASEINAR 142 (186)
T ss_pred HHHHhCCccCCcHHHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC----CCCHHHHHHH
Confidence 111111112222111 122233445667665433 2333333 346899999999988877774 3466777777
Q ss_pred Hhh
Q 048274 154 IEA 156 (329)
Q Consensus 154 i~~ 156 (329)
+.+
T Consensus 143 l~r 145 (186)
T PRK10078 143 LAR 145 (186)
T ss_pred HHH
Confidence 753
No 87
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.01 E-value=9.9e-06 Score=78.13 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=75.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
..|+|+|.+|||||| ++.|++.| +..+|++|..... ..++.. ..+..++.+.+. +.-.+.+..+....
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D~~i~~-~~G~~i~ei~~~~G~~~fr-~~e~~~l~~ll~~~----- 203 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL---GVPFVELNREIER-EAGLSVSEIFALYGQEGYR-RLERRALERLIAEH----- 203 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHHHHHHH-HhCCCHHHHHHHHCHHHHH-HHHHHHHHHHHhhC-----
Confidence 479999999999997 66677666 4667788865421 111100 001112222221 11112333332211
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhhcccccccCC-----chhhHH
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKIQRDMTERGH-----SLESIK 151 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~-----s~E~V~ 151 (329)
..+||..|--....+ .+.. --+.|||+++++++.+|-.+|+. .|.. ..+.+.
T Consensus 204 -----------------~~~VI~~Ggg~v~~~~~~~~l~~-~~~~V~L~a~~e~~~~Rl~~r~~-~rp~~~~~~~~e~i~ 264 (309)
T PRK08154 204 -----------------EEMVLATGGGIVSEPATFDLLLS-HCYTVWLKASPEEHMARVRAQGD-LRPMADNREAMEDLR 264 (309)
T ss_pred -----------------CCEEEECCCchhCCHHHHHHHHh-CCEEEEEECCHHHHHHHHhcCCC-CCCCCCCCChHHHHH
Confidence 123343433222221 1212 13699999999999998666642 1221 135566
Q ss_pred HHHhhcccchhhhccccCCCCcEEEecC
Q 048274 152 ASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 152 ~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.+..|+|.|. +||++|++.
T Consensus 265 ~~~~~R~~~y~--------~ad~~I~t~ 284 (309)
T PRK08154 265 RILASREPLYA--------RADAVVDTS 284 (309)
T ss_pred HHHHHHHHHHH--------hCCEEEECC
Confidence 66778888885 389999864
No 88
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.00 E-value=6e-05 Score=65.10 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|.|.|++|||||| |+.+++.+. ..+|+.|+|+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccC
Confidence 4689999999998 777777763 77899999975
No 89
>PRK13808 adenylate kinase; Provisional
Probab=97.98 E-value=1e-05 Score=78.91 Aligned_cols=34 Identities=6% Similarity=-0.019 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|+|++|||||| |..|++.+ ++..|+.||..+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y---gl~~is~gdlLR~ 37 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY---GIVQLSTGDMLRA 37 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceecccHHHHH
Confidence 6679999999998 77777766 5789999998864
No 90
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.95 E-value=4e-05 Score=72.65 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=32.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|+.+|-+.|++|||||| |+.+++.+. +...|+.|++..
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~--~~~~l~~D~~r~ 39 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP--KAVNVNRDDLRQ 39 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC--CCEEEeccHHHH
Confidence 78999999999999998 777777773 588999999864
No 91
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.93 E-value=8.3e-05 Score=63.24 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
+|.|+|++|||||| |+.+++.+ ++.+|+.|++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~~~~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---GAPFIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---CCEEEeCccccc
Confidence 57899999999997 66666554 578899999875
No 92
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.92 E-value=2.4e-05 Score=68.61 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|.|+|.+|||||| ++.++..|... .+.+|..|.+.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 489999999999999 88888888644 47788888763
No 93
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.91 E-value=2.1e-05 Score=71.46 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|.|.|++|||||| |+.||..+ ++..|+++|..+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~---~~~~is~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY---GIPHISTGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEEECCccHH
Confidence 7889999999997 66677666 488999988775
No 94
>PRK02496 adk adenylate kinase; Provisional
Probab=97.91 E-value=1.4e-05 Score=70.64 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=28.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|.+ |.|.|++|||||| |+.|+..+ ++..++.|+..+
T Consensus 1 ~~~-i~i~G~pGsGKst~a~~la~~~---~~~~i~~~~~~~ 37 (184)
T PRK02496 1 MTR-LIFLGPPGAGKGTQAVVLAEHL---HIPHISTGDILR 37 (184)
T ss_pred CeE-EEEECCCCCCHHHHHHHHHHHh---CCcEEEhHHHHH
Confidence 444 7889999999997 66666666 577899988875
No 95
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.89 E-value=3.7e-05 Score=69.05 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
.+|+|+|.+|||||| ++.++..|... ++.++..|++..
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 489999999999998 77888877543 577788888763
No 96
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.86 E-value=2.9e-05 Score=70.32 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=27.6
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|+|++|||||| |+.|++.+ ++.+|+++|..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~---g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY---GLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCeeehhHHHHH
Confidence 7889999999997 66666655 5889999998763
No 97
>PRK14527 adenylate kinase; Provisional
Probab=97.86 E-value=2.7e-05 Score=69.43 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.|.|++|||||| |+.+++.+ ++..+++|+..+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~---~~~~is~gd~~r 42 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL---GLKKLSTGDILR 42 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCCCCccHHHH
Confidence 489999999999997 66666666 467788888875
No 98
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.84 E-value=3.6e-05 Score=75.44 Aligned_cols=143 Identities=18% Similarity=0.094 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEccceecCCchhhhhhccCCCCcccc------chhHHHHHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDYHSLDRTGRKEKGVTALDPRAN------NFDLMYEQVKAMKD 73 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~------d~d~L~~~L~~L~~ 73 (329)
++.++|.+|||||| ++.+++.|.. ..+.++++|||+.....+.. .+. -.|+.+ -...|+..+.++..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~-~~~--~~~~~~k~~R~~i~~~le~~v~a~~~ 77 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELD-QSR--EIPSQWKQFRQELLKYLEHFLVAVIN 77 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhh-cCC--CcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36789999999999 8888988863 36999999999964222111 111 112222 12223334444443
Q ss_pred CCceecccccc-------------ccCC---CC-CC----c-----ccCCCcEEEEEccccccchh--hhc---cC---C
Q 048274 74 GVSVEKPIYNH-------------VTGL---LD-PP----E-----LIKPPKILVIEGLHPMYDAR--VRE---LL---D 119 (329)
Q Consensus 74 G~~i~~P~Yd~-------------~tg~---~~-~~----~-----~i~p~~vlIvEGl~~l~~~~--lr~---~~---D 119 (329)
| ....|.-+. ..|- .+ .+ . .+....++|++..+.....+ +.. .+ -
T Consensus 78 g-~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~ 156 (340)
T TIGR03575 78 G-SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGF 156 (340)
T ss_pred c-ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCE
Confidence 3 332221111 0110 00 01 0 11234589999888654221 111 11 2
Q ss_pred EEEEEECCHHHHHHHhhcccccccCCchhhHHHHH
Q 048274 120 FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASI 154 (329)
Q Consensus 120 ~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i 154 (329)
..||+++|.++.++|--+|. +.++ +++++.+
T Consensus 157 ~~V~ld~ple~~l~RN~~R~---~~v~-devie~m 187 (340)
T TIGR03575 157 CQLFLDCPVESCLLRNKQRP---VPLP-DETIQLM 187 (340)
T ss_pred EEEEEeCCHHHHHHHHhcCC---CCCC-HHHHHHH
Confidence 68999999999999987774 2344 4445544
No 99
>PRK14532 adenylate kinase; Provisional
Probab=97.84 E-value=7.9e-05 Score=65.92 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|.|++|||||| |+.||+.+ ++..|++|+..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~---g~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER---GMVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCeEEeCcHHHHH
Confidence 6789999999998 77777666 5889999998763
No 100
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.79 E-value=3.5e-05 Score=83.68 Aligned_cols=77 Identities=19% Similarity=0.169 Sum_probs=55.6
Q ss_pred EEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hcccchhhhccccCCCCcEE-Eec
Q 048274 101 LVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-ARKPDFDAYIDPQKQYADAV-IEV 178 (329)
Q Consensus 101 lIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r~pd~~~yI~Pqk~~ADiV-I~~ 178 (329)
+|+||==... -+-...|+++|+++++++|..||..--.. .-+.+++.+.+. +-.-|..+-+.|.+.-.|.+ |++
T Consensus 192 ~V~eGRDigT--vVfPdA~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDt 267 (863)
T PRK12269 192 VVCEGRDLTT--VVFVDADLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDT 267 (863)
T ss_pred EEEECCCCcc--EECCCCCEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEEC
Confidence 7777643322 25577899999999999999998754332 367889999886 45778878899987777754 555
Q ss_pred CCC
Q 048274 179 LPT 181 (329)
Q Consensus 179 ~p~ 181 (329)
...
T Consensus 268 s~l 270 (863)
T PRK12269 268 SCL 270 (863)
T ss_pred CCC
Confidence 433
No 101
>PRK13948 shikimate kinase; Provisional
Probab=97.78 E-value=5e-05 Score=68.06 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=73.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHHH-HHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLMY-EQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i~~ 79 (329)
..|.+.|.+|||||| ++.||+.|+ ..+|++|.+... ..++.- ..+..++.. .|..++ +.+..+...
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~-~~g~si~~if~~~Ge~--~fR~~E~~~l~~l~~~----- 79 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIER-VTGKSIPEIFRHLGEA--YFRRCEAEVVRRLTRL----- 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHH-HHhCCHHHHHHHhCHH--HHHHHHHHHHHHHHhc-----
Confidence 468899999999998 777777774 667899976431 111100 011112221 122222 223333310
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhhcccc---cccCCchhhHHH
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKIQRDM---TERGHSLESIKA 152 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI~RD~---~eRG~s~E~V~~ 152 (329)
...||.-|--.+..+ .+++ ....|||++++++-.+|. .++. ...+.+.+++.+
T Consensus 80 ------------------~~~VIa~GgG~v~~~~n~~~l~~-~g~vV~L~~~~e~l~~Rl-~~~~RPll~~~~~~~~l~~ 139 (182)
T PRK13948 80 ------------------DYAVISLGGGTFMHEENRRKLLS-RGPVVVLWASPETIYERT-RPGDRPLLQVEDPLGRIRT 139 (182)
T ss_pred ------------------CCeEEECCCcEEcCHHHHHHHHc-CCeEEEEECCHHHHHHHh-cCCCCCCCCCCChHHHHHH
Confidence 123333322112122 2333 267899999999888764 4331 011122345666
Q ss_pred HHhhcccchhhhccccCCCCcEEEec
Q 048274 153 SIEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 153 ~i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
.++.|.|.|. . ||++|+.
T Consensus 140 l~~~R~~~Y~-------~-a~~~i~t 157 (182)
T PRK13948 140 LLNEREPVYR-------Q-ATIHVST 157 (182)
T ss_pred HHHHHHHHHH-------h-CCEEEEC
Confidence 6778888884 3 8999984
No 102
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.76 E-value=8.9e-05 Score=65.96 Aligned_cols=115 Identities=16% Similarity=0.107 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCCchhhhhhccCC-CCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTA-LDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~-~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
.|+|+|.+|.|||| +++.|...+..++++-+|.+...--. +.+. ..--..|.+.+...+..+..
T Consensus 2 ~I~ITGTPGvGKTT---~~~~L~~lg~~~i~l~el~~e~~~~~---~~de~r~s~~vD~d~~~~~le~~~~--------- 66 (180)
T COG1936 2 LIAITGTPGVGKTT---VCKLLRELGYKVIELNELAKENGLYT---EYDELRKSVIVDVDKLRKRLEELLR--------- 66 (180)
T ss_pred eEEEeCCCCCchHH---HHHHHHHhCCceeeHHHHHHhcCCee---ccCCccceEEeeHHHHHHHHHHHhc---------
Confidence 58999999999995 55555544667787777765210000 0000 01235677788877765531
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhc
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEAR 157 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r 157 (329)
..-.|+||-+.- +-..+|+.|-+.++|++-.+|.- .|||+++.+.+-+++.
T Consensus 67 ---------------~~~~Ivd~H~~h----l~~~~dlVvVLR~~p~~L~~RLk-----~RGy~~eKI~ENveAE 117 (180)
T COG1936 67 ---------------EGSGIVDSHLSH----LLPDCDLVVVLRADPEVLYERLK-----GRGYSEEKILENVEAE 117 (180)
T ss_pred ---------------cCCeEeechhhh----cCCCCCEEEEEcCCHHHHHHHHH-----HcCCCHHHHHHHHHHH
Confidence 123566654432 44488999999999998777643 4799999888766543
No 103
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.73 E-value=9.5e-05 Score=66.14 Aligned_cols=71 Identities=21% Similarity=0.090 Sum_probs=38.0
Q ss_pred CcEEEEEccccccchhhhccC-C-EEEEEECC-HHHHHHHhhcccccccC-CchhhHHHHHhhcccchhhhccccCCCCc
Q 048274 98 PKILVIEGLHPMYDARVRELL-D-FSIYLDIS-NEVKFAWKIQRDMTERG-HSLESIKASIEARKPDFDAYIDPQKQYAD 173 (329)
Q Consensus 98 ~~vlIvEGl~~l~~~~lr~~~-D-~~IyVD~~-~evrl~rkI~RD~~eRG-~s~E~V~~~i~~r~pd~~~yI~Pqk~~AD 173 (329)
..++|++.-.... ..+.+.+ | +.||+.++ .+...+|... || .+.+.+.+++.+.....+ + ...+|
T Consensus 95 g~~vi~dl~~~g~-~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~-----R~~~~~~~i~~rl~~~~~~~~----~-~~~~d 163 (205)
T PRK00300 95 GKDVLLEIDWQGA-RQVKKKMPDAVSIFILPPSLEELERRLRG-----RGTDSEEVIARRLAKAREEIA----H-ASEYD 163 (205)
T ss_pred CCeEEEeCCHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHH----h-HHhCC
Confidence 4455655432222 3455555 3 66888654 5555555443 45 456666667765443332 2 25689
Q ss_pred EEEecC
Q 048274 174 AVIEVL 179 (329)
Q Consensus 174 iVI~~~ 179 (329)
.+|.+.
T Consensus 164 ~vi~n~ 169 (205)
T PRK00300 164 YVIVND 169 (205)
T ss_pred EEEECC
Confidence 998654
No 104
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.71 E-value=1.5e-05 Score=66.83 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
||.+.|++|||||| ++.+++.+. ..+|+.|.++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~~ 35 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIRR 35 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHHH
Confidence 68899999999996 555555554 88999999875
No 105
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.68 E-value=6.5e-05 Score=66.82 Aligned_cols=139 Identities=20% Similarity=0.248 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhh-ccCCCCccccchhHHHH-HHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEK-GVTALDPRANNFDLMYE-QVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~-~~~~~~Pea~d~d~L~~-~L~~L~~G~~i~~ 79 (329)
.-|-+.|..|||||| ++.||+.|+ ...+++|...-. +..+.-. -+...+. -.|..++. .|.++.+..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~-~~g~sI~eIF~~~GE--~~FR~~E~~vl~~l~~~~---- 72 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEK-RTGMSIAEIFEEEGE--EGFRRLETEVLKELLEED---- 72 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHH-HHCcCHHHHHHHHhH--HHHHHHHHHHHHHHhhcC----
Confidence 347789999999999 888888885 556888876531 2222110 1111111 12233332 455554321
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccchhhhccCC---EEEEEECCHHHHHHHhhcccccc---cCCch-hhHHH
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLD---FSIYLDISNEVKFAWKIQRDMTE---RGHSL-ESIKA 152 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D---~~IyVD~~~evrl~rkI~RD~~e---RG~s~-E~V~~ 152 (329)
+.||-=|=-....++-|..+. +.||++++.++-.+| +++|... ...++ +.+.+
T Consensus 73 -------------------~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~R-l~~~~~RPll~~~~~~~~l~~ 132 (172)
T COG0703 73 -------------------NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYER-LQRDRKRPLLQTEDPREELEE 132 (172)
T ss_pred -------------------CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHH-hccccCCCcccCCChHHHHHH
Confidence 123322222222333343332 899999999988775 4444321 23345 44666
Q ss_pred HHhhcccchhhhccccCCCCcEEEec
Q 048274 153 SIEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 153 ~i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
-++.|.|.|++ .||++++.
T Consensus 133 L~~~R~~~Y~e-------~a~~~~~~ 151 (172)
T COG0703 133 LLEERQPLYRE-------VADFIIDT 151 (172)
T ss_pred HHHHHHHHHHH-------hCcEEecC
Confidence 77899999985 48998875
No 106
>PLN02199 shikimate kinase
Probab=97.66 E-value=9.1e-05 Score=71.25 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=76.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhh-hhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGR-KEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~-~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
+-|.|+|.+|||||| ++.+|+.| +..+|++|.+....-..+ -..-+..++.+.+. +.-.+.|..+....
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR-~~E~e~L~~L~~~~----- 173 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFR-GKETDALKKLSSRY----- 173 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHH-HHHHHHHHHHHhcC-----
Confidence 358899999999997 66666666 588999999764210111 11122333433222 22223455554311
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccchhhhcc--CCEEEEEECCHHHHHHHhhccc-ccccCC----ch------
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVREL--LDFSIYLDISNEVKFAWKIQRD-MTERGH----SL------ 147 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~--~D~~IyVD~~~evrl~rkI~RD-~~eRG~----s~------ 147 (329)
.+||-=|--....+..+.+ --+.||++++++...+| +.++ ...|.. +.
T Consensus 174 ------------------~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~R-L~~~~~~~RPLL~~~~~d~~~~~ 234 (303)
T PLN02199 174 ------------------QVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHR-IAAVGTDSRPLLHDESGDAYSVA 234 (303)
T ss_pred ------------------CEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHH-HhhcCCCCCCcCCCCCcchhhhH
Confidence 1222222222222322222 24789999999977765 4431 122322 22
Q ss_pred -hhHHHHHhhcccchhhhccccCCCCcEEEe
Q 048274 148 -ESIKASIEARKPDFDAYIDPQKQYADAVIE 177 (329)
Q Consensus 148 -E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~ 177 (329)
+.+.+.++.|.|.|. + ||++|+
T Consensus 235 ~~~L~~L~~~R~plY~-------~-Ad~~V~ 257 (303)
T PLN02199 235 FKRLSAIWDERGEAYT-------N-ANARVS 257 (303)
T ss_pred HHHHHHHHHHHHHHHH-------h-CCEEEe
Confidence 345556678999996 3 999987
No 107
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.64 E-value=0.0002 Score=66.40 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|+|++|||||| |+.||+.+ ++.+|++|+..+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~---g~~~is~gdllr~ 43 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE---NLKHINMGNILRE 43 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEEECChHHHH
Confidence 8899999999997 66676666 5899999999974
No 108
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.63 E-value=0.00061 Score=60.33 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
.+|.|.|+.|||||| ++.|++.|...+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g 31 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENG 31 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 479999999999999 888999987643
No 109
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.60 E-value=9.4e-05 Score=66.08 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=64.1
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHH-HhcCCceecccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKA-MKDGVSVEKPIY 82 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~-L~~G~~i~~P~Y 82 (329)
|.|.|++|||||| |+.|++.+ +++.|++|++++..-... ..+....+. +..|+-+.--.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~---~i~hlstgd~~r~~~~~~---------------t~lg~~~k~~i~~g~lv~d~i~ 64 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL---GLPHLDTGDILRAAIAER---------------TELGEEIKKYIDKGELVPDEIV 64 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEEcHhHHhHhhhccC---------------ChHHHHHHHHHHcCCccchHHH
Confidence 6799999999998 88888884 588899999988521111 122222222 122221100001
Q ss_pred ccccCCCCCCccc-CCCcEEEEEccccccch------hhh---ccCCEEEEEECCHHHHHHHhhcccc
Q 048274 83 NHVTGLLDPPELI-KPPKILVIEGLHPMYDA------RVR---ELLDFSIYLDISNEVKFAWKIQRDM 140 (329)
Q Consensus 83 d~~tg~~~~~~~i-~p~~vlIvEGl~~l~~~------~lr---~~~D~~IyVD~~~evrl~rkI~RD~ 140 (329)
+. .+..+... ....-+|++|..-.... .+. ...|..+.++.+.++-+.|-..|..
T Consensus 65 ~~---~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 65 NG---LVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred HH---HHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 00 00111000 11125777776544311 111 3679999999999999998777754
No 110
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.60 E-value=0.0004 Score=61.68 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC----CchhhhhhccCCCCccccchhHHHHHHHHHhcCCc
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL----DRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVS 76 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~----dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~ 76 (329)
++++|.|.||+||||+ ++++.|..... |.|... .|..+.. +..+. .+.|-.-.+.-..+..|+=
T Consensus 1 ~~r~ivl~Gpsg~GK~---tl~~~L~~~~~-----~~~~~~~~~TtR~~r~~---e~~g~-dy~fvs~~ef~~~i~~g~f 68 (184)
T smart00072 1 DRRPIVLSGPSGVGKG---TLLAELIQEIP-----DAFERVVSHTTRPPRPG---EVNGV-DYHFVSREEFEDDIKSGLF 68 (184)
T ss_pred CCcEEEEECCCCCCHH---HHHHHHHhcCC-----cceEeeeeecCCCCCCC---CcCCc-eEEECCHHHHHHHHHcCCe
Confidence 5789999999999999 45555543210 123221 2322211 11111 1222221222233344665
Q ss_pred eecccccc-ccCCCCCC--cccCCCcEEEEEccccccchhhhcc-CC-EEEEEECCHHHHHHHhhcccccccCC-chhhH
Q 048274 77 VEKPIYNH-VTGLLDPP--ELIKPPKILVIEGLHPMYDARVREL-LD-FSIYLDISNEVKFAWKIQRDMTERGH-SLESI 150 (329)
Q Consensus 77 i~~P~Yd~-~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~lr~~-~D-~~IyVD~~~evrl~rkI~RD~~eRG~-s~E~V 150 (329)
++.-.|+- .-|+..+. ..+....++|+++-.... ..++.. .+ +.||+.++....+.+|+.. ||. +.+++
T Consensus 69 ve~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~----R~~~~~~~i 143 (184)
T smart00072 69 LEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRG----RGTETAERI 143 (184)
T ss_pred EEEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHh----cCCCCHHHH
Confidence 66554432 22221111 122346677777654433 334432 34 8999996554444444432 444 55667
Q ss_pred HHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 151 KASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.+++.+..-.... ....|.+|.|.
T Consensus 144 ~~rl~~a~~~~~~-----~~~fd~~I~n~ 167 (184)
T smart00072 144 QKRLAAAQKEAQE-----YHLFDYVIVND 167 (184)
T ss_pred HHHHHHHHHHHhh-----hccCCEEEECc
Confidence 7777642111111 25578998875
No 111
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.59 E-value=0.00029 Score=62.26 Aligned_cols=38 Identities=16% Similarity=0.036 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC--eEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT--TTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~--v~vI~~Ddyhr 40 (329)
.+|.|+|.+|||||| ++.++..|...+ +.+++.|++.+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 589999999999998 788888775443 67778887653
No 112
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.59 E-value=0.00024 Score=65.95 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
+|.++|.+|||||| |+.+++.|... .+.+++.|.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 47899999999999 88888888643 4666666654
No 113
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.59 E-value=7.6e-05 Score=65.46 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
.+|-|+|.+|||||| |..|.+.|.+. .+.++++|.+-.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 478999999999999 88888888754 688888887654
No 114
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.00017 Score=62.77 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=60.3
Q ss_pred cCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCcccc-chhHHHHHHHHHhcCCceecccccccc
Q 048274 9 GGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRAN-NFDLMYEQVKAMKDGVSVEKPIYNHVT 86 (329)
Q Consensus 9 GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~-d~d~L~~~L~~L~~G~~i~~P~Yd~~t 86 (329)
|.+|||||| +..||..|+ +..|++|+||-...-+....|+.--+.+-+ -++.+...+..+..+..
T Consensus 2 GVsG~GKStvg~~lA~~lg---~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~---------- 68 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG---AKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK---------- 68 (161)
T ss_pred CCCccCHHHHHHHHHHHcC---CceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC----------
Confidence 889999998 888888885 788999999976333333334332222221 13344444444433221
Q ss_pred CCCCCCcccCCCcEEEEE-ccccccchhhhccC-C-EEEEEECCHHHHHHHhhcc
Q 048274 87 GLLDPPELIKPPKILVIE-GLHPMYDARVRELL-D-FSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 87 g~~~~~~~i~p~~vlIvE-Gl~~l~~~~lr~~~-D-~~IyVD~~~evrl~rkI~R 138 (329)
.+||.. .|---|...+|+.. + ..||++.+.++.++|--+|
T Consensus 69 ------------~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R 111 (161)
T COG3265 69 ------------HVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKAR 111 (161)
T ss_pred ------------ceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhc
Confidence 122221 11112223445444 3 3489999999999987666
No 115
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.52 E-value=0.00018 Score=73.69 Aligned_cols=126 Identities=18% Similarity=0.200 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHHH-HHHHHHhcCCceeccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLMY-EQVKAMKDGVSVEKPI 81 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i~~P~ 81 (329)
|.|+|.+|||||| ++.+++.| ++.+|++|++-.. +..+.- .-+..++.+.+ ..++ +.++.+...
T Consensus 3 I~l~G~~GsGKSTv~~~La~~l---g~~~id~D~~i~~-~~g~~i~~i~~~~Ge~~f--r~~E~~~l~~l~~~------- 69 (488)
T PRK13951 3 IFLVGMMGSGKSTIGKRVSEVL---DLQFIDMDEEIER-REGRSVRRIFEEDGEEYF--RLKEKELLRELVER------- 69 (488)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCeEEECcHHHHH-HcCCCHHHHHHHhhhHHH--HHHHHHHHHHHhhc-------
Confidence 8999999999997 66666665 5889999997542 111100 00111222222 2222 233333321
Q ss_pred cccccCCCCCCcccCCCcEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhhcccccccCC---chhhHHHHH
Q 048274 82 YNHVTGLLDPPELIKPPKILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKIQRDMTERGH---SLESIKASI 154 (329)
Q Consensus 82 Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~---s~E~V~~~i 154 (329)
...||--|--...++ .++. +..+|+++++++..+|-..| .|-. ..+.+.+.+
T Consensus 70 ----------------~~~Vis~Gggvv~~~~~r~~l~~--~~vI~L~as~e~l~~Rl~~~---~RPLl~~~~e~l~~L~ 128 (488)
T PRK13951 70 ----------------DNVVVATGGGVVIDPENRELLKK--EKTLFLYAPPEVLMERVTTE---NRPLLREGKERIREIW 128 (488)
T ss_pred ----------------CCEEEECCCccccChHHHHHHhc--CeEEEEECCHHHHHHHhccC---CCCCccccHHHHHHHH
Confidence 112222221111112 2333 45899999999888874332 1211 135666677
Q ss_pred hhcccchhhh
Q 048274 155 EARKPDFDAY 164 (329)
Q Consensus 155 ~~r~pd~~~y 164 (329)
+.|.|.|.++
T Consensus 129 ~~R~~lY~~~ 138 (488)
T PRK13951 129 ERRKQFYTEF 138 (488)
T ss_pred HHHHHHHhcc
Confidence 7888999863
No 116
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.50 E-value=0.00061 Score=60.50 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+++|.|++|||||| ++.++..+. ...|..|+++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~~ 40 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHPA 40 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCCH
Confidence 479999999999998 677777664 468899998753
No 117
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.49 E-value=0.00017 Score=63.24 Aligned_cols=26 Identities=8% Similarity=-0.143 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
+|.|.|+.|||||| ++.|++.|...+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g 28 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARG 28 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 79999999999999 889999986543
No 118
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.46 E-value=0.00025 Score=68.60 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.6
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc--eecC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD--YHSL 41 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd--yhr~ 41 (329)
|..+|.|+||+|||||+ |..|++.+ ++.+|+.|+ +|+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~---~~~iis~Ds~Qvy~~ 43 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL---NGEIISADSMQVYRG 43 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC---CCcEEeccccceeec
Confidence 46799999999999997 66666665 467999999 5664
No 119
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.45 E-value=0.00028 Score=61.97 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
++|.++|++|||||| |+.|++.+.. ....+..|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHh
Confidence 589999999999997 6667666642 3456788988764
No 120
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.42 E-value=0.00051 Score=61.06 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
..+|.|.|++|||||| ++.|++.|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999 88888888654
No 121
>PRK13975 thymidylate kinase; Provisional
Probab=97.39 E-value=0.00064 Score=60.23 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=24.1
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
|..+|.|.|+.|||||| ++.|++.|..
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 77899999999999999 8888888864
No 122
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.36 E-value=0.00058 Score=64.91 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=59.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
.+|.|+|.+|||||| |+.|+..|.+. .+.+|+-|+.+. ++.. +. ++.........+...-.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~-~~~~-------y~--~~~~Ek~~R~~l~s~v~------ 65 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGI-DRND-------YA--DSKKEKEARGSLKSAVE------ 65 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--TTSS-------S----GGGHHHHHHHHHHHHH------
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccccc-chhh-------hh--chhhhHHHHHHHHHHHH------
Confidence 368999999999998 88888877654 577777666662 1111 10 12222222222221111
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccchhhh----------ccCCEEEEEECCHHHHHHHhhcccccccCCchhh
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVR----------ELLDFSIYLDISNEVKFAWKIQRDMTERGHSLES 149 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr----------~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~ 149 (329)
..+....|||+++++ ++ +.+| ..--..||++++.+.+++|-.+|...+ .|+.|-
T Consensus 66 -------------r~ls~~~iVI~Dd~n-Yi-Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~-~~~~e~ 129 (270)
T PF08433_consen 66 -------------RALSKDTIVILDDNN-YI-KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE-RYPEET 129 (270)
T ss_dssp -------------HHHTT-SEEEE-S----S-HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S---S-HHH
T ss_pred -------------HhhccCeEEEEeCCc-hH-HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC-CCCHHH
Confidence 012235799999987 22 3333 223467999999999999988886432 365544
Q ss_pred HHH
Q 048274 150 IKA 152 (329)
Q Consensus 150 V~~ 152 (329)
+.+
T Consensus 130 i~~ 132 (270)
T PF08433_consen 130 IDD 132 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 123
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.33 E-value=0.00039 Score=72.20 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=79.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHHHH-HHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLMYE-QVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L~~-~L~~L~~G~~i~~ 79 (329)
..|.+.|..|||||| ++.+|+.|+ ...|++|.+.-. +..+.- .-+...+.+.| ..++. .|..+...
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~-~~g~si~eif~~~Ge~~F--R~~E~~~l~~~~~~----- 75 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIER-EIGMSIPSYFEEYGEPAF--REVEADVVADMLED----- 75 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHH-HHCcCHHHHHHHHHHHHH--HHHHHHHHHHHHhc-----
Confidence 468899999999998 778888884 778999997542 222111 11122222222 33332 34444321
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccchhhhcc-------CCEEEEEECCHHHHHHHhhccccccc----CCchh
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVREL-------LDFSIYLDISNEVKFAWKIQRDMTER----GHSLE 148 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~-------~D~~IyVD~~~evrl~rkI~RD~~eR----G~s~E 148 (329)
.+.||-=|=-....+.-+.. --+.|||+.+++...+| +.++. .| +.+.+
T Consensus 76 ------------------~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~R-l~~~~-~RPll~~~~~~ 135 (542)
T PRK14021 76 ------------------FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMER-ANRGG-GRPMLNGDANK 135 (542)
T ss_pred ------------------CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHH-HhCCC-CCCCCCCCcHH
Confidence 11223222111122322221 13899999999988876 33332 22 22345
Q ss_pred hHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 149 SIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.+.+.+.+|.|.|+ +.||++|+..
T Consensus 136 ~~~~l~~~R~~~Y~-------~~Ad~~i~~~ 159 (542)
T PRK14021 136 RWKKLFKQRDPVFR-------QVANVHVHTR 159 (542)
T ss_pred HHHHHHHHHHHHHH-------hhCCEEEECC
Confidence 66677788999996 5799999853
No 124
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00051 Score=62.99 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
.+|+|.|++|+|||| |++||+.|+..
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhCCc
Confidence 589999999999999 99999999853
No 125
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.00016 Score=63.46 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=32.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD 42 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d 42 (329)
..+|-|.|.+|||||| ++.|+..|+ ...|++||||-+.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp~~ 50 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHPPA 50 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCCHH
Confidence 3589999999999998 777777775 7789999999874
No 126
>PRK14526 adenylate kinase; Provisional
Probab=97.29 E-value=0.00049 Score=63.03 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|.|++|||||| ++.+++.+ +...|++++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~---~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL---NYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCceeecChHHHH
Confidence 6789999999997 66666655 4778888888763
No 127
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.00042 Score=62.29 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=69.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCch----hhhhh-----ccCCCCccccchhHHHHHHHHH
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRT----GRKEK-----GVTALDPRANNFDLMYEQVKAM 71 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~----~~~~~-----~~~~~~Pea~d~d~L~~~L~~L 71 (329)
-.||-|.||+||||-| |..++..+. .+.+++.|..|...+ ++... .-.-.-|...-.++|++.+.+.
T Consensus 8 ~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 8 PPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred CCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 3589999999999998 777777764 889999998874211 01000 0011234333344444444333
Q ss_pred hcCCceeccccccccCCCCCCcccCCCcEEEEEcccccc------chhhhccCCEEEEEECCHHHHHHHhhcccccc
Q 048274 72 KDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMY------DARVRELLDFSIYLDISNEVKFAWKIQRDMTE 142 (329)
Q Consensus 72 ~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~------~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~e 142 (329)
... .-.+|+|..==. ...+....|+.+|+||++++.++|-++|+...
T Consensus 85 ~~~------------------------~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~ 137 (195)
T KOG3079|consen 85 GDS------------------------NGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN 137 (195)
T ss_pred CCC------------------------CeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 321 115555533111 11233357999999999999999999998653
No 128
>PRK13973 thymidylate kinase; Provisional
Probab=97.16 E-value=0.0014 Score=59.78 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.0
Q ss_pred Cc-EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 1 MR-RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 1 mr-~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
|+ .+|.|-|+.|||||| ++.|++.|...+..++.+
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 54 689999999999999 999999998776666544
No 129
>PHA00729 NTP-binding motif containing protein
Probab=97.13 E-value=0.0017 Score=60.30 Aligned_cols=113 Identities=11% Similarity=0.039 Sum_probs=66.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
-|.|+|++|+|||| |..+++.+.. ....+..|+-+. +. .. .---++.+.+.+.|.....+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~-~l~~l~~~~~~~-d~-~~--------~~~fid~~~Ll~~L~~a~~~~------- 80 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFW-KLNNLSTKDDAW-QY-VQ--------NSYFFELPDALEKIQDAIDND------- 80 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-hcccccchhhHH-hc-CC--------cEEEEEHHHHHHHHHHHHhcC-------
Confidence 47899999999998 7777777641 222233331110 00 00 122456666777776544321
Q ss_pred ccccCCCCCCcccCCCcEEEEEc---------ccc-------ccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCc
Q 048274 83 NHVTGLLDPPELIKPPKILVIEG---------LHP-------MYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHS 146 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEG---------l~~-------l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s 146 (329)
...++||+|+ .|. -..+.++..+++.++..++++...++.- +||++
T Consensus 81 -------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr-----~Rg~~ 142 (226)
T PHA00729 81 -------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR-----EKGWY 142 (226)
T ss_pred -------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH-----hCCCc
Confidence 1135777777 231 0124567789999999999887766432 36777
Q ss_pred hhhHHH
Q 048274 147 LESIKA 152 (329)
Q Consensus 147 ~E~V~~ 152 (329)
...+.+
T Consensus 143 ~~kI~e 148 (226)
T PHA00729 143 QIRVTM 148 (226)
T ss_pred HHHhhh
Confidence 665543
No 130
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.13 E-value=0.00046 Score=61.05 Aligned_cols=155 Identities=18% Similarity=0.237 Sum_probs=74.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCC-eEEEEccceecCCchhhhh--hccCCCCccccchhHHHHHHHHHhcCCce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDT-TTVICLDDYHSLDRTGRKE--KGVTALDPRANNFDLMYEQVKAMKDGVSV 77 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~-v~vI~~Ddyhr~dr~~~~~--~~~~~~~Pea~d~d~L~~~L~~L~~G~~i 77 (329)
+++|.|+||+|||||| ++.|.+.+...- ..+-++ .|+.+.. .|.+ +.|-.-++.-+....|+=+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T------TR~~r~~E~~g~~------y~fvs~~~f~~~~~~~~fi 69 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT------TRPPRPGEVDGVD------YHFVSKEEFERMIKAGEFI 69 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE------SS-GGTTS-TTTS------EEE--HHHHHHHHHTTHEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec------ccCCcccccCCcc------eEEEeechhhhhhccccEE
Confidence 5789999999999996 555555554321 122222 3433321 1222 2222222222333456666
Q ss_pred eccccc-cccCCCCCC--cccCCCcEEEEEc-cccccchhhh--ccCCEEEEEECCHHHHHHHhhcccccccCCc-hhhH
Q 048274 78 EKPIYN-HVTGLLDPP--ELIKPPKILVIEG-LHPMYDARVR--ELLDFSIYLDISNEVKFAWKIQRDMTERGHS-LESI 150 (329)
Q Consensus 78 ~~P~Yd-~~tg~~~~~--~~i~p~~vlIvEG-l~~l~~~~lr--~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s-~E~V 150 (329)
+.-.|+ +.-|+.... ..+....+++++. +.++ ..++ ...=+.|||.++....+++++.+ ||.. .+++
T Consensus 70 e~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~--~~L~~~~~~~~~IfI~~~s~~~l~~~l~~----r~~~~~~~i 143 (183)
T PF00625_consen 70 EYGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGV--KQLKKAGFNPIVIFIKPPSPEVLKRRLRR----RGDESEEEI 143 (183)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHH--HHHHHCTTTEEEEEEEESSHHHHHHHHHT----TTHCHHHHH
T ss_pred EEeeecchhhhhccchhhHhhhcCCcEEEEccHHHH--HHHHhcccCceEEEEEccchHHHHHHHhc----cccccHHHH
Confidence 666664 223321111 1122344444432 2222 2233 33447899988766666666643 5654 3445
Q ss_pred HHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 151 KASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.+++....-++..+ ...|.||.|-
T Consensus 144 ~~r~~~~~~~~~~~-----~~fd~vi~n~ 167 (183)
T PF00625_consen 144 EERLERAEKEFEHY-----NEFDYVIVND 167 (183)
T ss_dssp HHHHHHHHHHHGGG-----GGSSEEEECS
T ss_pred HHHHHHHHHHHhHh-----hcCCEEEECc
Confidence 55554322233321 1288898874
No 131
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0012 Score=59.61 Aligned_cols=149 Identities=18% Similarity=0.216 Sum_probs=80.7
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC----Cchhhhh--hccCCCCccccchhHHHHHHHHHhcCC
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL----DRTGRKE--KGVTALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~----dr~~~~~--~~~~~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
..++.|+||||+||| |+.+.|.+.. .++.. .|++|.- .|..++ |-.-.+....+.+++
T Consensus 4 G~l~vlsgPSG~GKs---Tl~k~L~~~~-------~l~~SVS~TTR~pR~gEv~G~dY~------Fvs~~EF~~~i~~~~ 67 (191)
T COG0194 4 GLLIVLSGPSGVGKS---TLVKALLEDD-------KLRFSVSATTRKPRPGEVDGVDYF------FVTEEEFEELIERDE 67 (191)
T ss_pred ceEEEEECCCCCCHH---HHHHHHHhhc-------CeEEEEEeccCCCCCCCcCCceeE------eCCHHHHHHHHhcCC
Confidence 468999999999999 5666665432 22221 3555432 244322 222223333444566
Q ss_pred ceecccc-ccccCCCCCCc--cc-CCCcEE-EEEccccccchhhhccC-C-EEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 76 SVEKPIY-NHVTGLLDPPE--LI-KPPKIL-VIEGLHPMYDARVRELL-D-FSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 76 ~i~~P~Y-d~~tg~~~~~~--~i-~p~~vl-IvEGl~~l~~~~lr~~~-D-~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
=+++..| +.--|+..++. .+ ...+|| -+| +.|.. .+++.+ | +.||+.+|.-..+++|+.+ ||-..+
T Consensus 68 fLE~a~~~gnyYGT~~~~ve~~~~~G~~vildId-~qGa~--qvk~~~p~~v~IFi~pPs~eeL~~RL~~----Rgtds~ 140 (191)
T COG0194 68 FLEWAEYHGNYYGTSREPVEQALAEGKDVILDID-VQGAL--QVKKKMPNAVSIFILPPSLEELERRLKG----RGTDSE 140 (191)
T ss_pred cEEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEe-hHHHH--HHHHhCCCeEEEEEcCCCHHHHHHHHHc----cCCCCH
Confidence 6776654 33334433332 11 234443 344 33332 266666 4 6799999988888888866 776555
Q ss_pred h-HHHHHhhcccchhhhccccCCCCcEEEec
Q 048274 149 S-IKASIEARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 149 ~-V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+ +..++....-.... ...-|.||-|
T Consensus 141 e~I~~Rl~~a~~Ei~~-----~~~fdyvivN 166 (191)
T COG0194 141 EVIARRLENAKKEISH-----ADEFDYVIVN 166 (191)
T ss_pred HHHHHHHHHHHHHHHH-----HHhCCEEEEC
Confidence 5 44566532222222 1346777766
No 132
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.10 E-value=0.0016 Score=59.05 Aligned_cols=41 Identities=20% Similarity=0.040 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEccceecCCc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDDYHSLDR 43 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Ddyhr~dr 43 (329)
+.|++.|+.|||||+ -..+.+.|.. ..++||..|-|.+.|.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da 56 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDA 56 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhH
Confidence 379999999999998 5555666644 4899999999997653
No 133
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.08 E-value=0.0013 Score=60.08 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCEEEEEECCHHHHHHHhhcccccccCCchhh-H-HHHHhhcccchhhhccc-cCCCCcEEEec
Q 048274 118 LDFSIYLDISNEVKFAWKIQRDMTERGHSLES-I-KASIEARKPDFDAYIDP-QKQYADAVIEV 178 (329)
Q Consensus 118 ~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~-V-~~~i~~r~pd~~~yI~P-qk~~ADiVI~~ 178 (329)
-|+.||+|+++++.++|.-+| |+..|. + .+.+.+..-.|.++..| ....+++++-+
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R-----~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id 201 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKR-----GDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYD 201 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHc-----CCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEe
Confidence 499999999999998885544 433322 1 12334445556555544 23456666543
No 134
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.07 E-value=0.001 Score=57.21 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
+|.|.|.+|||||| ++.++..+... .+.+++.|.+.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 57899999999998 88888888533 466777777654
No 135
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.05 E-value=0.00073 Score=59.92 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=31.3
Q ss_pred cCCEEEEEECCHHHHHHHhhcccccccCCchhhH--HHHHhhcccchhhhccc
Q 048274 117 LLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI--KASIEARKPDFDAYIDP 167 (329)
Q Consensus 117 ~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V--~~~i~~r~pd~~~yI~P 167 (329)
.-|+.+|+++++++.++|..+| |+..|.. .+.+.+....|..+...
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R-----~r~~e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKR-----GRPEEQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhc-----CcHhhhcCCHHHHHHHHHHHHHHHhh
Confidence 5799999999999998885444 4443321 34455566677777654
No 136
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.02 E-value=0.00044 Score=59.96 Aligned_cols=130 Identities=24% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhh-hhccCCCCccccchhHHH-HHHHHHhcCCceeccccccccC
Q 048274 11 AAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRK-EKGVTALDPRANNFDLMY-EQVKAMKDGVSVEKPIYNHVTG 87 (329)
Q Consensus 11 sgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~-~~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i~~P~Yd~~tg 87 (329)
+|||||| ++.||+.|+ ...+++|+++.. ...+. ...+...+++.+ ..++ +.|..+...
T Consensus 1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~-~~g~si~~i~~~~G~~~f--r~~E~~~l~~l~~~------------- 61 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEE-RTGMSISEIFAEEGEEAF--RELESEALRELLKE------------- 61 (158)
T ss_dssp TTSSHHHHHHHHHHHHT---SEEEEHHHHHHH-HHTSHHHHHHHHHHHHHH--HHHHHHHHHHHHCS-------------
T ss_pred CCCcHHHHHHHHHHHhC---CCccccCHHHHH-HhCCcHHHHHHcCChHHH--HHHHHHHHHHHhcc-------------
Confidence 5999998 888888885 889999999852 11111 011111122222 1222 234444431
Q ss_pred CCCCCcccCCCcEEEEEccccccchhhhccC---CEEEEEECCHHHHHHHhhcccccccCC----ch-hhHHHHHhhccc
Q 048274 88 LLDPPELIKPPKILVIEGLHPMYDARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGH----SL-ESIKASIEARKP 159 (329)
Q Consensus 88 ~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~----s~-E~V~~~i~~r~p 159 (329)
...||.-|--....+..++++ -..|||+.+++.-.+|...++. |.. .. +.....+..|.|
T Consensus 62 ----------~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~--Rp~l~~~~~~~~~~~~~~~R~~ 129 (158)
T PF01202_consen 62 ----------NNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDN--RPLLKGKMEHEEILELLFEREP 129 (158)
T ss_dssp ----------SSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCT--SGGTCSHHHHHHHHHHHHHHHH
T ss_pred ----------CcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCC--CCCCCCCChHHHHHHHHHHHHH
Confidence 145555543333334444443 5899999999988887555543 311 11 233444447888
Q ss_pred chhhhccccCCCCcEEEec
Q 048274 160 DFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 160 d~~~yI~Pqk~~ADiVI~~ 178 (329)
.|.+ .||++++.
T Consensus 130 ~Y~~-------~a~~~v~~ 141 (158)
T PF01202_consen 130 LYEQ-------AADIVVDT 141 (158)
T ss_dssp HHHH-------HSSEEEET
T ss_pred HHHh-------cCeEEEeC
Confidence 8885 48888875
No 137
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.99 E-value=0.0011 Score=56.64 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=26.4
Q ss_pred EEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 7 VFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 7 I~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|.|++|||||| |+.+|+.+ +...|+..+..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~---~~~~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY---GLVHISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH---TSEEEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc---CcceechHHHHH
Confidence 68999999998 78888877 588999988875
No 138
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.98 E-value=0.0024 Score=66.80 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc-C--CeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS-D--TTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~-~--~v~vI~~Ddy 38 (329)
+|.|+|.+|||||| |+.|+..|.. . .+.+++.|..
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 78999999999999 8888888874 2 3688888876
No 139
>PLN02674 adenylate kinase
Probab=96.97 E-value=0.0018 Score=60.83 Aligned_cols=35 Identities=6% Similarity=-0.060 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.|.|.|++|||||| |+.||+.+ ++..|++++..+.
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~---~~~his~GdllR~ 68 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEY---CLCHLATGDMLRA 68 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCcEEchhHHHHH
Confidence 47799999999998 77777766 5889999999874
No 140
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.88 E-value=0.00062 Score=61.61 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Ddyhr 40 (329)
++|.+.|++|+|||| +..+|..+. +.++.+||+|.|.-
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 589999999999999 667777765 34799999999864
No 141
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0087 Score=52.47 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=70.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccC-CCCccccchhHHHHHHHHHhc-CCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-ALDPRANNFDLMYEQVKAMKD-GVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~-~~~Pea~d~d~L~~~L~~L~~-G~~i~~ 79 (329)
.=|.|+|.+|+|||| |..+|..+ +...||+-||.+... ..+ +++ -+.--.+|-|.+...|..+-. |.-|
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~---~~~~i~isd~vkEn~--l~~-gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~I-- 79 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKT---GLEYIEISDLVKENN--LYE-GYDEEYKCHILDEDKVLDELEPLMIEGGNI-- 79 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHh---CCceEehhhHHhhhc--chh-cccccccCccccHHHHHHHHHHHHhcCCcE--
Confidence 358899999999998 77777655 467899988877421 110 110 011124566677777765443 3322
Q ss_pred cccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHH
Q 048274 80 PIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASI 154 (329)
Q Consensus 80 P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i 154 (329)
|=+-|.- ++ -..+||+.+.|.+|-++-..|.- .|||+...+..-+
T Consensus 80 ---------------------VDyHgCd-~F---perwfdlVvVLr~~~s~LY~RL~-----sRgY~e~Ki~eNi 124 (176)
T KOG3347|consen 80 ---------------------VDYHGCD-FF---PERWFDLVVVLRTPNSVLYDRLK-----SRGYSEKKIKENI 124 (176)
T ss_pred ---------------------EeecccC-cc---chhheeEEEEEecCchHHHHHHH-----HcCCCHHHHhhhc
Confidence 2222222 22 14578999999999998887643 4799987665543
No 142
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.85 E-value=0.0037 Score=66.03 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=33.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr 40 (329)
-.+|.++|.+|||||| |+.+++.|.. ..+.+|+.|++++
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 3589999999999999 8889888854 3678899999886
No 143
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.85 E-value=0.0045 Score=59.46 Aligned_cols=25 Identities=20% Similarity=0.022 Sum_probs=18.8
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCC
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDT 29 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~ 29 (329)
..+|.|+|++||||| ++++.|...+
T Consensus 6 ~~~i~i~G~~GsGKt---t~~~~l~~~g 30 (288)
T PRK05416 6 MRLVIVTGLSGAGKS---VALRALEDLG 30 (288)
T ss_pred ceEEEEECCCCCcHH---HHHHHHHHcC
Confidence 368999999999999 5666664333
No 144
>PLN02459 probable adenylate kinase
Probab=96.81 E-value=0.0036 Score=59.33 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=62.7
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC---chhhhhh-----ccCCCCccccchhHHHHHHHHHhcCC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD---RTGRKEK-----GVTALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d---r~~~~~~-----~~~~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
|.|.|++|||||| |+.+++.+ ++..|++.+..+.. ..+.... .-..+-|+..-...+.+.|.....
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~-- 106 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLL---GVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE-- 106 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--
Confidence 6678999999998 77777766 58889999988641 1111000 011223444333334333322110
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccch--hhhc--cCCEEEEEECCHHHHHHHhhcc
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDA--RVRE--LLDFSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~--~lr~--~~D~~IyVD~~~evrl~rkI~R 138 (329)
....-+|++|..--... .+.+ .+|..|+++++.++-++|...|
T Consensus 107 --------------------~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR 153 (261)
T PLN02459 107 --------------------EGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGR 153 (261)
T ss_pred --------------------cCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhcc
Confidence 11334666665432211 1111 3699999999999999987766
No 145
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.80 E-value=0.0027 Score=60.73 Aligned_cols=56 Identities=30% Similarity=0.452 Sum_probs=34.9
Q ss_pred CCE-EEEEECCHHHHHHH-hhcccccccCCchh---hHHHHHhhcccchhhhccccCCCCcEEEecCCC
Q 048274 118 LDF-SIYLDISNEVKFAW-KIQRDMTERGHSLE---SIKASIEARKPDFDAYIDPQKQYADAVIEVLPT 181 (329)
Q Consensus 118 ~D~-~IyVD~~~evrl~r-kI~RD~~eRG~s~E---~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~ 181 (329)
+++ .+|+|++.++-+.| +--| |-|... .+++.| ..+++...|-++.||+||+....
T Consensus 81 ~~~~ilFLdA~d~~LirRy~eTR----R~HPL~~~~~~le~I----~~Er~~L~~lr~~Ad~vIDTs~l 141 (284)
T PF03668_consen 81 IDVRILFLDASDEVLIRRYSETR----RRHPLSSDGSLLEAI----EKERELLEPLRERADLVIDTSNL 141 (284)
T ss_pred CceEEEEEECChHHHHHHHHhcc----CCCCCCCCCCcHHHH----HHHHHHHHHHHHhCCEEEECCCC
Confidence 443 58999999988877 2222 333221 122223 22345667788999999999776
No 146
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.80 E-value=0.0049 Score=53.87 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=23.9
Q ss_pred EcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 8 FGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 8 ~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.|++|||||| ++.+++.+ +...+..|.+|.
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~~ 31 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP 31 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCCc
Confidence 4999999998 66677777 467889998874
No 147
>PLN02842 nucleotide kinase
Probab=96.77 E-value=0.0026 Score=65.38 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=25.5
Q ss_pred EEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 7 VFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 7 I~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|.|++|||||| |+.|++.+ ++..|++++..+
T Consensus 2 I~G~PGSGKSTqa~~Lak~l---g~~hIs~gdLLR 33 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKF---GLVHISTGDLLR 33 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHh---CCCEEEccHHHH
Confidence 78999999998 77788777 467888888765
No 148
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.72 E-value=0.0036 Score=56.77 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=18.4
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.++|.|+||+||||| +|++.|.+
T Consensus 13 ~~~ivi~GpsG~GK~---tl~~~L~~ 35 (206)
T PRK14738 13 PLLVVISGPSGVGKD---AVLARMRE 35 (206)
T ss_pred CeEEEEECcCCCCHH---HHHHHHHh
Confidence 468999999999999 56666653
No 149
>PRK14529 adenylate kinase; Provisional
Probab=96.61 E-value=0.0068 Score=56.16 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=59.3
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCc---hhhhhh-----ccCCCCccccchhHHHHHHHHHhcCC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDR---TGRKEK-----GVTALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr---~~~~~~-----~~~~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
|.|.|++|||||| |+.|++.++ ...|++-+..+..- .+.... .-..+.|+..-.+.+.+.|...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~---- 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD---- 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc----
Confidence 6779999999998 888888875 45576666665310 111000 0112223333333333333211
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccch--hh-------hccCCEEEEEECCHHHHHHHhhcc
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDA--RV-------RELLDFSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~--~l-------r~~~D~~IyVD~~~evrl~rkI~R 138 (329)
+ ..-+|++|..--... .+ .-..|..|+++++.++-.+|-..|
T Consensus 76 --------------------~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R 126 (223)
T PRK14529 76 --------------------G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR 126 (223)
T ss_pred --------------------C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence 1 223666665432211 11 124799999999999999987666
No 150
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.48 E-value=0.0024 Score=60.85 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyhr 40 (329)
++|+|.|++|||||| +..++..+. ...|.+|++|.|..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 589999999999999 777777763 24799999998753
No 151
>COG4639 Predicted kinase [General function prediction only]
Probab=96.41 E-value=0.014 Score=51.29 Aligned_cols=126 Identities=20% Similarity=0.264 Sum_probs=66.8
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCCch-hhhhhccCCCCccccc---hhHHHHHHH-HHhcCC
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT-GRKEKGVTALDPRANN---FDLMYEQVK-AMKDGV 75 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~dr~-~~~~~~~~~~~Pea~d---~d~L~~~L~-~L~~G~ 75 (329)
|+.++.+.|.+|||||| +++.... .+.+|++||+-..-.. .-++ .-.-++ ++.+.+.+. .+.+|+
T Consensus 1 ~~~LvvL~G~~~sGKsT---~ak~n~~-~~~~lsld~~r~~lg~~~~~e------~sqk~~~~~~~~l~~~l~qrl~~Gk 70 (168)
T COG4639 1 MRILVVLRGASGSGKST---FAKENFL-QNYVLSLDDLRLLLGVSASKE------NSQKNDELVWDILYKQLEQRLRRGK 70 (168)
T ss_pred CceEEEEecCCCCchhH---HHHHhCC-CcceecHHHHHHHhhhchhhh------hccccHHHHHHHHHHHHHHHHHcCC
Confidence 88999999999999995 5555322 4778999998652100 0000 011122 344555553 444455
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE 155 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~ 155 (329)
-. ++|..+-+......+ ..+ ..--...++.|++|+|.+.+++|--.|+ | +=+++|+.++.
T Consensus 71 ~t---iidAtn~rr~~r~~l-----------~~L--a~~y~~~~~~ivfdtp~~~c~aRNk~~~---R-qv~~~VI~r~~ 130 (168)
T COG4639 71 FT---IIDATNLRREDRRKL-----------IDL--AKAYGYKIYAIVFDTPLELCLARNKLRE---R-QVPEEVIPRML 130 (168)
T ss_pred eE---EEEcccCCHHHHHHH-----------HHH--HHHhCCeEEEEEEeCCHHHHHHHhhccc---h-hCCHHHHHHHH
Confidence 32 122211111000000 000 1123445778999999999999822333 2 34677777664
Q ss_pred h
Q 048274 156 A 156 (329)
Q Consensus 156 ~ 156 (329)
+
T Consensus 131 r 131 (168)
T COG4639 131 R 131 (168)
T ss_pred H
Confidence 3
No 152
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.39 E-value=0.0063 Score=56.38 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=72.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHH-----HHHH--
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQ-----VKAM-- 71 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~-----L~~L-- 71 (329)
+.+|...|-+|.|||+ |+.|++.|. +..+-+++.-+|-|.-... .....+|+|..-+-..+++. |.++
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~--~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~ 89 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGA--PQDAEFFDPDNEEAKKLREQIAKEALEDLIE 89 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS---S-GGGGSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccc--ccccccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999 888888886 3478888888775420000 11233555543332233322 2222
Q ss_pred -hcCCceeccccccccCCCCCCc----ccC--CCcEEEEEccccccchhhhccCCEEEEEECCHHH---HHHHhhccccc
Q 048274 72 -KDGVSVEKPIYNHVTGLLDPPE----LIK--PPKILVIEGLHPMYDARVRELLDFSIYLDISNEV---KFAWKIQRDMT 141 (329)
Q Consensus 72 -~~G~~i~~P~Yd~~tg~~~~~~----~i~--p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~ev---rl~rkI~RD~~ 141 (329)
.+.+....-+||..+-+..... .+. +..++|+|-+-- ++++ +...+.+..-.
T Consensus 90 ~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~------------------D~~ii~~NI~~~~~~spD 151 (222)
T PF01591_consen 90 WLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICD------------------DPEIIERNIREKKQNSPD 151 (222)
T ss_dssp HHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---------------------HHHHHHHHHHHHTTSGG
T ss_pred HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeC------------------CHHHHHHHHHHHHcCCcc
Confidence 2222334456666554432211 111 245555552210 2322 33334433233
Q ss_pred ccCCchhhHHHHHhhcccchhhhcccc
Q 048274 142 ERGHSLESIKASIEARKPDFDAYIDPQ 168 (329)
Q Consensus 142 eRG~s~E~V~~~i~~r~pd~~~yI~Pq 168 (329)
-.|.++|++++.+.+|...|++..+|-
T Consensus 152 Y~~~~~e~A~~Df~~RI~~Ye~~YEpl 178 (222)
T PF01591_consen 152 YKGMDPEEAIEDFKKRIEHYEKVYEPL 178 (222)
T ss_dssp GTTS-HHHHHHHHHHHHHHHHTT----
T ss_pred cccCCHHHHHHHHHHHHHhhccccccc
Confidence 468999999998888888888876663
No 153
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.33 E-value=0.041 Score=51.35 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC---eEEEEcc-ceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCcee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT---TTVICLD-DYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVE 78 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~---v~vI~~D-dyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~ 78 (329)
+|.|+|-++||||| |..|...|.+.+ +..|.-| +++-. +. +.++ ++-+-..+...|..-.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~-~n-------s~y~-~s~~EK~lRg~L~S~v------ 67 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIE-KN-------SNYG-DSQAEKALRGKLRSAV------ 67 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCC-Cc-------cccc-ccHHHHHHHHHHHHHH------
Confidence 68899999999999 889999997642 2222222 22211 10 0010 1111122333332211
Q ss_pred ccccccccCCCCCCcccCCCcEEEEEcccc---ccc-----hhhhccCCEEEEEECCHHHHHHHhhcc-cccccCCchhh
Q 048274 79 KPIYNHVTGLLDPPELIKPPKILVIEGLHP---MYD-----ARVRELLDFSIYLDISNEVKFAWKIQR-DMTERGHSLES 149 (329)
Q Consensus 79 ~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~---l~~-----~~lr~~~D~~IyVD~~~evrl~rkI~R-D~~eRG~s~E~ 149 (329)
-..+...+|||++.+.= |.- .+.....--.||.++|.+.+++|--.| +-.+-||++|-
T Consensus 68 -------------~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~ 134 (281)
T KOG3062|consen 68 -------------DRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDEL 134 (281)
T ss_pred -------------HhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHH
Confidence 11344567777776531 110 111122345689999999999995444 33457898754
Q ss_pred HHH
Q 048274 150 IKA 152 (329)
Q Consensus 150 V~~ 152 (329)
..+
T Consensus 135 le~ 137 (281)
T KOG3062|consen 135 LEA 137 (281)
T ss_pred HHH
Confidence 433
No 154
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.26 E-value=0.0026 Score=60.11 Aligned_cols=108 Identities=9% Similarity=0.080 Sum_probs=57.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceecC-------Cchhhhhh--ccCCC---CccccchhHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHSL-------DRTGRKEK--GVTAL---DPRANNFDLMYEQ 67 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr~-------dr~~~~~~--~~~~~---~Pea~d~d~L~~~ 67 (329)
++|||+|++|+|||| ...|...+.+ .+|.|++.|-=-.. ||.-|.+. .-+.| -|..-.+..+...
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~ 109 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRA 109 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHH
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHh
Confidence 689999999999998 6667776654 37999999974322 22222111 00000 0111112222211
Q ss_pred HHHHhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccch-hhhccCCEEEEEECCH
Q 048274 68 VKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDA-RVRELLDFSIYLDISN 128 (329)
Q Consensus 68 L~~L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~-~lr~~~D~~IyVD~~~ 128 (329)
...... -...-.-|+||||-.-....+ .+.+.+|..++|-.|.
T Consensus 110 t~~~v~------------------ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg 153 (266)
T PF03308_consen 110 TRDAVR------------------LLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG 153 (266)
T ss_dssp HHHHHH------------------HHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS
T ss_pred HHHHHH------------------HHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC
Confidence 111000 001124789999988766633 6889999999997753
No 155
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.20 E-value=0.0034 Score=50.17 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSL 41 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~ 41 (329)
...+.|.|++|||||| +..+++.+... .+..++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence 4578999999999999 88888888776 4777777766543
No 156
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.18 E-value=0.0039 Score=54.29 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.++.+.|++|||||| +..++..+... .+.+|++|.|.
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 378999999999999 77788777543 68899999864
No 157
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.12 E-value=0.0048 Score=59.23 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce--ecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY--HSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy--hr~ 41 (329)
+|.|+|++|||||+ +..|++.+ +..+|++|+. |+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~---~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL---NAEIISVDSMQIYKG 38 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC---CCcEEEechhheeee
Confidence 58999999999996 55555555 4678999995 554
No 158
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.10 E-value=0.0044 Score=60.71 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
.+|||+|++|||||| +..++..|... ++.||+.|.--.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 589999999999999 77777777653 699999998543
No 159
>PLN02840 tRNA dimethylallyltransferase
Probab=96.05 E-value=0.0041 Score=62.63 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
+.+|.|+|++|||||| +..|++.++ ..+|++|+++.|
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~---~~iis~Ds~qvY 58 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLN---GEIISADSVQVY 58 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCC---CCeEecccccee
Confidence 4589999999999997 777777774 458999997554
No 160
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.01 E-value=0.0044 Score=59.86 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
.+|.|+|++|||||| |..||+.|+. ..+|++|.+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~~--~~vi~~D~~r 128 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLGI--RSVIGTDSIR 128 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHH
Confidence 489999999999999 8889988853 3689999986
No 161
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.00 E-value=0.0064 Score=54.60 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.++.|.|++|||||| +..+...+...++.+|+.|+|-..
T Consensus 16 ~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 16 TLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred EEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 478899999999998 555555553457999999998553
No 162
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.023 Score=52.16 Aligned_cols=28 Identities=7% Similarity=-0.092 Sum_probs=24.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
-..|.|-|.-|||||| ++.+++.|.+.+
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g 31 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERG 31 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3579999999999999 888999998765
No 163
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.95 E-value=0.0055 Score=58.27 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=31.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
++|+++|++|+|||| +..+|..+... .|.+|++|-|..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 589999999999999 77788877654 699999998643
No 164
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.93 E-value=0.0057 Score=61.85 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=32.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|+++|+.|||||| +..||..|... +|.+|++|.|-
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 589999999999999 88888888643 79999999875
No 165
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.92 E-value=0.0038 Score=58.25 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=24.8
Q ss_pred EEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 7 VFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 7 I~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
|.|+.|||||| ++.+++.+... .+.+|.+|-=
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 68999999999 89999998754 7999999964
No 166
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.056 Score=52.73 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=69.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC-------------CchhhhhhccCCCCccccchh-----H
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL-------------DRTGRKEKGVTALDPRANNFD-----L 63 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~-------------dr~~~~~~~~~~~~Pea~d~d-----~ 63 (329)
.||.|.|.+|||||. +--||..++ .-+|..|..=.| ++.+.....+.+++|+. ++. .
T Consensus 8 KVvvI~G~TGsGKSrLaVdLA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~-e~t~~~F~~ 83 (348)
T KOG1384|consen 8 KVVVIMGATGAGKSRLAVDLATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEA-EYTAGEFED 83 (348)
T ss_pred eEEEEecCCCCChhhhHHHHHHhCC---ceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHh-hccHHHHHH
Confidence 589999999999996 555666664 345555554222 12223333566778876 332 2
Q ss_pred HH-HHHHHHhcCC--cee---ccccccc--cCCCCCCc-ccCCCcEEEEEccccccchhhhccCC-EEEEEECCHHHHHH
Q 048274 64 MY-EQVKAMKDGV--SVE---KPIYNHV--TGLLDPPE-LIKPPKILVIEGLHPMYDARVRELLD-FSIYLDISNEVKFA 133 (329)
Q Consensus 64 L~-~~L~~L~~G~--~i~---~P~Yd~~--tg~~~~~~-~i~p~~vlIvEGl~~l~~~~lr~~~D-~~IyVD~~~evrl~ 133 (329)
+. +++..+.+.+ +|. -+-|.+. .+++++-. ++.+. .|.. ..++ .+| ..+|||++..+-.+
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~-----~g~~---pS~l--ryd~c~lWlda~~~VL~~ 153 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSN-----TGSI---PSEL--RYDCCFLWLDADQAVLFE 153 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCccccc-----CCCC---Cccc--ccceEEEEEecchHHHHH
Confidence 22 3455555422 221 1122221 12222200 00000 1111 0111 344 57899999998888
Q ss_pred Hhhcc--cccccCCchhhHHHHH
Q 048274 134 WKIQR--DMTERGHSLESIKASI 154 (329)
Q Consensus 134 rkI~R--D~~eRG~s~E~V~~~i 154 (329)
+.-+| +|.+.|.- |++.+.+
T Consensus 154 ~l~~RVD~Ml~~Gl~-eE~~~f~ 175 (348)
T KOG1384|consen 154 RLDKRVDDMLESGLL-EELRDFY 175 (348)
T ss_pred HHHHHHHHHHHcchH-HHHHHHh
Confidence 85555 46677774 4444433
No 167
>PRK13974 thymidylate kinase; Provisional
Probab=95.91 E-value=0.016 Score=52.69 Aligned_cols=26 Identities=15% Similarity=-0.083 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
.+|++-|+.|||||| ++.+++.|...
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~ 30 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLPSS 30 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999 88888888643
No 168
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.85 E-value=0.0076 Score=53.76 Aligned_cols=35 Identities=9% Similarity=-0.098 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLD 36 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~D 36 (329)
..+++|+|++|||||| ...+...|... ++.+|.-+
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 4689999999999999 77788888654 46777643
No 169
>PRK13768 GTPase; Provisional
Probab=95.83 E-value=0.0075 Score=56.55 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=31.0
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
|-++|.|+|+.|||||| +..++..|.. .++.+|++|-
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 67899999999999999 7777777754 3788999885
No 170
>PRK12338 hypothetical protein; Provisional
Probab=95.77 E-value=0.0056 Score=59.62 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.|+|++|||||| |..+|..|+ +..+..+|+.+
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~---~~~~~~tD~~r 40 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLN---IKHLIETDFIR 40 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CeEEccChHHH
Confidence 489999999999998 777777774 44454444443
No 171
>PRK13976 thymidylate kinase; Provisional
Probab=95.72 E-value=0.016 Score=53.02 Aligned_cols=25 Identities=8% Similarity=-0.106 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
+|.|-|..|||||| ++.|++.|...
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999 89999999763
No 172
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.72 E-value=0.033 Score=56.56 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=24.7
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
|.|+|++|+|||| |+.||..+.+.+-.|=.|
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 7899999999999 888999887765444333
No 173
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.70 E-value=0.0097 Score=53.49 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+|=++|.||||||| |+.|.+.|.+. .+.++++|.-
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 478899999999999 88888888765 5777777764
No 174
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.69 E-value=0.0082 Score=58.41 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
.+|++.|++|||||| +..+|..+... .|.++++|-|..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 589999999999999 77888888644 699999998653
No 175
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.68 E-value=0.005 Score=54.94 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
+||-+-|+|+||||| |+.|++.|. .....+..|+|..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChHHh
Confidence 689999999999998 777777774 3568899999987
No 176
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.0092 Score=59.64 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=31.4
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
.++|+++|++|||||| +..+|..+.. ..|.+|++|.|-
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 4689999999999999 7777777643 369999999884
No 177
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.64 E-value=0.031 Score=49.60 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=40.9
Q ss_pred EEEEccccccchhhhccCC--EEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh---hcccchhhhccc----cCCC
Q 048274 101 LVIEGLHPMYDARVRELLD--FSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE---ARKPDFDAYIDP----QKQY 171 (329)
Q Consensus 101 lIvEGl~~l~~~~lr~~~D--~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~---~r~pd~~~yI~P----qk~~ 171 (329)
+|+.|--+.+ +-.-.+ ++|||.+|.+.|.+|-++|. |.|.+++.+.+. +.+-.|-+++.. ....
T Consensus 98 ~Vi~GR~a~~---il~~~~~~l~V~i~A~~~~Rv~ri~~~~----~~s~~~A~~~i~~~D~~R~~~~~~~~~~~~~d~~~ 170 (179)
T PF13189_consen 98 CVIVGRCANY---ILRDIPNVLHVFIYAPLEFRVERIMERE----GISEEEAEKLIKKEDKRRRAYYKYYTGIDWGDPSN 170 (179)
T ss_dssp EEEESTTHHH---HTTT-TTEEEEEEEE-HHHHHHHHHHHH----T--HHHHHHHHHHHHHHHHHHHHHH-SS-TTBGGG
T ss_pred EEEEecCHhh---hhCCCCCeEEEEEECCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchh
Confidence 5555666555 333343 99999999999999987773 788887776653 334444444321 2345
Q ss_pred CcEEEec
Q 048274 172 ADAVIEV 178 (329)
Q Consensus 172 ADiVI~~ 178 (329)
-|+||+.
T Consensus 171 YDLvint 177 (179)
T PF13189_consen 171 YDLVINT 177 (179)
T ss_dssp -SEEEEE
T ss_pred ceEEEeC
Confidence 5666664
No 178
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.59 E-value=0.0087 Score=57.70 Aligned_cols=107 Identities=13% Similarity=0.109 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhhccCCCCccccchhH--HHHHHHHHhcCCce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDL--MYEQVKAMKDGVSV 77 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~--L~~~L~~L~~G~~i 77 (329)
.+|||+|.+|+|||| ...|...|... +|+||.-|-=-... =.++-=|+ |.++-.. .| ..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T-------------GGsiLGDRiRM~~~~~~--~~-vF 115 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT-------------GGSILGDRIRMQRLAVD--PG-VF 115 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC-------------CccccccHhhHHhhccC--CC-eE
Confidence 489999999999998 66677777654 69999999743221 11111111 1111000 00 00
Q ss_pred eccccccccCC---CCC--Cc---cc--CCCcEEEEEccccccch-hhhccCCEEEEEECC
Q 048274 78 EKPIYNHVTGL---LDP--PE---LI--KPPKILVIEGLHPMYDA-RVRELLDFSIYLDIS 127 (329)
Q Consensus 78 ~~P~Yd~~tg~---~~~--~~---~i--~p~~vlIvEGl~~l~~~-~lr~~~D~~IyVD~~ 127 (329)
-.|. ...|. +.. +. -+ -..|+||||-.-....+ .+.+.+|..++|-+|
T Consensus 116 iRs~--~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 116 IRSS--PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred Eeec--CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 0000 00111 110 11 11 25899999988877643 688999999999886
No 179
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.01 Score=59.34 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc------cCCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI------SDTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~------~~~v~vI~~Ddyh 39 (329)
.+|.+.|++|+|||| +..+|..+. ...|.+|++|.|-
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 589999999999999 777888774 2379999999884
No 180
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.53 E-value=0.011 Score=45.04 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
++.++|..|+|||| +..++..|.+.+..++..|||-..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~iiv 39 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLI 39 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCEEEE
Confidence 47889999999999 888999998766777777776543
No 181
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.52 E-value=0.013 Score=51.79 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICL 35 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~ 35 (329)
|-.|++|+|.++||||| ...+...|.+. +|++|--
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 67899999999999999 88888888765 4555543
No 182
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.51 E-value=0.0078 Score=58.16 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=26.9
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr 40 (329)
..+|.|+||+|||||. ||-.|...+..+|+.|+.--
T Consensus 4 ~~ii~I~GpTasGKS~---LAl~LA~~~~eIIsaDS~Qv 39 (300)
T PRK14729 4 NKIVFIFGPTAVGKSN---ILFHFPKGKAEIINVDSIQV 39 (300)
T ss_pred CcEEEEECCCccCHHH---HHHHHHHhCCcEEeccHHHH
Confidence 3589999999999995 44444333458999999843
No 183
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.50 E-value=0.012 Score=58.96 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=44.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEccceecCCchhhhhh--ccCCCCccccchhHHHHHHHHHhc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYHSLDRTGRKEK--GVTALDPRANNFDLMYEQVKAMKD 73 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyhr~dr~~~~~~--~~~~~~Pea~d~d~L~~~L~~L~~ 73 (329)
.++|.+.||+|.|||| -..||..+. ..+|.+|++|.|-----.+++.. .+.-----+.+...|.+.+..+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3689999999999999 344555544 34899999999865322333221 111111235556666667766665
No 184
>PRK06761 hypothetical protein; Provisional
Probab=95.50 E-value=0.012 Score=56.31 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=24.9
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
|.++|.|+|++|||||| ++.+++.|...+
T Consensus 2 m~~lIvI~G~~GsGKTTla~~L~~~L~~~g 31 (282)
T PRK06761 2 MTKLIIIEGLPGFGKSTTAKMLNDILSQNG 31 (282)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCcCc
Confidence 57899999999999999 888888887543
No 185
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.50 E-value=0.017 Score=50.91 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=29.6
Q ss_pred cCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhcccchhhhc
Q 048274 117 LLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYI 165 (329)
Q Consensus 117 ~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI 165 (329)
.=|+.+|+|+++++.++|.-.|+. +....++-...+.+..-.|.+..
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~y~~l~ 164 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGE--KDDEEEEDLEYLRRVREAYLELA 164 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSS--TTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCc--cchHHHHHHHHHHHHHHHHHHHH
Confidence 449999999999999999888864 12223333344444444455443
No 186
>PLN02165 adenylate isopentenyltransferase
Probab=95.50 E-value=0.0082 Score=58.80 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
.+|+|.|++|||||+ |..||..++ ..+|++|..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence 489999999999997 666666664 468999988
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.01 Score=59.66 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
++|+|.|+.|||||| +..||..|... .+.+|++|-|-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 589999999999999 77788777643 69999999875
No 188
>PRK10867 signal recognition particle protein; Provisional
Probab=95.46 E-value=0.011 Score=59.97 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddyh 39 (329)
.+|.++|+.|||||| +..+|..|.. ..|.+|++|.|-
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 589999999999999 7788887753 369999999864
No 189
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.013 Score=52.04 Aligned_cols=29 Identities=10% Similarity=-0.097 Sum_probs=24.6
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
|.--|+|+|++|||||| +..+++.|...+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 34569999999999999 889999997654
No 190
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.28 E-value=0.014 Score=58.96 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddy 38 (329)
+++++.|++|+|||| +..+|..+. ...|.+|++|.|
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 489999999999999 667776664 247999999997
No 191
>PRK14974 cell division protein FtsY; Provisional
Probab=95.26 E-value=0.013 Score=57.44 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
++|+++|++|||||| +..+|..|... .|.++++|-|-
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 589999999999999 77888888654 57888888763
No 192
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.20 E-value=0.014 Score=52.91 Aligned_cols=34 Identities=9% Similarity=-0.083 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
.+|.|+|.+|||||| |..+++.++ -..++.+|-+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~--~~~~~~~D~~ 38 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRA--IDIVLSGDYL 38 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CeEEehhHHH
Confidence 589999999999998 777777763 2345666643
No 193
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.15 E-value=0.017 Score=55.13 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=30.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Dd 37 (329)
|+ +|+|+|.+|||||| +..|+..|... .|.+|-.|.
T Consensus 1 M~-~i~i~G~~gSGKTTLi~~Li~~L~~~G~V~~IKhd~ 38 (274)
T PRK14493 1 MK-VLSIVGYKATGKTTLVERLVDRLSGRGRVGTVKHMD 38 (274)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 54 79999999999999 77888888755 688888876
No 194
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.014 Score=53.89 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
++|-++|.+|||||| |+.||+.|......+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 367899999999999 9999999987754444443
No 195
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.08 E-value=0.018 Score=55.27 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
..+|+|+|++|||||| +..++..+... .+.+|+.|....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP 75 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3589999999999998 77777766543 799999997653
No 196
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.07 E-value=0.019 Score=47.32 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCC
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLD 42 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~d 42 (329)
.+++|.|+||||||| +++.+. .+-..+..||....+
T Consensus 16 e~v~I~GpSGsGKST---Ll~~l~-~G~i~~~g~di~~~~ 51 (107)
T cd00820 16 VGVLITGDSGIGKTE---LALELI-KRKHRLVGDDNVEIR 51 (107)
T ss_pred EEEEEEcCCCCCHHH---HHHHhh-CCeEEEeeEeHHHhh
Confidence 579999999999995 555554 344567778776543
No 197
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.00 E-value=0.016 Score=59.36 Aligned_cols=44 Identities=9% Similarity=-0.000 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEccceecCCchhhh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDDYHSLDRTGRK 47 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Ddyhr~dr~~~~ 47 (329)
.+||.||||||||| ++.+...... .+...+++=|++.||+.+..
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 58999999999995 4444444332 36777777788888876643
No 198
>PLN02748 tRNA dimethylallyltransferase
Probab=95.00 E-value=0.017 Score=59.16 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce--ecC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY--HSL 41 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy--hr~ 41 (329)
..+|.|.|++|||||+ |..||..+ ++.+|++|+. |+.
T Consensus 22 ~~~i~i~GptgsGKs~la~~la~~~---~~eii~~DsmQVYrg 61 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKLAVDLASHF---PVEIINADSMQVYSG 61 (468)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---CeeEEcCchheeeCC
Confidence 3589999999999997 66666665 4789999984 553
No 199
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.98 E-value=0.021 Score=51.73 Aligned_cols=39 Identities=18% Similarity=0.064 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr~ 41 (329)
..|+|+|+.|||||| .+.+.+.+... ++.++..|-++..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~ 42 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQE 42 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChh
Confidence 368999999999998 66677776543 6778887776643
No 200
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.98 E-value=0.018 Score=58.10 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc-c--cCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL-I--SDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L-~--~~~v~vI~~Ddyhr 40 (329)
.+|+++|++|||||| +..+|..+ . ...|.++++|-|-.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 589999999999999 77777644 2 23699999998643
No 201
>PRK04296 thymidine kinase; Provisional
Probab=94.97 E-value=0.051 Score=48.61 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=23.6
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcc-c-CCeEEE
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLI-S-DTTTVI 33 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~-~-~~v~vI 33 (329)
|-.++.|+|++|||||| +..++..+. . ..|.++
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 66789999999999999 544444443 2 356666
No 202
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.94 E-value=0.017 Score=49.46 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
.+|+|+|+++||||| +..|.+.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 479999999999999 888888887553
No 203
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.92 E-value=0.02 Score=57.89 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc---cCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI---SDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~---~~~v~vI~~Ddy 38 (329)
.+|.++|++|||||| +..+|..|. +.+|.+|++|-|
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 589999999999999 777888874 247999999984
No 204
>PLN02772 guanylate kinase
Probab=94.92 E-value=0.1 Score=52.33 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=18.1
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
+++|.|+|||||||| +|.+.|.+
T Consensus 135 ~k~iVlsGPSGvGKs---TL~~~L~~ 157 (398)
T PLN02772 135 EKPIVISGPSGVGKG---TLISMLMK 157 (398)
T ss_pred CcEEEEECCCCCCHH---HHHHHHhh
Confidence 468999999999999 55555543
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.91 E-value=0.023 Score=56.22 Aligned_cols=37 Identities=5% Similarity=-0.051 Sum_probs=29.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC------CeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD------TTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~------~v~vI~~Ddy 38 (329)
|++++|.||+|||||| |+.|++.|... ....+..+.+
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 5789999999999999 88888888652 5667777553
No 206
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.87 E-value=0.021 Score=57.99 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+|.++|+.|||||| +..+|..|... .|.+|++|.|
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 578999999999999 78888888754 6999999986
No 207
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.87 E-value=0.025 Score=52.98 Aligned_cols=37 Identities=24% Similarity=0.118 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|+.=-.|.||+|||||| +.-..+.|++. .+.++.+|-
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP 40 (290)
T ss_pred CCcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence 44445789999999999 77777777643 689999995
No 208
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.84 E-value=0.023 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=31.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|.+||+|+|=.|+|||| +.-||..|... +|.+|++|-
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 88899999999999999 77788887643 699999993
No 209
>PF13173 AAA_14: AAA domain
Probab=94.81 E-value=0.024 Score=47.11 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=29.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc-cCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI-SDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~-~~~v~vI~~Ddyhr 40 (329)
++++.|.|+-++|||| +..+++.+. ..++..|++|+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 5789999999999998 656665554 44688888887543
No 210
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.80 E-value=0.019 Score=49.98 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLD 36 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~D 36 (329)
||+|+|.+|||||| +..++..|... ++++|-.|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 68999999999999 77788877644 68888766
No 211
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.79 E-value=0.027 Score=50.60 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=28.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr~ 41 (329)
.|+|+||||||||| -+.+|+..... +.....+-++--+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~ 70 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc
Confidence 58999999999997 55566666543 7777888887654
No 212
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.73 E-value=0.046 Score=55.01 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGR 46 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~ 46 (329)
.+||.|-||||||| +..+.+.+.+.+-..+.+-+....++++|
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~m 358 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEM 358 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhh
Confidence 58999999999999 88899998877777777777765555444
No 213
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.71 E-value=0.017 Score=49.06 Aligned_cols=22 Identities=9% Similarity=-0.071 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+|+|.|++|||||| ++.+++.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999996 55555544
No 214
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.035 Score=52.07 Aligned_cols=36 Identities=3% Similarity=-0.072 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyh 39 (329)
++||.|.||||||| ++.++...... +-..+.+....
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 68999999999997 55555555432 45555554444
No 215
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.67 E-value=0.051 Score=56.50 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Ddyhr 40 (329)
.+|+|.|++|+|||| +..|+..+.. ..+.+|++|.|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 489999999999999 6677766532 3699999998764
No 216
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.37 Score=43.03 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=42.2
Q ss_pred cCCCcEEEEEccccccchhhhccCC--EEEEEECCHHHHHHHhhcccccccCC-chhhHHHHHhhc
Q 048274 95 IKPPKILVIEGLHPMYDARVRELLD--FSIYLDISNEVKFAWKIQRDMTERGH-SLESIKASIEAR 157 (329)
Q Consensus 95 i~p~~vlIvEGl~~l~~~~lr~~~D--~~IyVD~~~evrl~rkI~RD~~eRG~-s~E~V~~~i~~r 157 (329)
+...+++|+-|--+.. |..+..|- ..+.+.+++++-.+|..+| |+ |.|+|.+++.+.
T Consensus 91 l~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~R-----GREs~eeI~aRL~R~ 150 (192)
T COG3709 91 LAAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAER-----GRESREEILARLARA 150 (192)
T ss_pred HhCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHh-----ccCCHHHHHHHHHhh
Confidence 3457899999988776 65665553 4577888999988887665 54 678898888643
No 217
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.56 E-value=0.03 Score=50.40 Aligned_cols=25 Identities=12% Similarity=-0.045 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+|.|+|++|||||| .+.+++.+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 379999999999998 5666666653
No 218
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.55 E-value=0.025 Score=58.11 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc-c---CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI-S---DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~-~---~~v~vI~~Ddyh 39 (329)
.|+++.|++|+|||| +..|+..+. . ..|.+|.+|.|.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 589999999999999 777887763 1 268899998753
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.026 Score=56.20 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyh 39 (329)
.++++.|++|+|||| +..|+..+. ...+.+|++|.|-
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 489999999999999 666766542 2468999999984
No 220
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.54 E-value=0.022 Score=49.15 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
+|++.|..|||||| +..++..+... ++.++.+|-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 48999999999999 77777777543 688888884
No 221
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.51 E-value=0.033 Score=48.88 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
++|+|+|.+|||||| +..+...|... ++.+|-.|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~ 39 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDH 39 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 479999999999999 78888888654 467776554
No 222
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=94.45 E-value=0.025 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.++|.|+||+|||||- |-.||+.+ +..||++|+.--|
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~---~~eIIs~DSmQvY 40 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRL---GGEIISLDSMQVY 40 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHc---CCcEEecchhhhc
Confidence 4689999999999995 55555555 4679999998443
No 223
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.41 E-value=0.046 Score=56.72 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Dd 37 (329)
.++|.|++|||||| ++.++..+... +...+..-+
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 68999999999997 66666666443 444444433
No 224
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.41 E-value=0.03 Score=53.08 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEccceecCCchh
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDDYHSLDRTG 45 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Ddyhr~dr~~ 45 (329)
.+++|.||.|||||| -+.+++.|.. .+...++.-+.+.+..++
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHH
Confidence 379999999999998 7778887764 366677777777654444
No 225
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.39 E-value=0.019 Score=49.50 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=18.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|+|+|+.|||||| ++.|++. ++.++ +.|.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v--~E~ar 32 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV--PEYAR 32 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE----TTH
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE--eecHH
Confidence 8999999999996 5555544 66655 66655
No 226
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.32 E-value=0.033 Score=46.44 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
++.|+|++|+|||| +..++..+.. ..+..++.+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 47899999999998 6667666653 356667666543
No 227
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.30 E-value=0.039 Score=45.78 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=28.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|.++|.+|+|||| +..+++.|... ++.+|++|-
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 7899999999999 78888888643 688899887
No 228
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=94.23 E-value=0.13 Score=54.83 Aligned_cols=39 Identities=5% Similarity=0.030 Sum_probs=30.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
..+|.+.|-.|+|||| |+.|++.|.-. .+.++..|.|-+
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr 256 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRR 256 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHh
Confidence 3578999999999999 88888888643 566666666654
No 229
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.16 E-value=0.041 Score=54.90 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC--eEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT--TTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~--v~vI~~Dd 37 (329)
++.|.||..||||| +..|+|.+.+.+ +.+|++|-
T Consensus 75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv 111 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV 111 (398)
T ss_pred EEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence 78999999999999 889999998754 99999983
No 230
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.16 E-value=0.039 Score=44.56 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
..+.|.|++|+|||+ ++.+++.+... .+..+....++
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 468899999999998 77777777422 34444444443
No 231
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.10 E-value=0.036 Score=44.98 Aligned_cols=33 Identities=9% Similarity=-0.096 Sum_probs=23.4
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
|.|.|++|+|||+ ++.+++.++. .+..+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-PFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-EEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-cccccccccc
Confidence 5799999999998 8888888742 2333444443
No 232
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.07 E-value=0.042 Score=50.97 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc---C--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS---D--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~---~--~v~vI~~Ddy 38 (329)
.++.|.|||||||| |+.++++. . +-..|..++-
T Consensus 29 evv~iiGpSGSGKS---TlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 29 EVVVIIGPSGSGKS---TLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred CEEEEECCCCCCHH---HHHHHHHCCcCCCCceEEECCEec
Confidence 38999999999999 56666543 2 4545555333
No 233
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.04 E-value=0.045 Score=50.90 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHhccc----C-CeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLIS----D-TTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~----~-~v~vI~~Ddyhr~ 41 (329)
+++|.|||||||| ||-+.++. . +...|+.-|....
T Consensus 33 ~vaI~GpSGSGKS---TLLniig~ld~pt~G~v~i~g~d~~~l 72 (226)
T COG1136 33 FVAIVGPSGSGKS---TLLNLLGGLDKPTSGEVLINGKDLTKL 72 (226)
T ss_pred EEEEECCCCCCHH---HHHHHHhcccCCCCceEEECCEEcCcC
Confidence 7999999999999 56555542 2 4555666455544
No 234
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.99 E-value=0.061 Score=47.77 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=41.3
Q ss_pred CcEEEEEEcCCCCCCCc--HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHH
Q 048274 1 MRRLTSVFGGAAEPPKG--GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQV 68 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST--a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L 68 (329)
|.++.-+.|+.|||||| +..+.+.+. ++.+|..|.... .++..+|.+.+.+.-+..+
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~--~~~~VN~D~iA~---------~i~p~~p~~~~i~A~r~ai 59 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLP--GIVFVNADEIAA---------QISPDNPTSAAIQAARVAI 59 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcC--CeEEECHHHHhh---------hcCCCCchHHHHHHHHHHH
Confidence 66777888999999999 666666665 677788776543 4567788888877655444
No 235
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.96 E-value=0.041 Score=49.75 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
|+|+|+|-.|+|||| +.-||..|... +|.+|++|--
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 579999999999999 77788888654 6999999953
No 236
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.94 E-value=0.051 Score=50.98 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=32.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddyhr 40 (329)
|.++|+|+|-.|+|||| +.-||..|.. .+|.+|.+|--..
T Consensus 1 M~~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~ 44 (275)
T PRK13233 1 MTRKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKAD 44 (275)
T ss_pred CceEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcC
Confidence 77899999999999999 7777878863 3799999998654
No 237
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=93.87 E-value=0.068 Score=49.50 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
||.-+.+.||.|||||| ++.+.+.-. +..+-++.+|-
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 57778899999999999 666544433 23688888885
No 238
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.86 E-value=0.044 Score=48.64 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+..++|+|++|||||| .+.++..+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3579999999999998 6667766654
No 239
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.85 E-value=0.042 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+|.|+|++|||||| |..++..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 58999999999997 666666553
No 240
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.82 E-value=0.065 Score=55.36 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.|+|+|++|||||| .+.++..+..
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~ 384 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEP 384 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 68999999999997 6666665543
No 241
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.81 E-value=0.052 Score=54.86 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc----ccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL----ISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L----~~~~v~vI~~Ddyhr 40 (329)
.+|++.|++|+|||| ...|+..+ ....+.+|+.|.|--
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 489999999999999 56666543 234688899988654
No 242
>PF05729 NACHT: NACHT domain
Probab=93.79 E-value=0.038 Score=46.53 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
|++.|.|..|+|||| +..++..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhc
Confidence 578999999999999 77777777654
No 243
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.79 E-value=0.072 Score=55.41 Aligned_cols=32 Identities=13% Similarity=-0.075 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
.++|.|++|||||| ++.+++.+...+-..+..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g 410 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFLPYQGSLKING 410 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECC
Confidence 68999999999997 666666662224333433
No 244
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.76 E-value=0.042 Score=51.52 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|+|+|.|-.|+|||| +.-+|..|... +|.+|++|-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~ 38 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDP 38 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999 77788888654 699999984
No 245
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.72 E-value=0.078 Score=47.81 Aligned_cols=37 Identities=11% Similarity=-0.062 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Ddyh 39 (329)
++|+++|..|||||| .+.+.+.+.. ..+.++..|.+.
T Consensus 23 ~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~ 61 (207)
T TIGR00073 23 VVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT 61 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 579999999999998 5556555443 478888888653
No 246
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=93.69 E-value=0.047 Score=56.62 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Dd 37 (329)
++||.|.||||||| ++.++..+... +..+++..+
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 78999999999998 77777777553 566676666
No 247
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.65 E-value=0.062 Score=51.74 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddy 38 (329)
.+|+|.|++|||||| .+.+.+.|... ++.||..|-.
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~ 142 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ 142 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcC
Confidence 479999999999998 66667776543 7999988864
No 248
>PRK07933 thymidylate kinase; Validated
Probab=93.64 E-value=0.054 Score=49.47 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
+|.|-|..|||||| ++.|++.|...+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g 28 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARG 28 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 69999999999999 899999998654
No 249
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.62 E-value=0.061 Score=50.88 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
.+|.|+|++|||||| .+.+.+.+......++..+|
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEd 116 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVED 116 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECC
Confidence 479999999999998 55555555433333444443
No 250
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.44 E-value=0.077 Score=47.88 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666554
No 251
>PF13245 AAA_19: Part of AAA domain
Probab=93.40 E-value=0.068 Score=41.07 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCc--HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG--GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST--a~~la~~L 25 (329)
.+..|.||+|||||+ ++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999996 55566665
No 252
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.38 E-value=0.077 Score=48.29 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Ddyhr 40 (329)
.+++|.|+||||||| -+-+|..... .+-..|...|--.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~ 65 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA 65 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc
Confidence 479999999999997 4555555433 2566677666543
No 253
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.35 E-value=0.063 Score=52.17 Aligned_cols=37 Identities=5% Similarity=0.034 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
.++||.|-||||||| ++.+...|...+..+.++.=++
T Consensus 32 E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f 69 (316)
T COG0444 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF 69 (316)
T ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEE
Confidence 479999999999999 8888888864444444443333
No 254
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.34 E-value=0.056 Score=47.99 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
++|.|.||..||||| ++.||+.++.
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCC
Confidence 579999999999998 8888888864
No 255
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.29 E-value=0.062 Score=48.87 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=25.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc-cCC--eEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI-SDT--TTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~-~~~--v~vI~~Dd 37 (329)
++=+||+|.+|||||+ +..+...+. ..+ +.|++...
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 4558999999999999 666666665 444 44554433
No 256
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.082 Score=47.46 Aligned_cols=23 Identities=4% Similarity=-0.088 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999997 666666554
No 257
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.28 E-value=0.056 Score=48.46 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 379999999999997 666666554
No 258
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.25 E-value=0.088 Score=47.51 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
..++.|+|++|||||| +..++..+.. .++..|++|.-
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4689999999999998 6555554432 36888887743
No 259
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.16 E-value=0.079 Score=53.53 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.||-..|-.|||||| |..||+.|... .+.++++|-|-
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 478999999999999 88999999754 79999999763
No 260
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.13 E-value=0.069 Score=50.13 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
=++|+|+|=.|+|||| +.-||..|... +|.+|.+|--..
T Consensus 1 ~~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~ 42 (273)
T PRK13232 1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKAD 42 (273)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccc
Confidence 0568888999999999 76777777643 799999998654
No 261
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.09 E-value=0.076 Score=46.97 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEE
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVI 33 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI 33 (329)
++.|+||+|||||+ |..++... ...+..+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-~~~~~y~ 30 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-GGPVTYI 30 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCCeEEE
Confidence 47899999999997 55554442 2244444
No 262
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.09 E-value=0.073 Score=57.48 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc----cCCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI----SDTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~----~~~v~vI~~Ddyh 39 (329)
.||++.|++|+|||| ...|+..+. ...+.+|+.|.|-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 589999999999999 667776662 1368999999764
No 263
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.06 E-value=0.058 Score=47.67 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555555554
No 264
>PLN02924 thymidylate kinase
Probab=93.05 E-value=0.061 Score=49.58 Aligned_cols=30 Identities=10% Similarity=-0.157 Sum_probs=25.3
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeE
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTT 31 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~ 31 (329)
-.+|.|-|..|||||| ++.|++.|...+..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~ 46 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVA 46 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4589999999999999 89999999865433
No 265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.98 E-value=0.1 Score=47.18 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+++|.|++|||||| .+.++..+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 379999999999997 6666665543
No 266
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=92.98 E-value=0.069 Score=51.93 Aligned_cols=23 Identities=4% Similarity=-0.023 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
++||.|++|||||| ++.++..+.
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 79999999999998 777777764
No 267
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.93 E-value=0.077 Score=52.44 Aligned_cols=33 Identities=6% Similarity=-0.175 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICL 35 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~ 35 (329)
.+|+|+|.+|||||| +..+...|... +|.+|..
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~~~V~~ik~ 40 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSERFSVGYYKH 40 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhCceEEEEEe
Confidence 489999999999999 77788888654 5666643
No 268
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.91 E-value=0.12 Score=47.86 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 32 EIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 479999999999997 555555544
No 269
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=92.90 E-value=0.082 Score=53.66 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|+ |++|+|.+|||||| ...|...|... +|.+|--|.
T Consensus 1 Mk-Vi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MR-VYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred Cc-EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 44 89999999999999 77888888754 688887654
No 270
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=92.84 E-value=0.082 Score=49.66 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
-++|+|+|=.|+|||| +--+|..|... +|.+|++|-=
T Consensus 1 m~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 1 MRKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 0468888999999999 76777777543 7999999863
No 271
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.82 E-value=0.07 Score=48.76 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 79999999999997 666666554
No 272
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.82 E-value=0.085 Score=48.91 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=29.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
|++ |+|+|-.|+|||| +.-||..|... +|.+|++|--
T Consensus 1 m~~-iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 1 MRQ-IAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred CcE-EEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 655 6667999999999 77788888643 6999999963
No 273
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.82 E-value=0.098 Score=50.07 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
++||.|++|||||| .+.++..+..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999997 6666666643
No 274
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.81 E-value=0.073 Score=47.97 Aligned_cols=23 Identities=4% Similarity=-0.162 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 566666554
No 275
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=92.81 E-value=0.053 Score=44.32 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=17.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
++++.|.|++|+|||+ ++.+++.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 3578999999999998 677777664
No 276
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.79 E-value=0.076 Score=47.62 Aligned_cols=23 Identities=4% Similarity=-0.090 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999997 666666554
No 277
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.76 E-value=0.077 Score=54.26 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.+.|.+|||||| +..+|..++- ..+|+.|.+-.
T Consensus 256 ~vil~~G~~G~GKSt~a~~LA~~lg~--~~ii~tD~iR~ 292 (475)
T PRK12337 256 LHVLIGGVSGVGKSVLASALAYRLGI--TRIVSTDAVRE 292 (475)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC--cEEeehhHHHH
Confidence 589999999999998 7788888763 44889998743
No 278
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.71 E-value=0.076 Score=47.85 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 79999999999997 666666654
No 279
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.71 E-value=0.071 Score=52.50 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+..|.|+|++|||||| .+.+++.+..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 3468999999999998 5666666543
No 280
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.70 E-value=0.06 Score=54.01 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|+|+|++|||||| ++.|++.++
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 468999999999997 666666654
No 281
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=92.65 E-value=0.32 Score=49.47 Aligned_cols=34 Identities=6% Similarity=-0.097 Sum_probs=23.2
Q ss_pred CcEEEEEEc-CCCCCCCc-HHHHHHhcccC--CeEEEEc
Q 048274 1 MRRLTSVFG-GAAEPPKG-GNPDSNTLISD--TTTVICL 35 (329)
Q Consensus 1 mr~IIgI~G-gsgSGKST-a~~la~~L~~~--~v~vI~~ 35 (329)
|++ +.|+| .++||||+ +.-|+..|... +|..+..
T Consensus 3 m~~-i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPA-LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcE-EEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 555 45554 68899999 77788888765 3555544
No 282
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=92.62 E-value=0.13 Score=45.32 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC--eEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT--TTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~--v~vI~~Ddy 38 (329)
+|=|+|-||||||| |-.|.+.|...+ ..++.+|..
T Consensus 33 viWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNv 70 (207)
T KOG0635|consen 33 VIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNV 70 (207)
T ss_pred EEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccc
Confidence 68899999999999 777888886654 566666664
No 283
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.60 E-value=0.12 Score=50.37 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCCCCc-HHHH-HHhccc-CCeEEEEcc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPD-SNTLIS-DTTTVICLD 36 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~l-a~~L~~-~~v~vI~~D 36 (329)
.+++-|+|++|||||| |..+ ++.... ..|..|+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 3689999999999998 5443 333332 245556443
No 284
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.59 E-value=0.08 Score=47.56 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666654
No 285
>PF12846 AAA_10: AAA-like domain
Probab=92.59 E-value=0.076 Score=49.20 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=20.8
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
+.|+|.+|||||+ ++.+...+...+..++-.
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~ 35 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF 35 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999999998 555555554444433333
No 286
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.58 E-value=0.098 Score=49.03 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc-c--CCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI-S--DTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~-~--~~v~vI~~Dd 37 (329)
+|+|+|-.|||||| +..++..|. . .+|.+|+.|-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999 666455543 3 3689999997
No 287
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.57 E-value=0.11 Score=53.34 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++|.|++|||||| ++.+++...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 68999999999996 555554443
No 288
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.57 E-value=0.081 Score=48.24 Aligned_cols=24 Identities=4% Similarity=-0.092 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999997 6666666653
No 289
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=92.56 E-value=0.09 Score=48.94 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~ 34 (329)
++|+|+|.+|||||| +..++..|... +|.+|-
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 479999999999999 77888888754 677774
No 290
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.49 E-value=0.099 Score=49.73 Aligned_cols=37 Identities=8% Similarity=-0.069 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Ddyhr 40 (329)
++||.|.||||||| ++.+.+.+.. .+-..+.+.|...
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK 79 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh
Confidence 78999999999998 7777777763 3666777766544
No 291
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.46 E-value=0.14 Score=46.93 Aligned_cols=23 Identities=4% Similarity=0.030 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 79999999999997 555665554
No 292
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.089 Score=47.29 Aligned_cols=24 Identities=4% Similarity=-0.119 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 666666554
No 293
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.42 E-value=0.086 Score=48.18 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666665554
No 294
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.41 E-value=0.087 Score=48.29 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcC
Confidence 79999999999997 566665554
No 295
>PHA03132 thymidine kinase; Provisional
Probab=92.40 E-value=0.22 Score=52.31 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=24.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
.+|.|-|..|||||| ++.|++.| +..+.++.-
T Consensus 258 ~fIv~EGidGsGKTTlik~L~e~l-g~~Vi~t~E 290 (580)
T PHA03132 258 CFLFLEGVMGVGKTTLLNHMRGIL-GDNVLVFPE 290 (580)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-CCceEEEeC
Confidence 478999999999999 88888888 445544443
No 296
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.40 E-value=0.11 Score=51.34 Aligned_cols=24 Identities=8% Similarity=-0.018 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+|.|+|++|||||| .+.+++.+.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 479999999999998 566666663
No 297
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.35 E-value=0.15 Score=46.35 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 566666554
No 298
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=92.30 E-value=0.12 Score=49.74 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+||.+-|++|||||+ |+.||..|.=....-+.+|+.|-
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 4699999999999998 88888888754555567777765
No 299
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.30 E-value=0.082 Score=47.52 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 79999999999996 555555543
No 300
>PRK13764 ATPase; Provisional
Probab=92.28 E-value=0.11 Score=54.87 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
..|.|+|++|||||| ++.+++.+...+-.++.+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~Ti 291 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTM 291 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence 468999999999999 777777776544334343
No 301
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.26 E-value=0.15 Score=45.72 Aligned_cols=25 Identities=8% Similarity=-0.082 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+++|.|++|||||| .+.++..+..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 379999999999997 5666665543
No 302
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.24 Score=44.30 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++.|+|-+|+|||| .+.+.+.|
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH
Confidence 789999999999997 55455554
No 303
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.26 E-value=0.077 Score=48.17 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.++..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 379999999999998 77777777
No 304
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.23 E-value=0.12 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=20.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+..|.|+|++|||||| .+.+.+.+.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999998 677777764
No 305
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.22 E-value=0.091 Score=48.42 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666554
No 306
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.21 E-value=0.14 Score=45.73 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Ddy 38 (329)
..++.|+|++|||||+ +..++.... ...+..|+++.|
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~ 51 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGL 51 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4689999999999998 555444332 246899999873
No 307
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.19 E-value=0.099 Score=47.31 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666553
No 308
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.14 E-value=0.09 Score=44.94 Aligned_cols=24 Identities=8% Similarity=-0.141 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+|.+.|..|||||| ++.+++.|+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 389999999999998 788888875
No 309
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.14 E-value=0.1 Score=46.72 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 566666554
No 310
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.13 E-value=0.17 Score=53.88 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++|.|++|||||| ++.++....
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999996 555555543
No 311
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=92.10 E-value=0.098 Score=51.00 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| ++.++..+..
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCC
Confidence 79999999999998 7777777753
No 312
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.10 E-value=0.07 Score=47.87 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555555543
No 313
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=92.09 E-value=0.1 Score=48.46 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEE-EEc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTV-ICL 35 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~v-I~~ 35 (329)
||||+|..||||| ++|+.+.+.+..+ +++
T Consensus 2 iI~i~G~~gsGKs---tva~~~~~~g~~~~~~~ 31 (227)
T PHA02575 2 LIAISGKKRSGKD---TVADFIIENYNAVKYQL 31 (227)
T ss_pred EEEEeCCCCCCHH---HHHHHHHhcCCcEEEeh
Confidence 8999999999999 5777776655544 443
No 314
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.09 E-value=0.095 Score=47.29 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999996 555555543
No 315
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.08 E-value=0.12 Score=47.69 Aligned_cols=24 Identities=8% Similarity=-0.092 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
++.|.|++|||||| ++.+++.+..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 78999999999998 7777777763
No 316
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.07 E-value=0.1 Score=47.90 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 666666553
No 317
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=92.05 E-value=0.089 Score=49.42 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr~ 41 (329)
.++||.||.|||||| .+.++..+... +..++...|.-..
T Consensus 31 ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l 71 (250)
T COG0411 31 EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71 (250)
T ss_pred eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCC
Confidence 389999999999998 67777777655 6777777777544
No 318
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.05 E-value=0.12 Score=48.25 Aligned_cols=33 Identities=12% Similarity=-0.004 Sum_probs=24.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEE
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVIC 34 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~ 34 (329)
+..|.|+|++|||||| .+.+...+... .+.+|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 4689999999999998 56666666655 344444
No 319
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.04 E-value=0.1 Score=47.05 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 566666554
No 320
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.03 E-value=0.11 Score=46.34 Aligned_cols=24 Identities=8% Similarity=-0.033 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 379999999999997 666666554
No 321
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.02 E-value=0.17 Score=45.32 Aligned_cols=24 Identities=4% Similarity=-0.075 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 378999999999997 566665554
No 322
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.00 E-value=0.11 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999997 6666666543
No 323
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.99 E-value=0.11 Score=46.66 Aligned_cols=23 Identities=4% Similarity=-0.148 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999997 666666654
No 324
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.98 E-value=0.11 Score=47.51 Aligned_cols=23 Identities=4% Similarity=-0.034 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 666666554
No 325
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.97 E-value=0.13 Score=45.55 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=30.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc-cC--CeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI-SD--TTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~-~~--~v~vI~~Ddyhr 40 (329)
.+.++||+|+|||. |+.+++.|. .. ...+++|-.|-.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 57899999999998 888999988 33 577777777765
No 326
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.95 E-value=0.12 Score=50.38 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
++||.|++|||||| ++.++..+..
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Confidence 79999999999998 6777766643
No 327
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=91.92 E-value=0.16 Score=48.83 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEE
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVIC 34 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~ 34 (329)
++||.|+.|||||| .+.++..+... +-..|.
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~ 67 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 79999999999998 66677666543 333343
No 328
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.91 E-value=0.11 Score=47.84 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 379999999999997 566665554
No 329
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.90 E-value=0.25 Score=49.79 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.+.|++|+|||+ |+.+|+.+.
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 37899999999998 888887775
No 330
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.90 E-value=0.13 Score=48.34 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceecCCc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHSLDR 43 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr~dr 43 (329)
.+.+|.||||||||| -+.+...+..+ +-..|.+.+.-...+
T Consensus 35 ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence 378999999999997 55555556543 677777777554433
No 331
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.84 E-value=0.11 Score=38.65 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=13.1
Q ss_pred EEEEEcCCCCCCCc
Q 048274 4 LTSVFGGAAEPPKG 17 (329)
Q Consensus 4 IIgI~GgsgSGKST 17 (329)
++.|+|++||||||
T Consensus 25 ~tli~G~nGsGKST 38 (62)
T PF13555_consen 25 VTLITGPNGSGKST 38 (62)
T ss_pred EEEEECCCCCCHHH
Confidence 78999999999996
No 332
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.18 Score=49.51 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=43.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhh-hhcc-CCCCccccchhHHHHHHHHHhc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRK-EKGV-TALDPRANNFDLMYEQVKAMKD 73 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~-~~~~-~~~~Pea~d~d~L~~~L~~L~~ 73 (329)
-|+|.+.||+|.|||+ |+.||+.|. +=+-|.|++..--+.. ...+ .||+...=....|-+.+.+|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS-----IR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS-----IRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe-----eeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3789999999999998 888888775 2366777664211111 1122 2676665566666666666664
No 333
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=91.82 E-value=0.13 Score=47.97 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
+|+|+|=.|+|||| +.-||..|... +|.+|++|-
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 57888999999999 77788888653 799999993
No 334
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.58 Score=45.99 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=57.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccC----CeEEEEccceecCCc--------------hhhhhhccC-----------CC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISD----TTTVICLDDYHSLDR--------------TGRKEKGVT-----------AL 54 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~----~v~vI~~Ddyhr~dr--------------~~~~~~~~~-----------~~ 54 (329)
|.+.||+|||||- |++||+.|.=. .++.+.-=.|--.|= -++.+.|+- ..
T Consensus 100 ILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe 179 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE 179 (408)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCC
Confidence 7889999999998 88888888521 334444334432210 011111211 11
Q ss_pred Ccc-c--cchhHHHHHHHHHhcCCceeccccccccCCCCCCcccCCCcEEEEEc
Q 048274 55 DPR-A--NNFDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEG 105 (329)
Q Consensus 55 ~Pe-a--~d~d~L~~~L~~L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEG 105 (329)
+|. + .-=+..++.|-.+.+|.-...|.=.-..|.-.+...++-+.|+|+-|
T Consensus 180 N~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcg 233 (408)
T COG1219 180 NPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICG 233 (408)
T ss_pred CCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEec
Confidence 221 1 11235677788888888777776444444444455667677777654
No 335
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.81 E-value=0.17 Score=53.91 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.|+|.|++|||||| .+.++..+.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 68999999999996 555555553
No 336
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.12 Score=45.36 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999997 566665554
No 337
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.77 E-value=0.13 Score=50.91 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
++|+|+|.+|||||| ...+...|... +|.+|--|.
T Consensus 206 ~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 206 PLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 489999999999999 78888888765 688888764
No 338
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.76 E-value=0.11 Score=51.19 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
=|.|+||+|||||| .+.++....... -+||+-|
T Consensus 175 NILisGGTGSGKTTlLNal~~~i~~~e-RvItiED 208 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGFIDSDE-RVITIED 208 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCcc-cEEEEee
Confidence 47899999999996 444444443333 4555544
No 339
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.75 E-value=0.18 Score=45.39 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcC
Confidence 379999999999997 666666553
No 340
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.75 E-value=0.1 Score=48.84 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 79999999999996 555555443
No 341
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=91.74 E-value=0.15 Score=42.09 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEE
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTV 32 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~v 32 (329)
..|++.|++||||| ++.+.|....+++
T Consensus 4 ~~i~~~G~~g~GKt---tl~~~l~~~~~~~ 30 (168)
T cd04163 4 GFVAIVGRPNVGKS---TLLNALVGQKISI 30 (168)
T ss_pred eEEEEECCCCCCHH---HHHHHHhCCceEe
Confidence 47999999999999 5666665444433
No 342
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.74 E-value=0.12 Score=46.90 Aligned_cols=23 Identities=4% Similarity=-0.178 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 79999999999997 666666654
No 343
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.73 E-value=0.082 Score=46.20 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555665553
No 344
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.73 E-value=0.12 Score=47.13 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 34 e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred eEEEEECCCCCCHHHHHHHHhCccC
Confidence 479999999999998 666776665
No 345
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.72 E-value=0.17 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
||+|.|+|||||||.-+-.|.|.
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE 56 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLE 56 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhc
Confidence 89999999999997444455554
No 346
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.69 E-value=0.11 Score=46.53 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 666666554
No 347
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.68 E-value=0.086 Score=48.65 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 79999999999997 666666654
No 348
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=91.66 E-value=0.11 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 79999999999997 555555543
No 349
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.65 E-value=0.12 Score=47.88 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 79999999999997 666666654
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.64 E-value=0.12 Score=46.13 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 379999999999997 555665554
No 351
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.64 E-value=0.13 Score=47.48 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 666666554
No 352
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.59 E-value=0.15 Score=49.20 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=27.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
+.|.+|+|.||||||| -+.+|..+..+ -..|++++.-.
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~rPd-eG~I~lngr~L 62 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVL 62 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCCcc-ccEEEECCEEe
Confidence 4589999999999997 66667666654 34566666644
No 353
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.59 E-value=0.2 Score=52.72 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
++|+.+.||+|+|||| |..|++.+.......|..+++
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~ 140 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGE 140 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCC
Confidence 5689999999999999 888998887765666655443
No 354
>PRK10818 cell division inhibitor MinD; Provisional
Probab=91.59 E-value=0.16 Score=47.33 Aligned_cols=38 Identities=24% Similarity=0.181 Sum_probs=29.4
Q ss_pred CcEEEEEEcC-CCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVFGG-AAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~Gg-sgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
|.++|+|+++ .|+|||| +..+|..|.. .+|.+|++|-.
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 7678887775 4799999 7777777754 37999999964
No 355
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.58 E-value=0.13 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L 25 (329)
+.-|.|+|++|||||| .+.|.+.+
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999998 66666665
No 356
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.58 E-value=0.22 Score=51.63 Aligned_cols=32 Identities=3% Similarity=-0.175 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICL 35 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~ 35 (329)
.++|.|++|||||| .+.++..+... +-..+..
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 68999999999997 66666666432 4333443
No 357
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.58 E-value=0.21 Score=42.13 Aligned_cols=24 Identities=8% Similarity=-0.087 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.||.+.|.-|||||| ++.+++.|+
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999 888888885
No 358
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.56 E-value=0.13 Score=46.17 Aligned_cols=24 Identities=4% Similarity=-0.150 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 666666554
No 359
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.55 E-value=0.097 Score=47.53 Aligned_cols=23 Identities=0% Similarity=-0.155 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 79999999999997 666666554
No 360
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=91.53 E-value=0.16 Score=48.15 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
.||.|.|.||.|||| |..+|+.|+= -.+|++|.
T Consensus 90 ~IILIGGasGVGkStIA~ElA~rLgI--~~visTD~ 123 (299)
T COG2074 90 LIILIGGASGVGKSTIAGELARRLGI--RSVISTDS 123 (299)
T ss_pred eEEEecCCCCCChhHHHHHHHHHcCC--ceeecchH
Confidence 489999999999999 8889999973 34677776
No 361
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.51 E-value=0.13 Score=46.89 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999996 555555443
No 362
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.50 E-value=0.12 Score=46.69 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555665553
No 363
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.48 E-value=0.12 Score=47.86 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.++..+
T Consensus 23 ei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 23 EILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999996 55555544
No 364
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.48 E-value=0.13 Score=47.66 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 78999999999997 666666554
No 365
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.47 E-value=0.13 Score=46.31 Aligned_cols=24 Identities=8% Similarity=-0.134 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555665543
No 366
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.44 E-value=0.13 Score=50.45 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=22.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEE
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVI 33 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI 33 (329)
+.-|.|+|++|||||| .+.+.+.+... ++.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti 193 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITV 193 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe
Confidence 3468999999999998 56666666543 44444
No 367
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.40 E-value=0.13 Score=47.08 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555665554
No 368
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.40 E-value=0.13 Score=49.51 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEE
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVI 33 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI 33 (329)
+..|+|+|++|||||| .+.+++.+... ++.+|
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 3479999999999998 55666666443 44444
No 369
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=91.39 E-value=0.15 Score=47.24 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.|+.|.||+|+|||. |-.+|+.+ +..||..|..--|
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Driq~y 38 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKT---GAPVISLDRIQCY 38 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-
T ss_pred cEEEEECCCCCChhHHHHHHHHHh---CCCEEEecceecc
Confidence 478999999999996 55667766 5789999998555
No 370
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.35 E-value=0.21 Score=45.33 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=25.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHH-Hhcc-c------CCeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDS-NTLI-S------DTTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la-~~L~-~------~~v~vI~~Dd 37 (329)
..++.|.|++|||||+ +..++ +.+. . ..+..|++++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3589999999999998 65554 3222 1 4677888776
No 371
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.34 E-value=0.14 Score=42.76 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=22.6
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
|.|.|++|+|||+ ++.+|+.+.. .+..+.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-PVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-EEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-ceEEEEecc
Confidence 5789999999998 7888888832 344444433
No 372
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.34 E-value=0.14 Score=45.64 Aligned_cols=24 Identities=13% Similarity=-0.140 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555555543
No 373
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.66 Score=47.24 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=60.9
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccC----CeEEEEccceecCCch--------------hhhhhccCCC---------Cc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISD----TTTVICLDDYHSLDRT--------------GRKEKGVTAL---------DP 56 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~----~v~vI~~Ddyhr~dr~--------------~~~~~~~~~~---------~P 56 (329)
|.+.||+|||||- |++||+.|.=. .|+.+..=.|-=.|=. +..++|+-++ .+
T Consensus 229 vLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~ 308 (564)
T KOG0745|consen 229 VLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAE 308 (564)
T ss_pred EEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCc
Confidence 6789999999998 88888888521 3444444455432211 1112233222 11
Q ss_pred ccc---c--hhHHHHHHHHHhcCCceeccccccccCCCCCCcccCCCcEEEEE
Q 048274 57 RAN---N--FDLMYEQVKAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIE 104 (329)
Q Consensus 57 ea~---d--~d~L~~~L~~L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvE 104 (329)
..+ | =+..++.|-.|.+|.-+..|.=|..++.......++-++|||+-
T Consensus 309 ~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFia 361 (564)
T KOG0745|consen 309 SIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIA 361 (564)
T ss_pred cccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEe
Confidence 111 1 13467788888889888888766655555556677778887765
No 374
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.32 E-value=0.13 Score=46.23 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999997 555665554
No 375
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.32 E-value=0.14 Score=46.15 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 379999999999997 666666554
No 376
>PRK09354 recA recombinase A; Provisional
Probab=91.32 E-value=0.26 Score=48.72 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCCCCc-HHH-HHHhcccCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNP-DSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~-la~~L~~~~v~vI~~Ddyhr 40 (329)
.+++-|+|++|||||| |.. +++.... +-.++-.|--+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s 99 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHA 99 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccc
Confidence 4688999999999998 533 4444332 333334444444
No 377
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.31 E-value=0.15 Score=49.61 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L 25 (329)
-+|.++||+|||||| |+|..+
T Consensus 126 GLILVTGpTGSGKST--TlAamI 146 (353)
T COG2805 126 GLILVTGPTGSGKST--TLAAMI 146 (353)
T ss_pred ceEEEeCCCCCcHHH--HHHHHH
Confidence 479999999999999 444443
No 378
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.31 E-value=0.14 Score=46.82 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 79999999999997 555665554
No 379
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.30 E-value=0.14 Score=46.84 Aligned_cols=23 Identities=4% Similarity=-0.143 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCC
Confidence 79999999999997 666666654
No 380
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.28 E-value=0.14 Score=44.54 Aligned_cols=23 Identities=4% Similarity=-0.165 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999997 666666554
No 381
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=91.27 E-value=0.1 Score=48.66 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999997 66666655
No 382
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.27 E-value=0.12 Score=45.10 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 79999999999997 6666666543
No 383
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=91.26 E-value=0.17 Score=44.04 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHH-hcc-cCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSN-TLI-SDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~-~L~-~~~v~vI~~Dd 37 (329)
++.|.|++|+|||+ +..++. .+. +..|..++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 47899999999998 544433 332 34688888764
No 384
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.26 E-value=0.14 Score=46.60 Aligned_cols=23 Identities=4% Similarity=-0.084 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 566666554
No 385
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.25 E-value=0.14 Score=46.55 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 79999999999997 666666654
No 386
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.24 E-value=0.52 Score=43.60 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=27.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr 40 (329)
.|+||.|+.|||||| -..+|..|... +...|+.=|--+
T Consensus 29 ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~ 68 (245)
T COG4555 29 EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR 68 (245)
T ss_pred eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc
Confidence 489999999999998 56677777654 566665544444
No 387
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=91.22 E-value=0.18 Score=48.26 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
++||.|++|||||| .+.++..+.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666554
No 388
>PTZ00035 Rad51 protein; Provisional
Probab=91.22 E-value=0.54 Score=46.14 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=25.3
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc--------cCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI--------SDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~--------~~~v~vI~~Ddyhr 40 (329)
..++.|+|++|||||+ +..++-... +..+..|++..-++
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~ 165 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFR 165 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCC
Confidence 3588999999999998 655542221 22466677665443
No 389
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.20 E-value=0.14 Score=47.79 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 566666554
No 390
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.20 E-value=0.14 Score=46.83 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+++|.|++|||||| .+.++..+..
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 379999999999997 6666666543
No 391
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.18 E-value=0.12 Score=47.88 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 79999999999997 66666554
No 392
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.17 E-value=0.15 Score=44.82 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555555554
No 393
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.16 E-value=0.14 Score=47.93 Aligned_cols=23 Identities=13% Similarity=-0.016 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 666666654
No 394
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.15 E-value=0.14 Score=47.31 Aligned_cols=23 Identities=4% Similarity=-0.184 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 566665554
No 395
>PRK10908 cell division protein FtsE; Provisional
Probab=91.14 E-value=0.15 Score=46.18 Aligned_cols=24 Identities=4% Similarity=-0.147 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 666666554
No 396
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.14 E-value=0.14 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.9
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccC
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISD 28 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~ 28 (329)
|+| |.+.|++||||| +|++.|.+.
T Consensus 1 Mkr-imliG~~g~GKT---TL~q~L~~~ 24 (143)
T PF10662_consen 1 MKR-IMLIGPSGSGKT---TLAQALNGE 24 (143)
T ss_pred Cce-EEEECCCCCCHH---HHHHHHcCC
Confidence 666 678899999999 788888753
No 397
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.14 E-value=0.14 Score=47.28 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 79999999999997 566665543
No 398
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.13 E-value=0.15 Score=46.30 Aligned_cols=24 Identities=8% Similarity=-0.105 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 79999999999997 6666666543
No 399
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.11 E-value=0.15 Score=46.80 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555655543
No 400
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.10 E-value=0.16 Score=45.43 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 555555543
No 401
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.10 E-value=0.097 Score=44.61 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC
Confidence 378999999999996 555555543
No 402
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.08 E-value=0.16 Score=45.52 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 79999999999997 666666654
No 403
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=91.06 E-value=0.11 Score=48.01 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 379999999999997 566665554
No 404
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.05 E-value=0.12 Score=46.72 Aligned_cols=23 Identities=4% Similarity=-0.077 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 79999999999997 555555543
No 405
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=91.05 E-value=0.17 Score=48.35 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=29.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|+ |+++|=.|+|||| +..+|..|... +|.+|++|-
T Consensus 1 m~--ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MK--LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred Ce--EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 55 8999999999999 77788888654 688999986
No 406
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.04 E-value=0.15 Score=48.34 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 79999999999997 6667666643
No 407
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.04 E-value=0.11 Score=48.39 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 379999999999997 666666654
No 408
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.04 E-value=0.15 Score=46.16 Aligned_cols=23 Identities=4% Similarity=-0.057 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666554
No 409
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=91.04 E-value=0.11 Score=48.28 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 31 e~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 379999999999997 666666653
No 410
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.04 E-value=0.22 Score=53.09 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.|+|.|++|||||| ++.+++.+.
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 68999999999997 555555554
No 411
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.03 E-value=0.15 Score=46.64 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999996 555555543
No 412
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=91.01 E-value=0.25 Score=44.16 Aligned_cols=24 Identities=8% Similarity=-0.187 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555555553
No 413
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=90.96 E-value=0.15 Score=46.73 Aligned_cols=24 Identities=4% Similarity=-0.060 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 566666554
No 414
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.96 E-value=0.16 Score=46.25 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999997 55555544
No 415
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.96 E-value=0.3 Score=46.58 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
.+|++.|++|+|||| +..++..+.. ..+.+|++|.|.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 478999999999999 6667777653 369999999774
No 416
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.94 E-value=0.17 Score=44.07 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 78999999999997 6666666654
No 417
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.12 Score=47.69 Aligned_cols=23 Identities=13% Similarity=-0.093 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhccc
Confidence 79999999999997 666666653
No 418
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.88 E-value=0.12 Score=47.74 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999997 66666654
No 419
>PRK10646 ADP-binding protein; Provisional
Probab=90.86 E-value=0.24 Score=43.42 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
||.+.|.-|||||| ++.+++.|+
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999 888888886
No 420
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=90.85 E-value=0.22 Score=43.22 Aligned_cols=34 Identities=15% Similarity=-0.068 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
.++.|+|..|||||| .+.+.+......+.+|.-|
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~ 35 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENE 35 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecC
Confidence 368899999999997 5545444433345554433
No 421
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.85 E-value=0.15 Score=47.94 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 79999999999997 555555554
No 422
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.85 E-value=0.17 Score=46.21 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 78999999999997 666666654
No 423
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.84 E-value=0.2 Score=49.94 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+|.|+|++|||||| .+.+.+.+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999 556666664
No 424
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=90.84 E-value=0.18 Score=47.47 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 79999999999998 777777664
No 425
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=0.25 Score=49.45 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
-||-+.|-.|||||| |..+|..+... .+.++|.|-|--
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 388999999999999 88999999765 799999999853
No 426
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.82 E-value=0.17 Score=44.99 Aligned_cols=23 Identities=9% Similarity=-0.037 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 555555544
No 427
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=90.82 E-value=0.17 Score=46.45 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 666666554
No 428
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.81 E-value=0.24 Score=44.97 Aligned_cols=37 Identities=8% Similarity=0.045 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhc-c-cCCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTL-I-SDTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L-~-~~~v~vI~~Ddy 38 (329)
..++.|+|++|||||+ |..++..+ . ..+|..|+++.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~ 62 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGL 62 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3589999999999998 55544433 2 347888998843
No 429
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.81 E-value=0.14 Score=47.72 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 79999999999997 666666553
No 430
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=90.80 E-value=0.27 Score=47.17 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
.++|+.|+.|||||| -+.++..+...
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 389999999999997 56666666543
No 431
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.79 E-value=0.17 Score=47.50 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 555555554
No 432
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.78 E-value=0.17 Score=45.50 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
..+.|.|++|+|||+ +..+++.+..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357899999999998 7777766643
No 433
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=90.76 E-value=0.16 Score=47.72 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555555543
No 434
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.76 E-value=0.18 Score=45.07 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCC
Confidence 78999999999997 6666666543
No 435
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.76 E-value=0.17 Score=47.58 Aligned_cols=24 Identities=4% Similarity=-0.074 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 51 e~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 51 EIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 379999999999997 566666554
No 436
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.74 E-value=0.17 Score=52.50 Aligned_cols=30 Identities=7% Similarity=-0.066 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc-CCeEEE
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVI 33 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI 33 (329)
.+||.|++|||||| ++.+.+.+.. .+...|
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 68999999999997 5656665543 344444
No 437
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=90.72 E-value=0.14 Score=49.81 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
..|+|.|++|||||| ++.|++.++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 468999999999996 566665554
No 438
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=90.69 E-value=0.18 Score=45.68 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 79999999999997 666666554
No 439
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=90.68 E-value=0.21 Score=47.82 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
++|+|+|-.|.|||| +.-||..|.. .+|.+|++|-=.
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~ 44 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKA 44 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 477778999999999 6667777754 379999999743
No 440
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.68 E-value=0.18 Score=44.12 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999997 566666554
No 441
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.68 E-value=0.2 Score=46.74 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
+|++.|=.|+|||| +.-||..|.. .+|.+|++|-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 47777999999999 7677777754 3699999984
No 442
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.67 E-value=0.28 Score=47.82 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccC--CeEEEEccceecCCc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISD--TTTVICLDDYHSLDR 43 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~--~v~vI~~Ddyhr~dr 43 (329)
|.||.|.||+||||--++.|.|... +-..++++|.-..+.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE 75 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCCh
Confidence 7899999999999633455555433 677888888776643
No 443
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.66 E-value=0.15 Score=46.63 Aligned_cols=23 Identities=4% Similarity=-0.010 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 79999999999996 555555543
No 444
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=90.66 E-value=0.12 Score=50.23 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| ++.++..+.
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccCC
Confidence 79999999999998 777777664
No 445
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.66 E-value=0.17 Score=52.83 Aligned_cols=37 Identities=5% Similarity=-0.103 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr 40 (329)
.|+|.|++|||||| .+.++..+... +...+..-+...
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 68999999999996 55555555432 444444434433
No 446
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.65 E-value=0.1 Score=46.12 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
|.|+|.+|+|||| .+.+.+.|...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~ 26 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKK 26 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHhhcc
Confidence 7899999999999 77777887543
No 447
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.65 E-value=0.17 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 79999999999997 6666665543
No 448
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=90.65 E-value=0.16 Score=45.87 Aligned_cols=20 Identities=5% Similarity=-0.168 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDS 22 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la 22 (329)
++++|+|++|||||| .+.++
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 478999999999997 55554
No 449
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=90.64 E-value=0.3 Score=52.58 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.|+|.|.||||||| ++-+++.... ..--|..|++-.
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl 537 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDL 537 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeH
Confidence 69999999999995 4333333322 344677777754
No 450
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.64 E-value=0.16 Score=47.31 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 566666554
No 451
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=90.63 E-value=0.28 Score=42.76 Aligned_cols=23 Identities=9% Similarity=-0.093 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
||.+.|.-|||||| ++-+++.|+
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 79999999999999 888888886
No 452
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.59 E-value=0.17 Score=47.72 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555555554
No 453
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.59 E-value=0.14 Score=47.47 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 79999999999997 66677665
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.59 E-value=0.19 Score=51.77 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
+|.|+|++|||||| ...+.+.+......++...|
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED 278 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVED 278 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC
Confidence 79999999999998 33344444433444555544
No 455
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.58 E-value=0.22 Score=48.72 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+|.|+|++|||||| .+.+.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 479999999999998 555666554
No 456
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.56 E-value=0.2 Score=43.70 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddy 38 (329)
=|.|.|+|||||| ++|..|...+...| .||.
T Consensus 16 gvLi~G~sG~GKS---tlal~L~~~g~~lv-aDD~ 46 (149)
T cd01918 16 GVLITGPSGIGKS---ELALELIKRGHRLV-ADDR 46 (149)
T ss_pred EEEEEcCCCCCHH---HHHHHHHHcCCeEE-ECCE
Confidence 3779999999999 56656555555555 4554
No 457
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=90.54 E-value=0.15 Score=47.87 Aligned_cols=23 Identities=9% Similarity=-0.149 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 79999999999997 666776654
No 458
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.51 E-value=0.18 Score=47.00 Aligned_cols=23 Identities=4% Similarity=-0.010 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666654
No 459
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.51 E-value=0.14 Score=47.89 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 79999999999997 66666654
No 460
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.51 E-value=0.15 Score=47.04 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 79999999999997 666666554
No 461
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.50 E-value=0.16 Score=47.22 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=14.4
Q ss_pred cEEEEEEcCCCCCCCc
Q 048274 2 RRLTSVFGGAAEPPKG 17 (329)
Q Consensus 2 r~IIgI~GgsgSGKST 17 (329)
+.|+++.|||||||||
T Consensus 33 ~~VTAlIGPSGcGKST 48 (253)
T COG1117 33 NKVTALIGPSGCGKST 48 (253)
T ss_pred CceEEEECCCCcCHHH
Confidence 4589999999999996
No 462
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.49 E-value=0.63 Score=45.88 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHH--Hhcc------cCCeEEEEccceecCCc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDS--NTLI------SDTTTVICLDDYHSLDR 43 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la--~~L~------~~~v~vI~~Ddyhr~dr 43 (329)
..|+-|+|++|||||+ |..++ ..+. ...+..|++..=++++|
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peR 176 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDR 176 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHH
Confidence 4588899999999998 66553 2221 13688888877555443
No 463
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=90.49 E-value=0.14 Score=46.85 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=30.9
Q ss_pred CCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhccc
Q 048274 96 KPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRD 139 (329)
Q Consensus 96 ~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD 139 (329)
+..+..|++-+|-+.....+=..|..||+.++|+++++|-.+|-
T Consensus 132 ~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~ 175 (244)
T KOG4235|consen 132 NEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRA 175 (244)
T ss_pred ccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHh
Confidence 34556666666655432333347999999999999999977664
No 464
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.46 E-value=0.13 Score=45.20 Aligned_cols=23 Identities=4% Similarity=-0.078 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999997 555555554
No 465
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=90.41 E-value=0.19 Score=48.35 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999997 555555554
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.39 E-value=0.2 Score=43.49 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999996 555555543
No 467
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.39 E-value=0.18 Score=46.55 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555555543
No 468
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.36 E-value=0.13 Score=47.79 Aligned_cols=22 Identities=9% Similarity=-0.075 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999997 55555554
No 469
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.33 E-value=0.14 Score=47.42 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 79999999999997 666666554
No 470
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.33 E-value=0.19 Score=47.21 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 566666554
No 471
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=90.31 E-value=0.22 Score=46.86 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=29.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
|+. |+|.|=.|+|||| +.-||..|... +|.+|++|-=
T Consensus 1 ~~~-i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq 40 (279)
T PRK13230 1 MRK-FCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK 40 (279)
T ss_pred CcE-EEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc
Confidence 444 6666999999999 77788888654 6999999974
No 472
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.29 E-value=0.15 Score=47.11 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 79999999999997 66666654
No 473
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.27 E-value=0.19 Score=45.85 Aligned_cols=24 Identities=4% Similarity=-0.118 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555665543
No 474
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=90.27 E-value=0.19 Score=49.22 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 79999999999997 6666666543
No 475
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.26 E-value=0.19 Score=47.64 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999997 6666666543
No 476
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=90.26 E-value=0.28 Score=47.00 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
++||.|+.|||||| .+.++..+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 79999999999997 5666665543
No 477
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.25 E-value=0.19 Score=46.13 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcC
Confidence 379999999999997 566665554
No 478
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=90.23 E-value=0.14 Score=48.03 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555665554
No 479
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.22 E-value=0.16 Score=46.94 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 78999999999997 66666654
No 480
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.21 E-value=0.14 Score=47.39 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999997 55555543
No 481
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=90.20 E-value=0.15 Score=42.21 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 379999999999995 44444443
No 482
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.19 E-value=0.18 Score=47.70 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 28 e~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 28 RVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555665554
No 483
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=90.18 E-value=0.2 Score=52.27 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICL 35 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~ 35 (329)
+|+|+|++|||||| ++.++...... +...+..
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 69999999999996 55555554432 3444443
No 484
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.18 E-value=0.32 Score=51.85 Aligned_cols=23 Identities=4% Similarity=-0.133 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.|+|.|++|||||| .+.++....
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 68999999999996 555555443
No 485
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=90.17 E-value=0.21 Score=48.01 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
++|+|+|=.|+|||| +..+|..|... +|.+|.+|-
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 578888999999999 77788877643 799999986
No 486
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=90.16 E-value=0.19 Score=46.95 Aligned_cols=23 Identities=4% Similarity=-0.135 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555666554
No 487
>CHL00175 minD septum-site determining protein; Validated
Probab=90.16 E-value=0.27 Score=46.17 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=29.4
Q ss_pred CcEEEEEEc-CCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 1 MRRLTSVFG-GAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~G-gsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
|.++|+|++ -.|+|||| +.-+|..|... +|.+|++|--
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 556788777 55799999 77788888643 6999999974
No 488
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.15 E-value=0.2 Score=45.28 Aligned_cols=23 Identities=13% Similarity=-0.113 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555555543
No 489
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=90.14 E-value=0.22 Score=46.38 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Dd 37 (329)
++|+|.|=.|+|||| +.-||..|... +|.+|++|-
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~GrVLliD~Dp 39 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDHRVLVIGCDP 39 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCEEEEEeEcc
Confidence 468888999999999 77788888644 577888883
No 490
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.13 E-value=0.2 Score=47.21 Aligned_cols=35 Identities=3% Similarity=-0.113 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddy 38 (329)
+|+|.|+||||||| -+-+|...... +...+.+...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v 67 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc
Confidence 68999999999996 44444444432 4444544443
No 491
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=90.12 E-value=0.16 Score=47.63 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 79999999999998 677776653
No 492
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.12 E-value=0.21 Score=45.00 Aligned_cols=23 Identities=4% Similarity=-0.129 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 79999999999996 555555543
No 493
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=90.11 E-value=0.21 Score=47.02 Aligned_cols=23 Identities=9% Similarity=-0.156 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 53 ~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 79999999999997 666766654
No 494
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.11 E-value=0.21 Score=45.87 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 666666554
No 495
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=90.10 E-value=0.27 Score=46.92 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccC--CeEEEEccceecCCchhhhh-hc--------cCCC--------Ccc--ccchh
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISD--TTTVICLDDYHSLDRTGRKE-KG--------VTAL--------DPR--ANNFD 62 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~-~~--------~~~~--------~Pe--a~d~d 62 (329)
++.+.|+|||||||.-.+-|.|.+. +-..|..-+.-.++.-+.++ .| +.|. -|. -++-+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~ 108 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE 108 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHH
Confidence 6789999999999966677777654 44445444444433322222 11 1222 232 23333
Q ss_pred HHHHHHHHHhc--C-Cc-eeccccccc-cCCCCCCc----cc-CCCcEEEEEccccccchhhh------------ccCCE
Q 048274 63 LMYEQVKAMKD--G-VS-VEKPIYNHV-TGLLDPPE----LI-KPPKILVIEGLHPMYDARVR------------ELLDF 120 (329)
Q Consensus 63 ~L~~~L~~L~~--G-~~-i~~P~Yd~~-tg~~~~~~----~i-~p~~vlIvEGl~~l~~~~lr------------~~~D~ 120 (329)
...+...+|.. | .+ -...+|-|. +|--.+.. .+ ...++++.+=.|+..+|-.| ++---
T Consensus 109 ~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kT 188 (309)
T COG1125 109 RIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT 188 (309)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCE
Confidence 44444444433 2 22 233444332 22111111 11 24678888888888876322 22335
Q ss_pred EEEEEC--CHHHHHHHhh
Q 048274 121 SIYLDI--SNEVKFAWKI 136 (329)
Q Consensus 121 ~IyVD~--~~evrl~rkI 136 (329)
.|||.- ++.+++.-||
T Consensus 189 ivfVTHDidEA~kLadri 206 (309)
T COG1125 189 IVFVTHDIDEALKLADRI 206 (309)
T ss_pred EEEEecCHHHHHhhhceE
Confidence 677754 4556665544
No 496
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.10 E-value=0.2 Score=47.22 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999997 566666554
No 497
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=90.08 E-value=0.21 Score=46.39 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999997 555665554
No 498
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=90.02 E-value=0.21 Score=53.57 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++|.|++|||||| .+.+++.+.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 69999999999997 666666554
No 499
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.02 E-value=0.21 Score=47.22 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 666666654
No 500
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.01 E-value=0.2 Score=47.68 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999997 6666666543
Done!