Query 048274
Match_columns 329
No_of_seqs 258 out of 1471
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a7j_A Phosphoribulokinase; tr 100.0 2.9E-40 1E-44 312.5 13.0 225 2-236 5-268 (290)
2 3tqc_A Pantothenate kinase; bi 100.0 4.7E-28 1.6E-32 232.5 13.2 180 2-182 92-311 (321)
3 1sq5_A Pantothenate kinase; P- 99.9 4.6E-24 1.6E-28 202.5 14.6 177 3-180 81-297 (308)
4 1uj2_A Uridine-cytidine kinase 99.9 4E-24 1.4E-28 196.3 13.3 176 2-177 22-211 (252)
5 1odf_A YGR205W, hypothetical 3 99.9 2.5E-24 8.5E-29 203.6 9.6 185 3-197 32-286 (290)
6 3c8u_A Fructokinase; YP_612366 99.9 1.7E-22 5.7E-27 180.2 12.5 173 3-178 23-207 (208)
7 2ga8_A Hypothetical 39.9 kDa p 99.9 3.1E-23 1.1E-27 201.2 8.3 147 29-178 155-350 (359)
8 3asz_A Uridine kinase; cytidin 99.9 3.2E-21 1.1E-25 170.9 15.1 177 3-180 7-188 (211)
9 3aez_A Pantothenate kinase; tr 99.9 1.8E-21 6.1E-26 185.8 13.0 177 3-180 91-300 (312)
10 1rz3_A Hypothetical protein rb 99.8 1.6E-21 5.5E-26 173.2 3.3 166 3-178 23-199 (201)
11 2jeo_A Uridine-cytidine kinase 99.8 9.1E-20 3.1E-24 166.6 14.0 175 3-178 26-214 (245)
12 4i1u_A Dephospho-COA kinase; s 99.6 1.3E-17 4.3E-22 151.1 0.6 161 4-179 11-184 (210)
13 2qt1_A Nicotinamide riboside k 99.6 5.4E-15 1.8E-19 130.7 10.5 161 2-178 21-188 (207)
14 2f6r_A COA synthase, bifunctio 99.5 2.4E-15 8.1E-20 140.8 4.9 163 3-179 76-252 (281)
15 2grj_A Dephospho-COA kinase; T 99.5 1.1E-15 3.8E-20 136.0 -0.2 148 3-179 13-170 (192)
16 1jjv_A Dephospho-COA kinase; P 99.5 4.7E-14 1.6E-18 124.3 5.9 163 1-179 1-176 (206)
17 3ake_A Cytidylate kinase; CMP 99.4 5.3E-14 1.8E-18 123.2 1.5 160 1-179 1-191 (208)
18 3d3q_A TRNA delta(2)-isopenten 99.4 2.3E-14 7.8E-19 138.3 -1.5 150 1-168 6-164 (340)
19 1vht_A Dephospho-COA kinase; s 99.3 1.3E-12 4.6E-17 116.1 6.3 161 2-179 4-178 (218)
20 1uf9_A TT1252 protein; P-loop, 99.3 4.1E-13 1.4E-17 117.1 2.3 162 2-179 8-177 (203)
21 2if2_A Dephospho-COA kinase; a 99.3 5.8E-13 2E-17 116.9 3.1 159 3-179 2-175 (204)
22 1cke_A CK, MSSA, protein (cyti 99.2 3.5E-11 1.2E-15 106.9 8.5 79 98-179 123-205 (227)
23 1q3t_A Cytidylate kinase; nucl 99.2 5E-11 1.7E-15 107.7 9.2 166 3-179 17-217 (236)
24 3lw7_A Adenylate kinase relate 99.1 1.2E-10 4.1E-15 97.8 7.1 153 3-179 2-160 (179)
25 2h92_A Cytidylate kinase; ross 99.0 2.3E-10 7.8E-15 101.3 4.8 78 99-179 119-200 (219)
26 3r20_A Cytidylate kinase; stru 99.0 9.9E-10 3.4E-14 100.6 8.5 169 3-181 10-212 (233)
27 4e22_A Cytidylate kinase; P-lo 98.9 3.6E-09 1.2E-13 96.9 10.5 81 98-180 145-228 (252)
28 1qf9_A UMP/CMP kinase, protein 98.9 2E-09 6.7E-14 92.4 6.0 150 1-179 5-175 (194)
29 1zuh_A Shikimate kinase; alpha 98.8 2.7E-09 9.2E-14 90.7 5.6 139 4-179 9-153 (168)
30 3t61_A Gluconokinase; PSI-biol 98.8 1.3E-08 4.4E-13 89.1 9.9 137 4-179 20-163 (202)
31 1tev_A UMP-CMP kinase; ploop, 98.8 5.5E-09 1.9E-13 89.7 6.7 120 2-140 3-136 (196)
32 2bwj_A Adenylate kinase 5; pho 98.8 3.7E-09 1.3E-13 91.5 5.5 117 2-140 12-138 (199)
33 2pt5_A Shikimate kinase, SK; a 98.8 3E-09 1E-13 90.0 4.3 136 4-179 2-146 (168)
34 1ukz_A Uridylate kinase; trans 98.8 9.4E-09 3.2E-13 89.8 7.6 135 3-164 16-173 (203)
35 2iyv_A Shikimate kinase, SK; t 98.7 1.7E-09 5.7E-14 93.2 1.5 37 1-40 1-38 (184)
36 3trf_A Shikimate kinase, SK; a 98.7 5.4E-09 1.9E-13 89.9 2.8 141 2-179 5-157 (185)
37 1e6c_A Shikimate kinase; phosp 98.6 7.8E-09 2.7E-13 87.6 2.4 37 1-40 1-38 (173)
38 4eun_A Thermoresistant glucoki 98.6 3.1E-07 1E-11 80.5 11.4 35 3-40 30-65 (200)
39 3vaa_A Shikimate kinase, SK; s 98.6 5.2E-08 1.8E-12 85.4 5.7 35 3-40 26-61 (199)
40 2pbr_A DTMP kinase, thymidylat 98.5 1.4E-07 4.8E-12 80.9 7.6 34 4-37 2-36 (195)
41 3kb2_A SPBC2 prophage-derived 98.5 4.4E-08 1.5E-12 82.4 4.2 143 4-179 3-149 (173)
42 3fb4_A Adenylate kinase; psych 98.5 8E-08 2.7E-12 84.6 6.0 35 4-41 2-37 (216)
43 1kht_A Adenylate kinase; phosp 98.5 9.7E-08 3.3E-12 81.7 5.9 38 3-40 4-44 (192)
44 1kag_A SKI, shikimate kinase I 98.5 1.6E-08 5.6E-13 85.8 0.9 37 1-40 3-40 (173)
45 2j41_A Guanylate kinase; GMP, 98.5 5.2E-08 1.8E-12 84.7 3.8 157 3-179 7-171 (207)
46 1knq_A Gluconate kinase; ALFA/ 98.5 6.7E-07 2.3E-11 76.1 10.3 35 3-40 9-44 (175)
47 2vp4_A Deoxynucleoside kinase; 98.5 2.6E-09 9E-14 96.2 -5.3 64 74-138 104-167 (230)
48 3fdi_A Uncharacterized protein 98.5 1.3E-07 4.4E-12 84.0 5.8 73 101-179 101-181 (201)
49 1nks_A Adenylate kinase; therm 98.5 3.6E-07 1.2E-11 78.1 8.1 38 3-40 2-42 (194)
50 3tr0_A Guanylate kinase, GMP k 98.5 6.5E-07 2.2E-11 77.7 9.6 73 97-179 96-171 (205)
51 3dl0_A Adenylate kinase; phosp 98.4 2.2E-07 7.7E-12 81.9 6.3 35 4-41 2-37 (216)
52 3nwj_A ATSK2; P loop, shikimat 98.4 1.1E-07 3.7E-12 87.7 4.2 140 2-177 48-205 (250)
53 1y63_A LMAJ004144AAA protein; 98.4 5.4E-07 1.9E-11 78.0 8.4 37 3-41 11-48 (184)
54 2cdn_A Adenylate kinase; phosp 98.4 3E-07 1E-11 80.3 6.5 35 3-40 21-56 (201)
55 2z0h_A DTMP kinase, thymidylat 98.4 3.6E-07 1.2E-11 78.7 6.9 34 4-37 2-36 (197)
56 1via_A Shikimate kinase; struc 98.4 1.7E-07 5.9E-12 80.0 4.5 139 4-179 6-149 (175)
57 2c95_A Adenylate kinase 1; tra 98.4 2.2E-07 7.5E-12 80.0 5.2 36 3-41 10-46 (196)
58 3iij_A Coilin-interacting nucl 98.4 6.3E-07 2.1E-11 76.7 7.2 35 3-40 12-47 (180)
59 2jaq_A Deoxyguanosine kinase; 98.4 3.3E-08 1.1E-12 85.5 -0.9 56 116-179 123-184 (205)
60 3hdt_A Putative kinase; struct 98.3 3.7E-07 1.3E-11 82.7 4.8 57 119-179 138-201 (223)
61 3tlx_A Adenylate kinase 2; str 98.3 1.2E-06 4E-11 79.7 7.9 36 3-41 30-66 (243)
62 2plr_A DTMP kinase, probable t 98.2 5.4E-06 1.8E-10 71.9 10.5 27 3-29 5-32 (213)
63 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 3.8E-06 1.3E-10 76.9 9.6 37 3-39 5-44 (260)
64 1qhx_A CPT, protein (chloramph 98.2 5.7E-06 2E-10 70.2 9.3 39 1-40 2-41 (178)
65 2pez_A Bifunctional 3'-phospho 98.2 3.3E-06 1.1E-10 72.2 7.6 34 3-36 6-40 (179)
66 2qor_A Guanylate kinase; phosp 98.2 1.6E-06 5.5E-11 76.1 5.4 158 3-179 13-181 (204)
67 3cm0_A Adenylate kinase; ATP-b 98.2 2.1E-06 7.3E-11 73.4 5.8 35 3-40 5-40 (186)
68 2rhm_A Putative kinase; P-loop 98.1 9E-07 3.1E-11 75.9 3.1 35 2-39 5-40 (193)
69 1zd8_A GTP:AMP phosphotransfer 98.1 2.2E-06 7.5E-11 76.3 5.2 36 3-41 8-44 (227)
70 1ly1_A Polynucleotide kinase; 98.1 3.2E-06 1.1E-10 71.4 5.6 38 1-40 1-39 (181)
71 2wwf_A Thymidilate kinase, put 98.1 4.4E-06 1.5E-10 72.7 6.6 27 3-29 11-38 (212)
72 3a00_A Guanylate kinase, GMP k 98.1 8.2E-07 2.8E-11 77.0 1.4 73 97-179 91-169 (186)
73 2ze6_A Isopentenyl transferase 98.0 1.2E-05 4.1E-10 73.5 8.8 36 3-41 2-38 (253)
74 1ltq_A Polynucleotide kinase; 98.0 8.3E-06 2.8E-10 75.3 7.5 131 1-155 1-141 (301)
75 1zak_A Adenylate kinase; ATP:A 98.0 2E-06 6.8E-11 76.2 3.1 36 3-41 6-42 (222)
76 3lnc_A Guanylate kinase, GMP k 98.0 3.8E-06 1.3E-10 75.0 4.1 72 98-179 118-193 (231)
77 2xb4_A Adenylate kinase; ATP-b 98.0 9.4E-06 3.2E-10 72.4 6.3 35 4-41 2-37 (223)
78 1e4v_A Adenylate kinase; trans 98.0 5E-06 1.7E-10 73.4 4.4 34 5-41 3-37 (214)
79 1aky_A Adenylate kinase; ATP:A 98.0 9E-06 3.1E-10 71.9 5.9 34 4-40 6-40 (220)
80 3umf_A Adenylate kinase; rossm 97.9 1.9E-05 6.3E-10 71.3 7.1 111 3-139 30-154 (217)
81 2vli_A Antibiotic resistance p 97.9 1.6E-05 5.3E-10 67.6 5.9 24 3-26 6-30 (183)
82 1m7g_A Adenylylsulfate kinase; 97.8 7.7E-06 2.6E-10 72.1 3.5 37 3-39 26-66 (211)
83 1nn5_A Similar to deoxythymidy 97.8 4.6E-05 1.6E-09 66.2 8.2 30 3-32 10-40 (215)
84 3be4_A Adenylate kinase; malar 97.8 3.3E-05 1.1E-09 68.3 7.2 34 4-40 7-41 (217)
85 3tau_A Guanylate kinase, GMP k 97.8 4.1E-06 1.4E-10 74.0 1.1 51 120-179 122-173 (208)
86 3uie_A Adenylyl-sulfate kinase 97.6 4E-05 1.4E-09 66.8 5.0 38 3-40 26-66 (200)
87 3gmt_A Adenylate kinase; ssgci 97.6 5.5E-05 1.9E-09 69.0 5.9 108 5-139 11-132 (230)
88 4eaq_A DTMP kinase, thymidylat 97.6 0.00032 1.1E-08 63.1 10.6 32 3-35 27-59 (229)
89 1ak2_A Adenylate kinase isoenz 97.6 4E-05 1.4E-09 68.6 4.0 34 4-40 18-52 (233)
90 1x6v_B Bifunctional 3'-phospho 97.6 5.3E-05 1.8E-09 78.4 5.3 34 3-36 53-87 (630)
91 2axn_A 6-phosphofructo-2-kinas 97.5 0.00011 3.7E-09 74.3 6.8 38 2-39 35-75 (520)
92 1gtv_A TMK, thymidylate kinase 97.5 9.8E-06 3.4E-10 70.6 -1.5 36 4-39 2-40 (214)
93 2gks_A Bifunctional SAT/APS ki 97.5 0.00021 7E-09 72.7 7.8 36 3-38 373-411 (546)
94 1dek_A Deoxynucleoside monopho 97.4 1.4E-05 4.7E-10 73.3 -0.8 58 116-179 166-224 (241)
95 2yvu_A Probable adenylyl-sulfa 97.4 0.00023 7.9E-09 60.9 6.7 37 3-39 14-53 (186)
96 3sr0_A Adenylate kinase; phosp 97.4 0.00013 4.5E-09 65.0 5.2 35 4-41 2-37 (206)
97 2ocp_A DGK, deoxyguanosine kin 97.3 7.2E-06 2.5E-10 73.7 -4.2 46 117-167 149-196 (241)
98 3a8t_A Adenylate isopentenyltr 97.1 0.00081 2.8E-08 64.6 7.5 35 3-40 41-76 (339)
99 3zvl_A Bifunctional polynucleo 97.1 0.00092 3.1E-08 65.4 7.6 106 3-155 259-376 (416)
100 1m8p_A Sulfate adenylyltransfe 97.0 0.00085 2.9E-08 68.6 6.9 38 3-40 397-438 (573)
101 3crm_A TRNA delta(2)-isopenten 97.0 0.00031 1.1E-08 67.1 3.4 38 1-41 4-42 (323)
102 4hlc_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 60.8 4.4 27 1-27 1-28 (205)
103 2bdt_A BH3686; alpha-beta prot 97.0 0.00027 9.1E-09 60.6 2.2 38 1-40 1-39 (189)
104 3cr8_A Sulfate adenylyltranfer 96.9 0.00039 1.3E-08 70.9 3.3 37 3-39 370-410 (552)
105 3exa_A TRNA delta(2)-isopenten 96.9 0.00065 2.2E-08 64.8 4.2 37 2-41 3-42 (322)
106 1ex7_A Guanylate kinase; subst 96.9 0.00069 2.4E-08 59.5 4.0 135 3-156 2-149 (186)
107 1bif_A 6-phosphofructo-2-kinas 96.8 0.0021 7.2E-08 63.6 7.5 36 2-37 39-77 (469)
108 3eph_A TRNA isopentenyltransfe 96.7 0.00087 3E-08 65.9 4.0 37 2-41 2-41 (409)
109 3lv8_A DTMP kinase, thymidylat 96.7 0.001 3.6E-08 60.5 4.1 28 3-30 28-56 (236)
110 3ch4_B Pmkase, phosphomevalona 96.7 0.0013 4.6E-08 58.6 4.5 152 2-181 11-175 (202)
111 1zp6_A Hypothetical protein AT 96.6 0.00061 2.1E-08 58.1 2.0 37 3-40 10-47 (191)
112 1gvn_B Zeta; postsegregational 96.6 0.00094 3.2E-08 62.1 3.2 38 2-40 33-71 (287)
113 3hjn_A DTMP kinase, thymidylat 96.6 0.00047 1.6E-08 60.7 0.9 31 4-34 2-33 (197)
114 3foz_A TRNA delta(2)-isopenten 96.5 0.0013 4.5E-08 62.5 3.5 36 1-39 9-45 (316)
115 3ld9_A DTMP kinase, thymidylat 96.5 0.0002 6.8E-09 64.8 -2.1 25 3-27 22-47 (223)
116 2p5t_B PEZT; postsegregational 96.5 0.0013 4.4E-08 59.6 3.1 37 3-40 33-70 (253)
117 2v54_A DTMP kinase, thymidylat 96.3 0.0011 3.6E-08 57.1 1.5 32 3-36 5-37 (204)
118 1kgd_A CASK, peripheral plasma 96.0 0.0021 7.3E-08 54.9 1.8 24 2-25 5-29 (180)
119 1xjc_A MOBB protein homolog; s 95.8 0.0044 1.5E-07 53.6 2.8 35 3-37 5-42 (169)
120 1np6_A Molybdopterin-guanine d 95.7 0.0052 1.8E-07 53.1 2.9 36 1-36 5-43 (174)
121 2f1r_A Molybdopterin-guanine d 95.7 0.0021 7.2E-08 55.5 0.4 38 1-38 1-41 (171)
122 1vma_A Cell division protein F 95.5 0.0065 2.2E-07 57.2 3.2 36 3-38 105-143 (306)
123 3dm5_A SRP54, signal recogniti 95.4 0.0085 2.9E-07 59.5 3.5 37 3-39 101-140 (443)
124 3kl4_A SRP54, signal recogniti 95.2 0.008 2.7E-07 59.5 2.8 36 3-38 98-136 (433)
125 2kjq_A DNAA-related protein; s 95.1 0.019 6.4E-07 48.0 4.5 37 3-39 37-76 (149)
126 2bbw_A Adenylate kinase 4, AK4 95.0 0.0072 2.5E-07 54.0 1.7 35 3-40 28-63 (246)
127 1rj9_A FTSY, signal recognitio 95.0 0.01 3.6E-07 55.7 2.9 37 3-39 103-142 (304)
128 2px0_A Flagellar biosynthesis 95.0 0.011 3.7E-07 55.3 2.8 36 3-38 106-145 (296)
129 3b9q_A Chloroplast SRP recepto 94.9 0.012 4E-07 55.2 2.9 36 3-38 101-139 (302)
130 2ehv_A Hypothetical protein PH 94.9 0.014 4.9E-07 51.2 3.3 35 3-37 31-69 (251)
131 1znw_A Guanylate kinase, GMP k 94.9 0.0086 2.9E-07 52.2 1.7 24 3-26 21-45 (207)
132 1zu4_A FTSY; GTPase, signal re 94.9 0.013 4.6E-07 55.3 3.2 36 3-38 106-144 (320)
133 3e70_C DPA, signal recognition 94.8 0.013 4.5E-07 55.6 3.1 37 3-39 130-169 (328)
134 1nij_A Hypothetical protein YJ 94.7 0.017 5.7E-07 54.3 3.3 34 3-36 5-39 (318)
135 1lvg_A Guanylate kinase, GMP k 94.7 0.0077 2.6E-07 52.4 0.9 23 3-25 5-28 (198)
136 4edh_A DTMP kinase, thymidylat 94.5 0.016 5.4E-07 51.6 2.5 33 3-35 7-40 (213)
137 2og2_A Putative signal recogni 94.5 0.018 6E-07 55.6 2.9 36 3-38 158-196 (359)
138 1j8m_F SRP54, signal recogniti 94.5 0.03 1E-06 52.3 4.5 36 3-38 99-137 (297)
139 2v3c_C SRP54, signal recogniti 94.4 0.015 5.2E-07 57.3 2.4 37 3-39 100-139 (432)
140 3ec2_A DNA replication protein 94.4 0.01 3.5E-07 50.2 0.9 24 3-26 39-63 (180)
141 2eyu_A Twitching motility prot 94.3 0.02 7E-07 52.4 2.9 35 3-37 26-63 (261)
142 2qmh_A HPR kinase/phosphorylas 94.3 0.03 1E-06 50.0 3.8 36 3-41 35-70 (205)
143 4tmk_A Protein (thymidylate ki 94.2 0.015 5.3E-07 51.7 1.8 28 3-30 4-32 (213)
144 1z6g_A Guanylate kinase; struc 94.2 0.013 4.3E-07 51.9 1.1 23 3-25 24-47 (218)
145 3tif_A Uncharacterized ABC tra 94.2 0.013 4.4E-07 52.8 1.3 23 4-26 33-56 (235)
146 2yhs_A FTSY, cell division pro 94.2 0.02 7E-07 57.6 2.8 37 3-39 294-333 (503)
147 1ye8_A Protein THEP1, hypothet 94.1 0.017 5.8E-07 49.7 1.8 23 4-26 2-25 (178)
148 2i3b_A HCR-ntpase, human cance 94.1 0.013 4.3E-07 51.2 0.9 34 4-40 3-37 (189)
149 3p32_A Probable GTPase RV1496/ 94.1 0.03 1E-06 53.3 3.6 36 2-37 79-117 (355)
150 2cvh_A DNA repair and recombin 94.0 0.023 8E-07 48.9 2.6 34 3-37 21-55 (220)
151 1s96_A Guanylate kinase, GMP k 94.0 0.019 6.3E-07 51.3 1.8 24 3-26 17-41 (219)
152 2xxa_A Signal recognition part 94.0 0.03 1E-06 55.2 3.5 37 3-39 101-141 (433)
153 4g1u_C Hemin import ATP-bindin 93.9 0.018 6.1E-07 53.0 1.6 35 3-37 38-74 (266)
154 1yrb_A ATP(GTP)binding protein 93.9 0.037 1.3E-06 49.2 3.7 36 2-37 14-51 (262)
155 1g8f_A Sulfate adenylyltransfe 93.8 0.023 7.9E-07 57.3 2.4 35 3-37 396-435 (511)
156 2j37_W Signal recognition part 93.7 0.033 1.1E-06 56.1 3.3 37 3-39 102-141 (504)
157 1ls1_A Signal recognition part 93.7 0.035 1.2E-06 51.7 3.3 36 3-38 99-137 (295)
158 3jvv_A Twitching mobility prot 93.7 0.022 7.6E-07 54.7 1.9 25 3-27 124-149 (356)
159 3ney_A 55 kDa erythrocyte memb 93.7 0.022 7.4E-07 50.4 1.7 24 2-25 19-43 (197)
160 1c9k_A COBU, adenosylcobinamid 93.6 0.024 8.1E-07 49.5 1.8 21 4-24 1-22 (180)
161 2w0m_A SSO2452; RECA, SSPF, un 93.6 0.028 9.6E-07 48.5 2.2 35 3-37 24-61 (235)
162 4gp7_A Metallophosphoesterase; 93.6 0.019 6.5E-07 48.6 1.1 32 3-38 10-41 (171)
163 2ffh_A Protein (FFH); SRP54, s 93.6 0.04 1.4E-06 54.3 3.5 36 3-38 99-137 (425)
164 1htw_A HI0065; nucleotide-bind 93.3 0.028 9.6E-07 47.6 1.7 23 3-25 34-57 (158)
165 4a74_A DNA repair and recombin 93.2 0.028 9.5E-07 48.7 1.6 23 3-25 26-49 (231)
166 1p5z_B DCK, deoxycytidine kina 93.2 0.021 7.2E-07 51.5 0.8 22 117-138 174-195 (263)
167 3b85_A Phosphate starvation-in 93.1 0.05 1.7E-06 48.1 3.1 21 4-24 24-45 (208)
168 1n0w_A DNA repair protein RAD5 93.0 0.046 1.6E-06 47.7 2.7 35 3-37 25-68 (243)
169 2www_A Methylmalonic aciduria 93.0 0.05 1.7E-06 51.8 3.2 38 3-40 75-115 (349)
170 2wsm_A Hydrogenase expression/ 93.0 0.061 2.1E-06 46.4 3.4 35 3-37 31-67 (221)
171 3kjh_A CO dehydrogenase/acetyl 92.9 0.032 1.1E-06 48.8 1.5 35 1-37 1-38 (254)
172 2onk_A Molybdate/tungstate ABC 92.8 0.031 1.1E-06 50.6 1.3 24 4-27 26-50 (240)
173 2pcj_A ABC transporter, lipopr 92.8 0.029 1E-06 50.0 1.2 23 4-26 32-55 (224)
174 2ewv_A Twitching motility prot 92.8 0.04 1.4E-06 53.0 2.2 25 3-27 137-162 (372)
175 3v9p_A DTMP kinase, thymidylat 92.8 0.035 1.2E-06 50.0 1.6 26 3-28 26-52 (227)
176 1p9r_A General secretion pathw 92.8 0.043 1.5E-06 53.8 2.4 26 3-28 168-194 (418)
177 2qm8_A GTPase/ATPase; G protei 92.7 0.062 2.1E-06 50.9 3.4 36 3-38 56-94 (337)
178 2ghi_A Transport protein; mult 92.6 0.028 9.6E-07 51.3 0.8 23 4-26 48-71 (260)
179 3gfo_A Cobalt import ATP-bindi 92.6 0.034 1.2E-06 51.4 1.3 23 4-26 36-59 (275)
180 3bos_A Putative DNA replicatio 92.6 0.058 2E-06 46.6 2.7 36 3-38 53-91 (242)
181 2ixe_A Antigen peptide transpo 92.5 0.05 1.7E-06 50.0 2.4 23 4-26 47-70 (271)
182 2qi9_C Vitamin B12 import ATP- 92.5 0.036 1.2E-06 50.4 1.4 23 4-26 28-51 (249)
183 1b0u_A Histidine permease; ABC 92.5 0.03 1E-06 51.2 0.8 23 4-26 34-57 (262)
184 2gza_A Type IV secretion syste 92.4 0.044 1.5E-06 52.4 1.9 32 3-34 176-209 (361)
185 3tui_C Methionine import ATP-b 92.4 0.046 1.6E-06 52.9 1.9 37 4-40 56-94 (366)
186 2dr3_A UPF0273 protein PH0284; 92.3 0.066 2.3E-06 46.7 2.8 35 3-37 24-61 (247)
187 1lw7_A Transcriptional regulat 92.3 0.042 1.4E-06 52.3 1.6 25 2-26 170-195 (365)
188 2afh_E Nitrogenase iron protei 92.3 0.07 2.4E-06 48.6 3.0 37 1-38 2-41 (289)
189 3hr8_A Protein RECA; alpha and 92.3 0.12 4.2E-06 49.6 4.8 36 3-38 62-100 (356)
190 2p67_A LAO/AO transport system 92.2 0.067 2.3E-06 50.5 2.9 37 3-39 57-96 (341)
191 4dzz_A Plasmid partitioning pr 92.2 0.059 2E-06 45.9 2.3 36 1-37 1-40 (206)
192 2oap_1 GSPE-2, type II secreti 92.2 0.045 1.6E-06 55.0 1.7 32 3-34 261-294 (511)
193 1cr0_A DNA primase/helicase; R 92.1 0.067 2.3E-06 48.9 2.7 35 3-37 36-74 (296)
194 1jbk_A CLPB protein; beta barr 92.1 0.069 2.3E-06 43.9 2.5 24 4-27 45-69 (195)
195 1g6h_A High-affinity branched- 92.1 0.042 1.4E-06 50.0 1.3 23 4-26 35-58 (257)
196 3zq6_A Putative arsenical pump 92.1 0.073 2.5E-06 49.9 2.9 38 1-38 13-53 (324)
197 1g3q_A MIND ATPase, cell divis 92.0 0.09 3.1E-06 45.9 3.3 38 1-38 1-42 (237)
198 1ixz_A ATP-dependent metallopr 92.0 0.059 2E-06 48.0 2.1 31 5-36 52-83 (254)
199 1ji0_A ABC transporter; ATP bi 92.0 0.044 1.5E-06 49.3 1.3 23 4-26 34-57 (240)
200 2olj_A Amino acid ABC transpor 92.0 0.038 1.3E-06 50.8 0.8 23 4-26 52-75 (263)
201 3fwy_A Light-independent proto 92.0 0.079 2.7E-06 49.8 3.1 37 2-38 48-87 (314)
202 2v9p_A Replication protein E1; 91.9 0.049 1.7E-06 51.3 1.6 23 3-25 127-150 (305)
203 1cp2_A CP2, nitrogenase iron p 91.9 0.086 2.9E-06 47.1 3.1 37 2-38 1-40 (269)
204 2pze_A Cystic fibrosis transme 91.9 0.047 1.6E-06 48.8 1.3 23 4-26 36-59 (229)
205 3q9l_A Septum site-determining 91.9 0.081 2.8E-06 46.8 2.9 38 1-38 1-42 (260)
206 2pt7_A CAG-ALFA; ATPase, prote 91.8 0.05 1.7E-06 51.5 1.5 32 3-34 172-205 (330)
207 3pfi_A Holliday junction ATP-d 91.7 1.4 4.7E-05 40.5 11.3 33 4-37 57-90 (338)
208 1nlf_A Regulatory protein REPA 91.6 0.094 3.2E-06 47.6 3.1 24 3-26 31-55 (279)
209 3end_A Light-independent proto 91.6 0.091 3.1E-06 48.2 3.0 35 3-37 42-79 (307)
210 2ihy_A ABC transporter, ATP-bi 91.6 0.045 1.5E-06 50.7 0.8 23 4-26 49-72 (279)
211 2nq2_C Hypothetical ABC transp 91.6 0.044 1.5E-06 49.9 0.8 23 4-26 33-56 (253)
212 3nh6_A ATP-binding cassette SU 91.6 0.031 1.1E-06 52.6 -0.2 22 4-25 82-104 (306)
213 3sop_A Neuronal-specific septi 91.4 0.062 2.1E-06 49.3 1.6 25 3-27 3-28 (270)
214 1hyq_A MIND, cell division inh 91.4 0.11 3.9E-06 46.2 3.3 38 1-38 1-42 (263)
215 1lv7_A FTSH; alpha/beta domain 91.3 0.097 3.3E-06 46.6 2.7 23 4-26 47-70 (257)
216 2p65_A Hypothetical protein PF 91.3 0.076 2.6E-06 43.8 1.9 24 4-27 45-69 (187)
217 3ug7_A Arsenical pump-driving 91.2 0.12 3.9E-06 49.2 3.3 39 1-39 25-66 (349)
218 2pjz_A Hypothetical protein ST 91.0 0.084 2.9E-06 48.4 2.1 22 4-25 32-54 (263)
219 2x8a_A Nuclear valosin-contain 91.0 0.097 3.3E-06 47.9 2.5 33 5-38 47-80 (274)
220 3rlf_A Maltose/maltodextrin im 90.9 0.078 2.7E-06 51.5 1.9 24 4-27 31-55 (381)
221 3tmk_A Thymidylate kinase; pho 90.9 0.11 3.8E-06 46.3 2.7 25 3-27 6-31 (216)
222 1d2n_A N-ethylmaleimide-sensit 90.9 0.094 3.2E-06 47.2 2.2 35 4-38 66-101 (272)
223 1iy2_A ATP-dependent metallopr 90.8 0.091 3.1E-06 47.6 2.1 22 5-26 76-98 (278)
224 3fvq_A Fe(3+) IONS import ATP- 90.8 0.069 2.3E-06 51.5 1.3 24 4-27 32-56 (359)
225 2w58_A DNAI, primosome compone 90.6 0.095 3.3E-06 44.7 1.9 35 3-37 55-92 (202)
226 2hf9_A Probable hydrogenase ni 90.5 0.15 5E-06 44.1 3.0 34 3-36 39-74 (226)
227 1svm_A Large T antigen; AAA+ f 90.5 0.085 2.9E-06 51.1 1.6 24 3-26 170-194 (377)
228 3gd7_A Fusion complex of cysti 90.4 0.08 2.7E-06 51.5 1.4 23 4-26 49-72 (390)
229 3qf4_B Uncharacterized ABC tra 90.3 0.12 4.2E-06 52.6 2.7 23 3-25 382-405 (598)
230 2cbz_A Multidrug resistance-as 90.3 0.093 3.2E-06 47.1 1.6 22 4-25 33-55 (237)
231 1fnn_A CDC6P, cell division co 90.2 0.14 4.6E-06 47.8 2.7 33 4-36 46-80 (389)
232 4fcw_A Chaperone protein CLPB; 90.1 0.1 3.5E-06 47.4 1.8 36 3-38 48-86 (311)
233 2xj4_A MIPZ; replication, cell 90.1 0.15 5.2E-06 46.5 2.9 37 1-37 3-43 (286)
234 3kta_A Chromosome segregation 90.0 0.11 3.7E-06 43.6 1.7 23 4-26 28-51 (182)
235 1mv5_A LMRA, multidrug resista 90.0 0.1 3.5E-06 46.9 1.7 24 3-26 29-53 (243)
236 1l8q_A Chromosomal replication 89.9 0.11 3.8E-06 48.0 1.9 35 4-38 39-76 (324)
237 2ff7_A Alpha-hemolysin translo 89.9 0.1 3.6E-06 47.1 1.6 23 4-26 37-60 (247)
238 1z47_A CYSA, putative ABC-tran 89.6 0.099 3.4E-06 50.2 1.3 24 4-27 43-67 (355)
239 3b5x_A Lipid A export ATP-bind 89.6 0.14 4.9E-06 51.8 2.5 23 4-26 371-394 (582)
240 1tf7_A KAIC; homohexamer, hexa 89.5 0.17 5.9E-06 50.5 3.1 35 3-37 40-78 (525)
241 2npi_A Protein CLP1; CLP1-PCF1 89.5 0.099 3.4E-06 51.9 1.3 33 4-36 140-176 (460)
242 1in4_A RUVB, holliday junction 89.5 0.11 3.6E-06 48.8 1.4 33 4-37 53-86 (334)
243 2yl4_A ATP-binding cassette SU 89.4 0.14 4.9E-06 52.0 2.4 22 4-25 372-394 (595)
244 1pzn_A RAD51, DNA repair and r 89.4 0.18 6.2E-06 47.9 3.0 23 3-25 132-155 (349)
245 2qz4_A Paraplegin; AAA+, SPG7, 89.4 0.13 4.6E-06 45.3 1.9 34 4-38 41-75 (262)
246 2it1_A 362AA long hypothetical 89.4 0.11 3.6E-06 50.1 1.3 24 4-27 31-55 (362)
247 3h4m_A Proteasome-activating n 89.3 0.12 4.1E-06 46.5 1.5 34 4-38 53-87 (285)
248 1ofh_A ATP-dependent HSL prote 89.3 0.2 7E-06 45.1 3.1 34 5-39 53-87 (310)
249 2d2e_A SUFC protein; ABC-ATPas 89.3 0.12 4.1E-06 46.7 1.5 21 4-24 31-52 (250)
250 2yyz_A Sugar ABC transporter, 89.2 0.13 4.4E-06 49.5 1.8 23 4-26 31-54 (359)
251 1v43_A Sugar-binding transport 89.2 0.11 3.8E-06 50.1 1.3 23 4-26 39-62 (372)
252 2dpy_A FLII, flagellum-specifi 89.2 0.16 5.6E-06 49.9 2.6 33 4-37 159-192 (438)
253 1vpl_A ABC transporter, ATP-bi 89.2 0.13 4.4E-06 46.9 1.7 23 4-26 43-66 (256)
254 4ag6_A VIRB4 ATPase, type IV s 89.2 0.14 4.8E-06 48.9 2.0 32 5-36 38-70 (392)
255 1g29_1 MALK, maltose transport 89.1 0.11 3.8E-06 50.1 1.3 24 4-27 31-55 (372)
256 1sgw_A Putative ABC transporte 89.1 0.11 3.7E-06 46.2 1.1 23 4-26 37-60 (214)
257 3tqf_A HPR(Ser) kinase; transf 89.1 0.16 5.5E-06 44.4 2.1 30 4-36 18-47 (181)
258 4f4c_A Multidrug resistance pr 89.1 0.32 1.1E-05 54.2 5.0 22 4-25 1107-1129(1321)
259 1p6x_A Thymidine kinase; P-loo 89.0 0.19 6.6E-06 47.8 2.8 26 3-28 8-34 (334)
260 2obl_A ESCN; ATPase, hydrolase 89.0 0.2 6.7E-06 47.8 2.8 32 4-36 73-105 (347)
261 2yz2_A Putative ABC transporte 88.9 0.14 4.6E-06 46.8 1.6 23 4-26 35-58 (266)
262 1xwi_A SKD1 protein; VPS4B, AA 88.7 0.2 6.8E-06 46.8 2.7 36 4-39 47-83 (322)
263 1e2k_A Thymidine kinase; trans 88.7 0.14 4.8E-06 48.7 1.6 26 4-29 6-32 (331)
264 2zu0_C Probable ATP-dependent 88.6 0.14 4.9E-06 46.8 1.6 21 4-24 48-69 (267)
265 1of1_A Thymidine kinase; trans 88.6 0.17 5.8E-06 49.1 2.1 26 4-29 51-77 (376)
266 3iqw_A Tail-anchored protein t 88.5 0.25 8.5E-06 46.8 3.2 36 2-37 16-54 (334)
267 3n70_A Transport activator; si 88.3 0.13 4.5E-06 42.0 1.0 21 5-25 27-48 (145)
268 3b60_A Lipid A export ATP-bind 88.3 0.13 4.5E-06 52.1 1.1 23 4-26 371-394 (582)
269 1njg_A DNA polymerase III subu 88.1 0.17 5.9E-06 42.9 1.7 25 3-27 46-71 (250)
270 3b9p_A CG5977-PA, isoform A; A 88.1 0.16 5.6E-06 46.0 1.6 24 3-26 55-79 (297)
271 3ea0_A ATPase, para family; al 88.0 0.34 1.1E-05 42.3 3.5 37 2-38 4-45 (245)
272 3t15_A Ribulose bisphosphate c 87.9 0.21 7.2E-06 46.0 2.2 35 3-38 37-72 (293)
273 3d31_A Sulfate/molybdate ABC t 87.9 0.12 4E-06 49.5 0.5 24 4-27 28-52 (348)
274 3cio_A ETK, tyrosine-protein k 87.7 0.24 8.1E-06 45.9 2.5 35 3-37 105-143 (299)
275 3bfv_A CAPA1, CAPB2, membrane 87.7 0.26 8.8E-06 45.0 2.7 35 3-37 83-121 (271)
276 2bjv_A PSP operon transcriptio 87.6 0.21 7.3E-06 44.6 2.0 24 4-27 31-55 (265)
277 2zr9_A Protein RECA, recombina 87.5 0.27 9.1E-06 46.8 2.8 35 3-37 62-99 (349)
278 3k9g_A PF-32 protein; ssgcid, 87.5 0.25 8.6E-06 44.1 2.4 36 3-38 28-66 (267)
279 3syl_A Protein CBBX; photosynt 87.4 0.19 6.6E-06 45.6 1.6 24 4-27 69-93 (309)
280 1oxx_K GLCV, glucose, ABC tran 87.4 0.087 3E-06 50.5 -0.7 24 4-27 33-57 (353)
281 4a82_A Cystic fibrosis transme 87.3 0.11 3.7E-06 52.8 -0.2 20 4-26 369-388 (578)
282 3euj_A Chromosome partition pr 87.3 0.21 7.2E-06 49.9 1.9 24 4-27 31-55 (483)
283 2ph1_A Nucleotide-binding prot 87.1 0.33 1.1E-05 43.5 3.0 39 1-39 17-59 (262)
284 3qf4_A ABC transporter, ATP-bi 87.1 0.14 4.9E-06 52.0 0.6 20 4-26 371-390 (587)
285 3cf0_A Transitional endoplasmi 87.1 0.19 6.6E-06 46.2 1.5 23 4-26 51-74 (301)
286 1v5w_A DMC1, meiotic recombina 87.0 0.36 1.2E-05 45.6 3.3 36 3-38 123-167 (343)
287 1osn_A Thymidine kinase, VZV-T 86.9 0.35 1.2E-05 46.2 3.2 26 4-29 14-41 (341)
288 2chg_A Replication factor C sm 86.7 0.21 7.3E-06 41.9 1.4 22 5-26 41-63 (226)
289 2qby_A CDC6 homolog 1, cell di 86.6 0.21 7E-06 46.2 1.4 24 3-26 46-70 (386)
290 2v1u_A Cell division control p 86.5 0.21 7.2E-06 46.3 1.4 23 4-26 46-69 (387)
291 2bbs_A Cystic fibrosis transme 86.4 0.22 7.5E-06 46.3 1.4 22 4-25 66-88 (290)
292 2z43_A DNA repair and recombin 86.2 0.35 1.2E-05 45.1 2.8 36 3-38 108-152 (324)
293 2woo_A ATPase GET3; tail-ancho 86.2 0.38 1.3E-05 45.1 3.0 38 2-39 19-59 (329)
294 3ozx_A RNAse L inhibitor; ATP 86.2 0.18 6.3E-06 50.9 0.8 23 4-26 296-319 (538)
295 2oze_A ORF delta'; para, walke 86.1 0.21 7.1E-06 45.5 1.1 36 3-38 35-76 (298)
296 1yqt_A RNAse L inhibitor; ATP- 86.1 0.22 7.6E-06 50.2 1.4 23 4-26 49-72 (538)
297 1xx6_A Thymidine kinase; NESG, 86.0 0.48 1.6E-05 41.3 3.4 32 3-34 9-43 (191)
298 3hws_A ATP-dependent CLP prote 86.0 0.23 8E-06 46.7 1.4 24 4-27 53-77 (363)
299 2qby_B CDC6 homolog 3, cell di 86.0 0.24 8.1E-06 46.2 1.5 24 3-26 46-70 (384)
300 1oix_A RAS-related protein RAB 85.8 0.28 9.6E-06 41.5 1.7 21 3-26 30-50 (191)
301 1ihu_A Arsenical pump-driving 85.7 0.36 1.2E-05 48.7 2.8 36 2-37 8-46 (589)
302 2b8t_A Thymidine kinase; deoxy 85.7 0.4 1.4E-05 42.9 2.8 31 3-33 13-46 (223)
303 3ozx_A RNAse L inhibitor; ATP 85.6 0.21 7.1E-06 50.5 0.9 24 3-26 26-50 (538)
304 1tue_A Replication protein E1; 85.4 0.21 7.1E-06 44.8 0.7 24 4-27 60-84 (212)
305 3j16_B RLI1P; ribosome recycli 85.4 0.25 8.5E-06 50.7 1.4 24 3-26 379-403 (608)
306 3lda_A DNA repair protein RAD5 85.4 0.42 1.4E-05 46.5 2.9 35 3-37 179-222 (400)
307 2r2a_A Uncharacterized protein 85.4 0.5 1.7E-05 41.3 3.2 18 3-20 6-24 (199)
308 1tq4_A IIGP1, interferon-induc 85.2 0.27 9.2E-06 48.1 1.5 23 3-25 70-93 (413)
309 3j16_B RLI1P; ribosome recycli 85.2 0.26 8.9E-06 50.6 1.4 24 4-27 105-129 (608)
310 3m6a_A ATP-dependent protease 85.1 0.25 8.7E-06 49.7 1.3 33 4-37 110-143 (543)
311 2ce2_X GTPase HRAS; signaling 85.0 0.34 1.2E-05 38.6 1.8 23 1-26 1-24 (166)
312 3ez9_A Para; DNA binding, wing 85.0 0.48 1.6E-05 45.4 3.1 35 3-37 112-156 (403)
313 1u94_A RECA protein, recombina 84.9 0.43 1.5E-05 45.6 2.7 35 3-37 64-101 (356)
314 1yqt_A RNAse L inhibitor; ATP- 84.8 0.27 9.4E-06 49.5 1.3 23 4-26 314-337 (538)
315 1um8_A ATP-dependent CLP prote 84.8 0.52 1.8E-05 44.4 3.3 23 4-26 74-97 (376)
316 2zan_A Vacuolar protein sortin 84.7 0.37 1.3E-05 47.1 2.2 35 4-38 169-204 (444)
317 3io3_A DEHA2D07832P; chaperone 84.5 0.49 1.7E-05 45.1 2.9 35 3-37 19-58 (348)
318 1e9r_A Conjugal transfer prote 84.4 0.38 1.3E-05 46.4 2.1 32 5-36 56-88 (437)
319 2orw_A Thymidine kinase; TMTK, 84.3 0.43 1.5E-05 41.0 2.2 23 3-25 4-27 (184)
320 1w4r_A Thymidine kinase; type 84.2 0.71 2.4E-05 40.7 3.6 34 1-34 19-55 (195)
321 3pg5_A Uncharacterized protein 84.2 0.23 7.9E-06 47.2 0.5 38 1-38 1-41 (361)
322 1byi_A Dethiobiotin synthase; 84.1 0.44 1.5E-05 41.1 2.2 31 3-33 2-36 (224)
323 2z4s_A Chromosomal replication 84.1 0.36 1.2E-05 47.2 1.8 35 4-38 132-171 (440)
324 3ez2_A Plasmid partition prote 84.0 0.44 1.5E-05 45.5 2.4 35 3-37 109-153 (398)
325 2dhr_A FTSH; AAA+ protein, hex 83.9 0.55 1.9E-05 47.0 3.1 34 5-39 67-101 (499)
326 1sxj_E Activator 1 40 kDa subu 83.8 0.28 9.7E-06 45.4 0.9 21 5-25 39-60 (354)
327 3bk7_A ABC transporter ATP-bin 83.8 0.28 9.5E-06 50.3 0.9 23 4-26 119-142 (607)
328 2r8r_A Sensor protein; KDPD, P 83.8 0.64 2.2E-05 42.0 3.2 36 2-37 6-44 (228)
329 2f9l_A RAB11B, member RAS onco 83.8 0.41 1.4E-05 40.5 1.8 21 3-26 6-26 (199)
330 1ko7_A HPR kinase/phosphatase; 83.7 0.44 1.5E-05 45.0 2.2 29 3-34 145-173 (314)
331 3io5_A Recombination and repai 83.6 1 3.5E-05 42.9 4.7 34 4-37 30-68 (333)
332 3bk7_A ABC transporter ATP-bin 83.6 0.33 1.1E-05 49.7 1.3 23 4-26 384-407 (607)
333 1wcv_1 SOJ, segregation protei 83.6 0.32 1.1E-05 43.3 1.1 35 3-37 7-45 (257)
334 2fna_A Conserved hypothetical 83.4 0.62 2.1E-05 42.4 3.0 35 3-38 31-66 (357)
335 1sxj_A Activator 1 95 kDa subu 83.1 0.52 1.8E-05 46.9 2.5 23 3-25 78-101 (516)
336 1knx_A Probable HPR(Ser) kinas 82.9 0.49 1.7E-05 44.6 2.1 31 4-37 149-179 (312)
337 3eie_A Vacuolar protein sortin 82.8 0.32 1.1E-05 45.1 0.8 33 4-37 53-86 (322)
338 1sxj_C Activator 1 40 kDa subu 82.7 0.39 1.3E-05 44.7 1.3 23 5-27 49-72 (340)
339 1pui_A ENGB, probable GTP-bind 82.6 0.42 1.4E-05 40.5 1.4 22 3-27 27-48 (210)
340 1tf7_A KAIC; homohexamer, hexa 82.5 0.67 2.3E-05 46.2 3.1 25 3-27 282-307 (525)
341 1hqc_A RUVB; extended AAA-ATPa 82.5 0.52 1.8E-05 42.9 2.1 34 4-38 40-74 (324)
342 3fkq_A NTRC-like two-domain pr 82.4 0.52 1.8E-05 44.8 2.1 35 3-37 144-182 (373)
343 2woj_A ATPase GET3; tail-ancho 82.4 0.66 2.3E-05 44.1 2.9 37 2-38 18-59 (354)
344 2qgz_A Helicase loader, putati 82.4 0.44 1.5E-05 44.3 1.6 34 3-36 153-190 (308)
345 2r62_A Cell division protease 82.1 0.22 7.7E-06 44.3 -0.5 22 5-26 47-69 (268)
346 1g8p_A Magnesium-chelatase 38 82.1 0.52 1.8E-05 43.3 2.0 22 5-26 48-70 (350)
347 2dyk_A GTP-binding protein; GT 82.0 0.55 1.9E-05 37.5 1.9 20 4-26 3-22 (161)
348 2wji_A Ferrous iron transport 81.8 0.58 2E-05 38.2 2.0 22 3-27 4-25 (165)
349 1g41_A Heat shock protein HSLU 81.7 0.78 2.7E-05 45.3 3.1 34 5-39 53-87 (444)
350 2i1q_A DNA repair and recombin 81.6 0.68 2.3E-05 42.8 2.6 21 3-23 99-120 (322)
351 3d8b_A Fidgetin-like protein 1 81.4 0.56 1.9E-05 44.2 2.0 34 4-38 119-153 (357)
352 3uk6_A RUVB-like 2; hexameric 81.4 0.45 1.5E-05 44.3 1.2 34 4-37 72-107 (368)
353 2qag_B Septin-6, protein NEDD5 81.4 0.58 2E-05 46.0 2.1 20 5-24 45-65 (427)
354 2yv5_A YJEQ protein; hydrolase 80.9 0.52 1.8E-05 43.7 1.5 20 3-22 166-186 (302)
355 1sxj_D Activator 1 41 kDa subu 80.7 0.52 1.8E-05 43.3 1.4 22 5-26 61-83 (353)
356 4b4t_K 26S protease regulatory 80.7 0.61 2.1E-05 45.9 2.0 33 4-37 208-241 (428)
357 1kao_A RAP2A; GTP-binding prot 80.5 0.71 2.4E-05 36.8 2.0 23 1-26 1-24 (167)
358 3k1j_A LON protease, ATP-depen 80.5 0.75 2.6E-05 46.7 2.6 25 4-28 62-87 (604)
359 2qp9_X Vacuolar protein sortin 80.3 0.45 1.5E-05 45.0 0.8 22 5-26 87-109 (355)
360 2vhj_A Ntpase P4, P4; non- hyd 80.3 0.64 2.2E-05 44.3 1.9 32 3-35 124-156 (331)
361 1c1y_A RAS-related protein RAP 80.3 0.72 2.4E-05 36.9 2.0 23 1-26 1-24 (167)
362 3cwq_A Para family chromosome 80.1 1.1 3.9E-05 38.7 3.3 35 4-38 2-39 (209)
363 1qhl_A Protein (cell division 80.1 0.087 3E-06 47.4 -4.0 24 4-27 29-53 (227)
364 2c9o_A RUVB-like 1; hexameric 80.1 0.75 2.6E-05 44.9 2.4 24 4-27 65-89 (456)
365 1u0l_A Probable GTPase ENGC; p 80.0 0.6 2E-05 43.1 1.6 21 3-26 170-190 (301)
366 2ged_A SR-beta, signal recogni 80.0 0.62 2.1E-05 38.7 1.5 22 3-27 49-70 (193)
367 1xp8_A RECA protein, recombina 79.9 0.88 3E-05 43.6 2.8 35 3-37 75-112 (366)
368 4b4t_M 26S protease regulatory 79.9 0.8 2.7E-05 45.1 2.5 35 4-39 217-252 (434)
369 2ce7_A Cell division protein F 79.8 0.91 3.1E-05 45.1 2.9 34 5-39 52-86 (476)
370 4b4t_L 26S protease subunit RP 79.3 0.71 2.4E-05 45.5 1.9 34 4-38 217-251 (437)
371 1jr3_A DNA polymerase III subu 79.2 0.66 2.3E-05 42.9 1.6 24 4-27 40-64 (373)
372 2rcn_A Probable GTPase ENGC; Y 79.1 0.65 2.2E-05 44.6 1.6 22 3-24 216-238 (358)
373 3g5u_A MCG1178, multidrug resi 78.7 0.53 1.8E-05 52.3 0.9 20 4-26 418-437 (1284)
374 3vfd_A Spastin; ATPase, microt 78.6 0.6 2E-05 44.4 1.1 23 4-26 150-173 (389)
375 2r6a_A DNAB helicase, replicat 78.6 0.86 2.9E-05 44.5 2.3 35 3-37 204-242 (454)
376 3e1s_A Exodeoxyribonuclease V, 78.3 0.72 2.5E-05 46.8 1.6 26 3-28 205-231 (574)
377 2zts_A Putative uncharacterize 78.2 0.94 3.2E-05 39.2 2.2 35 3-37 31-69 (251)
378 3la6_A Tyrosine-protein kinase 78.2 1.4 4.9E-05 40.4 3.6 36 3-38 93-132 (286)
379 3pxg_A Negative regulator of g 78.1 0.94 3.2E-05 44.5 2.4 22 5-26 204-226 (468)
380 3qf7_A RAD50; ABC-ATPase, ATPa 78.0 0.77 2.6E-05 43.7 1.7 20 3-22 24-44 (365)
381 2wjg_A FEOB, ferrous iron tran 77.8 1.1 3.9E-05 36.8 2.5 22 3-27 8-29 (188)
382 3u61_B DNA polymerase accessor 77.7 1 3.5E-05 41.2 2.4 24 3-26 49-73 (324)
383 1iqp_A RFCS; clamp loader, ext 77.6 0.76 2.6E-05 41.5 1.5 22 5-26 49-71 (327)
384 3g5u_A MCG1178, multidrug resi 77.5 0.57 1.9E-05 52.0 0.7 22 4-25 1061-1083(1284)
385 4b4t_J 26S protease regulatory 77.4 0.85 2.9E-05 44.6 1.8 33 5-38 185-218 (405)
386 3ux8_A Excinuclease ABC, A sub 77.0 0.59 2E-05 48.0 0.6 14 4-17 46-59 (670)
387 2qen_A Walker-type ATPase; unk 76.9 1.1 3.6E-05 40.8 2.3 32 3-37 32-64 (350)
388 3bh0_A DNAB-like replicative h 76.9 1.2 4.2E-05 41.3 2.7 34 3-36 69-105 (315)
389 3igf_A ALL4481 protein; two-do 76.7 0.66 2.3E-05 44.7 0.8 35 1-35 1-38 (374)
390 3con_A GTPase NRAS; structural 76.7 0.96 3.3E-05 37.4 1.7 21 3-26 22-42 (190)
391 1ojl_A Transcriptional regulat 76.5 0.71 2.4E-05 42.7 1.0 22 5-26 28-50 (304)
392 2chq_A Replication factor C sm 76.5 0.82 2.8E-05 41.1 1.4 22 5-26 41-63 (319)
393 2zej_A Dardarin, leucine-rich 76.2 0.88 3E-05 37.9 1.4 22 3-27 3-24 (184)
394 2a5y_B CED-4; apoptosis; HET: 76.1 0.95 3.2E-05 45.2 1.8 21 3-23 153-174 (549)
395 2r44_A Uncharacterized protein 75.9 0.73 2.5E-05 42.4 0.9 23 5-27 49-72 (331)
396 3pvs_A Replication-associated 75.8 0.9 3.1E-05 44.6 1.5 23 4-26 52-75 (447)
397 3pxi_A Negative regulator of g 75.8 1.4 4.9E-05 45.7 3.1 37 4-40 523-562 (758)
398 1z6t_A APAF-1, apoptotic prote 75.7 0.88 3E-05 45.3 1.4 37 2-38 147-190 (591)
399 1ypw_A Transitional endoplasmi 75.7 0.77 2.6E-05 48.5 1.1 23 4-26 240-263 (806)
400 1nrj_B SR-beta, signal recogni 75.5 0.97 3.3E-05 38.5 1.5 21 3-26 13-33 (218)
401 3ux8_A Excinuclease ABC, A sub 75.5 0.81 2.8E-05 47.0 1.1 14 4-17 350-363 (670)
402 2orv_A Thymidine kinase; TP4A 75.4 1.8 6.3E-05 39.1 3.3 34 1-34 18-54 (234)
403 1ewq_A DNA mismatch repair pro 75.4 0.94 3.2E-05 47.7 1.6 22 3-24 577-599 (765)
404 1f2t_A RAD50 ABC-ATPase; DNA d 75.3 1 3.5E-05 37.1 1.6 15 3-17 24-38 (149)
405 4b4t_H 26S protease regulatory 75.2 1.2 4E-05 44.4 2.2 34 4-38 245-279 (467)
406 1z2a_A RAS-related protein RAB 75.1 0.95 3.2E-05 36.2 1.3 21 3-26 6-26 (168)
407 1ega_A Protein (GTP-binding pr 74.9 1.2 4.1E-05 41.0 2.1 26 3-31 9-34 (301)
408 1w5s_A Origin recognition comp 74.8 1 3.4E-05 42.2 1.5 24 4-27 52-78 (412)
409 3te6_A Regulatory protein SIR3 74.8 0.87 3E-05 42.9 1.1 36 4-39 47-90 (318)
410 3upu_A ATP-dependent DNA helic 74.7 1.2 4.1E-05 43.5 2.1 24 4-27 47-71 (459)
411 1r6b_X CLPA protein; AAA+, N-t 74.6 1.4 4.7E-05 45.7 2.6 35 4-39 490-525 (758)
412 1sxj_B Activator 1 37 kDa subu 74.5 1 3.5E-05 40.6 1.4 22 5-26 45-67 (323)
413 3llm_A ATP-dependent RNA helic 74.3 1.6 5.4E-05 38.3 2.6 15 3-17 77-91 (235)
414 1u8z_A RAS-related protein RAL 73.9 1.1 3.6E-05 35.7 1.3 21 3-26 5-25 (168)
415 1ky3_A GTP-binding protein YPT 73.8 1.1 3.7E-05 36.4 1.3 21 3-26 9-29 (182)
416 3co5_A Putative two-component 73.4 1 3.4E-05 36.6 1.0 21 5-28 30-50 (143)
417 3hu3_A Transitional endoplasmi 73.3 0.91 3.1E-05 45.2 0.8 23 4-26 240-263 (489)
418 2j9r_A Thymidine kinase; TK1, 73.2 2 6.9E-05 38.3 3.0 32 3-34 29-63 (214)
419 4a1f_A DNAB helicase, replicat 73.1 1.5 5.1E-05 41.6 2.3 35 3-37 47-84 (338)
420 1wb9_A DNA mismatch repair pro 73.1 1.1 3.9E-05 47.3 1.6 21 3-23 608-629 (800)
421 1t9h_A YLOQ, probable GTPase E 73.1 0.45 1.6E-05 44.6 -1.3 22 3-27 174-195 (307)
422 1e69_A Chromosome segregation 73.0 1.9 6.5E-05 39.9 2.9 20 4-23 26-46 (322)
423 1ek0_A Protein (GTP-binding pr 73.0 1.2 3.9E-05 35.7 1.3 20 4-26 5-24 (170)
424 3k53_A Ferrous iron transport 72.9 1.7 5.8E-05 39.0 2.5 22 3-27 4-25 (271)
425 1w1w_A Structural maintenance 72.8 1.3 4.5E-05 42.7 1.9 23 3-25 27-50 (430)
426 3pxi_A Negative regulator of g 72.8 1.5 5.2E-05 45.5 2.4 22 5-26 204-226 (758)
427 2erx_A GTP-binding protein DI- 72.6 1.2 4.1E-05 35.6 1.3 21 3-26 4-24 (172)
428 2lkc_A Translation initiation 72.5 1.3 4.5E-05 35.9 1.5 22 3-27 9-30 (178)
429 2q6t_A DNAB replication FORK h 72.5 1.8 6.3E-05 42.0 2.8 34 3-36 201-238 (444)
430 1g16_A RAS-related protein SEC 72.3 1.1 3.9E-05 35.8 1.1 21 3-26 4-24 (170)
431 1z0j_A RAB-22, RAS-related pro 72.2 1.3 4.3E-05 35.5 1.3 20 4-26 8-27 (170)
432 4b4t_I 26S protease regulatory 72.1 1.5 5E-05 43.3 2.0 34 4-38 218-252 (437)
433 3qks_A DNA double-strand break 72.1 1.4 4.8E-05 38.1 1.7 24 3-26 24-48 (203)
434 1wms_A RAB-9, RAB9, RAS-relate 72.0 1.3 4.4E-05 35.9 1.3 20 4-26 9-28 (177)
435 2nzj_A GTP-binding protein REM 71.8 1.3 4.4E-05 35.7 1.3 22 3-27 5-26 (175)
436 1upt_A ARL1, ADP-ribosylation 71.8 1.6 5.4E-05 35.1 1.8 21 3-26 8-28 (171)
437 3pqc_A Probable GTP-binding pr 71.8 1.1 3.9E-05 36.8 1.0 21 3-26 24-44 (195)
438 2gj8_A MNME, tRNA modification 71.7 1.2 4.1E-05 36.8 1.1 22 3-27 5-26 (172)
439 3lfu_A DNA helicase II; SF1 he 71.7 1.5 5.1E-05 44.1 2.0 23 5-27 25-49 (647)
440 3tw8_B RAS-related protein RAB 71.6 1.3 4.6E-05 35.8 1.4 22 3-27 10-31 (181)
441 3iby_A Ferrous iron transport 71.6 1.7 5.9E-05 39.0 2.2 22 4-28 3-24 (256)
442 4b3f_X DNA-binding protein smu 71.5 1.9 6.4E-05 44.1 2.7 24 4-27 207-232 (646)
443 3q85_A GTP-binding protein REM 71.5 1.3 4.4E-05 35.6 1.3 20 4-26 4-23 (169)
444 3q72_A GTP-binding protein RAD 71.3 1.2 4.2E-05 35.6 1.1 21 4-27 4-24 (166)
445 1z08_A RAS-related protein RAB 71.3 1.4 4.7E-05 35.4 1.4 21 3-26 7-27 (170)
446 3szr_A Interferon-induced GTP- 71.3 0.95 3.3E-05 46.2 0.4 22 4-25 47-69 (608)
447 2fn4_A P23, RAS-related protei 71.3 1.5 5E-05 35.6 1.5 21 3-26 10-30 (181)
448 3vkw_A Replicase large subunit 71.2 2.2 7.5E-05 42.2 3.0 22 2-25 161-182 (446)
449 3lxx_A GTPase IMAP family memb 71.1 1.7 5.9E-05 37.9 2.1 21 3-26 30-50 (239)
450 3i8s_A Ferrous iron transport 71.0 2.1 7.3E-05 38.7 2.7 23 2-27 3-25 (274)
451 4f4c_A Multidrug resistance pr 70.9 1.9 6.6E-05 48.0 2.8 20 4-26 446-465 (1321)
452 1qvr_A CLPB protein; coiled co 70.8 1.2 4.1E-05 47.1 1.1 36 4-39 590-628 (854)
453 1m2o_B GTP-binding protein SAR 70.7 1.3 4.5E-05 37.1 1.2 21 4-27 25-45 (190)
454 3ice_A Transcription terminati 70.5 1.4 4.7E-05 43.2 1.4 23 4-26 176-199 (422)
455 2qag_C Septin-7; cell cycle, c 70.1 1.4 4.9E-05 42.9 1.4 20 4-26 33-52 (418)
456 3bc1_A RAS-related protein RAB 70.0 1.5 5E-05 35.9 1.3 21 3-26 12-32 (195)
457 2ius_A DNA translocase FTSK; n 69.9 2.2 7.7E-05 42.8 2.8 32 5-36 170-206 (512)
458 1r2q_A RAS-related protein RAB 69.8 1.7 5.9E-05 34.6 1.6 21 3-26 7-27 (170)
459 4aby_A DNA repair protein RECN 69.8 0.6 2E-05 44.4 -1.4 23 4-26 62-85 (415)
460 1r8s_A ADP-ribosylation factor 69.7 1.5 5.2E-05 35.0 1.3 19 5-26 3-21 (164)
461 1w36_D RECD, exodeoxyribonucle 69.6 1.5 5.1E-05 44.7 1.5 25 2-26 164-189 (608)
462 1svi_A GTP-binding protein YSX 69.5 1.3 4.5E-05 36.6 0.9 21 3-26 24-44 (195)
463 3clv_A RAB5 protein, putative; 69.5 1.9 6.5E-05 35.3 1.9 21 3-26 8-28 (208)
464 2y8e_A RAB-protein 6, GH09086P 69.5 1.6 5.6E-05 35.1 1.5 20 4-26 16-35 (179)
465 4dsu_A GTPase KRAS, isoform 2B 69.3 1.8 6.2E-05 35.3 1.7 21 3-26 5-25 (189)
466 1jal_A YCHF protein; nucleotid 69.1 1.7 5.8E-05 41.7 1.7 24 1-27 1-24 (363)
467 1moz_A ARL1, ADP-ribosylation 69.0 1.6 5.4E-05 35.6 1.3 22 3-27 19-40 (183)
468 1qvr_A CLPB protein; coiled co 68.9 1.7 5.8E-05 46.0 1.7 22 5-26 194-216 (854)
469 1ni3_A YCHF GTPase, YCHF GTP-b 68.8 1.6 5.4E-05 42.3 1.4 21 3-23 21-42 (392)
470 2hxs_A RAB-26, RAS-related pro 68.7 1.7 5.6E-05 35.3 1.3 21 3-26 7-27 (178)
471 3t1o_A Gliding protein MGLA; G 68.7 1.7 5.8E-05 35.7 1.4 15 3-17 15-29 (198)
472 2a9k_A RAS-related protein RAL 68.0 1.7 5.8E-05 35.3 1.3 21 3-26 19-39 (187)
473 2vf7_A UVRA2, excinuclease ABC 67.9 1.5 5.2E-05 46.7 1.1 15 3-17 37-51 (842)
474 1fzq_A ADP-ribosylation factor 67.9 3.2 0.00011 34.3 3.0 22 3-27 17-38 (181)
475 2qu8_A Putative nucleolar GTP- 67.8 2.9 0.0001 36.0 2.8 24 3-29 30-53 (228)
476 2fu5_C RAS-related protein RAB 67.8 2 6.8E-05 35.1 1.6 21 3-26 9-29 (183)
477 1z0f_A RAB14, member RAS oncog 67.8 1.7 6E-05 35.0 1.3 21 3-26 16-36 (179)
478 2bov_A RAla, RAS-related prote 67.6 1.7 6E-05 36.1 1.3 20 4-26 16-35 (206)
479 2cxx_A Probable GTP-binding pr 67.6 1.5 5.2E-05 35.9 0.9 21 4-27 3-23 (190)
480 3pih_A Uvrabc system protein A 67.6 1.7 5.7E-05 46.8 1.4 15 3-17 25-39 (916)
481 3czq_A Putative polyphosphate 67.5 2.9 0.0001 39.2 2.9 34 2-35 86-120 (304)
482 2bme_A RAB4A, RAS-related prot 67.4 1.7 5.7E-05 35.6 1.1 21 3-26 11-31 (186)
483 2efe_B Small GTP-binding prote 67.3 1.9 6.4E-05 35.0 1.4 20 4-26 14-33 (181)
484 2qnr_A Septin-2, protein NEDD5 67.2 1.4 4.8E-05 40.7 0.6 19 4-22 20-39 (301)
485 1ksh_A ARF-like protein 2; sma 67.0 2.2 7.7E-05 35.0 1.8 22 3-27 19-40 (186)
486 3t5g_A GTP-binding protein RHE 67.0 2 6.8E-05 35.1 1.5 21 3-26 7-27 (181)
487 2g6b_A RAS-related protein RAB 66.9 1.9 6.3E-05 35.0 1.3 21 3-26 11-31 (180)
488 3kkq_A RAS-related protein M-R 66.9 1.8 6.3E-05 35.3 1.3 21 3-26 19-39 (183)
489 2oil_A CATX-8, RAS-related pro 66.9 1.8 6.3E-05 35.8 1.3 21 3-26 26-46 (193)
490 2xtp_A GTPase IMAP family memb 66.6 2.2 7.5E-05 37.7 1.7 21 3-26 23-43 (260)
491 1r6b_X CLPA protein; AAA+, N-t 66.4 2.6 9E-05 43.6 2.6 23 4-26 209-232 (758)
492 1mh1_A RAC1; GTP-binding, GTPa 66.1 2 6.7E-05 35.0 1.3 20 4-26 7-26 (186)
493 3bgw_A DNAB-like replicative h 66.1 2.4 8.3E-05 41.5 2.1 35 3-37 198-235 (444)
494 1vg8_A RAS-related protein RAB 65.9 2 6.9E-05 35.9 1.3 21 3-26 9-29 (207)
495 1q57_A DNA primase/helicase; d 65.4 2.2 7.6E-05 42.0 1.7 35 3-37 243-281 (503)
496 2iw3_A Elongation factor 3A; a 65.3 2 7E-05 46.5 1.5 19 4-22 463-482 (986)
497 1ihu_A Arsenical pump-driving 65.1 3.7 0.00013 41.2 3.3 38 2-39 327-367 (589)
498 3pih_A Uvrabc system protein A 64.9 1.6 5.5E-05 46.9 0.6 15 3-17 611-625 (916)
499 1z06_A RAS-related protein RAB 64.7 2.2 7.5E-05 35.3 1.3 21 3-26 21-41 (189)
500 2dby_A GTP-binding protein; GD 64.7 2.2 7.5E-05 40.9 1.5 20 4-23 3-23 (368)
No 1
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=100.00 E-value=2.9e-40 Score=312.45 Aligned_cols=225 Identities=22% Similarity=0.276 Sum_probs=183.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceecCCchhhh-------h---hccCCCCccccchhHHHHHH
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHSLDRTGRK-------E---KGVTALDPRANNFDLMYEQV 68 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr~dr~~~~-------~---~~~~~~~Pea~d~d~L~~~L 68 (329)
+.+|||+|++|||||| |+.|++.|+. ..+.+|++|+||++++..+. + ..+.+|+|+++|++.+.+.|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 3589999999999999 8888887763 35899999999986443321 1 35678899999999999999
Q ss_pred HHHhcCCceecccccc----------ccCCCCCCccc-CCCcEEEEEccccc---cchhhhccCCEEEEEECCHHHHHHH
Q 048274 69 KAMKDGVSVEKPIYNH----------VTGLLDPPELI-KPPKILVIEGLHPM---YDARVRELLDFSIYLDISNEVKFAW 134 (329)
Q Consensus 69 ~~L~~G~~i~~P~Yd~----------~tg~~~~~~~i-~p~~vlIvEGl~~l---~~~~lr~~~D~~IyVD~~~evrl~r 134 (329)
..+++++.++.|.|+| ..+.+.+|..+ .+.+++|+||++++ +...+++.+|++|||+++.+++++|
T Consensus 85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~R 164 (290)
T 1a7j_A 85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQ 164 (290)
T ss_dssp HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHHH
T ss_pred HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHHH
Confidence 9999999999999965 23445566666 46889999999998 4457889999999999999999999
Q ss_pred hhcccccccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecCCC---------CCCCCCCCCc-eEEEEEEEecCCC
Q 048274 135 KIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPT---------QLIPDDNEGK-VLRVRLIMKEGVK 204 (329)
Q Consensus 135 kI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~---------~~~p~~~~~~-~l~~r~~~~~~~~ 204 (329)
+++||..+||+|.|++.+++.+|+|+|++||.|++++||++|+.+|+ ++||+++|++ +||+| +++
T Consensus 165 rl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~~~~~~~ip~~~~~~~~~~~~-----~~~ 239 (290)
T 1a7j_A 165 KIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFR-----NPR 239 (290)
T ss_dssp HHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSCGGGCCSCCCGGGEEEEEEES-----SCS
T ss_pred HhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCCCccccccCCCCccceEEEEEc-----CCC
Confidence 99999999999999999999988999999999999999997776654 7899999998 77777 888
Q ss_pred CCCcccccc--CCCcccccccCCcccccCCCeeE
Q 048274 205 YFSPVYLFD--EGSTIEWIPCGRKLTCSYPGIKF 236 (329)
Q Consensus 205 ~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
++||+||++ +||+++ |..|+..||-||
T Consensus 240 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 268 (290)
T 1a7j_A 240 GIDFPYLTSMIHGSWMS-----RANSIVVPGNKL 268 (290)
T ss_dssp SCCHHHHHHHSTTCEEE-----ETTEEEEEGGGH
T ss_pred CCCHHHHHHhccccccc-----CCceEEeeCccH
Confidence 999999999 888766 444444444333
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.95 E-value=4.7e-28 Score=232.49 Aligned_cols=180 Identities=21% Similarity=0.305 Sum_probs=147.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccceecCCchhhhhhcc--CCCCccccchhHHHHHHHHHhcC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDDYHSLDRTGRKEKGV--TALDPRANNFDLMYEQVKAMKDG 74 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Ddyhr~dr~~~~~~~~--~~~~Pea~d~d~L~~~L~~L~~G 74 (329)
..+|||+|++|||||| ++.++..+.. ..+.+|++|+||.+ +....+.+. ....|+++|.+++.+.|..+++|
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~-~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g 170 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS-NAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSG 170 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC-HHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc-hhhhhhHHHHhhccCcccccHHHHHHHHHhhhcc
Confidence 3589999999999999 7888887752 36999999999985 222322222 23469999999999999999999
Q ss_pred C-ceeccccccccCCCC--CCcccCCCcEEEEEccccccchh----------hhccCCEEEEEECCHHHHHHHhhccccc
Q 048274 75 V-SVEKPIYNHVTGLLD--PPELIKPPKILVIEGLHPMYDAR----------VRELLDFSIYLDISNEVKFAWKIQRDMT 141 (329)
Q Consensus 75 ~-~i~~P~Yd~~tg~~~--~~~~i~p~~vlIvEGl~~l~~~~----------lr~~~D~~IyVD~~~evrl~rkI~RD~~ 141 (329)
+ .+..|.||+.+++.. .+..+.+.+|||+||+++++++. +++++|++||||++++++++|+++||..
T Consensus 171 ~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~ 250 (321)
T 3tqc_A 171 QRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLS 250 (321)
T ss_dssp CSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcch
Confidence 8 899999999998753 34566788999999999999763 8999999999999999999999999988
Q ss_pred ccC---------------CchhhHHHH----Hh-hcccchhhhccccCCCCcEEEecCCCC
Q 048274 142 ERG---------------HSLESIKAS----IE-ARKPDFDAYIDPQKQYADAVIEVLPTQ 182 (329)
Q Consensus 142 eRG---------------~s~E~V~~~----i~-~r~pd~~~yI~Pqk~~ADiVI~~~p~~ 182 (329)
.|| .|.+++.+. |. ..+|++++||.|++++||+||+....+
T Consensus 251 ~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 251 FWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred hhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCC
Confidence 775 456665554 33 357999999999999999999875544
No 3
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.91 E-value=4.6e-24 Score=202.45 Aligned_cols=177 Identities=22% Similarity=0.325 Sum_probs=142.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--c--CCeEEEEccceecCCchhhhhhcc-C-CCCccccchhHHHHHHHHHhcCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--S--DTTTVICLDDYHSLDRTGRKEKGV-T-ALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~--~~v~vI~~Ddyhr~dr~~~~~~~~-~-~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
.+|||+|++|||||| ++.++..+. . ..+.+|++|+|+.. +..+...++ . +..|.+++...+...+..+..|+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~-~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~ 159 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP-NQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGV 159 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC-HHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc-HHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCC
Confidence 589999999999998 788888775 2 25899999999974 222332222 2 23467888888888999999988
Q ss_pred c-eeccccccccCCCCC--CcccCCCcEEEEEccccccc----------hhhhccCCEEEEEECCHHHHHHHhhcccccc
Q 048274 76 S-VEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYD----------ARVRELLDFSIYLDISNEVKFAWKIQRDMTE 142 (329)
Q Consensus 76 ~-i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~----------~~lr~~~D~~IyVD~~~evrl~rkI~RD~~e 142 (329)
. +.+|.||+..+...+ +..+.+.++||+||++++.. ..+++++|++|||+++++++++|+++||...
T Consensus 160 ~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~ 239 (308)
T 1sq5_A 160 PNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKF 239 (308)
T ss_dssp SCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred CceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 7 999999999886432 44456679999999999986 2789999999999999999999999998532
Q ss_pred ---------------cCCchhhHHHHHhhcc-----cchhhhccccCCCCcEEEecCC
Q 048274 143 ---------------RGHSLESIKASIEARK-----PDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 143 ---------------RG~s~E~V~~~i~~r~-----pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
+|+|.|++.+++.++| |++++||.|.+++||+||++..
T Consensus 240 r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 240 REGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp HHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECG
T ss_pred HHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCC
Confidence 4999999888876654 5699999999999999999753
No 4
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.91 E-value=4e-24 Score=196.34 Aligned_cols=176 Identities=24% Similarity=0.458 Sum_probs=145.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc-------CCeEEEEccceecC-Cchh--hhhh-ccCCCCccccchhHHHHHHH
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS-------DTTTVICLDDYHSL-DRTG--RKEK-GVTALDPRANNFDLMYEQVK 69 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~-------~~v~vI~~Ddyhr~-dr~~--~~~~-~~~~~~Pea~d~d~L~~~L~ 69 (329)
..+|+|+|++|||||| |+.|++.|+. ..+.+|++|+||+. .... +... .+.+.+|+++|++.+.+.|.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L~ 101 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLK 101 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHHH
Confidence 3589999999999998 8888887763 25779999999984 2211 1222 35566899999999999999
Q ss_pred HHhcCCceeccccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 70 AMKDGVSVEKPIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 70 ~L~~G~~i~~P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
.+..|..+..|.||+.++... .+....+.++||+||.+.++.+.+++.+|++|||+++++++++|++.||...||.+.+
T Consensus 102 ~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e 181 (252)
T 1uj2_A 102 EITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLE 181 (252)
T ss_dssp HHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCCCHH
Confidence 999999999999999887532 2334456789999999988777888999999999999999999999998778899999
Q ss_pred hHHHHHhh-cccchhhhccccCCCCcEEEe
Q 048274 149 SIKASIEA-RKPDFDAYIDPQKQYADAVIE 177 (329)
Q Consensus 149 ~V~~~i~~-r~pd~~~yI~Pqk~~ADiVI~ 177 (329)
++.++|.. ..++|.+++.|.++.||++|+
T Consensus 182 ~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 182 QILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp HHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred HHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 99999875 457899999999999999993
No 5
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.90 E-value=2.5e-24 Score=203.59 Aligned_cols=185 Identities=14% Similarity=0.240 Sum_probs=139.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC----CeEEE-EccceecCCchhhhhhc--------cCCC-CccccchhHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD----TTTVI-CLDDYHSLDRTGRKEKG--------VTAL-DPRANNFDLMYEQ 67 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~----~v~vI-~~Ddyhr~dr~~~~~~~--------~~~~-~Pea~d~d~L~~~ 67 (329)
.+|||+|++|||||| ++.++..|... .+.++ ++|+||.+ +..+.... +.++ .|+++|++.+.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~ 110 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEV 110 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC-hHHHHHHhccccccchhhhccCcchhHHHHHHHH
Confidence 589999999999999 88888888642 35555 99999985 33332211 2333 4999999999999
Q ss_pred HHHHhcC------Cceecccccccc----CCCC---CCcccCCCcEEEEEccccccchh---------------------
Q 048274 68 VKAMKDG------VSVEKPIYNHVT----GLLD---PPELIKPPKILVIEGLHPMYDAR--------------------- 113 (329)
Q Consensus 68 L~~L~~G------~~i~~P~Yd~~t----g~~~---~~~~i~p~~vlIvEGl~~l~~~~--------------------- 113 (329)
|..++.| +.+..|.||+.. +++. +|..+ +.+|||+||++.++++.
T Consensus 111 l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n~~l 189 (290)
T 1odf_A 111 LNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKL 189 (290)
T ss_dssp HHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHHHHH
T ss_pred HHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHHHHH
Confidence 9999998 778899999988 6543 36777 89999999998876654
Q ss_pred ------hhccCCEE---EEEEC-CHHHHHHHhhcc--c-cccc--CCchhhHHHHHhhcccchhhhccccC------CCC
Q 048274 114 ------VRELLDFS---IYLDI-SNEVKFAWKIQR--D-MTER--GHSLESIKASIEARKPDFDAYIDPQK------QYA 172 (329)
Q Consensus 114 ------lr~~~D~~---IyVD~-~~evrl~rkI~R--D-~~eR--G~s~E~V~~~i~~r~pd~~~yI~Pqk------~~A 172 (329)
+++++|+. ||||+ +.+....||++| | .++| |+|.|++.+.+.++||+|+.|+.|.. ..|
T Consensus 190 ~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~~~~a 269 (290)
T 1odf_A 190 FFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESLGSIA 269 (290)
T ss_dssp HHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCSSSSE
T ss_pred HHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHHHhccCCCCC
Confidence 34445555 99999 455566679999 6 3456 99999998888899999998876642 378
Q ss_pred cEEEecCCCCCCCCCCCCceEEEEE
Q 048274 173 DAVIEVLPTQLIPDDNEGKVLRVRL 197 (329)
Q Consensus 173 DiVI~~~p~~~~p~~~~~~~l~~r~ 197 (329)
|+|+..- ....+.+|++
T Consensus 270 dlvl~~~--------~~~~~~~~~~ 286 (290)
T 1odf_A 270 TLTLGID--------SNRNVYSTKT 286 (290)
T ss_dssp EEEEEEC--------TTSCEEEEEE
T ss_pred CEEEEEC--------CCCCEEEEEE
Confidence 9998742 2334666665
No 6
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.88 E-value=1.7e-22 Score=180.22 Aligned_cols=173 Identities=19% Similarity=0.260 Sum_probs=141.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceecCCchhhhhhc-c-CCCCccccchhHHHHHHHHHhcCCce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHSLDRTGRKEKG-V-TALDPRANNFDLMYEQVKAMKDGVSV 77 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr~dr~~~~~~~-~-~~~~Pea~d~d~L~~~L~~L~~G~~i 77 (329)
.+|+|.|++|||||| ++.++..+.. ..+.+|++|+|+.. +......+ + ....|.+++...+.+.+..+..|+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~i 101 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD-NRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERV 101 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC-HHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHCSCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC-HHHHHHhcccccCCCCchhhHHHHHHHHHHHhcCCce
Confidence 589999999999998 7888888864 35899999999874 22222211 1 12357889999999999999999999
Q ss_pred eccccccccCCCC-CCcccCCC-cEEEEEccccccch----hhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHH
Q 048274 78 EKPIYNHVTGLLD-PPELIKPP-KILVIEGLHPMYDA----RVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIK 151 (329)
Q Consensus 78 ~~P~Yd~~tg~~~-~~~~i~p~-~vlIvEGl~~l~~~----~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~ 151 (329)
..|.||+.++... +++.+.+. +++|+||.+.++++ .+++.+|.+||||++.+++++|.++|+. +||+|.+++.
T Consensus 102 ~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~-~~g~t~~~~~ 180 (208)
T 3c8u_A 102 IYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWL-DHGLNHDAAV 180 (208)
T ss_dssp EEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHH-HTTCCHHHHH
T ss_pred ecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHH-hcCCCHHHHH
Confidence 9999999877543 34556654 89999999987743 5688999999999999999999999975 6899999999
Q ss_pred HHHh-hcccchhhhccccCCCCcEEEec
Q 048274 152 ASIE-ARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 152 ~~i~-~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+++. .++|++ +||.|++.+||+||+.
T Consensus 181 ~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 181 ARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 9998 589977 7999999999999974
No 7
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.88 E-value=3.1e-23 Score=201.21 Aligned_cols=147 Identities=17% Similarity=0.238 Sum_probs=122.0
Q ss_pred CeEEEEccceecCCchhhhh------hccCCCCccccchhHHHHHHHHHhcC----------------------------
Q 048274 29 TTTVICLDDYHSLDRTGRKE------KGVTALDPRANNFDLMYEQVKAMKDG---------------------------- 74 (329)
Q Consensus 29 ~v~vI~~Ddyhr~dr~~~~~------~~~~~~~Pea~d~d~L~~~L~~L~~G---------------------------- 74 (329)
.+.+|+||+||++ +..+.. ......+|+++|.++|.++++.|++|
T Consensus 155 ~v~vi~mDgFh~~-~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 233 (359)
T 2ga8_A 155 IAQIVPMDGFHLS-RRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQT 233 (359)
T ss_dssp SEEEEEGGGGBCC-HHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETT
T ss_pred eEEEEecCcCCCC-HHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccccc
Confidence 3789999999986 333221 23345579999999999999999887
Q ss_pred -CceeccccccccCCCCC-CcccCC-CcEEEEEccccccch----hhhccCC-----EEEEEECCHHHHHHHhhcccccc
Q 048274 75 -VSVEKPIYNHVTGLLDP-PELIKP-PKILVIEGLHPMYDA----RVRELLD-----FSIYLDISNEVKFAWKIQRDMTE 142 (329)
Q Consensus 75 -~~i~~P~Yd~~tg~~~~-~~~i~p-~~vlIvEGl~~l~~~----~lr~~~D-----~~IyVD~~~evrl~rkI~RD~~e 142 (329)
+.+..|.|||.+++..+ ...+.| .++||+||+++|++. .+++++| ++||||++++++++|.++||+.
T Consensus 234 ~~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~- 312 (359)
T 2ga8_A 234 IPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ- 312 (359)
T ss_dssp CCCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-
T ss_pred CceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-
Confidence 57899999999987543 345555 699999999999863 5778999 9999999999999999999984
Q ss_pred cCC--chhhHHHHHh-hcccchhhhccccCCCCcEEEec
Q 048274 143 RGH--SLESIKASIE-ARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 143 RG~--s~E~V~~~i~-~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+|+ |.|++.+++. ..+|+. +||.|++.+||+|+..
T Consensus 313 ~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 313 SGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHI 350 (359)
T ss_dssp TTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEE
T ss_pred cCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEe
Confidence 899 9999999997 578977 7999999999999864
No 8
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.86 E-value=3.2e-21 Score=170.94 Aligned_cols=177 Identities=24% Similarity=0.428 Sum_probs=144.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC-chhh-hhhccCCCCccccchhHHHHHHHHHhcCCceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD-RTGR-KEKGVTALDPRANNFDLMYEQVKAMKDGVSVEK 79 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d-r~~~-~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~ 79 (329)
.+|||+|++|||||| ++.++..+.. .+.+++.|+|++.. .... ....+.+..|.+.+.+.+.+.+..+..++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 489999999999997 6666666543 48999999998742 1111 112333446788888899999999998999999
Q ss_pred cccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-hc
Q 048274 80 PIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-AR 157 (329)
Q Consensus 80 P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~r 157 (329)
|.|+...|... +...+...+++++||.+.+.++.+..++|.+||||++.+.++.|+++|+..++|.+.+.+...+. ..
T Consensus 86 ~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~ 165 (211)
T 3asz_A 86 PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQV 165 (211)
T ss_dssp CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTH
T ss_pred CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 99998887643 33455667899999999998888999999999999999999999999998889999998888776 45
Q ss_pred ccchhhhccccCCCCcEEEecCC
Q 048274 158 KPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 158 ~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
.|+|.+|+.|.+++||+||++.-
T Consensus 166 ~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 166 KPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHHHTTGGGGGGCSEEEESTT
T ss_pred hhhHHHhcccchhcCeEEEeCCC
Confidence 79999999999999999998743
No 9
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=1.8e-21 Score=185.77 Aligned_cols=177 Identities=20% Similarity=0.298 Sum_probs=139.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccceecCCchhhhhhcc-C-CCCccccchhHHHHHHHHHhcCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDDYHSLDRTGRKEKGV-T-ALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Ddyhr~dr~~~~~~~~-~-~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
.+|||.|++|||||| ++.++..+.. ..+.+|.+|+||.+. ..+....+ . +..|++.|.+.+.+.|..++.|.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGS 169 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCc
Confidence 589999999999999 7888887753 359999999998753 33322222 1 23588999999999999999776
Q ss_pred c-eeccccccccCCCCC--CcccCCCcEEEEEccccccc---hhhhccCCEEEEEECCHHHHHHHhhccccc-----c--
Q 048274 76 S-VEKPIYNHVTGLLDP--PELIKPPKILVIEGLHPMYD---ARVRELLDFSIYLDISNEVKFAWKIQRDMT-----E-- 142 (329)
Q Consensus 76 ~-i~~P~Yd~~tg~~~~--~~~i~p~~vlIvEGl~~l~~---~~lr~~~D~~IyVD~~~evrl~rkI~RD~~-----e-- 142 (329)
. ...|.|++..+.... +..+.+.+|||+||++.+.+ ..+++++|++|||+++.+++++|+++|++. .
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccC
Confidence 5 677888887665432 33456789999999999964 679999999999999999999999998653 2
Q ss_pred --------cCCchhhHHHHHh-----hcccchhhhccccCCCCcEEEecCC
Q 048274 143 --------RGHSLESIKASIE-----ARKPDFDAYIDPQKQYADAVIEVLP 180 (329)
Q Consensus 143 --------RG~s~E~V~~~i~-----~r~pd~~~yI~Pqk~~ADiVI~~~p 180 (329)
+|+|.+++.+++. ..+|++++||.|.+.+||+||++..
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred cchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 2889999886654 3578899999999999999998743
No 10
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.82 E-value=1.6e-21 Score=173.15 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=115.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceecCCchhhhhhccC---CCCccccchhHHHHH-HHHHhcCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHSLDRTGRKEKGVT---ALDPRANNFDLMYEQ-VKAMKDGV 75 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr~dr~~~~~~~~~---~~~Pea~d~d~L~~~-L~~L~~G~ 75 (329)
.+|+|+|++|||||| ++.++..+... .+.++++|.|++. +..+...+.. .+.+.++|.+.|.+. +..++.|+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~~ 101 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE-RAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASH 101 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC-HHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC-HHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcCC
Confidence 589999999999998 77788777533 5778899999874 2111111110 012578899999876 47888898
Q ss_pred ceeccccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHH
Q 048274 76 SVEKPIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASI 154 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i 154 (329)
.+..|.|+|..+... ......+.+++|+||.+.+. +.+.+.+|++|||+++++++++|.++|| +++.++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~-~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~~~~~~ 172 (201)
T 1rz3_A 102 QLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQR-KEWRPFFDFVVYLDCPREIRFARENDQV--------KQNIQKF 172 (201)
T ss_dssp EEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTS-TTTGGGCSEEEEECCC----------------------CHHHH
T ss_pred ccccCceeccCCCCCCceEEeCCCcEEEEechhhcc-HHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HHHHHHH
Confidence 999999999854322 22334567899999999875 6688999999999999999999999887 6778888
Q ss_pred -hhcccchhhhcccc--CCCCcEEEec
Q 048274 155 -EARKPDFDAYIDPQ--KQYADAVIEV 178 (329)
Q Consensus 155 -~~r~pd~~~yI~Pq--k~~ADiVI~~ 178 (329)
.+++|.+..|+.|. +++||+||+|
T Consensus 173 ~~~~~~~~~~y~~~~~~~~~AD~vI~N 199 (201)
T 1rz3_A 173 INRYWKAEDYYLETEEPIKRADVVFDM 199 (201)
T ss_dssp HHHHHHHHHHHHHHHCHHHHCSEEEC-
T ss_pred HhheeHHHHHHhCCCCcHhhCcEEecC
Confidence 57899999998776 6899999987
No 11
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=9.1e-20 Score=166.56 Aligned_cols=175 Identities=25% Similarity=0.439 Sum_probs=135.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc-------CCeEEEEccceecC-Cchhh--hhh-ccCCCCccccchhHHHHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS-------DTTTVICLDDYHSL-DRTGR--KEK-GVTALDPRANNFDLMYEQVKA 70 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~-------~~v~vI~~Ddyhr~-dr~~~--~~~-~~~~~~Pea~d~d~L~~~L~~ 70 (329)
.+|||+|++|||||| ++.++..++. ..+.++.+|+||+. ...+. ... ...+.+|++++.+.+.+.|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 105 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKN 105 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHH
Confidence 589999999999998 7778777653 25778999998864 21111 111 223446788888888888888
Q ss_pred HhcCCceeccccccccCCCC-CCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhh
Q 048274 71 MKDGVSVEKPIYNHVTGLLD-PPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLES 149 (329)
Q Consensus 71 L~~G~~i~~P~Yd~~tg~~~-~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~ 149 (329)
+..+.....+.|+...+... .+..+.+.++||+||+..+.++.+.+++|.+|||+++.+++++|++.||+ ++|.+.|+
T Consensus 106 l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G~~~e~ 184 (245)
T 2jeo_A 106 IVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRGRDLEQ 184 (245)
T ss_dssp HHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C---CHHH
T ss_pred HHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcCCCHHH
Confidence 87777677777776554322 23334567899999999887788999999999999999999999999998 78999999
Q ss_pred HHHHHh-hcccchhhhccccCCCCcEEEec
Q 048274 150 IKASIE-ARKPDFDAYIDPQKQYADAVIEV 178 (329)
Q Consensus 150 V~~~i~-~r~pd~~~yI~Pqk~~ADiVI~~ 178 (329)
+.++|. +..|++++||.|.++.||+||++
T Consensus 185 ~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 185 ILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp HHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred HHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 999987 46799999999999999999965
No 12
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.65 E-value=1.3e-17 Score=151.09 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC--Cc-hhhhh-----hccCCCCc-cccchhHHHHHHH----H
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL--DR-TGRKE-----KGVTALDP-RANNFDLMYEQVK----A 70 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~--dr-~~~~~-----~~~~~~~P-ea~d~d~L~~~L~----~ 70 (329)
-|||+|++||||| ++++.|.+.++.+|++|...+. .. ....+ -|-..+.+ ..+|...|.+.+. .
T Consensus 11 ~iglTGgigsGKS---tv~~~l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 11 AIGLTGGIGSGKT---TVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp EEEEECCTTSCHH---HHHHHHHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred EEEEECCCCCCHH---HHHHHHHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 5999999999999 5666776678999999998652 11 11111 23344443 3567777776543 2
Q ss_pred HhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 71 MKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 71 L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
++.-+.|.+|.--.. +..+..-.+.+++|+|..+++....+.+++|..|||++|++++++|.++|| |.|.+++
T Consensus 88 ~~~L~~i~HP~I~~~---~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s~eea 160 (210)
T 4i1u_A 88 RRRLEAITHPLIRAE---TEREARDAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFTREQV 160 (210)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCCHHHH
T ss_pred HHHHHHHhhHHHHHH---HHHHHHhcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCCHHHH
Confidence 222344556632111 111111123568999987655437788999999999999999999999997 8999999
Q ss_pred HHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 151 KASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 151 ~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.+++.+++|..++ ++.||+||+|.
T Consensus 161 ~~ri~~Q~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 161 EAIIARQATREAR-----LAAADDVIVND 184 (210)
T ss_dssp HHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred HHHHHHcCChHHH-----HHhCCEEEECC
Confidence 9999999999776 58999999985
No 13
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.58 E-value=5.4e-15 Score=130.68 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=107.9
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccC--CeEEEEccceecCCchh-hhhhcc-CCCCccccchhHHHHHHHHHhcCCce
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISD--TTTVICLDDYHSLDRTG-RKEKGV-TALDPRANNFDLMYEQVKAMKDGVSV 77 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~--~v~vI~~Ddyhr~dr~~-~~~~~~-~~~~Pea~d~d~L~~~L~~L~~G~~i 77 (329)
..+|+|+|++|||||| +++.|... ++.+|++|+|+.....- ....++ .+..++++|...+.+.+..+.++ .
T Consensus 21 ~~~i~i~G~~GsGKST---l~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~--~ 95 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT---LAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES--A 95 (207)
T ss_dssp CEEEEEEESTTSSHHH---HHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH--H
T ss_pred CeEEEEECCCCCCHHH---HHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC--C
Confidence 4689999999999995 55555443 69999999998753211 111122 12345678888887777665542 1
Q ss_pred eccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh-h
Q 048274 78 EKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE-A 156 (329)
Q Consensus 78 ~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~-~ 156 (329)
.+|... ..+ ....+.+++|+||.+.+..+.+.+.+|..+|++++++++++|+..| |++.+++.+++. +
T Consensus 96 ~~~~~~---~~~---~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R-----~~~~e~~~~~~~~~ 164 (207)
T 2qt1_A 96 RHSVVS---TDQ---ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTR-----VYQPPDSPGYFDGH 164 (207)
T ss_dssp TTSSCC---C--------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHS-----CCSSCCCTTHHHHT
T ss_pred CCCCcC---CCe---eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHc-----CCCccchHHHHHHH
Confidence 122111 111 1134578999999887765678889999999999999999987655 566676667776 7
Q ss_pred cccchhhhccccCCCCcEE--Eec
Q 048274 157 RKPDFDAYIDPQKQYADAV--IEV 178 (329)
Q Consensus 157 r~pd~~~yI~Pqk~~ADiV--I~~ 178 (329)
+++.|..+++...+.||.+ |++
T Consensus 165 ~~~~~~~~~~~~~~~~~~v~~Id~ 188 (207)
T 2qt1_A 165 VWPMYLKYRQEMQDITWEVVYLDG 188 (207)
T ss_dssp HHHHHHHHHHHGGGCSSCCEEEET
T ss_pred HhHHHHHHHHHHHhcCCeEEEecC
Confidence 8888877665555667766 665
No 14
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.54 E-value=2.4e-15 Score=140.80 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=106.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC----Cchh----hhhhccCCCCcc-ccchhHHHHHH----
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL----DRTG----RKEKGVTALDPR-ANNFDLMYEQV---- 68 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~----dr~~----~~~~~~~~~~Pe-a~d~d~L~~~L---- 68 (329)
.+|+|+|++|||||| |+.|+ ..++.+|++|++.+. .... ....+...++|+ .+|...+...+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La----~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK----NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH----HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 589999999999996 55555 336899999999541 1111 112234445543 45655553321
Q ss_pred HHHhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 69 KAMKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 69 ~~L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
..+...+.+.+|.+.....+.-......+.+++|+||.+.+. ..+.+.+|++|||+++++++++|.++|| |++.+
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~-~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~s~e 226 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLE-AGWQSMVHEVWTVVIPETEAVRRIVERD----GLSEA 226 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTT-TTGGGGCSEEEEEECCHHHHHHHHHHHH----CCCHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhc-cchHHhCCEEEEEcCCHHHHHHHHHHcC----CCCHH
Confidence 112222345556443222111000011235799999998664 5677889999999999999999999886 78999
Q ss_pred hHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 149 SIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
++.+++..+++....+ ..||++|++.
T Consensus 227 ~~~~ri~~q~~~~~~~-----~~AD~vIdn~ 252 (281)
T 2f6r_A 227 AAQSRLQSQMSGQQLV-----EQSNVVLSTL 252 (281)
T ss_dssp HHHHHHHTSCCHHHHH-----HTCSEEEECS
T ss_pred HHHHHHHHcCChHhhH-----hhCCEEEECC
Confidence 9999998887765542 5799999874
No 15
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.51 E-value=1.1e-15 Score=136.03 Aligned_cols=148 Identities=16% Similarity=0.048 Sum_probs=98.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC-ch---h-hhhhccCCCCccccchhHHHHHH----HHHh
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD-RT---G-RKEKGVTALDPRANNFDLMYEQV----KAMK 72 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d-r~---~-~~~~~~~~~~Pea~d~d~L~~~L----~~L~ 72 (329)
.+|||+|++|||||| ++.|++.+ ++.+|++|++++.- .+ . ....|...+.+..+|.+.|.+.+ ..++
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l---g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY---GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHH
Confidence 589999999999996 44454443 69999999998741 11 1 11123333335677877777643 2233
Q ss_pred cCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHH
Q 048274 73 DGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKA 152 (329)
Q Consensus 73 ~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~ 152 (329)
..+.+.+|.+........ . ...+++|+|+.+.+. ..+.+.+|..|||++|++++++|.
T Consensus 90 ~l~~i~hP~i~~~~~~~~---~-~~~~~vv~d~pll~e-~~~~~~~d~vi~v~a~~e~r~~Rl----------------- 147 (192)
T 2grj_A 90 KLELLVHPLMKKRVQEII---N-KTSGLIVIEAALLKR-MGLDQLCDHVITVVASRETILKRN----------------- 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHH---H-TCCEEEEEECTTTTT-TTGGGGCSEEEEEECCHHHHHHHC-----------------
T ss_pred HHHhhhCHHHHHHHHHHH---H-HcCCEEEEEEeceee-cChHHhCCEEEEEECCHHHHHHHH-----------------
Confidence 345677776654322110 0 014699999887665 468889999999999999999986
Q ss_pred HHhhcccchhhhccccCCCCcEEEecC
Q 048274 153 SIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 153 ~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.+++|.+ +++.+++||+||+|.
T Consensus 148 -i~~q~~~~---~~~~~~~AD~vI~n~ 170 (192)
T 2grj_A 148 -READRRLK---FQEDIVPQGIVVANN 170 (192)
T ss_dssp -SSHHHHHT---TCTTCCCCSEEEECS
T ss_pred -HHhcCCch---hhhHHhcCCEEEECC
Confidence 23455552 344578999999975
No 16
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.45 E-value=4.7e-14 Score=124.35 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=94.5
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCC--c--hh----hhhhccCCCCc-cccchhHHHHHHHH-
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLD--R--TG----RKEKGVTALDP-RANNFDLMYEQVKA- 70 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~d--r--~~----~~~~~~~~~~P-ea~d~d~L~~~L~~- 70 (329)
|..+|+|+|++|||||| +++.|...+..+|++|++++.- . .. ....|...+.+ ...+...+.+.+..
T Consensus 1 m~~~i~l~G~~GsGKST---~~~~La~lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTT---IANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp CCEEEEEECSTTSCHHH---HHHHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHH---HHHHHHHCCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 55789999999999996 4444444578899999998631 1 10 01113333322 12333333222110
Q ss_pred ---HhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCch
Q 048274 71 ---MKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSL 147 (329)
Q Consensus 71 ---L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~ 147 (329)
+..-..+..|.+...... .........+|+||...+. ..+...+|..|||+++++++++|...|| |++.
T Consensus 78 ~~~~~~l~~~~~p~v~~~~~~---~~~~~~~~~vv~~~~~l~e-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~ 149 (206)
T 1jjv_A 78 DEDKLWLNNLLHPAIRERMKQ---KLAEQTAPYTLFVVPLLIE-NKLTALCDRILVVDVSPQTQLARSAQRD----NNNF 149 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHTCCSSEEEEECTTTTT-TTCGGGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred HHHHHHHHhccCHHHHHHHHH---HHHhcCCCEEEEEechhhh-cCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 000012334433221100 0000123588999855443 3467889999999999999999998886 7889
Q ss_pred hhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 148 ESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 148 E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+++.+++.++++.... .+.||++|++.
T Consensus 150 e~~~~r~~~q~~~~~~-----~~~ad~vIdn~ 176 (206)
T 1jjv_A 150 EQIQRIMNSQVSQQER-----LKWADDVINND 176 (206)
T ss_dssp HHHHHHHHHSCCHHHH-----HHHCSEEEECC
T ss_pred HHHHHHHHhcCChHHH-----HHhCCEEEECC
Confidence 9999999888776654 35799999874
No 17
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.39 E-value=5.3e-14 Score=123.23 Aligned_cols=160 Identities=15% Similarity=0.103 Sum_probs=95.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHh-------
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMK------- 72 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~------- 72 (329)
|+.+|+|+|++|||||| ++.|++.| ++.++++|++++.......+.+.++.++ +.+.+.+..+.
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~~l---g~~~~d~d~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~ 72 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAAAL---GVPYLSSGLLYRAAAFLALRAGVDPGDE-----EGLLALLEGLGVRLLAQA 72 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHH---TCCEEEHHHHHHHHHHHHHHHTCCTTCH-----HHHHHHHHHTTCEEECCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc---CCceeccchHHHhhhhhhHhcCCCCCCH-----HHHHHHHHhCceeeeecC
Confidence 77799999999999997 66666666 4889999999863111111223333332 22222222221
Q ss_pred -------cCCceecccccc---------ccCC-----CCCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHH
Q 048274 73 -------DGVSVEKPIYNH---------VTGL-----LDPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEV 130 (329)
Q Consensus 73 -------~G~~i~~P~Yd~---------~tg~-----~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~ev 130 (329)
.|+.+..+.... ..+. +..+ ..+. ..+|+||...+ ..+.+.+|++|||++++++
T Consensus 73 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~~~~~~~d~~i~l~a~~e~ 148 (208)
T 3ake_A 73 EGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--TAVFPEAAHKFYLTASPEV 148 (208)
T ss_dssp TCCEEEETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--CCCCTTCSEEEEEECCHHH
T ss_pred CCceEEECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--EEEecCCcEEEEEECCHHH
Confidence 111111000000 0000 0000 0122 57899998765 2356678999999999999
Q ss_pred HHHHhhcccccccCCchhhHHHHHhhcccchhhhccccCCCCc-EEEecC
Q 048274 131 KFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYAD-AVIEVL 179 (329)
Q Consensus 131 rl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~AD-iVI~~~ 179 (329)
+++|...|+ +.+.+++.+.+..|.+.+..+. ...|| ++|++.
T Consensus 149 ~~~R~~~r~----~~~~~~~~~~~~~R~~~~~~~~---~~~ad~~~Id~~ 191 (208)
T 3ake_A 149 RAWRRARER----PQAYEEVLRDLLRRDERDKAQS---APAPDALVLDTG 191 (208)
T ss_dssp HHHHHHHTS----SSCHHHHHHHHHHHHHTC--CC---CCCTTCEEEETT
T ss_pred HHHHHHhhc----ccCHHHHHHHHHHHHHHHhhcc---cCCCCEEEEECC
Confidence 999988885 3577888888886655554332 45688 999874
No 18
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.38 E-value=2.3e-14 Score=138.33 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=94.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce--ecC-CchhhhhhccCCCCccccchhHHHHHHHHHhcCCc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY--HSL-DRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVS 76 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy--hr~-dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~ 76 (329)
|.++|+|+|++|||||| |..|+..|+ +.+|++|+| |+. +-...+ |..-..+.+..+|..+..+..
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~qvYr~~~i~Tak--------p~~eE~~~v~hhl~di~~~~~ 74 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSMQVYQGMDIGTAK--------VTTEEMEGIPHYMIDILPPDA 74 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSSTTBTTCCTTTTC--------CCTTTTTTCCEESSSCBCTTS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcC---CceeccccccccccccccccC--------CCHHHHHHHHHHHHHHhCCcc
Confidence 56799999999999998 777777774 789999999 543 110000 000011111112222233333
Q ss_pred eeccccccccCCCCCCccc--CCCcEEEEEccccccchhhhccCCEEEEEE-CCHH--HHHHHhhcccccccCCchhhHH
Q 048274 77 VEKPIYNHVTGLLDPPELI--KPPKILVIEGLHPMYDARVRELLDFSIYLD-ISNE--VKFAWKIQRDMTERGHSLESIK 151 (329)
Q Consensus 77 i~~P~Yd~~tg~~~~~~~i--~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD-~~~e--vrl~rkI~RD~~eRG~s~E~V~ 151 (329)
..|.|++..........+ .+..+||++|.+ +|.+.+.+.+| +|++ ++++ +++.+++.| ..++|. +.+.
T Consensus 75 -~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~-ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~--~~l~ 147 (340)
T 3d3q_A 75 -SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTG-LYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN--NKLH 147 (340)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH--HHHH
T ss_pred -ccCHHHHHHHHHHHHHHHHhCCCcEEEECChh-hhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH--HHHH
Confidence 445555544332211111 356788888888 56577888777 8888 8888 788889999 888886 4566
Q ss_pred HHHhhcccchhhhcccc
Q 048274 152 ASIEARKPDFDAYIDPQ 168 (329)
Q Consensus 152 ~~i~~r~pd~~~yI~Pq 168 (329)
+.+..+.|.+.++|.|+
T Consensus 148 ~~L~~vdP~~a~~I~p~ 164 (340)
T 3d3q_A 148 EYLASFDKESAKDIHPN 164 (340)
T ss_dssp HHHHHHCHHHHHHSCTT
T ss_pred HHHHhhCcHHHhhcCcc
Confidence 66778899999998875
No 19
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.32 E-value=1.3e-12 Score=116.12 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=98.6
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC----chh----hhhhccCCCCc-cccchhHHHHHHHH-
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD----RTG----RKEKGVTALDP-RANNFDLMYEQVKA- 70 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d----r~~----~~~~~~~~~~P-ea~d~d~L~~~L~~- 70 (329)
+.+|+|+|++|||||| ++.|++ .+..+|++|++++.- ... ....+...+.+ ...+...+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~ 79 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFAN 79 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCC
Confidence 4589999999999996 555544 468999999997631 111 11123333332 23454444433211
Q ss_pred ---HhcCCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCch
Q 048274 71 ---MKDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSL 147 (329)
Q Consensus 71 ---L~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~ 147 (329)
+...+.+..|.+........ ... ...++|+|+...+.. .+...+|+.|||+++++++++|...|+ |.+.
T Consensus 80 ~~~~~~l~~~~~p~v~~~~~~~~--~~~-~~~~vi~~~~~l~~~-~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~ 151 (218)
T 1vht_A 80 PEEKNWLNALLHPLIQQETQHQI--QQA-TSPYVLWVVPLLVEN-SLYKKANRVLVVDVSPETQLKRTMQRD----DVTR 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHC-CSSEEEEECTTTTTT-TGGGGCSEEEEEECCHHHHHHHHHHHH----TCCH
T ss_pred HHHHHHHHHhHCHHHHHHHHHHH--Hhc-CCCEEEEEeeeeecc-CccccCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 11111223343321110000 000 235788898654432 367789999999999999999987775 6788
Q ss_pred hhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 148 ESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 148 E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+++.+++..+++.+.. ...||++|++.
T Consensus 152 ~~~~~~~~~~~~~~~~-----~~~ad~vId~~ 178 (218)
T 1vht_A 152 EHVEQILAAQATREAR-----LAVADDVIDNN 178 (218)
T ss_dssp HHHHHHHHHSCCHHHH-----HHHCSEEEECS
T ss_pred HHHHHHHHhcCChHHH-----HHhCCEEEECC
Confidence 8888888888877653 35689999874
No 20
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.31 E-value=4.1e-13 Score=117.10 Aligned_cols=162 Identities=16% Similarity=0.072 Sum_probs=96.4
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCCchhhhhhccCCC----CccccchhHHHHHHHH----Hhc
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTAL----DPRANNFDLMYEQVKA----MKD 73 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~----~Pea~d~d~L~~~L~~----L~~ 73 (329)
..+|+|+|++|||||| +++.|...++.+|++|++++.............| ....++...|.+.+.. +..
T Consensus 8 ~~~I~i~G~~GsGKST---~~~~La~~g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~ 84 (203)
T 1uf9_A 8 PIIIGITGNIGSGKST---VAALLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA 84 (203)
T ss_dssp CEEEEEEECTTSCHHH---HHHHHHHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHH---HHHHHHHCCCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence 3589999999999996 4444433378899999998631111101111112 1113344444332210 000
Q ss_pred CCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHH
Q 048274 74 GVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS 153 (329)
Q Consensus 74 G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~ 153 (329)
.+.+.+|.+. ...+.. ....+..+||+||...+. ..+.+.+|++|||+++++++++|...|+ |.+.+++..+
T Consensus 85 l~~~~~~~i~--~~~i~~-~~~~g~~~vi~d~~~l~~-~~~~~~~d~~i~l~~~~e~~~~R~~~R~----~~~~~~~~~~ 156 (203)
T 1uf9_A 85 LEAVVHPEVR--RLLMEE-LSRLEAPLVFLEIPLLFE-KGWEGRLHGTLLVAAPLEERVRRVMARS----GLSREEVLAR 156 (203)
T ss_dssp HHHHHHHHHH--HHHHHH-HHTCCCSEEEEECTTTTT-TTCGGGSSEEEEECCCHHHHHHHHHTTT----CCTTHHHHHH
T ss_pred HHHHhChHHH--HHHHHH-hhhcCCCEEEEEecceec-cCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHH
Confidence 1122233332 000000 001235799999976544 4466778999999999999999988875 6778888888
Q ss_pred HhhcccchhhhccccCCCCcEEEecC
Q 048274 154 IEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 154 i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.++++.+.. ...||++|++.
T Consensus 157 i~~~~~~~~~-----~~~ad~vId~~ 177 (203)
T 1uf9_A 157 ERAQMPEEEK-----RKRATWVLENT 177 (203)
T ss_dssp HTTSCCHHHH-----HHHCSEEECCS
T ss_pred HHHCCChhHH-----HHhCCEEEECC
Confidence 8888776542 36789999875
No 21
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.30 E-value=5.8e-13 Score=116.93 Aligned_cols=159 Identities=15% Similarity=0.093 Sum_probs=95.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC--Cc-hhh-h----hhccCCCC-ccccchhHHHHHHH---
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL--DR-TGR-K----EKGVTALD-PRANNFDLMYEQVK--- 69 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~--dr-~~~-~----~~~~~~~~-Pea~d~d~L~~~L~--- 69 (329)
.+|+|+|++|||||| ++.|++ + ++.++++|++++. +. ... . ..+...+. +...+...|.+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~ 77 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDE 77 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCH
Confidence 369999999999997 555655 4 6999999999863 11 111 0 11222222 22444444433210
Q ss_pred -HHhcCCceeccccccccCCCCCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCch
Q 048274 70 -AMKDGVSVEKPIYNHVTGLLDPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHSL 147 (329)
Q Consensus 70 -~L~~G~~i~~P~Yd~~tg~~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~ 147 (329)
.++.-..+..|.+... +... .......++|+||...+. ..+...+|.+|||+++++++.+|...| |++.
T Consensus 78 ~~~~~l~~l~~~~v~~~---~~~~~~~~~~~~~vive~~~l~~-~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~ 148 (204)
T 2if2_A 78 EKLRKLEEITHRALYKE---IEKITKNLSEDTLFILEASLLVE-KGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSE 148 (204)
T ss_dssp HHHHHHHHHHHHHHTTT---HHHHHHHSCTTCCEEEECSCSTT-TTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCH
T ss_pred HHHHHHHHhhCHHHHHH---HHHHHHhccCCCEEEEEcccccc-CCchhhCCEEEEEECCHHHHHHHHHHc-----CCCH
Confidence 0000011122322110 0000 011112689999976544 456778999999999999999987765 7888
Q ss_pred hhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 148 ESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 148 E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+++.+++..+++.+.. ...||++|++.
T Consensus 149 ~~~~~~~~~~~~~~~~-----~~~ad~vId~~ 175 (204)
T 2if2_A 149 EDFERRWKKQMPIEEK-----VKYADYVIDNS 175 (204)
T ss_dssp HHHHHHHTTSCCHHHH-----GGGCSEECCCS
T ss_pred HHHHHHHHhCCChhHH-----HhcCCEEEECC
Confidence 8888999888875432 46789999874
No 22
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.19 E-value=3.5e-11 Score=106.89 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=48.9
Q ss_pred CcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCC--chhhHHHHHhhc-ccchhhhccccCCC-Cc
Q 048274 98 PKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGH--SLESIKASIEAR-KPDFDAYIDPQKQY-AD 173 (329)
Q Consensus 98 ~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~--s~E~V~~~i~~r-~pd~~~yI~Pqk~~-AD 173 (329)
.+.+++||.. +.. .+...+|++||++++++++++|+..+ ..+||+ +.+++.+.+..| .++|.+++.|.... ++
T Consensus 123 ~~~~vldg~~-~~~-~~~~~~d~~i~l~~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~ 199 (227)
T 1cke_A 123 LPGLIADGRD-MGT-VVFPDAPVKIFLDASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADA 199 (227)
T ss_dssp TTCEEEEESS-CCC-CCCTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTC
T ss_pred CCCEEEECCC-ccc-eEecCCCEEEEEeCCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCE
Confidence 4578899874 322 34456899999999999999986643 335787 788888888654 45676677776554 45
Q ss_pred EEEecC
Q 048274 174 AVIEVL 179 (329)
Q Consensus 174 iVI~~~ 179 (329)
++|++.
T Consensus 200 ~~Id~~ 205 (227)
T 1cke_A 200 LVLDST 205 (227)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 888864
No 23
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.18 E-value=5e-11 Score=107.69 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=98.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHh---------
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMK--------- 72 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~--------- 72 (329)
.+|+|+|++|||||| ++.|++.| ++.++++|++++.......+.+.+..++ +.+.+.+..+.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l---g~~~~d~d~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~f~~~~~~ 88 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF---GFTYLDTGAMYRAATYMALKNQLGVEEV-----EALLALLDQHPISFGRSETG 88 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHHHHHTTCCTTCH-----HHHHHHHHHSCCEEEEETTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCceecCCCeeEcceeeeeccCCCcccH-----HHHHHHHHhccccccccCCc
Confidence 479999999999997 66666655 5889999999973111011123322222 22222222111
Q ss_pred ------cCCceecc-----ccc----cccC-----CCCCC-cccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHH
Q 048274 73 ------DGVSVEKP-----IYN----HVTG-----LLDPP-ELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVK 131 (329)
Q Consensus 73 ------~G~~i~~P-----~Yd----~~tg-----~~~~~-~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evr 131 (329)
.|+.+... ++. ...+ .+... ..+.....+|+||..... .+...+|++|||+++++++
T Consensus 89 ~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~--~~l~~~d~vi~L~a~~e~~ 166 (236)
T 1q3t_A 89 DQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT--VVLPQAELKIFLVASVDER 166 (236)
T ss_dssp EEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS--SSGGGCSEEEEEECCHHHH
T ss_pred cceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh--hhccCCCEEEEEECCHHHH
Confidence 11111000 000 0000 00000 112234567789875432 2345679999999999999
Q ss_pred HHHhhcccccccCC--chhhHHHHHhh-cccchhhhccccCCCCc-EEEecC
Q 048274 132 FAWKIQRDMTERGH--SLESIKASIEA-RKPDFDAYIDPQKQYAD-AVIEVL 179 (329)
Q Consensus 132 l~rkI~RD~~eRG~--s~E~V~~~i~~-r~pd~~~yI~Pqk~~AD-iVI~~~ 179 (329)
++|++.|+. .||+ +.+++.+.+.+ +++++.+++.|....+| ++|++.
T Consensus 167 ~~R~~~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 167 AERRYKENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHHHHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 999876643 4664 78888888875 78888888888777777 999874
No 24
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.10 E-value=1.2e-10 Score=97.84 Aligned_cols=153 Identities=10% Similarity=0.110 Sum_probs=86.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
.+|+|+|++|||||| +++.|...+..++++|++.+. .....+ +...++..+.+.+... .|........
T Consensus 2 ~~I~l~G~~GsGKsT---~a~~L~~~g~~~i~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~ 69 (179)
T 3lw7_A 2 KVILITGMPGSGKSE---FAKLLKERGAKVIVMSDVVRK---RYSIEA-----KPGERLMDFAKRLREI-YGDGVVARLC 69 (179)
T ss_dssp CEEEEECCTTSCHHH---HHHHHHHTTCEEEEHHHHHHH---HHHHHC--------CCHHHHHHHHHHH-HCTTHHHHHH
T ss_pred cEEEEECCCCCCHHH---HHHHHHHCCCcEEEHhHHHHH---HHHhcC-----CChhHHHHHHHHHHhh-CCHHHHHHHH
Confidence 589999999999995 555553447889999988763 111111 1111222222222111 0111100000
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccc-hhhhccC---CEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhh--
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYD-ARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEA-- 156 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~-~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~-- 156 (329)
.+.......+.+|++|...... ..+++.+ ++.|||++|++++++|...|+...++.+.+++.+++.+
T Consensus 70 -------~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~ 142 (179)
T 3lw7_A 70 -------VEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREEL 142 (179)
T ss_dssp -------HHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHH
T ss_pred -------HHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhh
Confidence 0000013456799999732211 2344444 48999999999999999989865566788888888743
Q ss_pred cccchhhhccccCCCCcEEEecC
Q 048274 157 RKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 157 r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+++.. +....||++|++.
T Consensus 143 ~~~~~-----~~~~~ad~vId~~ 160 (179)
T 3lw7_A 143 KLGIG-----EVIAMADYIITND 160 (179)
T ss_dssp HHTHH-----HHHHTCSEEEECC
T ss_pred ccChH-----hHHHhCCEEEECC
Confidence 44422 2357899999874
No 25
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.99 E-value=2.3e-10 Score=101.34 Aligned_cols=78 Identities=26% Similarity=0.369 Sum_probs=56.7
Q ss_pred cEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCC--chhhHHHHHhhcc-cchhhhccccCCCCc-E
Q 048274 99 KILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGH--SLESIKASIEARK-PDFDAYIDPQKQYAD-A 174 (329)
Q Consensus 99 ~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~--s~E~V~~~i~~r~-pd~~~yI~Pqk~~AD-i 174 (329)
..+|++|-.. ...+...+|+.|||+++++++++|.++|. ..||+ +.+++.+.+..|. ++..+.+.|....|| +
T Consensus 119 ~~~vi~g~~~--~~~~~~~~~~vi~l~a~~e~~~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~ 195 (219)
T 2h92_A 119 KGIVMDGRDI--GTVVLPDADLKVYMIASVEERAERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAV 195 (219)
T ss_dssp CCEEEEESSC--CCCCCTTCSEEEEEECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCE
T ss_pred CcEEEEcCCc--cceecCCCCEEEEEECCHHHHHHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeE
Confidence 3567787532 11244567999999999999999977653 34787 7888888887664 777666777666677 9
Q ss_pred EEecC
Q 048274 175 VIEVL 179 (329)
Q Consensus 175 VI~~~ 179 (329)
+|++.
T Consensus 196 ~Id~~ 200 (219)
T 2h92_A 196 TLDTT 200 (219)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99864
No 26
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.98 E-value=9.9e-10 Score=100.63 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=98.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhc-------C
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKD-------G 74 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~-------G 74 (329)
.+|+|+|++|||||| ++.+++.| +..+++.|++|+.-.-...+.+++. .|.+.+.+.+..+.- +
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l---g~~~~d~g~~~r~~~~~~~~~gi~~-----~d~~~~~~~~~~~~~~~~~~~~~ 81 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL---GARYLDTGAMYRIATLAVLRAGADL-----TDPAAIEKAAADAEIGVGSDPDV 81 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHHHHHTCCT-----TCHHHHHHHHHTCCEEECCCTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCcccCCcHHHHHHHHHHHcCCCc-----hhhHHHHHHHHhCCEEEeecCCC
Confidence 489999999999997 66676666 4788999999874111112223322 233333333332210 0
Q ss_pred CceeccccccccC----CC-----------------CCC-cccCCC-cEEEEEccccccchhhhccCCEEEEEECCHHHH
Q 048274 75 VSVEKPIYNHVTG----LL-----------------DPP-ELIKPP-KILVIEGLHPMYDARVRELLDFSIYLDISNEVK 131 (329)
Q Consensus 75 ~~i~~P~Yd~~tg----~~-----------------~~~-~~i~p~-~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evr 131 (329)
+.+...--|.... ++ ... ..+... .-+|+||=-... -+-...|++|||++++++|
T Consensus 82 ~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt--~V~pda~lkifl~A~~e~R 159 (233)
T 3r20_A 82 DAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGT--VVLPDADVKIFLTASAEER 159 (233)
T ss_dssp CCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCC--CCCTTCSEEEEEECCHHHH
T ss_pred cEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEeccccee--EEcCCCCEEEEEECCHHHH
Confidence 1110000000000 00 000 011122 457778853221 0333468999999999999
Q ss_pred HHHhhcccccc-cCCchhhHHHHHh-hcccchhhhccccCCCCc-EEEecCCC
Q 048274 132 FAWKIQRDMTE-RGHSLESIKASIE-ARKPDFDAYIDPQKQYAD-AVIEVLPT 181 (329)
Q Consensus 132 l~rkI~RD~~e-RG~s~E~V~~~i~-~r~pd~~~yI~Pqk~~AD-iVI~~~p~ 181 (329)
.+|+.++...+ .+.+.+++.+.|. +-..+..+|+.|.+..+| ++|+..-.
T Consensus 160 a~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l 212 (233)
T 3r20_A 160 ARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDM 212 (233)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTS
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCC
Confidence 99988654322 3668899999886 446677788999988887 99987543
No 27
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.93 E-value=3.6e-09 Score=96.89 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=49.8
Q ss_pred CcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccc-cCCchhhHHHHHhhc-ccchhhhccccCCCCc-E
Q 048274 98 PKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTE-RGHSLESIKASIEAR-KPDFDAYIDPQKQYAD-A 174 (329)
Q Consensus 98 ~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~e-RG~s~E~V~~~i~~r-~pd~~~yI~Pqk~~AD-i 174 (329)
..-+|+||-..... +.+..|++|||+++++++.+|+.++.... .+.+.+++.+.+..| ..+..+.+.|.+..|| +
T Consensus 145 ~~~~V~~gr~~~~~--v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~ 222 (252)
T 4e22_A 145 APGLIADGRDMGTI--VFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADAL 222 (252)
T ss_dssp SSCEEEEESSCCCC--CSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEE
T ss_pred CCCEEEEeceecee--ecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeE
Confidence 34477787443221 33457999999999999999987632221 255788999988754 4456677889888888 8
Q ss_pred EEecCC
Q 048274 175 VIEVLP 180 (329)
Q Consensus 175 VI~~~p 180 (329)
+|++.-
T Consensus 223 ~Idts~ 228 (252)
T 4e22_A 223 VLDSTS 228 (252)
T ss_dssp EEECSS
T ss_pred EEECcC
Confidence 998753
No 28
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.87 E-value=2e-09 Score=92.40 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=80.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCc---hhhhhhccCCCCccccchh-HHHHHHHHHhcCC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDR---TGRKEKGVTALDPRANNFD-LMYEQVKAMKDGV 75 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr---~~~~~~~~~~~~Pea~d~d-~L~~~L~~L~~G~ 75 (329)
|..+|+|+|++|||||| |+.|++.+ +..+|+.|++.+... ..........+......++ .....+.....
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~-- 79 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---GWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID-- 79 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH--
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---CCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Confidence 45689999999999997 66666666 478999999875311 0000000000000011111 11112211110
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccc--hhh----hc--cCCEEEEEECCHHHHHHHhhccccc-ccC-C
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD--ARV----RE--LLDFSIYLDISNEVKFAWKIQRDMT-ERG-H 145 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~--~~l----r~--~~D~~IyVD~~~evrl~rkI~RD~~-eRG-~ 145 (329)
+ .....+|++|...... ..+ .. ..|+.|||++|++++++|...|+.. .|. .
T Consensus 80 ---------------~----~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~ 140 (194)
T 1qf9_A 80 ---------------A----NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDD 140 (194)
T ss_dssp ---------------T----STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTC
T ss_pred ---------------h----cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCC
Confidence 0 0245688888432211 112 22 5789999999999999998877531 111 1
Q ss_pred chhhHHHHHhh----cccchhhhccccCCCCc--EEEecC
Q 048274 146 SLESIKASIEA----RKPDFDAYIDPQKQYAD--AVIEVL 179 (329)
Q Consensus 146 s~E~V~~~i~~----r~pd~~~yI~Pqk~~AD--iVI~~~ 179 (329)
+.+++.+++.. +.|.+..| ..+| ++|++.
T Consensus 141 ~~~~~~~ri~~~~~~~~~~~~~~-----~~~~~~~~id~~ 175 (194)
T 1qf9_A 141 NIESIKKRFNTFNVQTKLVIDHY-----NKFDKVKIIPAN 175 (194)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHHH-----HHTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHhHHHHHHHH-----HhCCCEEEEECC
Confidence 24555555543 33555443 3467 677763
No 29
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.83 E-value=2.7e-09 Score=90.68 Aligned_cols=139 Identities=17% Similarity=0.116 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhh-hhccCCCCccccchhHHHHHHHHHhcCCceeccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRK-EKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPI 81 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~-~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~ 81 (329)
+|+|+|++|||||| |+.|++.|+ ..++++|++++. ..... ...+..++.+.+. +...+.|..+...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~~-~~g~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~------- 76 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIISE-RVGLSVREIFEELGEDNFR-MFEKNLIDELKTL------- 76 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHH-HHTSCHHHHHHHTCHHHHH-HHHHHHHHHHHTC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHH-HhCCCHHHHHHHhCHHHHH-HHHHHHHHHHHhc-------
Confidence 68999999999997 666777664 778999998752 11100 0011112221111 1111233333310
Q ss_pred cccccCCCCCCcccCCCcE-EEEEcc-ccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCC-c-hhhHHHHHhhc
Q 048274 82 YNHVTGLLDPPELIKPPKI-LVIEGL-HPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGH-S-LESIKASIEAR 157 (329)
Q Consensus 82 Yd~~tg~~~~~~~i~p~~v-lIvEGl-~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~-s-~E~V~~~i~~r 157 (329)
.+. ||..|- ..+. +.+ ...|+.|||++|++++++|...|....|+. + .+.+.+.+..+
T Consensus 77 ----------------~~~~Vi~~g~g~~~~-~~l-~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r 138 (168)
T 1zuh_A 77 ----------------KTPHVISTGGGIVMH-ENL-KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKR 138 (168)
T ss_dssp ----------------SSCCEEECCGGGGGC-GGG-TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHH
T ss_pred ----------------CCCEEEECCCCEech-hHH-hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHH
Confidence 011 222221 1111 112 236899999999999999977662111222 2 45566666666
Q ss_pred ccchhhhccccCCCCcEEEecC
Q 048274 158 KPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 158 ~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
.|.|. ..||++|++.
T Consensus 139 ~~~~~-------~~a~~~Id~~ 153 (168)
T 1zuh_A 139 QALYE-------KNASFIIDAR 153 (168)
T ss_dssp HHHHH-------HTCSEEEEGG
T ss_pred HHHHH-------HHCCEEEECC
Confidence 66553 4589999874
No 30
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.83 E-value=1.3e-08 Score=89.12 Aligned_cols=137 Identities=12% Similarity=0.113 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
+|+|+|++|||||| ++.|++.+ +..+|++|+++..........+..+ .+......+ +.+....
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~~~~~~~~~~~~g~~~--~~~~~~~~~-~~l~~~~---------- 83 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDALHPPENIRKMSEGIPL--TDDDRWPWL-AAIGERL---------- 83 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGGCCHHHHHHHHHTCCC--CHHHHHHHH-HHHHHHH----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcCcchhhHHHHhcCCCC--CchhhHHHH-HHHHHHH----------
Confidence 79999999999997 66666666 5779999999753111111112211 111111111 1121111
Q ss_pred ccccCCCCCCcccCCCcEEEEEcccccc--chhhhccC---CEEEEEECCHHHHHHHhhcccccccCCchhhHHHH-Hhh
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMY--DARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGHSLESIKAS-IEA 156 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~--~~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~-i~~ 156 (329)
.....+|+++..... ...+.+.. +..|||++++++.++|...|+. ..+.+++++. +..
T Consensus 84 -------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~---~~~~~~~~~~~~~~ 147 (202)
T 3t61_A 84 -------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG---HFMPSSLLQTQLET 147 (202)
T ss_dssp -------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS---SCCCHHHHHHHHHH
T ss_pred -------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc---cCCCHHHHHHHHHh
Confidence 112234555543321 12233433 6899999999999999887753 1223444443 333
Q ss_pred cccchhhhccccCCCCcEEEecC
Q 048274 157 RKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 157 r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.+. ....+|++|++.
T Consensus 148 ~~~~-------~~~~~~~~Id~~ 163 (202)
T 3t61_A 148 LEDP-------RGEVRTVAVDVA 163 (202)
T ss_dssp CCCC-------TTSTTEEEEESS
T ss_pred cCCC-------CCCCCeEEEeCC
Confidence 3332 345689999875
No 31
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.81 E-value=5.5e-09 Score=89.72 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=65.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCcee--
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVE-- 78 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~-- 78 (329)
..+|+|.|++|||||| |+.|++.+ +..+|++|++.+...... -+. .-..+.+.+ ..|....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~~~~~~~~----~~~------~~~~~~~~~---~~g~~~~~~ 66 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---GYTHLSAGELLRDERKNP----DSQ------YGELIEKYI---KEGKIVPVE 66 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHHHHHHHCT----TST------THHHHHHHH---HTTCCCCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHHHHHHhcc----CCh------HHHHHHHHH---HCCCcCCHH
Confidence 3689999999999997 66666666 478899999875311000 000 000111111 1121100
Q ss_pred --ccccccccCCCCCC-cccCCCcEEEEEccccccc--hhhhc------cCCEEEEEECCHHHHHHHhhcccc
Q 048274 79 --KPIYNHVTGLLDPP-ELIKPPKILVIEGLHPMYD--ARVRE------LLDFSIYLDISNEVKFAWKIQRDM 140 (329)
Q Consensus 79 --~P~Yd~~tg~~~~~-~~i~p~~vlIvEGl~~l~~--~~lr~------~~D~~IyVD~~~evrl~rkI~RD~ 140 (329)
.+.... .+... ........+|++|...... ..+.. ..|+.||+++|++++++|...|+.
T Consensus 67 ~~~~~l~~---~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 67 ITISLLKR---EMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHHHHH---HHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 000000 00000 0112356788999865431 11221 468999999999999999888864
No 32
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.80 E-value=3.7e-09 Score=91.49 Aligned_cols=117 Identities=10% Similarity=0.057 Sum_probs=65.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCch---hhhhhccCCCC-ccccchhHHHHHHHHHhcCCc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRT---GRKEKGVTALD-PRANNFDLMYEQVKAMKDGVS 76 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~---~~~~~~~~~~~-Pea~d~d~L~~~L~~L~~G~~ 76 (329)
..+|+|+|++|||||| |+.|++.| +..+|++|++++.... .........+. .+....+.+...+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i---- 84 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---GFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAM---- 84 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHH----
Confidence 3589999999999997 67777766 4889999999863110 00000000000 00000011111111000
Q ss_pred eeccccccccCCCCCCcccCCCcEEEEEccccccch--hhhc---cCCEEEEEECCHHHHHHHhhcccc
Q 048274 77 VEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDA--RVRE---LLDFSIYLDISNEVKFAWKIQRDM 140 (329)
Q Consensus 77 i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~--~lr~---~~D~~IyVD~~~evrl~rkI~RD~ 140 (329)
. ........+|++|....... .+.. ..|+.|||+++++++++|...|+.
T Consensus 85 -------------~--~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 85 -------------V--ASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp -------------H--HHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred -------------h--cccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 0 00123467889986543211 1232 579999999999999999877753
No 33
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.79 E-value=3e-09 Score=89.99 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCc-hhhhhhccCCCCccccchhHHH-HHHHHHhcCCceecc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDR-TGRKEKGVTALDPRANNFDLMY-EQVKAMKDGVSVEKP 80 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr-~~~~~~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i~~P 80 (329)
+|+|+|++|||||| ++.|++.|+ ..++++|++.+..- ....+ .+..++...+ +.+. +.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~g~~~~~-~~~~~~~~~~--~~~~~~~l~~l~-------- 67 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEVQKREGLSIPQ-IFEKKGEAYF--RKLEFEVLKDLS-------- 67 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHHTSCHHH-HHHHSCHHHH--HHHHHHHHHHHT--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHHHHHcCCCHHH-HHHHhChHHH--HHHHHHHHHHHh--------
Confidence 58999999999997 666776664 67899999875210 00000 0011111111 1111 1222211
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccchhhh---ccCCEEEEEECCHHHHHHHhhcccccccC-Cc--hhhHHHHH
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVR---ELLDFSIYLDISNEVKFAWKIQRDMTERG-HS--LESIKASI 154 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr---~~~D~~IyVD~~~evrl~rkI~RD~~eRG-~s--~E~V~~~i 154 (329)
....+||..|--....+..+ ...|+.|||++|++++++|...|. .|. .+ .+.+.+.+
T Consensus 68 ---------------~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~~~i~~~~ 130 (168)
T 2pt5_A 68 ---------------EKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK--ERPLLKRPLDEIKNLF 130 (168)
T ss_dssp ---------------TSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT--CCBGGGSCGGGTHHHH
T ss_pred ---------------ccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC--CCCCCcchHHHHHHHH
Confidence 12356666542111112211 126999999999999999877653 121 11 33455555
Q ss_pred hhcccchhhhccccCCCCcEEEecC
Q 048274 155 EARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 155 ~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
..+.|.| .. ||++| +.
T Consensus 131 ~~~~~~~-------~~-~~~~i-~~ 146 (168)
T 2pt5_A 131 EERRKIY-------SK-ADIKV-KG 146 (168)
T ss_dssp HHHHHHH-------TT-SSEEE-EC
T ss_pred HHHHHHH-------Hh-CCEEE-CC
Confidence 5554432 24 89998 53
No 34
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.79 E-value=9.4e-09 Score=89.81 Aligned_cols=135 Identities=18% Similarity=0.278 Sum_probs=74.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC--c--hhh----hhh-ccCCCCccccchhHHHHHHHH-H
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD--R--TGR----KEK-GVTALDPRANNFDLMYEQVKA-M 71 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d--r--~~~----~~~-~~~~~~Pea~d~d~L~~~L~~-L 71 (329)
.+|+|+|++|||||| ++.|++.+ +..+|++|++++.. + ... ... .-..+.|+......+.+.+.. +
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY---SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS---SCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence 479999999999997 66676665 57899999987631 0 000 000 001122222222222222221 1
Q ss_pred hcCCceeccccccccCCCCCCcccCCCcEEEEEccccccc-----hhhhccCCEEEEEECCHHHHHHHhhcccccccCC-
Q 048274 72 KDGVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD-----ARVRELLDFSIYLDISNEVKFAWKIQRDMTERGH- 145 (329)
Q Consensus 72 ~~G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~-----~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~- 145 (329)
..| .+.+|++|..--.+ .......|+.|||++|+++.++|...|+.. +|+
T Consensus 93 ~~g-----------------------~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~-~~~~ 148 (203)
T 1ukz_A 93 KAN-----------------------KHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKT-SGRS 148 (203)
T ss_dssp HTT-----------------------CCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHH-HCCT
T ss_pred ccC-----------------------CCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcccc-CCCC
Confidence 111 14566777532111 011123799999999999999998888632 233
Q ss_pred --chhhHHHH----Hhhcccchhhh
Q 048274 146 --SLESIKAS----IEARKPDFDAY 164 (329)
Q Consensus 146 --s~E~V~~~----i~~r~pd~~~y 164 (329)
+.+.+.++ +..++|.++.|
T Consensus 149 ~~~~e~~~~r~~~~~~~~~~~~~~~ 173 (203)
T 1ukz_A 149 DDNIESIKKRFNTFKETSMPVIEYF 173 (203)
T ss_dssp TCSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 34555444 33466766654
No 35
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.75 E-value=1.7e-09 Score=93.20 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|..+|+|+|++|||||| |+.|++.| ++.+|++|++.+
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~~l---g~~~id~D~~~~ 38 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAKAL---GVGLLDTDVAIE 38 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHHHH---TCCEEEHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEeCchHHH
Confidence 66789999999999997 66666666 477999999865
No 36
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.69 E-value=5.4e-09 Score=89.87 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=74.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhh-hccCCCCccccchhHHH-HHHHHHhcCCcee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKE-KGVTALDPRANNFDLMY-EQVKAMKDGVSVE 78 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~-~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i~ 78 (329)
.++|.|+|++|||||| |+.|++.| +..+|++|++... ...... ..+..++. ..+..++ +.+..+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~~~i~~d~~~~~-~~g~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~---- 74 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KRILYDSDKEIEK-RTGADIAWIFEMEGE--AGFRRREREMIEALCKL---- 74 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CCCEEEHHHHHHH-HHTSCHHHHHHHHHH--HHHHHHHHHHHHHHHHS----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEChHHHHH-HcCCChhhHHHHhCH--HHHHHHHHHHHHHHHhc----
Confidence 3478899999999997 77777766 4778999998542 111000 00000000 1111222 223333221
Q ss_pred ccccccccCCCCCCcccCCCcEEEEEccccccchhhhcc---CCEEEEEECCHHHHHHHhh-cccccccCCc-hh---h-
Q 048274 79 KPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVREL---LDFSIYLDISNEVKFAWKI-QRDMTERGHS-LE---S- 149 (329)
Q Consensus 79 ~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~---~D~~IyVD~~~evrl~rkI-~RD~~eRG~s-~E---~- 149 (329)
..++|..|--...++..++. .++.||+++++++.++|.. .++ ..|+.. .+ +
T Consensus 75 -------------------~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~ 134 (185)
T 3trf_A 75 -------------------DNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEK 134 (185)
T ss_dssp -------------------SSCEEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHH
T ss_pred -------------------CCcEEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHH
Confidence 22444444333333333332 2489999999999877642 222 224432 22 2
Q ss_pred HHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 150 IKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 150 V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.+.+..+.|.|.+ .||++|++.
T Consensus 135 l~~~~~~r~~~y~~-------~ad~~Idt~ 157 (185)
T 3trf_A 135 LQQLNEIRKPLYQA-------MADLVYPTD 157 (185)
T ss_dssp HHHHHHHHHHHHHH-------HCSEEEECT
T ss_pred HHHHHHHHHHHHhh-------cCCEEEECC
Confidence 23334456666643 499999974
No 37
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.64 E-value=7.8e-09 Score=87.63 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=30.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|-.+|.|+|++|||||| |+.|++.| +..++++|++++
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~~l---g~~~id~d~~~~ 38 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELARAL---GYEFVDTDIFMQ 38 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHHHH---TCEEEEHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCcEEcccHHHH
Confidence 55679999999999997 66677666 478999999875
No 38
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.59 E-value=3.1e-07 Score=80.49 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|+|+|++|||||| ++.++..+ +..+++.|++..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~ 65 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHS 65 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEEccccccc
Confidence 489999999999997 66676666 578899999864
No 39
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=5.2e-08 Score=85.42 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.|.|++|||||| ++.|++.| +..++++|++..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l---~~~~i~~d~~~~ 61 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL---NVPFIDLDWYIE 61 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---TCCEEEHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc---CCCEEcchHHHH
Confidence 378999999999998 77777777 467899999874
No 40
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.54 E-value=1.4e-07 Score=80.92 Aligned_cols=34 Identities=12% Similarity=-0.059 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
+|+|+|++|||||| ++.|++.|.+.+..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999 88888888656778888875
No 41
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.54 E-value=4.4e-08 Score=82.45 Aligned_cols=143 Identities=11% Similarity=-0.033 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceecccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPIY 82 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~Y 82 (329)
+|.|+|++|||||| ++.|++.+ +..+++.|.|+.... ....+.+....+..|..+..-.|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~~~i~~d~~~~~~~----------------~~~~~~~~~~~l~~~~~vi~dr~ 63 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KYPIIKGSSFELAKS----------------GNEKLFEHFNKLADEDNVIIDRF 63 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CCCEEECCCHHHHTT----------------CHHHHHHHHHHHTTCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeeecCcccccchh----------------HHHHHHHHHHHHHhCCCeEEeee
Confidence 68999999999997 66666666 477899998875311 12233334445555554321111
Q ss_pred ccccCCCCCCcccCCCcEEEEEccccccchhhh---ccCCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHhhccc
Q 048274 83 NHVTGLLDPPELIKPPKILVIEGLHPMYDARVR---ELLDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIEARKP 159 (329)
Q Consensus 83 d~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr---~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~p 159 (329)
-...--+... .... ..+...+...+. ...|+.||+++++++..+|...|. |.....+..+.+ ..
T Consensus 64 ~~~~~v~~~~--~~~~-----~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~---r~~~~~~~~~~~---~~ 130 (173)
T 3kb2_A 64 VYSNLVYAKK--FKDY-----SILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG---DEYIEGKDIDSI---LE 130 (173)
T ss_dssp HHHHHHHTTT--BTTC-----CCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS---CSCCCHHHHHHH---HH
T ss_pred ecchHHHHHH--HHHh-----hHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC---CcchhhhHHHHH---HH
Confidence 1000000000 0000 000000101111 236899999999999999876652 223223333332 22
Q ss_pred chhhhccccCCCCcEEEecC
Q 048274 160 DFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 160 d~~~yI~Pqk~~ADiVI~~~ 179 (329)
.|+... +....++++|++.
T Consensus 131 ~~~~~~-~~~~~~~~~id~~ 149 (173)
T 3kb2_A 131 LYREVM-SNAGLHTYSWDTG 149 (173)
T ss_dssp HHHHHH-HTCSSCEEEEETT
T ss_pred HHHHHH-hhcCCCEEEEECC
Confidence 233221 1224689999864
No 42
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.53 E-value=8e-08 Score=84.64 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.|+|+|++|||||| |+.|++.+ ++.+|++|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~r~ 37 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEeeHHHHHHH
Confidence 47899999999997 66666655 5789999998864
No 43
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.52 E-value=9.7e-08 Score=81.71 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC--eEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT--TTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~--v~vI~~Ddyhr 40 (329)
.+|.|+|++|||||| ++.|++.|+..+ ..++++|++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r 44 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF 44 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence 579999999999999 888888887554 78899998865
No 44
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.51 E-value=1.6e-08 Score=85.77 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=28.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|..+|+|+|++|||||| ++.|+..+ +..++++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l---~~~~id~d~~~~ 40 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSDQEIE 40 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT---TCEEEEHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEeccHHHH
Confidence 34689999999999997 66666665 467889888754
No 45
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.50 E-value=5.2e-08 Score=84.70 Aligned_cols=157 Identities=15% Similarity=0.029 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCch-hhhhhccCCCCccccchhHHHHHHHHHhcCCceecc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRT-GRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKP 80 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~-~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P 80 (329)
.+|+|+|++|||||| ++.++..+.. ... +......+..+. .....++.+. +.+.+... ...|..+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~-~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~ 76 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPST-SYK-YSISMTTRQMREGEVDGVDYFFK-----TRDAFEAL---IKDDQFIEYA 76 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTC-CEE-CCCCEECSCCCTTCCBTTTBEEC-----CHHHHHHH---HHTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC-CeE-EecccccCCCCCCccCCCceEEc-----CHHHHHHH---HHcCCeEEEE
Confidence 489999999999997 6666666522 111 111111111110 0000011111 11222211 3456666655
Q ss_pred cccccc-CCCCC--CcccCCCcEEEEEccccccchhhhccC-C-EEEEEE-CCHHHHHHHhhcccccccCCchhhHHHHH
Q 048274 81 IYNHVT-GLLDP--PELIKPPKILVIEGLHPMYDARVRELL-D-FSIYLD-ISNEVKFAWKIQRDMTERGHSLESIKASI 154 (329)
Q Consensus 81 ~Yd~~t-g~~~~--~~~i~p~~vlIvEGl~~l~~~~lr~~~-D-~~IyVD-~~~evrl~rkI~RD~~eRG~s~E~V~~~i 154 (329)
.+.... |.... ...+.....+|+++.+... ..+++.+ | +.+|+. +++++..+|...|+ +.+.+++.+++
T Consensus 77 ~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~----~~~~~~~~~rl 151 (207)
T 2j41_A 77 EYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRG----TESDEKIQSRI 151 (207)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC---------------------------
T ss_pred eECCeecCCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcC----CCCHHHHHHHH
Confidence 543211 11100 0122345789999876543 4566666 7 556665 45778888766664 34566777777
Q ss_pred hhcccchhhhccccCCCCcEEEecC
Q 048274 155 EARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 155 ~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
..+++.... ...||++|.+.
T Consensus 152 ~~~~~~~~~-----~~~~d~vI~n~ 171 (207)
T 2j41_A 152 NEARKEVEM-----MNLYDYVVVND 171 (207)
T ss_dssp ----CGGGG-----GGGCSEEEECS
T ss_pred HHHHHHHhc-----cccCCEEEECC
Confidence 766665432 36789999874
No 46
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.48 E-value=6.7e-07 Score=76.06 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|+|+|++|||||| ++.++..+ +..++++|++..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~ 44 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP 44 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc
Confidence 589999999999997 66666665 578999999864
No 47
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.48 E-value=2.6e-09 Score=96.18 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=41.0
Q ss_pred CCceeccccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcc
Q 048274 74 GVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 74 G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~R 138 (329)
|+.+..++|.+.+..... ..+++..+.++++++.+..+......|++||||+|++++++|..+|
T Consensus 104 ~r~v~~dry~~s~~ayq~-~~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R 167 (230)
T 2vp4_A 104 ERSIFSARYCFVENMRRN-GSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQR 167 (230)
T ss_dssp ESCHHHHHHTHHHHHHHH-TSSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHH
T ss_pred cCCccccHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHc
Confidence 344555556554432211 1344455677777766554434567899999999999999986655
No 48
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.48 E-value=1.3e-07 Score=84.02 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=47.4
Q ss_pred EEEEccccccchhhhcc-CCEEEEEECCHHHHHHHhhcccccccCCchhhHHHHHh----hcccchhhh--cccc-CCCC
Q 048274 101 LVIEGLHPMYDARVREL-LDFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASIE----ARKPDFDAY--IDPQ-KQYA 172 (329)
Q Consensus 101 lIvEGl~~l~~~~lr~~-~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i~----~r~pd~~~y--I~Pq-k~~A 172 (329)
+|++|--+.+ -+++. -.++|||++|++++.+|..+| .|.+.+++.+.+. .|.+-|..| +.|. ...+
T Consensus 101 ~Vi~Gr~g~~--vl~~~~~~~~V~L~A~~e~r~~R~~~~----~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~ 174 (201)
T 3fdi_A 101 FVIVGRCAEE--ILSDNPNMISAFILGDKDTKTKRVMER----EGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTY 174 (201)
T ss_dssp EEEESTTHHH--HTTTCTTEEEEEEEECHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGC
T ss_pred EEEEECCcch--hcCCCCCeEEEEEECCHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccC
Confidence 4555543333 12332 259999999999999987765 3677777766553 456666654 3442 3568
Q ss_pred cEEEecC
Q 048274 173 DAVIEVL 179 (329)
Q Consensus 173 DiVI~~~ 179 (329)
|++|+..
T Consensus 175 dl~Idt~ 181 (201)
T 3fdi_A 175 DICIKIG 181 (201)
T ss_dssp SEEEEES
T ss_pred CEEEECC
Confidence 9999874
No 49
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.46 E-value=3.6e-07 Score=78.09 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyhr 40 (329)
.+|.|.|++|||||| ++.|++.|... .+.++++|+++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 468999999999999 88888888743 377777787764
No 50
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.45 E-value=6.5e-07 Score=77.69 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCcEEEEEccccccchhhhccCC--EEEEEEC-CHHHHHHHhhcccccccCCchhhHHHHHhhcccchhhhccccCCCCc
Q 048274 97 PPKILVIEGLHPMYDARVRELLD--FSIYLDI-SNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYAD 173 (329)
Q Consensus 97 p~~vlIvEGl~~l~~~~lr~~~D--~~IyVD~-~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~AD 173 (329)
....+++++-.... ..+++.++ ..||+.+ ++++..+|..+|+ +.+.+++.+++.++++.... ...||
T Consensus 96 ~g~~vi~d~~~~~~-~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~----~~~~~~i~~rl~~~~~~~~~-----~~~~d 165 (205)
T 3tr0_A 96 AGRDVLLEIDWQGA-RQIRELFPPALSIFILPPSIEALRERLIKRR----QDDTAIIEQRLALAREEMAH-----YKEFD 165 (205)
T ss_dssp TTCEEEEECCHHHH-HHHHHHCTTCEEEEEECSCHHHHHHHHHTCT----TSCSSTHHHHHHHHHHHHTT-----GGGCS
T ss_pred cCCeEEEEECHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhc-----ccCCC
Confidence 45577788532221 23444444 5688877 5888888877774 34667788888877666543 37799
Q ss_pred EEEecC
Q 048274 174 AVIEVL 179 (329)
Q Consensus 174 iVI~~~ 179 (329)
+||.|-
T Consensus 166 ~vi~n~ 171 (205)
T 3tr0_A 166 YLVVND 171 (205)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999874
No 51
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.44 E-value=2.2e-07 Score=81.85 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.|+|+|++|||||| |+.|++.+ ++.+|++|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeHHHHHHH
Confidence 38899999999997 66666555 5789999998874
No 52
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.43 E-value=1.1e-07 Score=87.71 Aligned_cols=140 Identities=17% Similarity=0.094 Sum_probs=73.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC-C-chhhhhhccCCCCccccchhHHH-HHHHHHhcCCce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL-D-RTGRKEKGVTALDPRANNFDLMY-EQVKAMKDGVSV 77 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~-d-r~~~~~~~~~~~~Pea~d~d~L~-~~L~~L~~G~~i 77 (329)
..+|+|+|++|||||| ++.|++.| +..++++|+++.. . .....+ .+..++.+. |..++ +.+..+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l---g~~~~d~d~~~~~~~~g~~i~~-i~~~~ge~~--fr~~e~~~l~~l~~~--- 118 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL---GYTFFDCDTLIEQAMKGTSVAE-IFEHFGESV--FREKETEALKKLSLM--- 118 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEHHHHHHHHSTTSCHHH-HHHHHCHHH--HHHHHHHHHHHHHHH---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---CCcEEeCcHHHHHHhcCccHHH-HHHHhCcHH--HHHHHHHHHHHHHhh---
Confidence 4579999999999997 66677666 4778999988752 1 111100 011111111 11222 233333210
Q ss_pred eccccccccCCCCCCcccCCCcEEEEEccccccchhhhcc--CCEEEEEECCHHHHHHHhhcccccccCCc---------
Q 048274 78 EKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVREL--LDFSIYLDISNEVKFAWKIQRDMTERGHS--------- 146 (329)
Q Consensus 78 ~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~--~D~~IyVD~~~evrl~rkI~RD~~eRG~s--------- 146 (329)
..+.||..|--....+.-++. -+++|||++++++..+|..+|....|+..
T Consensus 119 -------------------~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~ 179 (250)
T 3nwj_A 119 -------------------YHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTY 179 (250)
T ss_dssp -------------------CSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CH
T ss_pred -------------------cCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccch
Confidence 023555555322222222222 28999999999999888665332334332
Q ss_pred ---hhhHHHHHhhcccchhhhccccCCCCcEEEe
Q 048274 147 ---LESIKASIEARKPDFDAYIDPQKQYADAVIE 177 (329)
Q Consensus 147 ---~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~ 177 (329)
.+.+.+.+..|.|.|.. ||++|.
T Consensus 180 ~~~~~~l~~l~~eR~~lY~~--------ad~vi~ 205 (250)
T 3nwj_A 180 TAALNRLSTIWDARGEAYTK--------ASARVS 205 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------SSEEEE
T ss_pred hhHHHHHHHHHHHHHHHHhh--------CCEEEE
Confidence 13344556677777652 899993
No 53
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.43 E-value=5.4e-07 Score=77.97 Aligned_cols=37 Identities=5% Similarity=-0.127 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+|+|+|++|||||| ++.|++.|. ++.+|++|++.+.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~--g~~~id~d~~~~~ 48 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELD--GFQHLEVGKLVKE 48 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST--TEEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC--CCEEeeHHHHHHH
Confidence 479999999999997 666666521 6899999998763
No 54
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.42 E-value=3e-07 Score=80.27 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.|+|++|||||| |+.|++.++ ..+|++|++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r 56 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFR 56 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHH
Confidence 479999999999998 777777663 66899999875
No 55
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.41 E-value=3.6e-07 Score=78.67 Aligned_cols=34 Identities=12% Similarity=-0.050 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
+|+|+|++|||||| ++.|++.|...+..++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999 88888888766777776654
No 56
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.40 E-value=1.7e-07 Score=80.01 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCC-ccccchhHHH-HHHHHHhcCCceecc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALD-PRANNFDLMY-EQVKAMKDGVSVEKP 80 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~-Pea~d~d~L~-~~L~~L~~G~~i~~P 80 (329)
+|.|+|++|||||| |+.|++.| ++..+++|++++.. ...... ..+. .....+..++ +.+..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~~~~~d~d~~~~~~-~g~~~~--~~~~~~g~~~~~~~~~~~~~~l~~------- 72 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---DLVFLDSDFLIEQK-FNQKVS--EIFEQKRENFFREQEQKMADFFSS------- 72 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHHHHH-HTSCHH--HHHHHHCHHHHHHHHHHHHHHHTT-------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEEcccHHHHHH-cCCCHH--HHHHHcCHHHHHHHHHHHHHHHHc-------
Confidence 58999999999998 77777766 47889999987521 000000 0000 0000111111 12222221
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccchhhhccCCEEEEEECCHHHHHHHhhcccccccCCc--hhhHHHHHhhcc
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYDARVRELLDFSIYLDISNEVKFAWKIQRDMTERGHS--LESIKASIEARK 158 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~~~lr~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s--~E~V~~~i~~r~ 158 (329)
...+||.-|-....+..+++ .++.||+++++++..+|...|....|... .+.+.+.+..+.
T Consensus 73 ----------------~~~~vi~~g~~~~~~~~l~~-~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~ 135 (175)
T 1via_A 73 ----------------CEKACIATGGGFVNVSNLEK-AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERL 135 (175)
T ss_dssp ----------------CCSEEEECCTTGGGSTTGGG-GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHH
T ss_pred ----------------cCCEEEECCCCEehhhHHhc-CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHH
Confidence 12233332321111111222 47999999999999887655521123222 344555555565
Q ss_pred cchhhhccccCCCCcEEEecC
Q 048274 159 PDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 159 pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
|.|. +.+|++|+..
T Consensus 136 ~~y~-------~~~~~~Idt~ 149 (175)
T 1via_A 136 SKYE-------QKANFILNIE 149 (175)
T ss_dssp HHHH-------HHCSEEEECT
T ss_pred HHHH-------hcCCEEEECC
Confidence 5553 3478999864
No 57
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.40 E-value=2.2e-07 Score=80.01 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+|.|+|++|||||| |+.|++.| +..+|++|++++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l---~~~~i~~d~~~~~ 46 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY---GYTHLSTGDLLRS 46 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCeEEcHHHHHHH
Confidence 479999999999998 77777766 4779999998763
No 58
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.37 E-value=6.3e-07 Score=76.73 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
++|.|+|++|||||| ++.|++.+ +..++++|++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~---~~~~~~~d~~~~ 47 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS---GLKYINVGDLAR 47 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh---CCeEEEHHHHHh
Confidence 468899999999997 66666666 578899999865
No 59
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.36 E-value=3.3e-08 Score=85.52 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=35.4
Q ss_pred ccCCEEEEEECCHHHHHHHhhcccccccCCchhh-----HHHHHhhcccchhhhccccC-CCCcEEEecC
Q 048274 116 ELLDFSIYLDISNEVKFAWKIQRDMTERGHSLES-----IKASIEARKPDFDAYIDPQK-QYADAVIEVL 179 (329)
Q Consensus 116 ~~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~-----V~~~i~~r~pd~~~yI~Pqk-~~ADiVI~~~ 179 (329)
...|+.|||+++++++++|...| |++.+. ..+++..+ |..+..+.. ..+|++|++-
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R-----~r~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~Id~~ 184 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKR-----GRSEELLIGEEYWETLNKN---YEEFYKQNVYDFPFFVVDAE 184 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHH-----TCHHHHHSCHHHHHHHHHH---HHHHHHHHTTTSCEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc-----CChhhhcCcHHHHHHHHHH---HHHHHHHccccCcEEEEECC
Confidence 45799999999999999885443 555442 33333332 222333333 6789999864
No 60
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.32 E-value=3.7e-07 Score=82.74 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=40.6
Q ss_pred CEEEEEECCHHHHHHHhhcccccccCCchhhHHHHH----hhcccchhhh--cccc-CCCCcEEEecC
Q 048274 119 DFSIYLDISNEVKFAWKIQRDMTERGHSLESIKASI----EARKPDFDAY--IDPQ-KQYADAVIEVL 179 (329)
Q Consensus 119 D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V~~~i----~~r~pd~~~y--I~Pq-k~~ADiVI~~~ 179 (329)
.++|||++|++++.+|..+| .|.+.+++.+.+ ..|.+-|..| ++|. .+.+|++|+..
T Consensus 138 ~~~VfL~A~~e~r~~Ri~~~----~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~ 201 (223)
T 3hdt_A 138 LIRIFVYTDKVKKVQRVMEV----DCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTT 201 (223)
T ss_dssp EEEEEEECCHHHHHHHHHHH----HTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECT
T ss_pred eEEEEEECCHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECC
Confidence 58999999999999987665 366766665544 3567777755 2332 35699999864
No 61
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.31 E-value=1.2e-06 Score=79.66 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+|+|+|++|||||| |+.|++.+ ++.+|+.|+..+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~---g~~~is~~~~~r~ 66 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH---CYCHLSTGDLLRE 66 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCeEEecHHHHHH
Confidence 479999999999997 66666655 5889999998764
No 62
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.25 E-value=5.4e-06 Score=71.86 Aligned_cols=27 Identities=7% Similarity=-0.104 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
.+|.|.|++|||||| ++.|++.|...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 689999999999999 888888886543
No 63
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.23 E-value=3.8e-06 Score=76.91 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEE--Ecccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVI--CLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI--~~Ddyh 39 (329)
.+|.|+|++|||||| |+.|+..|...+..++ +.|.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 479999999999999 8888888754444444 778765
No 64
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.19 E-value=5.7e-06 Score=70.15 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=31.1
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|..+|.|+|++|||||| ++.|++.|.. ....++.|+++.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~-~~~~~~~D~~~~ 41 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-PWLAFGVDSLIE 41 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS-CEEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC-CeEEeccchHhh
Confidence 35689999999999998 7788887753 455677998864
No 65
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.19 E-value=3.3e-06 Score=72.24 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=26.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
.+|+|+|++|||||| ++.|+..|...+..++.+|
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 479999999999998 8888888754454455444
No 66
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.17 E-value=1.6e-06 Score=76.07 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=76.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHHHHHHhcCCceeccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKAMKDGVSVEKPI 81 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~L~~L~~G~~i~~P~ 81 (329)
++|.|+|++|||||| ++.|++.+.. .. ..+.- |. .|+++... ..-.+-.-.+.+.+.+. +.+|.-++...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~-~~-~~~~~--~t-tR~~~~~e-~~g~~~~~~~~~~~~~~---~~~~~~~~~~~ 83 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPS-RF-RFSIS--CT-TRNKREKE-TNGVDYYFVDKDDFERK---LKEGQFLEFDK 83 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTT-TE-EECCE--EE-CSCCCTTC-CBTTTEEECCHHHHHHH---HHTTCEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCcc-ce-eeeee--ec-CCCCCCCC-CCCcceeeCCHHHHHHH---HHcCCCEEeHH
Confidence 479999999999998 6777766632 11 11111 11 12222100 00000011122333322 23455554443
Q ss_pred ccc-ccCCCCCC--cccCCCcEEEEEccccccchhhhccC---C-EEEEEE-CCHHHHHHHhhcccccccCC-chhhHHH
Q 048274 82 YNH-VTGLLDPP--ELIKPPKILVIEGLHPMYDARVRELL---D-FSIYLD-ISNEVKFAWKIQRDMTERGH-SLESIKA 152 (329)
Q Consensus 82 Yd~-~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~lr~~~---D-~~IyVD-~~~evrl~rkI~RD~~eRG~-s~E~V~~ 152 (329)
|.. ..++.... ..+.....+|+++-.... ..+++.+ + +.|||+ +++++..+|...| |. +.+++.+
T Consensus 84 ~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R-----~~~~~~~i~~ 157 (204)
T 2qor_A 84 YANNFYGTLKSEYDLAVGEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNR-----NTEKPEEINK 157 (204)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTC-----TTSCHHHHHH
T ss_pred hCCCeecCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHc-----CCCCHHHHHH
Confidence 321 11111100 122346678886533222 2345544 3 889999 7888887775444 53 4566666
Q ss_pred HHhh-cccchhhhccccCCCCcEEEecC
Q 048274 153 SIEA-RKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 153 ~i~~-r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
++.. +.+.... ....+|++|.|.
T Consensus 158 rl~~~~~~~~~~----~~~~~d~vi~n~ 181 (204)
T 2qor_A 158 RMQELTREMDEA----DKVGFNYFIVND 181 (204)
T ss_dssp HHHHHHHHHHHH----HHHTCSEEEECS
T ss_pred HHHHHHHHHHHh----hhccCcEEEECc
Confidence 6653 3332211 236789998774
No 67
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.16 E-value=2.1e-06 Score=73.37 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=29.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|+|+|++|||||| ++.|++.+ +..++++|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l---~~~~i~~d~~~~ 40 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL---GFKKLSTGDILR 40 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TCEEECHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCeEecHHHHHH
Confidence 479999999999998 77777666 478899998775
No 68
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.14 E-value=9e-07 Score=75.94 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
..+|.|+|++|||||| ++.|++.| +..+++.|.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~~i~~D~~~ 40 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLPLLSKDAFK 40 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCCEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEecHHHHH
Confidence 4689999999999998 77777777 46689998874
No 69
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.11 E-value=2.2e-06 Score=76.33 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+|.|.|++|||||| ++.|++.| +..+|++|++.+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF---ELKHLSSGDLLRD 44 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS---SSEEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCeEEechHHHHH
Confidence 479999999999997 66777666 4789999998763
No 70
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.09 E-value=3.2e-06 Score=71.40 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=29.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|..+|.|.|++|||||| |+.|++. ..+..+|++|.+..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~--~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAK--NPGFYNINRDDYRQ 39 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH--STTEEEECHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhh--cCCcEEecHHHHHH
Confidence 78899999999999997 5555552 23688999988754
No 71
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.09 E-value=4.4e-06 Score=72.73 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
.+|+|+|++|||||| ++.|++.|+...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 589999999999999 888888876543
No 72
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.07 E-value=8.2e-07 Score=76.95 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCcEEEE----EccccccchhhhccCCEEEEEECCH-HHHHHHhhcccccccCCch-hhHHHHHhhcccchhhhccccCC
Q 048274 97 PPKILVI----EGLHPMYDARVRELLDFSIYLDISN-EVKFAWKIQRDMTERGHSL-ESIKASIEARKPDFDAYIDPQKQ 170 (329)
Q Consensus 97 p~~vlIv----EGl~~l~~~~lr~~~D~~IyVD~~~-evrl~rkI~RD~~eRG~s~-E~V~~~i~~r~pd~~~yI~Pqk~ 170 (329)
....+++ +|+..+.. ....--+.|||.+|. ++..+|... ||... +++.+++.+.+.... +.. ..
T Consensus 91 ~g~~~il~~~~~g~~~l~~--~~~~~~~~i~i~~p~~~~l~~Rl~~-----Rg~~~~~~i~~rl~~~~~~~~-~~~--~~ 160 (186)
T 3a00_A 91 SGKTCILDIDMQGVKSVKA--IPELNARFLFIAPPSVEDLKKRLEG-----RGTETEESINKRLSAAQAELA-YAE--TG 160 (186)
T ss_dssp TTCEEEEECCHHHHHHHHT--CGGGCCEEEEEECSCC-----------------------------------------CC
T ss_pred cCCeEEEEEcHHHHHHHHH--hcCCCeEEEEEECcCHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHH-hhc--cc
Confidence 4556777 44443331 011234569999965 666555444 45544 455567765544322 221 36
Q ss_pred CCcEEEecC
Q 048274 171 YADAVIEVL 179 (329)
Q Consensus 171 ~ADiVI~~~ 179 (329)
.+|++|.|-
T Consensus 161 ~~d~vi~nd 169 (186)
T 3a00_A 161 AHDKVIVND 169 (186)
T ss_dssp CCSEEEECS
T ss_pred CCcEEEECc
Confidence 789999874
No 73
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.04 E-value=1.2e-05 Score=73.47 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+|.|+|++|||||| |+.||+.++ ..+|++|+++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~~~~ 38 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRVQCC 38 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHHhcc
Confidence 479999999999998 777777664 678999998643
No 74
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.03 E-value=8.3e-06 Score=75.32 Aligned_cols=131 Identities=9% Similarity=-0.000 Sum_probs=68.5
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhcc-CCCCccccchhHHHHHHHHHhcCCcee
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGV-TALDPRANNFDLMYEQVKAMKDGVSVE 78 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~-~~~~Pea~d~d~L~~~L~~L~~G~~i~ 78 (329)
|..+|.|.|++|||||| ++.|++.+ .+..+|++|.|... ...+. .+. ..+.++. .....+.+.....
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~--~~~~~i~~D~~r~~-~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~~----- 69 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKN--PGFYNINRDDYRQS-IMAHE-ERDEYKYTKKK--EGIVTGMQFDTAK----- 69 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS--TTEEEECHHHHHHH-HTTSC-CCC---CCHHH--HHHHHHHHHHHHH-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhC--CCcEEecccHHHHH-hccCC-cccccccchhh--hhHHHHHHHHHHH-----
Confidence 78899999999999997 66666543 26889999977532 00000 010 0011100 0011111111110
Q ss_pred ccccccccCCCCCCcccCCCcEEEEEcccccc--chhhhcc-----C-CEEEEEECCHHHHHHHhhcccccccCCchhhH
Q 048274 79 KPIYNHVTGLLDPPELIKPPKILVIEGLHPMY--DARVREL-----L-DFSIYLDISNEVKFAWKIQRDMTERGHSLESI 150 (329)
Q Consensus 79 ~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~--~~~lr~~-----~-D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V 150 (329)
+. +. .......+|++|...-. ...+.++ + +..||+++++++.++|..+|.. +..+.+.+
T Consensus 70 -~~-------l~---~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~--~~~~~e~i 136 (301)
T 1ltq_A 70 -SI-------LY---GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVL 136 (301)
T ss_dssp -HH-------TT---SCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG--GCCCHHHH
T ss_pred -HH-------Hh---hccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC--CCCCHHHH
Confidence 00 00 00224578888866431 1123221 2 3789999999999999777753 23344555
Q ss_pred HHHHh
Q 048274 151 KASIE 155 (329)
Q Consensus 151 ~~~i~ 155 (329)
.+++.
T Consensus 137 ~~~~~ 141 (301)
T 1ltq_A 137 RSMYK 141 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 75
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.03 E-value=2e-06 Score=76.25 Aligned_cols=36 Identities=11% Similarity=-0.057 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
.+|.|.|++|||||| ++.|++.|+ ...+++|++++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~ 42 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLRA 42 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHHH
Confidence 358899999999998 777777774 678999998863
No 76
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.98 E-value=3.8e-06 Score=74.97 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=36.1
Q ss_pred CcEEEEEccccccchhhhccC-C--EEEEEEC-CHHHHHHHhhcccccccCCchhhHHHHHhhcccchhhhccccCCCCc
Q 048274 98 PKILVIEGLHPMYDARVRELL-D--FSIYLDI-SNEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYAD 173 (329)
Q Consensus 98 ~~vlIvEGl~~l~~~~lr~~~-D--~~IyVD~-~~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~AD 173 (329)
..++|++.-.... ..+++.+ + ..||+.. +.++..+|...|| +.+.+++.+++.++++...+ ...||
T Consensus 118 ~~~vild~~~~g~-~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~----~~~~~~i~~rl~~~~~~~~~-----~~~~d 187 (231)
T 3lnc_A 118 GVSTLLVIDWQGA-FKFMEMMREHVVSIFIMPPSMEELRRRLCGRR----ADDSEVVEARLKGAAFEISH-----CEAYD 187 (231)
T ss_dssp TCEEEEECCHHHH-HHHHHHSGGGEEEEEEECSCHHHHHHC------------------CHHHHHHHHTT-----GGGSS
T ss_pred CCeEEEEcCHHHH-HHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHhh-----hcCCe
Confidence 4566666411111 2344555 3 4577655 6777777666664 35778888888888776653 47899
Q ss_pred EEEecC
Q 048274 174 AVIEVL 179 (329)
Q Consensus 174 iVI~~~ 179 (329)
+||.|-
T Consensus 188 ~vI~n~ 193 (231)
T 3lnc_A 188 YVIVNE 193 (231)
T ss_dssp EEEECS
T ss_pred EEEECc
Confidence 999974
No 77
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.96 E-value=9.4e-06 Score=72.39 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
+|.|.|++|||||| ++.|++.| +..+|++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~dd~~r~ 37 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SLAHIESGGIFRE 37 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEchHHHHHH
Confidence 58999999999998 77777777 4689999998763
No 78
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.96 E-value=5e-06 Score=73.35 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|.|.|++|||||| ++.|++.+ +..+|++|++.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQISTGDMLRA 37 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeEEeHHHHHHH
Confidence 7999999999998 77777776 4778999998863
No 79
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.95 E-value=9e-06 Score=71.88 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
+|.|.|++|||||| |+.|++.|+ ..+|++|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~ 40 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLR 40 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHH
Confidence 68999999999998 777777774 78999999986
No 80
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.90 E-value=1.9e-05 Score=71.32 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=64.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC---chhhhhh-----ccCCCCccccchhHHHHHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD---RTGRKEK-----GVTALDPRANNFDLMYEQVKAMKD 73 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d---r~~~~~~-----~~~~~~Pea~d~d~L~~~L~~L~~ 73 (329)
+||.|.||+||||+| |+.|++.+ ++..|++.|..|.. ..+.... ....+-|+..-.+.+.+.|....
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~---g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~- 105 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF---HFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV- 105 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH---CCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH---CCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc-
Confidence 589999999999998 88888777 58889998887631 1111000 01122333333333333332211
Q ss_pred CCceeccccccccCCCCCCcccCCCcEEEEEccccccc-----hhhhccCCEEEEEECCHHHHHHHhhccc
Q 048274 74 GVSVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD-----ARVRELLDFSIYLDISNEVKFAWKIQRD 139 (329)
Q Consensus 74 G~~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~-----~~lr~~~D~~IyVD~~~evrl~rkI~RD 139 (329)
....-+|++|..=-.. ...-...|..|++++++++..+|-..|-
T Consensus 106 ----------------------~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 106 ----------------------DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp ----------------------TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred ----------------------ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 1123466777431110 0112346899999999999999877773
No 81
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.87 E-value=1.6e-05 Score=67.61 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+|.|+|++|||||| |+.|++.|+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 379999999999998 777777775
No 82
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.84 E-value=7.7e-06 Score=72.07 Aligned_cols=37 Identities=11% Similarity=-0.034 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc-cCC--eEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI-SDT--TTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~-~~~--v~vI~~Ddyh 39 (329)
.+|.|.|++|||||| ++.|++.|. ..+ +.+++.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 589999999999999 888888886 334 7777777764
No 83
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.82 E-value=4.6e-05 Score=66.25 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTV 32 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~v 32 (329)
.+|+|+|++|||||| ++.|++.|...+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 589999999999999 888888886554444
No 84
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.81 E-value=3.3e-05 Score=68.31 Aligned_cols=34 Identities=6% Similarity=-0.068 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.|.|.|++|||||| |+.|++.| +..+|++|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~d~li~ 41 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---GLAHLSTGDMLR 41 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CceEEehhHHHH
Confidence 58899999999998 77777777 478999999886
No 85
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.81 E-value=4.1e-06 Score=73.98 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=29.3
Q ss_pred EEEEEECC-HHHHHHHhhcccccccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 120 FSIYLDIS-NEVKFAWKIQRDMTERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 120 ~~IyVD~~-~evrl~rkI~RD~~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
+.||+.++ .++..+|...|+ ..+.+++.+++.+.+..... ...+|++|.|-
T Consensus 122 ~~i~i~~ps~~~l~~Rl~~R~----~~~~e~i~~Rl~~~~~e~~~-----~~~~d~vivN~ 173 (208)
T 3tau_A 122 IFIFLTPPDLSELKNRIIGRG----TESMEVVEERMETAKKEIEM-----MASYDYAVVND 173 (208)
T ss_dssp EEEEEECTTTTTSSCC-----------CCHHHHHHHHHHHHHHHH-----GGGSSEEEECS
T ss_pred EEEEEeCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHh-----hccCCEEEECc
Confidence 67888876 666555544442 24677788887655433222 35789998874
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.65 E-value=4e-05 Score=66.83 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCe--EEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTT--TVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v--~vI~~Ddyhr 40 (329)
.+|+|.|++|||||| ++.|+..|...+. ..++.|+++.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 589999999999999 8888888864343 4788888765
No 87
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.64 E-value=5.5e-05 Score=68.97 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCC---chhhhhh---cc--CCCCccccchhHHHHHHHHHhcCC
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLD---RTGRKEK---GV--TALDPRANNFDLMYEQVKAMKDGV 75 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~d---r~~~~~~---~~--~~~~Pea~d~d~L~~~L~~L~~G~ 75 (329)
.||.|++|||||| |+.|++.+ ++..|++|+..+.. ..+.... .+ .-+-|+..-.+.+.+.|....
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~---g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~--- 84 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF---GIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD--- 84 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---TCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG---
T ss_pred eeeECCCCCCHHHHHHHHHHHh---CCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc---
Confidence 7999999999998 77777777 58899999988631 1111100 00 112233222222322222110
Q ss_pred ceeccccccccCCCCCCcccCCCcEEEEEccccccc--hhhh---ccCCEEEEEECCHHHHHHHhhccc
Q 048274 76 SVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD--ARVR---ELLDFSIYLDISNEVKFAWKIQRD 139 (329)
Q Consensus 76 ~i~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~--~~lr---~~~D~~IyVD~~~evrl~rkI~RD 139 (329)
...-+|++|..--.. +.+. ...|..||+++++++.++|...|-
T Consensus 85 ---------------------~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 85 ---------------------CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp ---------------------GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred ---------------------cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 011246677421111 1122 247999999999999999988885
No 88
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.62 E-value=0.00032 Score=63.15 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
.+|.|.|++|||||| ++.|++.|.. +..++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 589999999999999 8889999876 5555544
No 89
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.58 E-value=4e-05 Score=68.56 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.|.|.|++|||||| |+.|++.|+ +.+|++|++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~ 52 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLR 52 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHH
Confidence 68899999999998 777777774 78999999875
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.56 E-value=5.3e-05 Score=78.40 Aligned_cols=34 Identities=12% Similarity=0.008 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
.+|.|+|.+|||||| |+.|++.|.+.+..++.+|
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 579999999999999 8889888865455555555
No 91
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.53 E-value=0.00011 Score=74.34 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
..+|.++|.+|||||| |+.|++.|+-. .+.+++.|++-
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 4689999999999999 88888888533 57789999954
No 92
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.46 E-value=9.8e-06 Score=70.61 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
+|+|.|++|||||| ++.|++.|... .+.++..+.|+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~ 40 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYG 40 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCC
Confidence 79999999999999 88888888643 34455555543
No 93
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.45 E-value=0.00021 Score=72.74 Aligned_cols=36 Identities=11% Similarity=-0.086 Sum_probs=29.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+|.++|.+|||||| |+.|++.|... .+.+++.|.+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 579999999999999 88888887643 4677888765
No 94
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.45 E-value=1.4e-05 Score=73.34 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=38.6
Q ss_pred ccCCEEEEEECCHHHHHHHhhcccc-cccCCchhhHHHHHhhcccchhhhccccCCCCcEEEecC
Q 048274 116 ELLDFSIYLDISNEVKFAWKIQRDM-TERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVL 179 (329)
Q Consensus 116 ~~~D~~IyVD~~~evrl~rkI~RD~-~eRG~s~E~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~ 179 (329)
..+|..|.+|++.+..++|-.+|+. ..+ .+.+.. ..+..++|.... ..+.||+||+|-
T Consensus 166 ~~~d~VvVvdv~~~~qieRl~~rg~~~v~-i~~~~~-~~i~~Q~se~~~----k~~~AD~VI~N~ 224 (241)
T 1dek_A 166 SGYDYYIVPDTRQDHEMDAARAMGATVIH-VVRPGQ-KSNDTHITEAGL----PIRDGDLVITND 224 (241)
T ss_dssp SSCSEEEECCCCSHHHHHHHHHTTCEEEE-EECTTC-CCSCCSGGGSCC----CCCTTCEEEECC
T ss_pred ccCCEEEEEcCCcHHHHHHHHHCCCceEE-EECccc-chhhcCCCcccc----cccCCCEEEECC
Confidence 4579999999999999999887752 000 111111 345566766521 258999999985
No 95
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.43 E-value=0.00023 Score=60.92 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|.|.|.+|||||| ++.++..|... .+.+++.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 589999999999999 88888888753 36778888763
No 96
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=0.00013 Score=64.95 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
+|.|.||+||||+| |+.|++.+ ++..|++.|..|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GFVHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CCeEEcHHHHHHH
Confidence 46789999999998 88888777 5889999888763
No 97
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=7.2e-06 Score=73.74 Aligned_cols=46 Identities=26% Similarity=0.192 Sum_probs=30.7
Q ss_pred cCCEEEEEECCHHHHHHHhhcccccccCCchhhH--HHHHhhcccchhhhccc
Q 048274 117 LLDFSIYLDISNEVKFAWKIQRDMTERGHSLESI--KASIEARKPDFDAYIDP 167 (329)
Q Consensus 117 ~~D~~IyVD~~~evrl~rkI~RD~~eRG~s~E~V--~~~i~~r~pd~~~yI~P 167 (329)
..|+.||+++++++.++|..+| |++.+.. .+.+.+....|..+..+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R-----~r~~e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQR-----AREEEKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHS-----CCTTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHHHHhc-----CCcccccCCHHHHHHHHHHHHHHHhh
Confidence 5799999999999999986555 4433332 23344555667766554
No 98
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.13 E-value=0.00081 Score=64.60 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.|+|++|||||| +..||+.| +..+|++|++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC---CCcEEccccccc
Confidence 589999999999996 66666655 478999999943
No 99
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.09 E-value=0.00092 Score=65.40 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=61.8
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc-CCeEEEEccceecCCchhhhhhccCCCCccccchhHHHHH-HHHHhcCCceecc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS-DTTTVICLDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQ-VKAMKDGVSVEKP 80 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~-~~v~vI~~Ddyhr~dr~~~~~~~~~~~~Pea~d~d~L~~~-L~~L~~G~~i~~P 80 (329)
.+|.|+|++|||||| +++.|.+ .+..+|+.|++.. +..+.+. ...+..|..
T Consensus 259 ~lIil~G~pGSGKST---la~~L~~~~~~~~i~~D~~~~--------------------~~~~~~~~~~~l~~g~~---- 311 (416)
T 3zvl_A 259 EVVVAVGFPGAGKST---FIQEHLVSAGYVHVNRDTLGS--------------------WQRCVSSCQAALRQGKR---- 311 (416)
T ss_dssp CEEEEESCTTSSHHH---HHHHHTGGGTCEECCGGGSCS--------------------HHHHHHHHHHHHHTTCC----
T ss_pred EEEEEECCCCCCHHH---HHHHHHHhcCcEEEccchHHH--------------------HHHHHHHHHHHHhcCCc----
Confidence 589999999999995 4444433 2688899998731 1223322 233344432
Q ss_pred ccccccCCCCCCcccCCCcEEEEEccccccc--hhhh------ccCCEEEEEECCHHHHHHHhhcccccc--cCCchhhH
Q 048274 81 IYNHVTGLLDPPELIKPPKILVIEGLHPMYD--ARVR------ELLDFSIYLDISNEVKFAWKIQRDMTE--RGHSLESI 150 (329)
Q Consensus 81 ~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~--~~lr------~~~D~~IyVD~~~evrl~rkI~RD~~e--RG~s~E~V 150 (329)
+|+++...-.. ..+. ..--..||++++.++.++|..+|.... +....+++
T Consensus 312 --------------------vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~ 371 (416)
T 3zvl_A 312 --------------------VVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMV 371 (416)
T ss_dssp --------------------EEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHH
T ss_pred --------------------EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHH
Confidence 34555432211 0111 112267999999999999988886422 12335566
Q ss_pred HHHHh
Q 048274 151 KASIE 155 (329)
Q Consensus 151 ~~~i~ 155 (329)
+.++.
T Consensus 372 ~~~~~ 376 (416)
T 3zvl_A 372 MFSYR 376 (416)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 100
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.02 E-value=0.00085 Score=68.60 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddyhr 40 (329)
.+|.|+|.+|||||| |+.|++.|.. ..+.+++.|.+.+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 589999999999999 8889988874 4477888887543
No 101
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.02 E-value=0.00031 Score=67.09 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=31.7
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecC
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
|..+|.|+|++|||||| +..||+.+ +..+|++|++..+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds~qvy 42 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADAL---PCELISVDSALIY 42 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS---CEEEEEECTTTTB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCcEEeccchhhh
Confidence 66789999999999997 66777766 4789999999654
No 102
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.98 E-value=0.00053 Score=60.84 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.7
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
|...|.|-|+.|||||| ++.|++.|.+
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC
Confidence 77889999999999999 8889999964
No 103
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.96 E-value=0.00027 Score=60.59 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=29.7
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
|..+++|.|++|||||| ++.++..+. +...++.|+++.
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~~ 39 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIINH 39 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchhh
Confidence 67899999999999997 666665332 457889998865
No 104
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.91 E-value=0.00039 Score=70.88 Aligned_cols=37 Identities=11% Similarity=-0.069 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC---CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD---TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~---~v~vI~~Ddyh 39 (329)
.+|+|+|.+|||||| ++.|+..|... .+..+.+|++.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 489999999999999 88888888743 26678888875
No 105
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.86 E-value=0.00065 Score=64.80 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=29.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce--ecC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY--HSL 41 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy--hr~ 41 (329)
..+|.|+||+|||||| +..|++.+ +..+|++|++ |+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL---NGEVISGDSMQVYRG 42 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT---TEEEEECCGGGGBTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC---ccceeecCcccceee
Confidence 4689999999999997 66666665 4789999998 654
No 106
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.86 E-value=0.00069 Score=59.51 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=64.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC----Cchhhhh--hccCCCCccccchhHHHHHHHHHhcCCc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL----DRTGRKE--KGVTALDPRANNFDLMYEQVKAMKDGVS 76 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~----dr~~~~~--~~~~~~~Pea~d~d~L~~~L~~L~~G~~ 76 (329)
|.|.|+||||||||| |++.|.+.. -|.|... .|+++.. .|..++ |-.-.+.-....+|+=
T Consensus 2 RpIVi~GPSG~GK~T---l~~~L~~~~-----~~~~~~svs~TTR~pR~gE~~G~dY~------Fvs~~eF~~~i~~g~f 67 (186)
T 1ex7_A 2 RPIVISGPSGTGKST---LLKKLFAEY-----PDSFGFSVSSTTRTPRAGEVNGKDYN------FVSVDEFKSMIKNNEF 67 (186)
T ss_dssp CCEEEECCTTSSHHH---HHHHHHHHC-----TTTEEECCCEECSCCCTTCCBTTTBE------ECCHHHHHHHHHTTCE
T ss_pred CEEEEECCCCCCHHH---HHHHHHHhC-----CCCeEEEEEEeccCCCCCCcCCceeE------eecHHHHHHHHHcCCE
Confidence 457899999999995 555443210 0123221 3444421 133221 1111122223344665
Q ss_pred eecccc-ccccCCCCCC--cccCCCcEEEEEccccccchhhhccC---CEEEEEECCHHHHHHHhhcccccccCCc-hhh
Q 048274 77 VEKPIY-NHVTGLLDPP--ELIKPPKILVIEGLHPMYDARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGHS-LES 149 (329)
Q Consensus 77 i~~P~Y-d~~tg~~~~~--~~i~p~~vlIvEGl~~l~~~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~s-~E~ 149 (329)
+++-.| ++--|+...+ ..+.....+|+++-.-.. ..++..+ -+.||+.++..-.|++|+. .||.. .++
T Consensus 68 lE~~~~~g~~YGt~~~~v~~~l~~g~~vil~id~~g~-~~~k~~~~~~~~~Ifi~pps~e~L~~RL~----~Rg~e~~e~ 142 (186)
T 1ex7_A 68 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLE----GRGTETEES 142 (186)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHTSEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCHHHHHHHHH----HHCCSCHHH
T ss_pred EEEEEEcCceeeeecceeeehhhCCCEEEecCCHHHH-HHHHHhcccCceEEEEeCCCHHHHHHHHH----hcCCCCHHH
Confidence 554433 3333332111 122335567777533332 2355543 3678998875555555553 26754 455
Q ss_pred HHHHHhh
Q 048274 150 IKASIEA 156 (329)
Q Consensus 150 V~~~i~~ 156 (329)
+.+++.+
T Consensus 143 i~~Rl~~ 149 (186)
T 1ex7_A 143 INKRLSA 149 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 107
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.81 E-value=0.0021 Score=63.64 Aligned_cols=36 Identities=14% Similarity=-0.036 Sum_probs=26.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
..+|.+.|.+|||||| ++.|++.|... .+.+++.|+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 4589999999999998 88888877533 344555555
No 108
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.72 E-value=0.00087 Score=65.89 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=30.3
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc--eecC
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD--YHSL 41 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd--yhr~ 41 (329)
..+|.|+||+|||||| +..|+..+. ..+|++|+ +|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~QvYr~ 41 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSMQVYKD 41 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTTTTBSS
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC---CeEeecCccceecc
Confidence 3689999999999998 777777775 56899999 5664
No 109
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.70 E-value=0.001 Score=60.47 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCe
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTT 30 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v 30 (329)
.+|.|.|++|||||| ++.|++.|...+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 479999999999999 8889998876543
No 110
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.67 E-value=0.0013 Score=58.65 Aligned_cols=152 Identities=15% Similarity=0.045 Sum_probs=74.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceecCCchhhhhhccC--CCCccccchh----HHHHHHHHHhc-
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT--ALDPRANNFD----LMYEQVKAMKD- 73 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr~dr~~~~~~~~~--~~~Pea~d~d----~L~~~L~~L~~- 73 (329)
+.||+|+|-.||||+| |..+.+.++..++.++++=|=-|. ...+..+.+ .+-.+.-..+ .|...-..+++
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~--~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE--QYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH--HHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH--HHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 4799999999999997 555555555446777777663331 111111221 1000000001 12211112221
Q ss_pred CCce-eccccccccCCCCCCcccCCCcEEEEEccccccc-hhhhccC---CEEEEEECCHHHHHHHhhcccccccCCchh
Q 048274 74 GVSV-EKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYD-ARVRELL---DFSIYLDISNEVKFAWKIQRDMTERGHSLE 148 (329)
Q Consensus 74 G~~i-~~P~Yd~~tg~~~~~~~i~p~~vlIvEGl~~l~~-~~lr~~~---D~~IyVD~~~evrl~rkI~RD~~eRG~s~E 148 (329)
+..+ ..... ..+ ..+++||+|+--..+ +.+++.+ =..|+|.+++++|++|...+. +|.+
T Consensus 89 d~~~~~~~~~----------~~~-~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~---~~~D-- 152 (202)
T 3ch4_B 89 DPGFFCRKIV----------EGI-SQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT---PGVD-- 152 (202)
T ss_dssp CTTTTHHHHS----------BTC-CCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCC---TTTT--
T ss_pred CchHHHHHHH----------Hhc-CCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcc---cccc--
Confidence 1110 00000 011 346999999886643 1244444 236999999999999843221 1221
Q ss_pred hHHHHHhhcccchhhhccccCCCCcEEEecCCC
Q 048274 149 SIKASIEARKPDFDAYIDPQKQYADAVIEVLPT 181 (329)
Q Consensus 149 ~V~~~i~~r~pd~~~yI~Pqk~~ADiVI~~~p~ 181 (329)
+.. .+--+.+. ..+|++|.|--+
T Consensus 153 d~e---------sE~gL~~~-~~~D~vI~Ndgt 175 (202)
T 3ch4_B 153 DAE---------SECGLDNF-GDFDWVIENHGV 175 (202)
T ss_dssp TSH---------HHHTTTTC-CCCSEEEEECSC
T ss_pred ccc---------cccCCCCC-CcCCEEEEeCCC
Confidence 111 12223443 679999998443
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.65 E-value=0.00061 Score=58.11 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|+|.|++|||||| ++.++..+ ..+...++.|++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLWG 47 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccchhh
Confidence 589999999999997 66666553 23566788888764
No 112
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.00094 Score=62.08 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=30.3
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
..+|.|+|++|||||| ++.|++.+. .+...|+.|.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFKQ 71 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhHH
Confidence 3589999999999998 777776663 2678899998864
No 113
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.59 E-value=0.00047 Score=60.73 Aligned_cols=31 Identities=13% Similarity=-0.059 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEE
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVIC 34 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~ 34 (329)
.|.|-|+.|||||| ++.|++.|.+.+..++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999 89999999877655554
No 114
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.51 E-value=0.0013 Score=62.53 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=29.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
|.++|.|+||+|||||| +..|++.+ +..+|+.|++-
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL---PVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC---CCcEEeccccc
Confidence 34689999999999997 66677666 47799999963
No 115
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.51 E-value=0.0002 Score=64.82 Aligned_cols=25 Identities=8% Similarity=-0.071 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+|.|.|++|||||| ++.|++.|..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 479999999999999 8889998876
No 116
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.48 E-value=0.0013 Score=59.60 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|.|+|++|||||| ++.|++.+. ..+.+++.|.+-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFRS 70 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHHH
Confidence 579999999999998 777887775 3577889998754
No 117
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.32 E-value=0.0011 Score=57.05 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
.+|+|+|++|||||| ++.|++.|. +..++..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~--g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIP--ANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSC--GGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHC--CCceEEEe
Confidence 489999999999998 777888773 23345544
No 118
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0021 Score=54.91 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=19.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.++++|+|++|||||| ++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999997 55565554
No 119
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.77 E-value=0.0044 Score=53.62 Aligned_cols=35 Identities=6% Similarity=-0.133 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++++|+|++|||||| +..++..|.. .++.+|..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 479999999999999 7778888764 3688888764
No 120
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.67 E-value=0.0052 Score=53.14 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=27.4
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLD 36 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~D 36 (329)
|..+++|+|++|||||| .+.+...|... .+.+|..|
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 45689999999999998 77777776543 46666655
No 121
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.67 E-value=0.0021 Score=55.47 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=26.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
|-.+++|.|++|||||| ++.++..+... ++..|..|.-
T Consensus 1 m~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 55689999999999998 77777777654 2666776653
No 122
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.52 E-value=0.0065 Score=57.23 Aligned_cols=36 Identities=8% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+|+|+|++|||||| +..+|..+... .+.++..|-|
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 589999999999999 88888888643 6888998865
No 123
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.36 E-value=0.0085 Score=59.46 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|.++|++|||||| +..||..|... +|.++++|-|.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 689999999999999 78888888654 79999999764
No 124
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.22 E-value=0.008 Score=59.46 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
++|+++|++|||||| +..||..|... +|.++++|-|
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 689999999999999 77888888643 7999999975
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.14 E-value=0.019 Score=47.97 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCC--eEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDT--TTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~--v~vI~~Ddyh 39 (329)
..++|.|++|||||| ++.+++.+...+ +..+...++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 368999999999998 777777775444 5555555543
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.03 E-value=0.0072 Score=54.03 Aligned_cols=35 Identities=3% Similarity=-0.029 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
.+|+|.|++|||||| ++.+++.++ ...++.++...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg---~~~~~~G~i~~ 63 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG---LQHLSSGHFLR 63 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC---CCCEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHH
Confidence 379999999999997 677776664 33456666554
No 127
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.03 E-value=0.01 Score=55.69 Aligned_cols=37 Identities=11% Similarity=-0.036 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|+|.|++|||||| .+.++..+... .+.+...|-|-
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 389999999999999 77888887653 56666666543
No 128
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.96 E-value=0.011 Score=55.25 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=30.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddy 38 (329)
.+|+|.|++|||||| +..+|..+.. ..|.++.+|-|
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 489999999999999 7888888863 36999999986
No 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.93 E-value=0.012 Score=55.23 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+++|.|++|||||| .+.++..+... .+.+...|-|
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 489999999999999 78888888643 4666666654
No 130
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.90 E-value=0.014 Score=51.19 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHH--Hh-cccCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDS--NT-LISDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la--~~-L~~~~v~vI~~Dd 37 (329)
.+++|.|++|||||| ++.++ .. ....++.++..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 379999999999998 66666 33 2234677776654
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.87 E-value=0.0086 Score=52.17 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999998 677777664
No 132
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.87 E-value=0.013 Score=55.33 Aligned_cols=36 Identities=8% Similarity=0.031 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
.+|+|+|++|||||| +..+|..+.. ..+.++.+|-|
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 589999999999999 7788888864 36889998864
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.85 E-value=0.013 Score=55.62 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|+|.|++|||||| .+.++..+... .+.+...|-|.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 489999999999999 78888888654 57777777654
No 134
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.69 E-value=0.017 Score=54.26 Aligned_cols=34 Identities=15% Similarity=-0.102 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
.+++|+|.+|||||| .+.+.......+++||.-|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 389999999999997 5555555444567777655
No 135
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.68 E-value=0.0077 Score=52.40 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
++++|.|++|||||| .+.++..+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999997 55555544
No 136
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.48 E-value=0.016 Score=51.57 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
.+|.|.|++|||||| ++.|++.|...+..++.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 579999999999999 888999998765555543
No 137
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.46 E-value=0.018 Score=55.55 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+|+|.|++|||||| .+.++..+... .+.+...|-|
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 489999999999999 78888888643 5666666654
No 138
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.46 E-value=0.03 Score=52.29 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=30.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
.+|+++|++|+|||| +..+|..+.. ..+.+++.|-|
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 589999999999999 7778877753 37899998875
No 139
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.42 E-value=0.015 Score=57.28 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
++|+|+|++|||||| +..|+..+.. .+|.++++|-|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 479999999999999 7778887753 479999999864
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.37 E-value=0.01 Score=50.21 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
..++|.|++|||||| ++.+++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999998 777888775
No 141
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.31 E-value=0.02 Score=52.37 Aligned_cols=35 Identities=11% Similarity=-0.034 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
.+++|+|++|||||| .+.++..+.. .+-.++..|+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 489999999999998 6777777653 3444444444
No 142
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.28 E-value=0.03 Score=50.04 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccceecC
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSL 41 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddyhr~ 41 (329)
+.|.|+|++||||| ++|..|...+-.+|+.|....+
T Consensus 35 ~~ilI~GpsGsGKS---tLA~~La~~g~~iIsdDs~~v~ 70 (205)
T 2qmh_A 35 LGVLITGDSGVGKS---ETALELVQRGHRLIADDRVDVY 70 (205)
T ss_dssp EEEEEECCCTTTTH---HHHHHHHTTTCEEEESSEEEEE
T ss_pred EEEEEECCCCCCHH---HHHHHHHHhCCeEEecchhhee
Confidence 46899999999999 5666665544478888887554
No 143
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.21 E-value=0.015 Score=51.74 Aligned_cols=28 Identities=14% Similarity=-0.044 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCe
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTT 30 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v 30 (329)
.+|.+.|+.|||||| ++.|++.|...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999 8899999976654
No 144
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.18 E-value=0.013 Score=51.89 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.++..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999998 66677666
No 145
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.18 E-value=0.013 Score=52.75 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999996 444554443
No 146
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.17 E-value=0.02 Score=57.57 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=29.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
.+|+|.|++|||||| .+.|+..+... .+.+...|.|-
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 589999999999999 77888887643 46666677653
No 147
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.11 E-value=0.017 Score=49.75 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++|.|++|||||| .+.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 58999999999998 677777764
No 148
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.08 E-value=0.013 Score=51.24 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyhr 40 (329)
+++|.|++|||||| .+.++..+...+ |..|.|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G---i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG---VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT---CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC---EEEcCEec
Confidence 68999999999999 778888876334 45566543
No 149
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.05 E-value=0.03 Score=53.27 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
.++|+|+|.+|+|||| ++.++..+.. .++.++..|-
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 3589999999999998 7777777643 4799999984
No 150
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.04 E-value=0.023 Score=48.87 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
.+++|.|++|||||| +..++. ....++..++++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 479999999999998 666666 3344677777765
No 151
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.97 E-value=0.019 Score=51.28 Aligned_cols=24 Identities=13% Similarity=-0.150 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 489999999999997 566666554
No 152
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.95 E-value=0.03 Score=55.16 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc---CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS---DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~---~~v~vI~~Ddyh 39 (329)
++|.++|..|||||| +..||..|.. .+|.+|++|-|-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 689999999999999 7778888763 479999999764
No 153
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.91 E-value=0.018 Score=52.97 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Dd 37 (329)
.+++|.|++|||||| .+.++..+... +-..+..-+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 379999999999996 55555554332 444444433
No 154
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.87 E-value=0.037 Score=49.20 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=28.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc-cCCeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI-SDTTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~-~~~v~vI~~Dd 37 (329)
+.++.+.|..|||||| +..++..|. +.++.+|++|-
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4588999999999998 777776665 33799999885
No 155
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.83 E-value=0.023 Score=57.29 Aligned_cols=35 Identities=3% Similarity=-0.116 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Dd 37 (329)
.+|-++|.+|||||| |+.|++.|.. ..+..+++|+
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 478999999999999 9999999974 2467888887
No 156
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.74 E-value=0.033 Score=56.07 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
++|+|+|..|||||| ++.|+..|.. .++.+++.|-|.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 489999999999999 7778877763 479999998764
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.71 E-value=0.035 Score=51.66 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
.+|+|+|++|||||| +..+|..+.. ..+.++..|-+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 589999999999999 7788888764 36888888864
No 158
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.70 E-value=0.022 Score=54.68 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+|+|+|++|||||| .+.+++.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 489999999999998 6667777764
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.66 E-value=0.022 Score=50.39 Aligned_cols=24 Identities=13% Similarity=0.064 Sum_probs=18.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.++|+|+||+|||||| .+.|++.+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999996 45555443
No 160
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.63 E-value=0.024 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=15.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~ 24 (329)
+|.|+||+|||||| |..++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 47899999999996 5545433
No 161
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.59 E-value=0.028 Score=48.48 Aligned_cols=35 Identities=6% Similarity=-0.029 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.+++|.|++|||||| +..++..+. +..+.+++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 479999999999998 666665543 23677777665
No 162
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.59 E-value=0.019 Score=48.62 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Ddy 38 (329)
.+++|.|++|||||| +++.+.. +..+++.|.+
T Consensus 10 ei~~l~G~nGsGKST---l~~~~~~-~~~~~~~d~~ 41 (171)
T 4gp7_A 10 SLVVLIGSSGSGKST---FAKKHFK-PTEVISSDFC 41 (171)
T ss_dssp EEEEEECCTTSCHHH---HHHHHSC-GGGEEEHHHH
T ss_pred EEEEEECCCCCCHHH---HHHHHcc-CCeEEccHHH
Confidence 489999999999994 5555432 3445666643
No 163
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.56 E-value=0.04 Score=54.31 Aligned_cols=36 Identities=8% Similarity=-0.036 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
.+|+++|++|||||| +..+|..+... .|.++++|-|
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 589999999999999 78888888643 6899998754
No 164
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.32 E-value=0.028 Score=47.63 Aligned_cols=23 Identities=4% Similarity=-0.071 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|+.|||||| .+.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999998 77888887
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.20 E-value=0.028 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| ++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999998 66666643
No 166
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.19 E-value=0.021 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=19.0
Q ss_pred cCCEEEEEECCHHHHHHHhhcc
Q 048274 117 LLDFSIYLDISNEVKFAWKIQR 138 (329)
Q Consensus 117 ~~D~~IyVD~~~evrl~rkI~R 138 (329)
..|+.||+++++++.++|..+|
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R 195 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLR 195 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhc
Confidence 4699999999999999986655
No 167
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.08 E-value=0.05 Score=48.12 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~ 24 (329)
+++|.|++|||||| .+.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 79999999999998 6666666
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.03 E-value=0.046 Score=47.74 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHh--cc------cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNT--LI------SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~--L~------~~~v~vI~~Dd 37 (329)
.+++|.|++|||||| +..++.. +. ..++..|++++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 479999999999998 6666663 32 23577777665
No 169
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.00 E-value=0.05 Score=51.77 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceec
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHS 40 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr 40 (329)
.+|+|+|.+|||||| .+.++..+.. ..+.|+..|-...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 589999999999997 6666665543 3788998886643
No 170
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.96 E-value=0.061 Score=46.41 Aligned_cols=35 Identities=6% Similarity=-0.088 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc-CCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS-DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~-~~v~vI~~Dd 37 (329)
++|+|.|.+|||||| .+.++..+.. ..+.+|..|-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 579999999999998 6666665533 3678887664
No 171
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.91 E-value=0.032 Score=48.84 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
|+ |+|+|-.|+|||| +..+|..|.. .+|.+|++|-
T Consensus 1 mk--I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MK--LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CE--EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CE--EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 55 5668999999999 7778888865 3799999997
No 172
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.83 E-value=0.031 Score=50.57 Aligned_cols=24 Identities=4% Similarity=-0.075 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 78999999999997 5656665543
No 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.82 E-value=0.029 Score=49.96 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999996 555555443
No 174
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.79 E-value=0.04 Score=53.01 Aligned_cols=25 Identities=12% Similarity=-0.052 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+|+|+|++|||||| .+.+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 479999999999999 6777777754
No 175
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.76 E-value=0.035 Score=50.00 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
.+|.|.|++|||||| ++.|++.|...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999 88899988654
No 176
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.75 E-value=0.043 Score=53.84 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
-+|+|+|++|||||| .+.+++.+...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 489999999999998 66777777543
No 177
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.74 E-value=0.062 Score=50.93 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
.+++|.|++|||||| .+.++..+.. ..+.++..|-.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 489999999999998 6666666643 36777776654
No 178
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.63 E-value=0.028 Score=51.35 Aligned_cols=23 Identities=4% Similarity=-0.114 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 79999999999996 555555443
No 179
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.57 E-value=0.034 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 79999999999996 454554443
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.56 E-value=0.058 Score=46.58 Aligned_cols=36 Identities=8% Similarity=-0.092 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
..+.|.|++|+|||| ++.+++.+... .+..++++++
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 357899999999998 77787777643 4555555443
No 181
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.55 E-value=0.05 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999996 454555443
No 182
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.53 E-value=0.036 Score=50.42 Aligned_cols=23 Identities=4% Similarity=-0.078 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999996 555555543
No 183
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.51 E-value=0.03 Score=51.21 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999996 555555544
No 184
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.44 E-value=0.044 Score=52.41 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~ 34 (329)
.+++|+|++|||||| .+.+++.+... +...|+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 479999999999997 66666666432 444443
No 185
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.36 E-value=0.046 Score=52.88 Aligned_cols=37 Identities=5% Similarity=-0.040 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddyhr 40 (329)
++||.|++|||||| .+.++..+... +-..+..-+...
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~ 94 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 94 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 79999999999997 55555555432 333444444443
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.33 E-value=0.066 Score=46.73 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.++.|.|++|||||| +..++..+. ..++..++++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 478999999999998 555544332 34788888775
No 187
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.33 E-value=0.042 Score=52.25 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=19.8
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
...++|.|++|||||| ++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999997 666666654
No 188
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.27 E-value=0.07 Score=48.58 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=29.6
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
| ++|+|+|-.|+|||| |.-||..|.. .+|.+|++|-.
T Consensus 2 M-kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 M-RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp C-EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred c-eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5 467778999999999 7778877754 47999999964
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.27 E-value=0.12 Score=49.57 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
.++.|.|++|||||| +..++..+.. ..|..|++..-
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 589999999999998 6666665543 25777776643
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.22 E-value=0.067 Score=50.54 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEcccee
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDDYH 39 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Ddyh 39 (329)
.+|+|+|.+|+|||| .+.++..+. +..+.++..|-+.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 589999999999998 677776664 3468888888654
No 191
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.19 E-value=0.059 Score=45.88 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=26.8
Q ss_pred CcEEEEEE-cCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 1 MRRLTSVF-GGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~-GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
|+ +|+|+ +-.|+|||| +..+|..|.. .+|.+|++|.
T Consensus 1 M~-vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 1 MK-VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp CE-EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred Ce-EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 55 45565 556799999 7777777764 4799999993
No 192
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.16 E-value=0.045 Score=55.03 Aligned_cols=32 Identities=19% Similarity=-0.015 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~ 34 (329)
.+++|+|++|||||| .+.++..+... +...|+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 368999999999998 66666666543 444443
No 193
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.14 E-value=0.067 Score=48.90 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC---CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD---TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~---~v~vI~~Dd 37 (329)
.+++|.|++|||||| +..++..+... .+.+++++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 379999999999998 77677666532 466777653
No 194
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.09 E-value=0.069 Score=43.93 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+.|.|++|+|||+ ++.+++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999998 7777777743
No 195
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.08 E-value=0.042 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999996 555555544
No 196
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.05 E-value=0.073 Score=49.87 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=31.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
|++|+-.+|-.|+|||| |..+|..|.. .+|.+|++|--
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 67888899999999999 6667777754 47999999973
No 197
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.04 E-value=0.09 Score=45.91 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=29.5
Q ss_pred CcEEEEEEcC-CCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVFGG-AAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~Gg-sgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
|.++|+|+++ .|+|||| +..+|..|.. .+|.+|++|-.
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 6677888765 5799999 7778888764 47999999863
No 198
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.01 E-value=0.059 Score=47.96 Aligned_cols=31 Identities=3% Similarity=-0.148 Sum_probs=22.3
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
+.|.|++|||||| ++.+++.+. .+...+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~ 83 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGS 83 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHH
Confidence 7899999999998 777777765 234344433
No 199
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.01 E-value=0.044 Score=49.34 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999996 555555443
No 200
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.00 E-value=0.038 Score=50.75 Aligned_cols=23 Identities=9% Similarity=-0.177 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 79999999999996 555555543
No 201
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.99 E-value=0.079 Score=49.83 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
.+||+|+|=.|.|||| +.-||..|.. .+|.+|.+|-.
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999 6667777764 47999999954
No 202
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.95 E-value=0.049 Score=51.27 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 379999999999998 77777777
No 203
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.93 E-value=0.086 Score=47.15 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=29.1
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
=++|+|+|-.|+|||| +.-+|..|.. .+|.+|++|-.
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 0467778999999999 7778888864 37999999953
No 204
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.92 E-value=0.047 Score=48.82 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999996 555555543
No 205
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.88 E-value=0.081 Score=46.81 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=29.0
Q ss_pred CcEEEEEEcCC-CCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVFGGA-AEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~Ggs-gSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
|-++|+|+++. |+|||| +..+|..|.. .+|.+|++|-.
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 67788886654 699999 7778877764 47999999974
No 206
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.81 E-value=0.05 Score=51.46 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD-TTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~ 34 (329)
.+++|+|++|||||| .+.++..+... +...|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 478999999999997 55555555432 444443
No 207
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.71 E-value=1.4 Score=40.48 Aligned_cols=33 Identities=12% Similarity=-0.095 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
-+.|.|++|+|||+ |+.+++.+.. .+..+.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~~~ 90 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSA-NIKTTAAPM 90 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCC-CeEEecchh
Confidence 47899999999998 7777777654 344444433
No 208
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.64 E-value=0.094 Score=47.61 Aligned_cols=24 Identities=0% Similarity=-0.083 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| +..++..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999998 666665443
No 209
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.59 E-value=0.091 Score=48.23 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++|+|+|-.|+|||| +.-||..|.. .+|.+|++|-
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 578888999999999 7777777764 4799999996
No 210
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.59 E-value=0.045 Score=50.66 Aligned_cols=23 Identities=9% Similarity=-0.217 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999996 555555554
No 211
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.57 E-value=0.044 Score=49.87 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555555554
No 212
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.56 E-value=0.031 Score=52.57 Aligned_cols=22 Identities=5% Similarity=-0.168 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 79999999999996 44444444
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.43 E-value=0.062 Score=49.34 Aligned_cols=25 Identities=16% Similarity=-0.047 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
..++|.|++|||||| .+.++..+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 579999999999998 7777776643
No 214
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.35 E-value=0.11 Score=46.17 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=28.2
Q ss_pred CcEEEEEE-cCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVF-GGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~-GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
|.++|+|+ +-.|+|||| +..+|..|.. .+|.+|++|-.
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 65677775 556799999 7778877764 47999999974
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.27 E-value=0.097 Score=46.61 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.|.|++|+|||| ++.+++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 37899999999998 777877764
No 216
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.25 E-value=0.076 Score=43.77 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+.|.|++|+|||+ ++.+++.+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999998 7778877754
No 217
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.18 E-value=0.12 Score=49.18 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=31.3
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
|++|+-.+|-.|+|||| |..+|..|.. .+|.+|++|--+
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAH 66 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 57788888999999999 6667777653 479999999743
No 218
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.04 E-value=0.084 Score=48.40 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999997 66666666
No 219
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.00 E-value=0.097 Score=47.93 Aligned_cols=33 Identities=6% Similarity=-0.168 Sum_probs=23.4
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
++|.|++|||||| ++.+++.+.. +...+...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHH
Confidence 7899999999998 7777777653 3344444343
No 220
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.95 E-value=0.078 Score=51.49 Aligned_cols=24 Identities=4% Similarity=-0.187 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p 55 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETI 55 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCC
Confidence 78999999999997 5556665543
No 221
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.93 E-value=0.11 Score=46.31 Aligned_cols=25 Identities=16% Similarity=-0.025 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+|.+.|++|||||| ++.+++.|..
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 489999999999999 8889999876
No 222
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.88 E-value=0.094 Score=47.20 Aligned_cols=35 Identities=6% Similarity=-0.109 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
-+.|.|++|+|||+ |+.+++.+...-+.+.+.|++
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM 101 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHh
Confidence 57899999999998 777887765433444444433
No 223
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.84 E-value=0.091 Score=47.59 Aligned_cols=22 Identities=5% Similarity=-0.055 Sum_probs=18.9
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
++|.|++|||||| ++.+++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 7899999999998 777777765
No 224
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.78 E-value=0.069 Score=51.47 Aligned_cols=24 Identities=4% Similarity=-0.148 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 78999999999997 5556665543
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.63 E-value=0.095 Score=44.74 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
.-+.|.|++|+|||+ +..+++.+... .+..++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 468899999999998 77777777543 344455443
No 226
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.50 E-value=0.15 Score=44.12 Aligned_cols=34 Identities=12% Similarity=-0.055 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc-cCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI-SDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~-~~~v~vI~~D 36 (329)
++|.|.|.+|||||| .+.++..+. ...+.+|..|
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 578999999999998 555555543 3367777755
No 227
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.48 E-value=0.085 Score=51.07 Aligned_cols=24 Identities=8% Similarity=-0.208 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+|+|.|++|||||| ++.+++.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 589999999999998 777776654
No 228
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.38 E-value=0.08 Score=51.50 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 79999999999997 566666554
No 229
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.30 E-value=0.12 Score=52.59 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.++..+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 379999999999996 44444444
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.26 E-value=0.093 Score=47.13 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999996 44455444
No 231
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.16 E-value=0.14 Score=47.83 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLD 36 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~D 36 (329)
.+.|.|++|+|||| ++.+++.+... +..++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 68999999999998 77788887654 34455444
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.14 E-value=0.1 Score=47.41 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddy 38 (329)
..+.|.|++|+|||+ |+.+++.+... .+..+.+..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 468999999999998 88888887543 3555555554
No 233
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.06 E-value=0.15 Score=46.50 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=28.4
Q ss_pred CcEEEEEEcC-CCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 1 MRRLTSVFGG-AAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 1 mr~IIgI~Gg-sgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
|.++|+|+++ .|+|||| +.-||..|.. .+|.+|++|-
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5578888754 5799999 7778877754 3799999997
No 234
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.99 E-value=0.11 Score=43.59 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|+|++|||||| ...++-.|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 78999999999997 555555554
No 235
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.98 E-value=0.1 Score=46.91 Aligned_cols=24 Identities=4% Similarity=-0.146 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++|.|++|||||| .+.++..+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 379999999999996 455555443
No 236
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.91 E-value=0.11 Score=47.95 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
-+.|.|++|+|||| ++.+++.+.. ..+..++++++
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 47899999999998 7788887753 34666666555
No 237
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.86 E-value=0.1 Score=47.14 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999996 444444443
No 238
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.61 E-value=0.099 Score=50.23 Aligned_cols=24 Identities=4% Similarity=-0.056 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 79999999999997 5556655543
No 239
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.57 E-value=0.14 Score=51.82 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 555555554
No 240
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.54 E-value=0.17 Score=50.50 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCCCCc-HHH--HHHhcc-cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNP--DSNTLI-SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~--la~~L~-~~~v~vI~~Dd 37 (329)
.+++|.|++|||||| ++. ++..+. ..+...|+..+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 379999999999998 655 345554 45777777665
No 241
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.53 E-value=0.099 Score=51.87 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-C-e-EEEEcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-T-T-TVICLD 36 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~-v-~vI~~D 36 (329)
+++|.|++|||||| .+.+++.+... + - ..+..|
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~ 176 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence 68999999999998 77777766432 4 2 555553
No 242
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.52 E-value=0.11 Score=48.80 Aligned_cols=33 Identities=9% Similarity=-0.092 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
.++|.|++|+|||| ++.+++.++. .+...++..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~ 86 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPV 86 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechH
Confidence 58999999999998 7888887743 233344433
No 243
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.43 E-value=0.14 Score=51.98 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 79999999999996 44444444
No 244
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.42 E-value=0.18 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| +..++..+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999998 77777665
No 245
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.41 E-value=0.13 Score=45.33 Aligned_cols=34 Identities=3% Similarity=-0.065 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
-+.|.|++|+|||+ |+.+++.+.. .+..+.+.++
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~-~~~~~~~~~~ 75 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQV-PFLAMAGAEF 75 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTC-CEEEEETTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-CEEEechHHH
Confidence 47799999999998 7778877753 3445555444
No 246
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.39 E-value=0.11 Score=50.11 Aligned_cols=24 Identities=4% Similarity=-0.003 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 78999999999997 5556655543
No 247
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.32 E-value=0.12 Score=46.54 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
-+.|.|++|+|||+ ++.+++.+.. .+..+...++
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~~~ 87 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNA-TFIRVVGSEL 87 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGGGG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehHHH
Confidence 47899999999998 7777777753 3334444443
No 248
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.28 E-value=0.2 Score=45.12 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
+.|.|++|+|||+ |+.+++.+.. .+..+++.++.
T Consensus 53 vll~G~~GtGKT~la~~la~~l~~-~~~~i~~~~~~ 87 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKFT 87 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGGS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-CEEEEcchhcc
Confidence 6799999999998 8888888743 45566665553
No 249
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.26 E-value=0.12 Score=46.74 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~ 24 (329)
+++|.|++|||||| .+.++..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999997 5555554
No 250
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.23 E-value=0.13 Score=49.48 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 78999999999997 555665554
No 251
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.20 E-value=0.11 Score=50.14 Aligned_cols=23 Identities=4% Similarity=-0.167 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 78999999999997 555665554
No 252
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.19 E-value=0.16 Score=49.91 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
+++|.|++|||||| .+.+++.+... ..+|..++
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~G 192 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLIG 192 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEec
Confidence 68999999999998 77777777543 33444443
No 253
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.19 E-value=0.13 Score=46.94 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999996 444554443
No 254
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.15 E-value=0.14 Score=48.86 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
+.|+|++|||||| .+.++..+...+..++..|
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 6899999999998 6666555544333333344
No 255
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.14 E-value=0.11 Score=50.09 Aligned_cols=24 Identities=4% Similarity=-0.155 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 78999999999997 5556655543
No 256
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.12 E-value=0.11 Score=46.20 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 68999999999996 444554443
No 257
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.08 E-value=0.16 Score=44.40 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~D 36 (329)
-|.|+|+||+|||| +|..|...+..+|+=|
T Consensus 18 gvli~G~SGaGKSt---lal~L~~rG~~lvaDD 47 (181)
T 3tqf_A 18 GVLITGEANIGKSE---LSLALIDRGHQLVCDD 47 (181)
T ss_dssp EEEEEESSSSSHHH---HHHHHHHTTCEEEESS
T ss_pred EEEEEcCCCCCHHH---HHHHHHHcCCeEecCC
Confidence 47899999999995 5555544455444433
No 258
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.07 E-value=0.32 Score=54.24 Aligned_cols=22 Identities=5% Similarity=-0.161 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
.|||.|++|||||| .+.|.+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 69999999999997 55555544
No 259
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=89.00 E-value=0.19 Score=47.84 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
..|.|-|+.|||||| ++.|++.|...
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 479999999999999 88888888753
No 260
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.96 E-value=0.2 Score=47.83 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
++||.|++|||||| .+.+++.+..+ +.+|..+
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~ 105 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASAD-IIVLALI 105 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEe
Confidence 78999999999998 77778777643 3344443
No 261
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.87 E-value=0.14 Score=46.84 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999996 555555443
No 262
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.73 E-value=0.2 Score=46.80 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
-|.|.|++|+|||+ |+.+++.+....+..+++.++.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 57899999999998 8888888744345555555443
No 263
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=88.70 E-value=0.14 Score=48.74 Aligned_cols=26 Identities=8% Similarity=-0.215 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
.|.|-|+.|||||| ++.|++.|...+
T Consensus 6 fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 6 RVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEECSCTTSSHHHHHHHHTC----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 68999999999998 777777776544
No 264
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.60 E-value=0.14 Score=46.78 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHh
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~ 24 (329)
+++|.|++|||||| .+.++..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999997 5555554
No 265
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=88.56 E-value=0.17 Score=49.09 Aligned_cols=26 Identities=8% Similarity=-0.215 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDT 29 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~ 29 (329)
.|.|-|+.|||||| ++.|++.|...+
T Consensus 51 fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 51 RVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EEEECSSTTSSHHHHHHHHHC----CC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 58999999999998 788888886555
No 266
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.54 E-value=0.25 Score=46.83 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=29.7
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++++.++|-.|+|||| |..+|..|.. .+|.+|++|.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5678889999999999 7777777764 4799999993
No 267
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.29 E-value=0.13 Score=42.02 Aligned_cols=21 Identities=5% Similarity=-0.093 Sum_probs=16.9
Q ss_pred EEEEcCCCCCCCc-HHHHHHhc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L 25 (329)
|.|.|++|+|||+ |+.+++..
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999997 66666655
No 268
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.25 E-value=0.13 Score=52.12 Aligned_cols=23 Identities=4% Similarity=-0.041 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 79999999999996 444444443
No 269
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.15 E-value=0.17 Score=42.90 Aligned_cols=25 Identities=8% Similarity=-0.116 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
..+.|.|++|+|||| ++.+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 368899999999998 7777777753
No 270
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.12 E-value=0.16 Score=45.95 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+-+.|.|++|+|||+ |+.+++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 357899999999998 777777764
No 271
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.97 E-value=0.34 Score=42.31 Aligned_cols=37 Identities=5% Similarity=-0.054 Sum_probs=28.5
Q ss_pred cEEEEEEcC-CCCCCCc-HHHHHHhccc---CCeEEEEccce
Q 048274 2 RRLTSVFGG-AAEPPKG-GNPDSNTLIS---DTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~Gg-sgSGKST-a~~la~~L~~---~~v~vI~~Ddy 38 (329)
.++|+|+++ .|+|||| +..+|..|.. .+|.+|++|-.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 456777755 5799999 7778888864 37999999965
No 272
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.93 E-value=0.21 Score=45.96 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
+.+.+.|++|+|||+ |+.+|+.++. .+..+++.++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~-~~i~v~~~~l 72 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGI-NPIMMSAGEL 72 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTC-CCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-CEEEEeHHHh
Confidence 367889999999998 8888888853 4555555444
No 273
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.87 E-value=0.12 Score=49.51 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 79999999999997 5556655543
No 274
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.75 E-value=0.24 Score=45.95 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=28.1
Q ss_pred EEEEEEcC-CCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFGG-AAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~Gg-sgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++|.|+|+ .|+|||| |.-||..|.. .+|.+|++|-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 57888887 5899999 7777777754 4799999986
No 275
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.70 E-value=0.26 Score=45.04 Aligned_cols=35 Identities=6% Similarity=-0.103 Sum_probs=28.0
Q ss_pred EEEEEEcC-CCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFGG-AAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~Gg-sgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++|+|+|+ .|+|||| +.-||..|.. .+|.+|++|-
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 47888876 5899999 7777777764 4799999995
No 276
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.62 E-value=0.21 Score=44.57 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-|.|.|++|+|||+ |+.+++.+..
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCc
Confidence 36799999999997 6667666643
No 277
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.54 E-value=0.27 Score=46.84 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.++.|.|++|||||| +..++..+. ...|..|+++.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 479999999999998 655554433 23688888875
No 278
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.47 E-value=0.25 Score=44.14 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=27.1
Q ss_pred EEEEEEc-CCCCCCCc-HHHHHHhcc-cCCeEEEEccce
Q 048274 3 RLTSVFG-GAAEPPKG-GNPDSNTLI-SDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~G-gsgSGKST-a~~la~~L~-~~~v~vI~~Ddy 38 (329)
++|+|++ -.|+|||| |..+|..|. +.+|.+|++|-.
T Consensus 28 ~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD~D~~ 66 (267)
T 3k9g_A 28 KIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQ 66 (267)
T ss_dssp EEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEEECTT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5677755 45799999 777777776 237999999964
No 279
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.41 E-value=0.19 Score=45.61 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+.|.|++|+|||+ |+.+++.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999998 7778888754
No 280
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.39 E-value=0.087 Score=50.47 Aligned_cols=24 Identities=4% Similarity=-0.072 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 79999999999997 5556665543
No 281
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.31 E-value=0.11 Score=52.75 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=16.4
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
+++|.|++||||| |+.+.+.
T Consensus 369 ~~~ivG~sGsGKS---Tll~~l~ 388 (578)
T 4a82_A 369 TVAFVGMSGGGKS---TLINLIP 388 (578)
T ss_dssp EEEEECSTTSSHH---HHHTTTT
T ss_pred EEEEECCCCChHH---HHHHHHh
Confidence 7999999999999 4555554
No 282
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.26 E-value=0.21 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| .+.++..+..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCC
Confidence 79999999999998 6666766654
No 283
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=87.14 E-value=0.33 Score=43.51 Aligned_cols=39 Identities=8% Similarity=0.002 Sum_probs=28.7
Q ss_pred CcEEEEEEcCC-CCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 1 MRRLTSVFGGA-AEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 1 mr~IIgI~Ggs-gSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
|.++|+|+++- |+|||| |..||..|.. .+|.+|++|-..
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34567776554 799999 7778888764 479999999653
No 284
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.08 E-value=0.14 Score=51.98 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
+++|.|++|||||| +.+.|.
T Consensus 371 ~~~ivG~sGsGKST---ll~~l~ 390 (587)
T 3qf4_A 371 LVAVLGETGSGKST---LMNLIP 390 (587)
T ss_dssp EEEEECSSSSSHHH---HHHTTT
T ss_pred EEEEECCCCCCHHH---HHHHHh
Confidence 79999999999995 555554
No 285
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.06 E-value=0.19 Score=46.21 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.|.|.|++|+|||+ |+.+++.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCcCHHHHHHHHHHHhC
Confidence 58899999999998 777777764
No 286
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.98 E-value=0.36 Score=45.59 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHh--c------ccCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNT--L------ISDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~--L------~~~~v~vI~~Ddy 38 (329)
.++.|+|++|||||+ +..++.. + ...++..|+++.-
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 589999999999998 6665554 2 1236778887763
No 287
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=86.89 E-value=0.35 Score=46.19 Aligned_cols=26 Identities=8% Similarity=-0.143 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCCCc-H-HHHHHhcccCC
Q 048274 4 LTSVFGGAAEPPKG-G-NPDSNTLISDT 29 (329)
Q Consensus 4 IIgI~GgsgSGKST-a-~~la~~L~~~~ 29 (329)
.|.|-|+.|||||| + +.|++.|...+
T Consensus 14 ~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 14 RIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 68999999999998 6 78888876543
No 288
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.67 E-value=0.21 Score=41.91 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=18.6
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ ++.+++.+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 7899999999998 777777664
No 289
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.63 E-value=0.21 Score=46.24 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
..+.|.|++|+|||| ++.+++.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999998 777777774
No 290
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.48 E-value=0.21 Score=46.28 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+.|.|++|+|||+ ++.+++.+.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999998 777777774
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.38 E-value=0.22 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=16.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
+++|.|++|||||| .+.++..+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999996 44444444
No 292
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.22 E-value=0.35 Score=45.09 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--------cCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--------SDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--------~~~v~vI~~Ddy 38 (329)
.++.|+|++|||||+ +..++.... ..+|..|+++.-
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 479999999999998 666655431 236788888763
No 293
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=86.17 E-value=0.38 Score=45.13 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
++++-.+|-.|+|||| +..+|..|.. .+|.+|++|--+
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~ 59 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAH 59 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCc
Confidence 3466678888999999 7777777764 379999999753
No 294
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.16 E-value=0.18 Score=50.88 Aligned_cols=23 Identities=4% Similarity=0.042 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
++||.|++|||||| .+.++..+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999996 555555554
No 295
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.15 E-value=0.21 Score=45.47 Aligned_cols=36 Identities=6% Similarity=-0.188 Sum_probs=28.2
Q ss_pred EEEEEEc---CCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFG---GAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~G---gsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
++|+|++ -.|+|||| +..||..|.. .+|.+|++|-.
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4677776 77999999 7777877754 47999999974
No 296
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.11 E-value=0.22 Score=50.19 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 555655553
No 297
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=86.02 E-value=0.48 Score=41.26 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~ 34 (329)
.++.++|+.|||||| +-.+++.+. ..+|.++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 589999999999998 555555553 33677775
No 298
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.01 E-value=0.23 Score=46.71 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+.+.|++|+|||+ |+.+++.+..
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~~ 77 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLDV 77 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47899999999998 8888888753
No 299
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.01 E-value=0.24 Score=46.23 Aligned_cols=24 Identities=8% Similarity=-0.186 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.+.|.|++|+|||+ ++.+++.+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999998 777777763
No 300
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.75 E-value=0.28 Score=41.48 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
..|+|.|++|||||| |.+.|.
T Consensus 30 ~kv~lvG~~g~GKST---Ll~~l~ 50 (191)
T 1oix_A 30 FKVVLIGDSGVGKSN---LLSRFT 50 (191)
T ss_dssp EEEEEEECTTSSHHH---HHHHHH
T ss_pred eEEEEECcCCCCHHH---HHHHHh
Confidence 468999999999995 444443
No 301
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.73 E-value=0.36 Score=48.71 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=29.4
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++++.++|..|+|||| |..+|..|.. .+|.+|++|-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5688899999999999 6667776653 4799999995
No 302
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.68 E-value=0.4 Score=42.87 Aligned_cols=31 Identities=10% Similarity=-0.127 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVI 33 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI 33 (329)
.++.|+|++|||||| +-.++..+.. ..|.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 478899999999999 5455555533 356666
No 303
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.59 E-value=0.21 Score=50.49 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++||.|++|||||| .+.++..+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 489999999999996 555555543
No 304
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.43 E-value=0.21 Score=44.77 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+.|.||+|+|||| |..+++.+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58899999999999 8888888853
No 305
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.40 E-value=0.25 Score=50.75 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++||.|++|||||| .+.++..+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 379999999999997 666666654
No 306
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.39 E-value=0.42 Score=46.46 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHH-Hhcc-------cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDS-NTLI-------SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la-~~L~-------~~~v~vI~~Dd 37 (329)
.++.|+|++|||||| +..++ +.+. ..++..|++.+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 479999999999997 55443 2221 12477777766
No 307
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.36 E-value=0.5 Score=41.35 Aligned_cols=18 Identities=6% Similarity=-0.068 Sum_probs=14.8
Q ss_pred EEEEEEcCCCCCCCc-HHH
Q 048274 3 RLTSVFGGAAEPPKG-GNP 20 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~ 20 (329)
-++.|+|++|||||+ |..
T Consensus 6 mi~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 378899999999998 433
No 308
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.25 E-value=0.27 Score=48.14 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| .+.++..+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 389999999999996 55555544
No 309
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.18 E-value=0.26 Score=50.58 Aligned_cols=24 Identities=4% Similarity=-0.126 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
++||.|++|||||| .+.++..+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 79999999999997 5556665543
No 310
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=85.15 E-value=0.25 Score=49.70 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
+++|.|++|+|||| ++.+++.+.. ....|.+++
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~ 143 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG 143 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence 68999999999998 8888888753 233444444
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.01 E-value=0.34 Score=38.56 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=17.4
Q ss_pred CcE-EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 1 MRR-LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 1 mr~-IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
|+. -|.+.|.+|||||| +.+.|.
T Consensus 1 m~~~~i~v~G~~~~GKss---l~~~l~ 24 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSA---LTIQLI 24 (166)
T ss_dssp CCEEEEEEEESTTSSHHH---HHHHHH
T ss_pred CceeEEEEECCCCCCHHH---HHHHHH
Confidence 654 49999999999994 555553
No 312
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=84.98 E-value=0.48 Score=45.41 Aligned_cols=35 Identities=17% Similarity=-0.053 Sum_probs=20.4
Q ss_pred EEEEEE-cCCCCCCCc-HHHHHHhcc--------cCCeEEEEccc
Q 048274 3 RLTSVF-GGAAEPPKG-GNPDSNTLI--------SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~-GgsgSGKST-a~~la~~L~--------~~~v~vI~~Dd 37 (329)
++|+|+ |-.|+|||| +..||..|. +.+|.+|++|-
T Consensus 112 ~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 112 YVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp EEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred eEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 466666 556899999 777888875 35899999995
No 313
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.90 E-value=0.43 Score=45.63 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.++.|+|++|||||| |..++..+. ...|..|+++.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999998 655554443 23688888864
No 314
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.82 E-value=0.27 Score=49.52 Aligned_cols=23 Identities=4% Similarity=-0.125 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
++||.|++|||||| .+.++..+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 79999999999997 666666554
No 315
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.82 E-value=0.52 Score=44.42 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.+.|++|+|||+ |+.+++.+.
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999998 888888874
No 316
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.66 E-value=0.37 Score=47.09 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
-|.|.|++|+|||+ |+.+++.+....+..+++.++
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 47899999999998 888888874333444554444
No 317
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.51 E-value=0.49 Score=45.07 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--c--CCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--S--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~--~~v~vI~~Dd 37 (329)
+++.++|-.|+|||| |..+|..|. . .+|.+|++|-
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 578899999999999 767777766 3 3799999994
No 318
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.36 E-value=0.38 Score=46.35 Aligned_cols=32 Identities=13% Similarity=-0.018 Sum_probs=20.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLD 36 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~D 36 (329)
+.|.|++|||||+ .+.+...+...+..+|..|
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~D 88 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 88 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 6899999999998 4444444433344444444
No 319
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.30 E-value=0.43 Score=40.95 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.++.|+|+.|||||| +..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999998 44444444
No 320
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.24 E-value=0.71 Score=40.67 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=24.0
Q ss_pred CcEEEEEEcCCCCCCCc--HHHHHHhccc-CCeEEEE
Q 048274 1 MRRLTSVFGGAAEPPKG--GNPDSNTLIS-DTTTVIC 34 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST--a~~la~~L~~-~~v~vI~ 34 (329)
|..+..|.|+.|||||| -+.+.+...+ .++.++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 56789999999999997 3445444433 3566665
No 321
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=84.20 E-value=0.23 Score=47.19 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=28.0
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
|+.|.-..+-.|+|||| +..+|..|.. .+|.+|++|-.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 55544445677899999 7677777754 47999999965
No 322
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.12 E-value=0.44 Score=41.07 Aligned_cols=31 Identities=10% Similarity=-0.144 Sum_probs=23.2
Q ss_pred EEEEEEcC-CCCCCCc-HHHHHHhcccC--CeEEE
Q 048274 3 RLTSVFGG-AAEPPKG-GNPDSNTLISD--TTTVI 33 (329)
Q Consensus 3 ~IIgI~Gg-sgSGKST-a~~la~~L~~~--~v~vI 33 (329)
++|.|+|. .|+|||| +.-||..|... +|.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 67888886 6899999 77788888654 45553
No 323
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.09 E-value=0.36 Score=47.16 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc----CCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS----DTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~----~~v~vI~~Ddy 38 (329)
-+.|.|++|+|||| ++.+++.+.. ..+..+++.+|
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 37899999999998 7778877742 24666676665
No 324
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=83.99 E-value=0.44 Score=45.49 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=27.2
Q ss_pred EEEEEE-cCCCCCCCc-HHHHHHhcc--------cCCeEEEEccc
Q 048274 3 RLTSVF-GGAAEPPKG-GNPDSNTLI--------SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~-GgsgSGKST-a~~la~~L~--------~~~v~vI~~Dd 37 (329)
++|+|+ |-.|+|||| +..+|..|. +.+|.+|++|-
T Consensus 109 ~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 109 YVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp EEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 466666 556799999 777888775 45899999995
No 325
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=83.86 E-value=0.55 Score=47.01 Aligned_cols=34 Identities=6% Similarity=-0.058 Sum_probs=25.5
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
+.|.|++|+|||| ++.+++.+. .....+++-+|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~ 101 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFV 101 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHH
Confidence 7899999999998 777777775 345556665553
No 326
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.83 E-value=0.28 Score=45.40 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.3
Q ss_pred EEEEcCCCCCCCc-HHHHHHhc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L 25 (329)
+.|.|++|+|||| ++.+++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999998 77788855
No 327
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.81 E-value=0.28 Score=50.32 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
++||.|++|||||| .+.++..+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 79999999999996 455555443
No 328
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.79 E-value=0.64 Score=41.95 Aligned_cols=36 Identities=3% Similarity=-0.135 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEccc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDD 37 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Dd 37 (329)
|-.|.+.|..|+|||| +..++..+... .|.++.+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3468899999999999 67777777644 688888886
No 329
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=83.79 E-value=0.41 Score=40.50 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
..|+|.|++|||||| |.+.|.
T Consensus 6 ~kv~lvG~~g~GKST---Ll~~l~ 26 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSN---LLSRFT 26 (199)
T ss_dssp EEEEEESSTTSSHHH---HHHHHH
T ss_pred EEEEEECcCCCCHHH---HHHHHh
Confidence 468999999999995 555543
No 330
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=83.70 E-value=0.44 Score=44.99 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeEEEE
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~ 34 (329)
+-+.|.|.||+||| +++..|...+..+|.
T Consensus 145 ~~vl~~G~sG~GKS---t~a~~l~~~g~~lv~ 173 (314)
T 1ko7_A 145 VGVLITGDSGIGKS---ETALELIKRGHRLVA 173 (314)
T ss_dssp EEEEEEESTTSSHH---HHHHHHHHTTCEEEE
T ss_pred EEEEEEeCCCCCHH---HHHHHHHhcCCceec
Confidence 35889999999999 455555544555553
No 331
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.62 E-value=1 Score=42.89 Aligned_cols=34 Identities=12% Similarity=-0.044 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCCc-HHH-HHHhccc---CCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNP-DSNTLIS---DTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~-la~~L~~---~~v~vI~~Dd 37 (329)
++-|.|++|||||| +.. +++.... ..|..|+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 68899999999998 543 4444432 3465555443
No 332
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.58 E-value=0.33 Score=49.74 Aligned_cols=23 Identities=4% Similarity=-0.125 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|.|++|||||| .+.++..+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 79999999999997 666666554
No 333
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=83.55 E-value=0.32 Score=43.35 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=27.2
Q ss_pred EEEEEEc-CCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFG-GAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~G-gsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++|+|++ -.|+|||| +..+|..|.. .+|.+|++|-
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4677775 55799999 7778888764 4799999996
No 334
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.43 E-value=0.62 Score=42.44 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
+++.|.|+.|+|||+ ++.+++.+.. .+.++++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL-PYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC-CEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC-CEEEEEchhh
Confidence 378999999999997 6666666543 4566666554
No 335
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.12 E-value=0.52 Score=46.90 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
+.+.|+|++|+|||+ |+.+++.+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999998 77788877
No 336
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=82.88 E-value=0.49 Score=44.64 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~~v~vI~~Dd 37 (329)
-|.|+|+||+||| ++|-.|...+..+|+=|-
T Consensus 149 gvli~G~sG~GKS---tlal~l~~~G~~lv~DD~ 179 (312)
T 1knx_A 149 GVLLTGRSGIGKS---ECALDLINKNHLFVGDDA 179 (312)
T ss_dssp EEEEEESSSSSHH---HHHHHHHTTTCEEEEEEE
T ss_pred EEEEEcCCCCCHH---HHHHHHHHcCCEEEeCCE
Confidence 4789999999999 455556555555554443
No 337
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.81 E-value=0.32 Score=45.13 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
-+.|.|++|+|||+ |+.+++.+.. .+..+++.+
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~-~~~~v~~~~ 86 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSD 86 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTC-EEEEEEHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCC-CEEEEchHH
Confidence 47899999999998 7777777643 333444433
No 338
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.74 E-value=0.39 Score=44.69 Aligned_cols=23 Identities=4% Similarity=-0.009 Sum_probs=19.8
Q ss_pred EEEEcCCCCCCCc-HHHHHHhccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+.+.|++|+|||| ++.+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 7899999999998 8888888754
No 339
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=82.62 E-value=0.42 Score=40.47 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|++||||| +|.+.|..
T Consensus 27 ~~v~lvG~~g~GKS---TLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKS---SALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHH---HHHTTTCC
T ss_pred cEEEEECCCCCCHH---HHHHHHhC
Confidence 47999999999999 67777754
No 340
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.53 E-value=0.67 Score=46.17 Aligned_cols=25 Identities=4% Similarity=-0.120 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+++|.|++|||||| +..++..+..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 379999999999998 6666666543
No 341
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=82.49 E-value=0.52 Score=42.93 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
.+.|.|++|+|||+ |+.+++.+.. .+..+.+..+
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~ 74 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGV-NLRVTSGPAI 74 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTC-CEEEECTTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-CEEEEecccc
Confidence 47899999999998 7777777743 3444554443
No 342
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.43 E-value=0.52 Score=44.83 Aligned_cols=35 Identities=0% Similarity=-0.075 Sum_probs=27.1
Q ss_pred EEEEEEc-CCCCCCCc-HHHHHHhccc--CCeEEEEccc
Q 048274 3 RLTSVFG-GAAEPPKG-GNPDSNTLIS--DTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~G-gsgSGKST-a~~la~~L~~--~~v~vI~~Dd 37 (329)
++|+|+| -.|+|||| |..+|..|.. .+|.+|++|.
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 5677765 66899999 7777777753 4799999993
No 343
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=82.42 E-value=0.66 Score=44.07 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=28.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc--c--CCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI--S--DTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~--~--~~v~vI~~Ddy 38 (329)
++|+-.+|-.|.|||| +..+|..|. . .+|.+|++|--
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 3566677888999999 667777776 4 37999999973
No 344
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=82.40 E-value=0.44 Score=44.32 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc-cC--CeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI-SD--TTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~-~~--~v~vI~~D 36 (329)
.-+.|.|++|+|||+ +..+++.+. .. .+..+...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 357899999999998 777777776 43 34444443
No 345
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.12 E-value=0.22 Score=44.34 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=18.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ |+.+++.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 5689999999998 777777664
No 346
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.10 E-value=0.52 Score=43.30 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=18.8
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ |+.+++.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 6799999999998 777877775
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=82.02 E-value=0.55 Score=37.46 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=15.7
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|.|.|.+||||| ++.+.|.
T Consensus 3 ki~v~G~~~~GKS---sli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKS---SLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHh
Confidence 4889999999999 4555554
No 348
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=81.78 E-value=0.58 Score=38.24 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|.+|+||| +|.+.|..
T Consensus 4 ~~v~lvG~~gvGKS---tL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKS---TIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHH---HHHHHHHC
T ss_pred cEEEEECCCCCCHH---HHHHHHhC
Confidence 57999999999999 56666643
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.72 E-value=0.78 Score=45.34 Aligned_cols=34 Identities=3% Similarity=-0.050 Sum_probs=24.7
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
|.+.|++|+|||| |+.+|+.+.. ....+++..+.
T Consensus 53 iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~~~~~ 87 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKFT 87 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-CEEEEEGGGGC
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC-Cceeecchhhc
Confidence 7899999999998 8888888853 34444444443
No 350
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.62 E-value=0.68 Score=42.79 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCCCCc-HHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSN 23 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~ 23 (329)
.++.|+|++|||||+ |..++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998 655554
No 351
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.42 E-value=0.56 Score=44.25 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
-|.|.|++|+|||+ |+.+++.+.. .+..+++.++
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~-~~~~i~~~~l 153 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGA-TFFSISASSL 153 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTC-EEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC-eEEEEehHHh
Confidence 57899999999998 7777777643 3444554444
No 352
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.41 E-value=0.45 Score=44.28 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-CeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-TTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-~v~vI~~Dd 37 (329)
-+.|.|++|+|||+ |+.+++.+... ....+..-.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 58899999999998 88888888643 333344333
No 353
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.41 E-value=0.58 Score=46.02 Aligned_cols=20 Identities=15% Similarity=-0.054 Sum_probs=15.5
Q ss_pred EEEEcCCCCCCCc-HHHHHHh
Q 048274 5 TSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~ 24 (329)
++|.|++|||||| .+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 8999999999996 4444443
No 354
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=80.90 E-value=0.52 Score=43.66 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDS 22 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la 22 (329)
.+++|.|++|||||| .+.++
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999997 55565
No 355
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.69 E-value=0.52 Score=43.32 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||| ++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 7899999999998 788888775
No 356
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.68 E-value=0.61 Score=45.86 Aligned_cols=33 Identities=6% Similarity=-0.044 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
=|.+.||+|+|||. |+.+|+.++. .+..+++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~-~~~~v~~~~ 241 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKA-AFIRVNGSE 241 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTC-EEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecch
Confidence 37899999999998 7888887753 233444443
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=80.52 E-value=0.71 Score=36.76 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=17.2
Q ss_pred CcE-EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 1 MRR-LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 1 mr~-IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
|+. -|+|.|.+||||| ++.+.|.
T Consensus 1 m~~~~i~v~G~~~~GKS---sli~~l~ 24 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKS---ALTVQFV 24 (167)
T ss_dssp CCEEEEEEECCTTSSHH---HHHHHHH
T ss_pred CcEEEEEEECCCCCCHH---HHHHHHH
Confidence 443 5899999999999 4555554
No 358
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.49 E-value=0.75 Score=46.72 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
.++|.|++|+|||| ++.+++.+...
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 58999999999998 88888887643
No 359
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.29 E-value=0.45 Score=45.01 Aligned_cols=22 Identities=5% Similarity=0.003 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
|.|.|++|+|||+ |+.+++.+.
T Consensus 87 iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 7899999999998 778888775
No 360
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=80.28 E-value=0.64 Score=44.26 Aligned_cols=32 Identities=6% Similarity=0.028 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
.++.|.|++|+|||+ |..++.. ....+..+++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence 467899999999997 6555555 3345666666
No 361
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=80.27 E-value=0.72 Score=36.93 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.3
Q ss_pred CcE-EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 1 MRR-LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 1 mr~-IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
|+. -|+|.|.+||||| ++.+.|.
T Consensus 1 m~~~ki~v~G~~~~GKs---sli~~l~ 24 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKS---ALTVQFV 24 (167)
T ss_dssp CCEEEEEEECSTTSSHH---HHHHHHH
T ss_pred CceeEEEEECCCCCCHH---HHHHHHH
Confidence 543 5899999999999 4555553
No 362
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=80.13 E-value=1.1 Score=38.72 Aligned_cols=35 Identities=17% Similarity=-0.078 Sum_probs=25.8
Q ss_pred EEEEE-cCCCCCCCc-HHHHHHhcccC-CeEEEEccce
Q 048274 4 LTSVF-GGAAEPPKG-GNPDSNTLISD-TTTVICLDDY 38 (329)
Q Consensus 4 IIgI~-GgsgSGKST-a~~la~~L~~~-~v~vI~~Ddy 38 (329)
+|+|+ +-.|+|||| +..+|..|... +|.+|++|-.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 56664 666899999 77777777532 7999999853
No 363
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=80.13 E-value=0.087 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+++|.|++|||||| ...++..+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 35789999999997 6666666643
No 364
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.09 E-value=0.75 Score=44.94 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
-+.+.|++|+|||+ |+.+|+.++.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCC
Confidence 47799999999999 8888888863
No 365
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=80.01 E-value=0.6 Score=43.12 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.+++|.|++|||||| +.+.|.
T Consensus 170 eiv~l~G~sG~GKST---ll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSS---LLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHH---HHHHHS
T ss_pred CeEEEECCCCCcHHH---HHHHhc
Confidence 478999999999994 555554
No 366
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=79.96 E-value=0.62 Score=38.73 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|.+||||| ++.+.|..
T Consensus 49 ~~i~vvG~~g~GKS---sll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKT---SLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHH---HHHHHHHH
T ss_pred CEEEEECCCCCCHH---HHHHHHhc
Confidence 36899999999999 55555543
No 367
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.95 E-value=0.88 Score=43.63 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.+|.|+|++|||||| |..++..+. ...|..|+++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 478999999999998 655544432 34788999885
No 368
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.89 E-value=0.8 Score=45.11 Aligned_cols=35 Identities=6% Similarity=-0.061 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
=|.+.||+|+|||. |+.+|+.++. ....+++.++.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~-~f~~v~~s~l~ 252 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNA-TFLKLAAPQLV 252 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGGGC
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCC-CEEEEehhhhh
Confidence 47899999999997 7777777753 34445554443
No 369
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.79 E-value=0.91 Score=45.15 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=24.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
|.|.|++|+|||+ ++.+++.+.. .+..+++.+|.
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~-~f~~is~~~~~ 86 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV-PFFHISGSDFV 86 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-CeeeCCHHHHH
Confidence 7799999999998 7777777643 34445555543
No 370
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.26 E-value=0.71 Score=45.53 Aligned_cols=34 Identities=6% Similarity=-0.070 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
=|.+.||+|+|||. |+.+|+.++. ....+++.++
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~-~~~~v~~s~l 251 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGA-NFIFSPASGI 251 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTC-EEEEEEGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehhhh
Confidence 47899999999998 7778887754 3444444444
No 371
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=79.16 E-value=0.66 Score=42.93 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+.|.|+.|+|||| ++.+++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999998 7778877753
No 372
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=79.12 E-value=0.65 Score=44.57 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHh
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~ 24 (329)
.+++|.|++|||||| .+.|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 378999999999995 4444433
No 373
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=78.66 E-value=0.53 Score=52.31 Aligned_cols=20 Identities=5% Similarity=0.059 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
+++|.|++|||||| +.+.|.
T Consensus 418 ~~~ivG~sGsGKST---l~~ll~ 437 (1284)
T 3g5u_A 418 TVALVGNSGCGKST---TVQLMQ 437 (1284)
T ss_dssp EEEEECCSSSSHHH---HHHHTT
T ss_pred EEEEECCCCCCHHH---HHHHHh
Confidence 79999999999995 555554
No 374
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.63 E-value=0.6 Score=44.43 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.|.|++|+|||+ |+.+++.+.
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc
Confidence 57899999999998 777777764
No 375
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=78.59 E-value=0.86 Score=44.53 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc---cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI---SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~---~~~v~vI~~Dd 37 (329)
.++.|+|++|+|||| +..++..+. +..|.++++..
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 379999999999998 655555443 23688888764
No 376
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=78.25 E-value=0.72 Score=46.84 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccC
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISD 28 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~ 28 (329)
.++.|+||+|+|||| +..++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478899999999998 66666666543
No 377
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.20 E-value=0.94 Score=39.19 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCCCc-HHHH-HHhc-c-cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPD-SNTL-I-SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~l-a~~L-~-~~~v~vI~~Dd 37 (329)
.++-|+|++|+|||+ |..+ ++.+ . ...+.+++++-
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 478999999999998 5443 3433 2 23577777653
No 378
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=78.19 E-value=1.4 Score=40.42 Aligned_cols=36 Identities=8% Similarity=-0.122 Sum_probs=28.1
Q ss_pred EEEEEEcC-CCCCCCc-HHHHHHhccc--CCeEEEEccce
Q 048274 3 RLTSVFGG-AAEPPKG-GNPDSNTLIS--DTTTVICLDDY 38 (329)
Q Consensus 3 ~IIgI~Gg-sgSGKST-a~~la~~L~~--~~v~vI~~Ddy 38 (329)
++|+|+|+ .|+|||| |.-||..|.. .+|.+|++|-.
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 47777776 5799999 7778888764 37999999963
No 379
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.15 E-value=0.94 Score=44.51 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=18.8
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ ++.+++.+.
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999998 788888774
No 380
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.03 E-value=0.77 Score=43.73 Aligned_cols=20 Identities=20% Similarity=0.014 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDS 22 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la 22 (329)
.+.+|+|++|||||| ...++
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 378899999999997 44443
No 381
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=77.78 E-value=1.1 Score=36.79 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|.+|+||| +|.+.|..
T Consensus 8 ~~i~lvG~~gvGKS---tL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKS---TIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHH---HHHHHHHT
T ss_pred CEEEEECCCCCCHH---HHHHHHhC
Confidence 46999999999999 56666654
No 382
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.71 E-value=1 Score=41.21 Aligned_cols=24 Identities=0% Similarity=-0.134 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++.+.|++|+|||+ ++.+++.+.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 467788889999998 777777774
No 383
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=77.60 E-value=0.76 Score=41.53 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ ++.+++.+.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 7899999999998 778888774
No 384
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=77.53 E-value=0.57 Score=52.05 Aligned_cols=22 Identities=5% Similarity=-0.115 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
++||.|++|||||| .+.+++.+
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 79999999999996 44444433
No 385
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.36 E-value=0.85 Score=44.58 Aligned_cols=33 Identities=3% Similarity=-0.038 Sum_probs=23.1
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
|.+.||+|+|||. |+.+|+.++. ....|++.++
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~-~f~~v~~s~l 218 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDC-KFIRVSGAEL 218 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTC-EEEEEEGGGG
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCC-CceEEEhHHh
Confidence 6799999999997 7777777753 2334444443
No 386
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=76.96 E-value=0.59 Score=48.03 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=13.3
Q ss_pred EEEEEcCCCCCCCc
Q 048274 4 LTSVFGGAAEPPKG 17 (329)
Q Consensus 4 IIgI~GgsgSGKST 17 (329)
++||.|++||||||
T Consensus 46 ~~~liGpNGaGKST 59 (670)
T 3ux8_A 46 LVVLTGLSGSGKSS 59 (670)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 79999999999996
No 387
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=76.92 E-value=1.1 Score=40.80 Aligned_cols=32 Identities=16% Similarity=-0.022 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Dd 37 (329)
+++.|.|+.|+|||| ++.+++.+ ++..+++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---PGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---SEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---CcEEEEeec
Confidence 478999999999997 55555554 355555543
No 388
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=76.88 E-value=1.2 Score=41.28 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=23.9
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~D 36 (329)
.++.|+|.+|+|||| +..++.... ...|.++++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 378999999999998 555543332 2357777766
No 389
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=76.70 E-value=0.66 Score=44.71 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEc
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICL 35 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~ 35 (329)
|.+|+.++|-.|+|||| |..+|..+... +|.+|++
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 77889999999999999 76777777543 6777766
No 390
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=76.67 E-value=0.96 Score=37.43 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|++.|.+|||||| +.+.|.
T Consensus 22 ~ki~vvG~~~~GKSs---li~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSA---LTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHH---HHHHHH
T ss_pred eEEEEECcCCCCHHH---HHHHHH
Confidence 358999999999995 555553
No 391
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=76.53 E-value=0.71 Score=42.67 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=17.7
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
|.|.|++|+|||+ |+.+++...
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSS
T ss_pred EEEECCCCchHHHHHHHHHHhCc
Confidence 6799999999997 666666553
No 392
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.49 E-value=0.82 Score=41.14 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ +..+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 7899999999998 788888774
No 393
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=76.16 E-value=0.88 Score=37.86 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.-|+|.|.+|+||| +|.+.|..
T Consensus 3 ~kv~ivG~~gvGKS---tLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKT---TLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHH---HHHHHHTC
T ss_pred eEEEEECCCCCCHH---HHHHHHhc
Confidence 46899999999999 56666653
No 394
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=76.14 E-value=0.95 Score=45.20 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSN 23 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~ 23 (329)
++|+|.|..|.|||| |..+++
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999998 777775
No 395
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=75.94 E-value=0.73 Score=42.39 Aligned_cols=23 Identities=13% Similarity=-0.145 Sum_probs=19.5
Q ss_pred EEEEcCCCCCCCc-HHHHHHhccc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~~ 27 (329)
+.+.|++|+|||+ ++.+++.+..
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 6789999999998 7888887754
No 396
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=75.76 E-value=0.9 Score=44.62 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.|.|++|+|||| |+.+++.+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 47899999999998 777777764
No 397
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.75 E-value=1.4 Score=45.72 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEccceec
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYHS 40 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyhr 40 (329)
.+.+.|++|+|||+ |+.+++.+.. ..+..|++-.|..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 48899999999998 8888888743 3577788877754
No 398
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=75.72 E-value=0.88 Score=45.30 Aligned_cols=37 Identities=5% Similarity=-0.051 Sum_probs=24.2
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhc---c---cCCeEEEEccce
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTL---I---SDTTTVICLDDY 38 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L---~---~~~v~vI~~Ddy 38 (329)
.++|+|.|+.|+|||| |..+++.. . ...+.-++.+..
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 3689999999999997 55554322 1 124666666543
No 399
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.70 E-value=0.77 Score=48.50 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-|.|.|++|||||| ++.+++.+.
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 58899999999997 777777664
No 400
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.49 E-value=0.97 Score=38.46 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
..|.|.|.+|||||| +.+.|.
T Consensus 13 ~~i~~~G~~g~GKTs---l~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTS---LLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHH---HHHHHH
T ss_pred CEEEEECCCCCCHHH---HHHHHh
Confidence 368999999999995 444443
No 401
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=75.47 E-value=0.81 Score=47.03 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=13.2
Q ss_pred EEEEEcCCCCCCCc
Q 048274 4 LTSVFGGAAEPPKG 17 (329)
Q Consensus 4 IIgI~GgsgSGKST 17 (329)
+++|.|++||||||
T Consensus 350 ~vaIiGpnGsGKST 363 (670)
T 3ux8_A 350 FVAVTGVSGSGKST 363 (670)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEEeeCCCCHHH
Confidence 79999999999996
No 402
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=75.45 E-value=1.8 Score=39.14 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=22.8
Q ss_pred CcEEEEEEcCCCCCCCc-HHHHH-Hhccc-CCeEEEE
Q 048274 1 MRRLTSVFGGAAEPPKG-GNPDS-NTLIS-DTTTVIC 34 (329)
Q Consensus 1 mr~IIgI~GgsgSGKST-a~~la-~~L~~-~~v~vI~ 34 (329)
|..+..++|+.|||||| +-..+ +.... .++.++.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45788999999999998 43333 33332 2566665
No 403
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=75.45 E-value=0.94 Score=47.71 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHh
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNT 24 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~ 24 (329)
.+++|+|++|||||| .+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 479999999999998 5555554
No 404
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.32 E-value=1 Score=37.14 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=13.5
Q ss_pred EEEEEEcCCCCCCCc
Q 048274 3 RLTSVFGGAAEPPKG 17 (329)
Q Consensus 3 ~IIgI~GgsgSGKST 17 (329)
.+.+|.|+.||||||
T Consensus 24 g~~~I~G~NGsGKSt 38 (149)
T 1f2t_A 24 GINLIIGQNGSGKSS 38 (149)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 478999999999997
No 405
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.21 E-value=1.2 Score=44.41 Aligned_cols=34 Identities=9% Similarity=-0.033 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
=|.+.||+|+|||. |+.+|+.++. ....+++.++
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~-~fi~vs~s~L 279 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDA-TFIRVIGSEL 279 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTC-EEEEEEGGGG
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCC-CeEEEEhHHh
Confidence 47799999999997 7777777753 3344444444
No 406
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=75.11 E-value=0.95 Score=36.22 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|||||| +.+.|.
T Consensus 6 ~~i~v~G~~~~GKss---l~~~l~ 26 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSS---MIQRYC 26 (168)
T ss_dssp EEEEEECSTTSSHHH---HHHHHH
T ss_pred EEEEEECcCCCCHHH---HHHHHH
Confidence 458999999999994 555554
No 407
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=74.94 E-value=1.2 Score=41.04 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCCeE
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDTTT 31 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~v~ 31 (329)
..|+|.|.+|+||| +|.+.|....+.
T Consensus 9 ~~VaIvG~~nvGKS---TLln~L~g~~~~ 34 (301)
T 1ega_A 9 GFIAIVGRPNVGKS---TLLNKLLGQKIS 34 (301)
T ss_dssp EEEEEECSSSSSHH---HHHHHHHTCSEE
T ss_pred CEEEEECCCCCCHH---HHHHHHHCCCcc
Confidence 47999999999999 677777655443
No 408
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=74.85 E-value=1 Score=42.22 Aligned_cols=24 Identities=4% Similarity=-0.107 Sum_probs=18.4
Q ss_pred EEEE--EcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSV--FGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI--~GgsgSGKST-a~~la~~L~~ 27 (329)
.+.| .|+.|+|||+ ++.+++.+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 4445 9999999998 7777777643
No 409
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=74.82 E-value=0.87 Score=42.94 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC-------CeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD-------TTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~-------~v~vI~~Ddyh 39 (329)
-+-|+|++|+|||+ ++.+++.|... .+.++..+...
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 46799999999999 88888888532 35555555443
No 410
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=74.73 E-value=1.2 Score=43.48 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~ 27 (329)
.+.|.|+.|||||| +..++..|..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999 6666666643
No 411
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.59 E-value=1.4 Score=45.73 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddyh 39 (329)
-+.+.|++|+|||+ |+.+++.+. ..+..|++-.|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc-CCEEEEechhhc
Confidence 47899999999998 888888884 346667766664
No 412
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.47 E-value=1 Score=40.60 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.0
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ ++.+++.+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 7899999999998 777887774
No 413
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=74.31 E-value=1.6 Score=38.27 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=13.5
Q ss_pred EEEEEEcCCCCCCCc
Q 048274 3 RLTSVFGGAAEPPKG 17 (329)
Q Consensus 3 ~IIgI~GgsgSGKST 17 (329)
+.+.|.|++||||||
T Consensus 77 ~~~~i~g~TGsGKTt 91 (235)
T 3llm_A 77 SVVIIRGATGCGKTT 91 (235)
T ss_dssp SEEEEECCTTSSHHH
T ss_pred CEEEEEeCCCCCcHH
Confidence 468999999999997
No 414
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=73.94 E-value=1.1 Score=35.74 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+||||| ++.+.|.
T Consensus 5 ~~i~v~G~~~~GKs---sl~~~l~ 25 (168)
T 1u8z_A 5 HKVIMVGSGGVGKS---ALTLQFM 25 (168)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred EEEEEECCCCCCHH---HHHHHHH
Confidence 45899999999999 5555554
No 415
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=73.77 E-value=1.1 Score=36.37 Aligned_cols=21 Identities=5% Similarity=0.041 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+||||| ++.+.|.
T Consensus 9 ~~i~v~G~~~~GKS---sli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKT---SLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 4555553
No 416
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=73.40 E-value=1 Score=36.56 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.2
Q ss_pred EEEEcCCCCCCCcHHHHHHhcccC
Q 048274 5 TSVFGGAAEPPKGGNPDSNTLISD 28 (329)
Q Consensus 5 IgI~GgsgSGKSTa~~la~~L~~~ 28 (329)
|.|.|++|+||| ++|+.+...
T Consensus 30 vll~G~~GtGKt---~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFE---TVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHH---HHHGGGCCT
T ss_pred EEEECCCCccHH---HHHHHHHHh
Confidence 679999999999 677777643
No 417
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=73.29 E-value=0.91 Score=45.18 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.|.|++|+|||+ |+.+++.+.
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred cEEEECcCCCCHHHHHHHHHHHhC
Confidence 37899999999998 777777764
No 418
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=73.19 E-value=2 Score=38.27 Aligned_cols=32 Identities=6% Similarity=-0.095 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEE
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVIC 34 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~ 34 (329)
.+..++|+.|||||| +-.++..... .+|.++.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999999 4444444432 2566664
No 419
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=73.13 E-value=1.5 Score=41.63 Aligned_cols=35 Identities=9% Similarity=-0.050 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.++.|+|.+|+|||| +..++..+. ...|.++++.-
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 378999999999998 555544433 33577777753
No 420
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=73.09 E-value=1.1 Score=47.31 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCc-HHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSN 23 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~ 23 (329)
.+++|+|+.|||||| .+.++.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 489999999999997 454444
No 421
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=73.08 E-value=0.45 Score=44.63 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.+++|.|++||||| ||.|.|..
T Consensus 174 ~~~~lvG~sG~GKS---TLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKS---SLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHH---HHHHHHCC
T ss_pred CEEEEECCCCCCHH---HHHHHhcc
Confidence 37899999999999 56666653
No 422
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.04 E-value=1.9 Score=39.92 Aligned_cols=20 Identities=10% Similarity=0.053 Sum_probs=15.8
Q ss_pred EEEEEcCCCCCCCc-HHHHHH
Q 048274 4 LTSVFGGAAEPPKG-GNPDSN 23 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~ 23 (329)
+.+|+|+.|||||| ...+.-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 78999999999997 444443
No 423
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.97 E-value=1.2 Score=35.69 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=15.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|.|.|.+||||| ++.+.|.
T Consensus 5 ~i~v~G~~~~GKs---sli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKS---SIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHH---HHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHh
Confidence 5899999999999 4555553
No 424
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=72.92 E-value=1.7 Score=38.97 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
+.|+|.|.+||||| ++.+.|..
T Consensus 4 ~~i~lvG~~g~GKT---TL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKT---TIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHH---HHHHHHHT
T ss_pred eEEEEECCCCCCHH---HHHHHHhC
Confidence 57999999999999 56666543
No 425
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=72.79 E-value=1.3 Score=42.68 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L 25 (329)
.+++|.|++|||||| ...++-.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 478999999999997 44454444
No 426
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.78 E-value=1.5 Score=45.51 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ |+.+++.+.
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999998 888888874
No 427
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=72.60 E-value=1.2 Score=35.63 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| ++.+.|.
T Consensus 4 ~~i~v~G~~~~GKs---sli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKS---SLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 5666654
No 428
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=72.46 E-value=1.3 Score=35.90 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|.+|+||| ++.+.|..
T Consensus 9 ~~i~v~G~~~~GKs---sl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKT---TLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHH---HHHHHHHT
T ss_pred CEEEEECCCCCCHH---HHHHHHhC
Confidence 46899999999999 56666643
No 429
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=72.45 E-value=1.8 Score=42.01 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=24.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc---cCCeEEEEcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI---SDTTTVICLD 36 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~---~~~v~vI~~D 36 (329)
.++.|+|++|+|||+ +..++.... ...|.++++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 378999999999998 555544432 2368888776
No 430
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=72.29 E-value=1.1 Score=35.80 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| ++.+.|.
T Consensus 4 ~~i~v~G~~~~GKs---sli~~l~ 24 (170)
T 1g16_A 4 MKILLIGDSGVGKS---CLLVRFV 24 (170)
T ss_dssp EEEEEEESTTSSHH---HHHHHHH
T ss_pred eEEEEECcCCCCHH---HHHHHHH
Confidence 35899999999999 5555554
No 431
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=72.17 E-value=1.3 Score=35.54 Aligned_cols=20 Identities=5% Similarity=0.038 Sum_probs=16.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+|+||| ++.+.|.
T Consensus 8 ~i~v~G~~~~GKS---sli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKS---SIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEECcCCCCHH---HHHHHHH
Confidence 5899999999999 5555553
No 432
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.06 E-value=1.5 Score=43.34 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEccce
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISDTTTVICLDDY 38 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~Ddy 38 (329)
=|.+.||+|+|||. |+.+|+.++. ....+++.++
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~-~fi~v~~s~l 252 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSA-TFLRIVGSEL 252 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTC-EEEEEESGGG
T ss_pred CCceECCCCchHHHHHHHHHHHhCC-CEEEEEHHHh
Confidence 37899999999997 7777777753 2334444443
No 433
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.06 E-value=1.4 Score=38.13 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+..|+|+.|||||| ...+.-.|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 478999999999997 444443443
No 434
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=71.97 E-value=1.3 Score=35.94 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=16.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+|+||| ++.+.|.
T Consensus 9 ~i~v~G~~~~GKS---sli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKS---SLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHH
Confidence 5899999999999 5555553
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=71.83 E-value=1.3 Score=35.75 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.-|+|.|.+|+||| +|.+.|..
T Consensus 5 ~ki~i~G~~~vGKS---sl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKT---SLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHH---HHHHHHHC
T ss_pred EEEEEECCCCccHH---HHHHHHhc
Confidence 35899999999999 56666653
No 436
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=71.81 E-value=1.6 Score=35.08 Aligned_cols=21 Identities=10% Similarity=-0.100 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 8 ~~i~v~G~~~~GKs---sl~~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKT---TILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred cEEEEECCCCCCHH---HHHHHHh
Confidence 46899999999999 5666653
No 437
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=71.80 E-value=1.1 Score=36.78 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
..|.|.|.+||||| ++.+.|.
T Consensus 24 ~~i~v~G~~~~GKS---sli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKS---SLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHH
Confidence 46899999999999 5666664
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=71.70 E-value=1.2 Score=36.81 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|.+|+||| +|.+.|..
T Consensus 5 ~ki~ivG~~g~GKS---tLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKS---SLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHH---HHHHHHHT
T ss_pred CEEEEECCCCCCHH---HHHHHHhC
Confidence 36899999999999 56666643
No 439
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=71.68 E-value=1.5 Score=44.10 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=18.0
Q ss_pred EEEEcCCCCCCCc--HHHHHHhccc
Q 048274 5 TSVFGGAAEPPKG--GNPDSNTLIS 27 (329)
Q Consensus 5 IgI~GgsgSGKST--a~~la~~L~~ 27 (329)
+.|.||+|||||+ .+.++..+..
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~ 49 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSV 49 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHh
Confidence 6789999999999 5666666643
No 440
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=71.64 E-value=1.3 Score=35.79 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.-|+|.|.+|+||| +|.+.|..
T Consensus 10 ~~i~v~G~~~~GKs---sl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKS---SLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHH---HHHHHHCS
T ss_pred eEEEEECCCCCCHH---HHHHHHhc
Confidence 35899999999999 67777653
No 441
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=71.62 E-value=1.7 Score=39.03 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcccC
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLISD 28 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~~ 28 (329)
.|++.|.++|||| +|.+.|...
T Consensus 3 kI~lvG~~n~GKS---TL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKT---TLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHH---HHHHHHHTT
T ss_pred EEEEECCCCCCHH---HHHHHHHCC
Confidence 4789999999999 566666543
No 442
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=71.54 E-value=1.9 Score=44.06 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCCCc--HHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKG--GNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKST--a~~la~~L~~ 27 (329)
+..|.||+|+|||+ ++.++..+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 67899999999998 4555555543
No 443
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=71.52 E-value=1.3 Score=35.59 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=16.2
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+|+||| +|.+.|.
T Consensus 4 ki~ivG~~~~GKS---sli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKS---TLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHH---HHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHH
Confidence 4899999999999 5666653
No 444
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=71.31 E-value=1.2 Score=35.60 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCCCcHHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
-|+|.|.+|+||| +|.+.|..
T Consensus 4 ki~~vG~~~~GKS---sli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKS---ALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHH---HHHHHHCC
T ss_pred EEEEECCCCCCHH---HHHHHHcC
Confidence 4899999999999 56666643
No 445
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=71.28 E-value=1.4 Score=35.38 Aligned_cols=21 Identities=5% Similarity=-0.134 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| ++.+.|.
T Consensus 7 ~~i~v~G~~~~GKs---sli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKT---SLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHH---HHHHHHH
T ss_pred eEEEEECcCCCCHH---HHHHHHH
Confidence 35899999999999 4555554
No 446
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=71.28 E-value=0.95 Score=46.20 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTL 25 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L 25 (329)
.|+|.|++|||||| .+.++..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999997 55555554
No 447
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=71.26 E-value=1.5 Score=35.55 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+||||| +|.+.|.
T Consensus 10 ~~i~v~G~~~~GKs---sli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKS---ALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHH
Confidence 46899999999999 4555554
No 448
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=71.17 E-value=2.2 Score=42.19 Aligned_cols=22 Identities=9% Similarity=-0.078 Sum_probs=16.9
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhc
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTL 25 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L 25 (329)
.+++.|.|+.|||||| .+.+.+
T Consensus 161 ~~v~~I~G~aGsGKTt--~I~~~~ 182 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTK--EILSRV 182 (446)
T ss_dssp SEEEEEEECTTSCHHH--HHHHHC
T ss_pred ccEEEEEcCCCCCHHH--HHHHHh
Confidence 4689999999999996 344444
No 449
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=71.05 E-value=1.7 Score=37.90 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| ++.+.|.
T Consensus 30 ~~i~lvG~~g~GKS---tlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKS---ATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHc
Confidence 46899999999999 4555554
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=70.99 E-value=2.1 Score=38.65 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=18.4
Q ss_pred cEEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 2 RRLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 2 r~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
+..|+|.|.++|||| +|.+.|..
T Consensus 3 ~~~I~lvG~~n~GKS---TLin~l~g 25 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKT---TLFNQLTG 25 (274)
T ss_dssp CEEEEEEECTTSSHH---HHHHHHHT
T ss_pred ccEEEEECCCCCCHH---HHHHHHhC
Confidence 567999999999999 56666644
No 451
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.95 E-value=1.9 Score=47.97 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=16.1
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.++|.|++|||||| +.+.|.
T Consensus 446 ~vaivG~sGsGKST---ll~ll~ 465 (1321)
T 4f4c_A 446 TVALVGSSGCGKST---IISLLL 465 (1321)
T ss_dssp EEEEEECSSSCHHH---HHHHHT
T ss_pred EEEEEecCCCcHHH---HHHHhc
Confidence 79999999999995 555554
No 452
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.82 E-value=1.2 Score=47.09 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcccC--CeEEEEcccee
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLISD--TTTVICLDDYH 39 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~~~--~v~vI~~Ddyh 39 (329)
-+.|.|++|+|||+ |+.+++.+... .+..|.+..|.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 58899999999998 88888887532 45566666654
No 453
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=70.73 E-value=1.3 Score=37.08 Aligned_cols=21 Identities=10% Similarity=-0.100 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCCCcHHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.|+|.|.+|+||| ++.+.|..
T Consensus 25 ki~~vG~~~vGKS---sli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKT---TLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHH---HHHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHhc
Confidence 5899999999999 55555543
No 454
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=70.49 E-value=1.4 Score=43.24 Aligned_cols=23 Identities=0% Similarity=-0.172 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.++|+|++|+|||| ++.+++.+.
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHHh
Confidence 58999999999998 666777664
No 455
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=70.08 E-value=1.4 Score=42.94 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=15.5
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|++|||||| |.+.|.
T Consensus 33 ~I~lvG~sGaGKST---Lln~L~ 52 (418)
T 2qag_C 33 TLMVVGESGLGKST---LINSLF 52 (418)
T ss_dssp EEEEECCTTSSHHH---HHHHHT
T ss_pred EEEEECCCCCcHHH---HHHHHh
Confidence 47999999999995 555543
No 456
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=69.99 E-value=1.5 Score=35.93 Aligned_cols=21 Identities=5% Similarity=-0.140 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 12 ~ki~v~G~~~~GKS---sli~~l~ 32 (195)
T 3bc1_A 12 IKFLALGDSGVGKT---SVLYQYT 32 (195)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred EEEEEECCCCCCHH---HHHHHHh
Confidence 35899999999999 4555554
No 457
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.90 E-value=2.2 Score=42.79 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCCc-HHHHHH-hcc---cCCeEEEEcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSN-TLI---SDTTTVICLD 36 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~-~L~---~~~v~vI~~D 36 (329)
+.|+|.+|||||+ .+++.. .+. ...+.++-.|
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 6899999999998 555443 232 2356666655
No 458
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=69.77 E-value=1.7 Score=34.60 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| ++.+.|.
T Consensus 7 ~~i~v~G~~~~GKs---sli~~l~ 27 (170)
T 1r2q_A 7 FKLVLLGESAVGKS---SLVLRFV 27 (170)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred EEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 4555553
No 459
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=69.75 E-value=0.6 Score=44.44 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
+++|+|++|||||| .+.++-.+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999997 444554443
No 460
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=69.69 E-value=1.5 Score=34.99 Aligned_cols=19 Identities=16% Similarity=-0.067 Sum_probs=15.2
Q ss_pred EEEEcCCCCCCCcHHHHHHhcc
Q 048274 5 TSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKSTa~~la~~L~ 26 (329)
|+|.|.+|+||| ++.+.|.
T Consensus 3 i~~~G~~~~GKs---sl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKT---TILYKLK 21 (164)
T ss_dssp EEEECSTTSSHH---HHHHHHH
T ss_pred EEEECCCCCCHH---HHHHHHH
Confidence 789999999999 4555553
No 461
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=69.59 E-value=1.5 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.9
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
.+++.|+|++|+|||| +..+...|.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3578999999999998 555555553
No 462
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=69.50 E-value=1.3 Score=36.65 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
..|+|.|.+||||| ++.+.|.
T Consensus 24 ~~i~v~G~~~~GKS---sli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKS---SFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHH---HHHHHHH
T ss_pred CEEEEECCCCCCHH---HHHHHHh
Confidence 35899999999999 5655554
No 463
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=69.50 E-value=1.9 Score=35.34 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+|||| |.+.|.
T Consensus 8 ~ki~v~G~~~~GKSs---li~~l~ 28 (208)
T 3clv_A 8 YKTVLLGESSVGKSS---IVLRLT 28 (208)
T ss_dssp EEEEEECCTTSSHHH---HHHHHH
T ss_pred eEEEEECCCCCCHHH---HHHHHH
Confidence 458999999999994 555554
No 464
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=69.49 E-value=1.6 Score=35.15 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=15.9
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+||||| +|.+.|.
T Consensus 16 ~i~v~G~~~~GKs---sli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKT---SLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHH---HHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHH
Confidence 5899999999999 4555553
No 465
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=69.29 E-value=1.8 Score=35.32 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+||||| +|.+.|.
T Consensus 5 ~ki~v~G~~~~GKS---sli~~l~ 25 (189)
T 4dsu_A 5 YKLVVVGADGVGKS---ALTIQLI 25 (189)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 4555553
No 466
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=69.11 E-value=1.7 Score=41.70 Aligned_cols=24 Identities=17% Similarity=-0.007 Sum_probs=18.9
Q ss_pred CcEEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 1 MRRLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 1 mr~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
|...|+|.|.+++|||| |.+.|..
T Consensus 1 m~~kI~IVG~pnvGKST---L~n~Lt~ 24 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKST---LFNALTK 24 (363)
T ss_dssp CCCEEEEECCTTSSHHH---HHHHHHH
T ss_pred CCCEEEEECCCCCCHHH---HHHHHHC
Confidence 66779999999999994 5555543
No 467
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.03 E-value=1.6 Score=35.63 Aligned_cols=22 Identities=9% Similarity=-0.130 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.-|+|.|.+||||| ++.+.|..
T Consensus 19 ~~i~v~G~~~~GKs---sli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKT---TILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHH---HHHHHTCC
T ss_pred cEEEEECCCCCCHH---HHHHHHhc
Confidence 46899999999999 67777754
No 468
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.88 E-value=1.7 Score=45.96 Aligned_cols=22 Identities=5% Similarity=0.071 Sum_probs=18.9
Q ss_pred EEEEcCCCCCCCc-HHHHHHhcc
Q 048274 5 TSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 5 IgI~GgsgSGKST-a~~la~~L~ 26 (329)
+.|.|++|+|||+ ++.+++.+.
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHHh
Confidence 6799999999998 788888773
No 469
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=68.85 E-value=1.6 Score=42.33 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCc-HHHHHH
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSN 23 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~ 23 (329)
..+||.|.+|||||| .+.+++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 479999999999996 444444
No 470
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=68.72 E-value=1.7 Score=35.28 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 7 ~ki~v~G~~~~GKs---sl~~~l~ 27 (178)
T 2hxs_A 7 LKIVVLGDGASGKT---SLTTCFA 27 (178)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEEECcCCCCHH---HHHHHHH
Confidence 35899999999999 5555554
No 471
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=68.70 E-value=1.7 Score=35.68 Aligned_cols=15 Identities=7% Similarity=-0.033 Sum_probs=13.2
Q ss_pred EEEEEEcCCCCCCCc
Q 048274 3 RLTSVFGGAAEPPKG 17 (329)
Q Consensus 3 ~IIgI~GgsgSGKST 17 (329)
.-|.|.|.+|+||||
T Consensus 15 ~ki~vvG~~~~GKss 29 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTT 29 (198)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 358999999999995
No 472
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=67.99 E-value=1.7 Score=35.33 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 19 ~ki~v~G~~~~GKS---sli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKS---ALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHh
Confidence 35899999999999 5555554
No 473
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=67.91 E-value=1.5 Score=46.66 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=14.0
Q ss_pred EEEEEEcCCCCCCCc
Q 048274 3 RLTSVFGGAAEPPKG 17 (329)
Q Consensus 3 ~IIgI~GgsgSGKST 17 (329)
.++.|+|.|||||||
T Consensus 37 ~l~viTGvSGSGKSS 51 (842)
T 2vf7_A 37 ALVVFTGVSGSGKSS 51 (842)
T ss_dssp SEEEEESSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 589999999999998
No 474
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=67.88 E-value=3.2 Score=34.29 Aligned_cols=22 Identities=14% Similarity=-0.049 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
..|+|.|.+|+||| +|.+.|..
T Consensus 17 ~ki~ivG~~~vGKS---sL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKT---TLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHH---HHHHHHCC
T ss_pred eEEEEECCCCCCHH---HHHHHHhc
Confidence 46899999999999 67777654
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=67.83 E-value=2.9 Score=35.98 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcccCC
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLISDT 29 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~~~ 29 (329)
..|.|.|.+|+||| +|.+.|....
T Consensus 30 ~kI~vvG~~~vGKS---sLin~l~~~~ 53 (228)
T 2qu8_A 30 KTIILSGAPNVGKS---SFMNIVSRAN 53 (228)
T ss_dssp EEEEEECSTTSSHH---HHHHHHTTTC
T ss_pred CEEEEECCCCCCHH---HHHHHHhCCC
Confidence 56899999999999 6777775543
No 476
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=67.79 E-value=2 Score=35.11 Aligned_cols=21 Identities=5% Similarity=-0.200 Sum_probs=9.7
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 9 ~ki~v~G~~~~GKs---sl~~~l~ 29 (183)
T 2fu5_C 9 FKLLLIGDSGVGKT---CVLFRFS 29 (183)
T ss_dssp EEEEEECCCCC-------------
T ss_pred eEEEEECCCCCCHH---HHHHHHH
Confidence 45899999999999 4555553
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=67.76 E-value=1.7 Score=34.99 Aligned_cols=21 Identities=5% Similarity=-0.140 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|.|.|.+|+||| ++.+.|.
T Consensus 16 ~~i~v~G~~~~GKS---sli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKS---CLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 5555554
No 478
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=67.60 E-value=1.7 Score=36.13 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=16.2
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+||||| +|.+.|.
T Consensus 16 ki~v~G~~~~GKS---sli~~l~ 35 (206)
T 2bov_A 16 KVIMVGSGGVGKS---ALTLQFM 35 (206)
T ss_dssp EEEEECSTTSSHH---HHHHHHH
T ss_pred EEEEECCCCCCHH---HHHHHHH
Confidence 5899999999999 5655554
No 479
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=67.57 E-value=1.5 Score=35.91 Aligned_cols=21 Identities=10% Similarity=-0.108 Sum_probs=16.6
Q ss_pred EEEEEcCCCCCCCcHHHHHHhccc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
-|+|.|.+|+||| ++.+.|..
T Consensus 3 ki~v~G~~~~GKS---sli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKS---TLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHH---HHHHHHHS
T ss_pred EEEEECCCCCCHH---HHHHHHhC
Confidence 3789999999999 56666653
No 480
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=67.57 E-value=1.7 Score=46.79 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=14.0
Q ss_pred EEEEEEcCCCCCCCc
Q 048274 3 RLTSVFGGAAEPPKG 17 (329)
Q Consensus 3 ~IIgI~GgsgSGKST 17 (329)
++|.|+|.||||||+
T Consensus 25 ~l~v~tG~SGSGKSs 39 (916)
T 3pih_A 25 RLVVITGVSGSGKSS 39 (916)
T ss_dssp SEEEEEESTTSSSHH
T ss_pred cEEEEECCCCCcHHH
Confidence 589999999999997
No 481
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=67.47 E-value=2.9 Score=39.22 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhcccCCeEEEEc
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLISDTTTVICL 35 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~~~v~vI~~ 35 (329)
+.+|.+-|.-|||||| .+.|...|...++.|+.+
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 4588999999999999 888999998877777764
No 482
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=67.40 E-value=1.7 Score=35.61 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|.|.|.+||||| +|.+.|.
T Consensus 11 ~ki~v~G~~~~GKS---sli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKS---CLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 5555553
No 483
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=67.31 E-value=1.9 Score=35.05 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=16.0
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+|+||| ++.+.|.
T Consensus 14 ki~v~G~~~~GKS---sli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKS---SLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHH---HHHHHHH
T ss_pred EEEEECcCCCCHH---HHHHHHH
Confidence 5899999999999 5555554
No 484
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=67.21 E-value=1.4 Score=40.69 Aligned_cols=19 Identities=16% Similarity=-0.106 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCCCc-HHHHH
Q 048274 4 LTSVFGGAAEPPKG-GNPDS 22 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la 22 (329)
-|+|.|++|||||| .+.++
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999996 44443
No 485
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=67.03 E-value=2.2 Score=34.96 Aligned_cols=22 Identities=5% Similarity=-0.148 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhccc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLIS 27 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~~ 27 (329)
.-|+|.|.+|+||| ++.+.|..
T Consensus 19 ~~i~v~G~~~~GKs---sl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKT---TILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHH---HHHHHHTT
T ss_pred eEEEEECCCCCCHH---HHHHHHhc
Confidence 45899999999999 66666653
No 486
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=67.02 E-value=2 Score=35.06 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 7 ~ki~~~G~~~~GKS---sli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKS---SLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHH---HHHHHHH
T ss_pred EEEEEECcCCCCHH---HHHHHHH
Confidence 46899999999999 5555554
No 487
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=66.92 E-value=1.9 Score=35.04 Aligned_cols=21 Identities=5% Similarity=-0.191 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 11 ~~i~v~G~~~~GKs---sli~~l~ 31 (180)
T 2g6b_A 11 FKVMLVGDSGVGKT---CLLVRFK 31 (180)
T ss_dssp EEEEEECSTTSSHH---HHHHHHH
T ss_pred eEEEEECcCCCCHH---HHHHHHH
Confidence 35899999999999 5555554
No 488
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=66.92 E-value=1.8 Score=35.31 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+|||| |.+.|.
T Consensus 19 ~ki~v~G~~~~GKSs---l~~~l~ 39 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSA---LTIQFF 39 (183)
T ss_dssp EEEEEECSTTSSHHH---HHHHHH
T ss_pred eEEEEECCCCCCHHH---HHHHHH
Confidence 358999999999994 555553
No 489
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=66.85 E-value=1.8 Score=35.80 Aligned_cols=21 Identities=5% Similarity=-0.077 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 26 ~ki~v~G~~~~GKS---sLi~~l~ 46 (193)
T 2oil_A 26 FKVVLIGESGVGKT---NLLSRFT 46 (193)
T ss_dssp EEEEEESSTTSSHH---HHHHHHH
T ss_pred eEEEEECcCCCCHH---HHHHHHh
Confidence 35899999999999 5655554
No 490
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=66.56 E-value=2.2 Score=37.69 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
..|+|.|.+||||| ++.+.|.
T Consensus 23 ~~I~lvG~~g~GKS---tl~n~l~ 43 (260)
T 2xtp_A 23 LRIILVGKTGTGKS---AAGNSIL 43 (260)
T ss_dssp EEEEEEECTTSCHH---HHHHHHH
T ss_pred eEEEEECCCCCCHH---HHHHHHh
Confidence 46899999999999 5555554
No 491
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.37 E-value=2.6 Score=43.56 Aligned_cols=23 Identities=4% Similarity=-0.000 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCc-HHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKG-GNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~~L~ 26 (329)
-+.|.|++|+|||+ ++.+++.+.
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHH
Confidence 36799999999998 777887774
No 492
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=66.15 E-value=2 Score=35.01 Aligned_cols=20 Identities=15% Similarity=-0.072 Sum_probs=15.8
Q ss_pred EEEEEcCCCCCCCcHHHHHHhcc
Q 048274 4 LTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 4 IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
-|+|.|.+|+|||| |.+.|.
T Consensus 7 ~i~~~G~~~~GKss---l~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTC---LLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHH---HHHHHH
T ss_pred EEEEECCCCCCHHH---HHHHHH
Confidence 58999999999994 555553
No 493
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.11 E-value=2.4 Score=41.46 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc--cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI--SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~--~~~v~vI~~Dd 37 (329)
.++.|+|.+|+|||| +..++.... ...|.++++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 378999999999998 544443332 33577777763
No 494
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=65.91 E-value=2 Score=35.85 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 9 ~ki~v~G~~~~GKS---sli~~l~ 29 (207)
T 1vg8_A 9 LKVIILGDSGVGKT---SLMNQYV 29 (207)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred eEEEEECcCCCCHH---HHHHHHH
Confidence 36899999999999 5555554
No 495
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.42 E-value=2.2 Score=41.98 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCCCCc-HHHHHHhcc---cCCeEEEEccc
Q 048274 3 RLTSVFGGAAEPPKG-GNPDSNTLI---SDTTTVICLDD 37 (329)
Q Consensus 3 ~IIgI~GgsgSGKST-a~~la~~L~---~~~v~vI~~Dd 37 (329)
.++.|+|++|+|||+ +..++..+. ...|.+++++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 478999999999998 555544433 23688887754
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=65.35 E-value=2 Score=46.49 Aligned_cols=19 Identities=5% Similarity=-0.137 Sum_probs=15.3
Q ss_pred EEEEEcCCCCCCCc-HHHHH
Q 048274 4 LTSVFGGAAEPPKG-GNPDS 22 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la 22 (329)
+++|.|++|||||| .+.++
T Consensus 463 ~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 79999999999996 44444
No 497
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=65.10 E-value=3.7 Score=41.24 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCCCCCc-HHHHHHhccc--CCeEEEEcccee
Q 048274 2 RRLTSVFGGAAEPPKG-GNPDSNTLIS--DTTTVICLDDYH 39 (329)
Q Consensus 2 r~IIgI~GgsgSGKST-a~~la~~L~~--~~v~vI~~Ddyh 39 (329)
+.++.+.|..|+|||| |..+|..|.. .++.+|++|-.+
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 3466678888999999 6667777753 479999999654
No 498
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=64.88 E-value=1.6 Score=46.90 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=13.7
Q ss_pred EEEEEEcCCCCCCCc
Q 048274 3 RLTSVFGGAAEPPKG 17 (329)
Q Consensus 3 ~IIgI~GgsgSGKST 17 (329)
.+++|+|++||||||
T Consensus 611 eiv~I~G~SGSGKST 625 (916)
T 3pih_A 611 VFVCVTGVSGSGKSS 625 (916)
T ss_dssp SEEEEECSTTSSHHH
T ss_pred cEEEEEccCCCChhh
Confidence 379999999999997
No 499
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=64.73 E-value=2.2 Score=35.29 Aligned_cols=21 Identities=10% Similarity=-0.094 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCCCCcHHHHHHhcc
Q 048274 3 RLTSVFGGAAEPPKGGNPDSNTLI 26 (329)
Q Consensus 3 ~IIgI~GgsgSGKSTa~~la~~L~ 26 (329)
.-|+|.|.+|+||| +|.+.|.
T Consensus 21 ~ki~v~G~~~~GKS---sli~~l~ 41 (189)
T 1z06_A 21 FKIIVIGDSNVGKT---CLTYRFC 41 (189)
T ss_dssp EEEEEECCTTSSHH---HHHHHHH
T ss_pred EEEEEECCCCCCHH---HHHHHHH
Confidence 35899999999999 4555554
No 500
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=64.70 E-value=2.2 Score=40.87 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=15.3
Q ss_pred EEEEEcCCCCCCCc-HHHHHH
Q 048274 4 LTSVFGGAAEPPKG-GNPDSN 23 (329)
Q Consensus 4 IIgI~GgsgSGKST-a~~la~ 23 (329)
.|+|.|.+|||||| .+.+++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 48999999999996 444443
Done!