BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048276
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/221 (58%), Positives = 164/221 (74%), Gaps = 5/221 (2%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
VP+S+D R+ GAVT VKDQG C CWAFS++ AVEGI +I+T KL+SLSEQELVDCDT
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
++GC G MD AFEFIK G+TTEA+YP+ D G C +K+ +A A +I G + VP
Sbjct: 62 -NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD-GTCDVSKE--NAPAVSIDGHENVP 117
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
N+E AL++ VA+QPVSV+ID+ G FQFYS G+ + CGT++DHGV +GYG + DGT
Sbjct: 118 ENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVF-TGSCGTELDHGVAIVGYGTTIDGT 176
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
KYW VKNSWG WGE GY+R++R + +EG CGIAM ASYP
Sbjct: 177 KYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYP 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 125/226 (55%), Positives = 157/226 (69%), Gaps = 4/226 (1%)
Query: 120 VTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCD 179
V+D+P S+D R+ GAVT VKDQG C CWAFS+V +VEGI I TG L+SLSEQEL+DCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 180 TGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKD-ENDAAAATISGF 238
T D GC G MD AFE+IKNN GL TEA YP+ G C + +N I G
Sbjct: 61 TADND-GCQGGLMDNAFEYIKNNGGLITEAAYPYRAA-RGTCNVARAAQNSPVVVHIDGH 118
Query: 239 KFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGAS 298
+ VPAN+E+ L + VA+QPVSV++++SG F FYS G+ + ECGT++DHGV +GYG +
Sbjct: 119 QDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVF-TGECGTELDHGVAVVGYGVA 177
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
DG YW VKNSWG WGE GY+R++++ GA G CGIAM ASYP
Sbjct: 178 EDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 151/222 (68%), Gaps = 8/222 (3%)
Query: 122 DVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTG 181
D+P S+D RENGAV PVK+QG C CWAFS+VAAVEGI +I TG L+SLSEQ+LVDC T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 182 SFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ GC G M+ AF+FI NN G+ +E YP+ G D G C +T +A +I ++ V
Sbjct: 62 --NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD-GICNSTV---NAPVVSIDSYENV 115
Query: 242 PANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDG 301
P++NEQ+L + VA+QPVSV++D++G FQ Y SGI + C +H +T +GYG +D
Sbjct: 116 PSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIF-TGSCNISANHALTVVGYGTEND- 173
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
+W+VKNSWG WGE GY+R +R + +G CGI ASYP
Sbjct: 174 KDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYP 215
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 145/221 (65%), Gaps = 6/221 (2%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R +GAV +KDQG C CWAFS++AAVEGI KI TG L+SLSEQELVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
RGC G M F+FI NN G+ TEA+YP+ + G C D +I ++ VP
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEE-GQCNL--DLQQEKYVSIDTYENVP 117
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE AL VA QPVSV+++++GY FQ YSSGI CGT +DH VT +GYG + G
Sbjct: 118 YNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTG-PCGTAVDHAVTIVGYG-TEGGI 175
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
YW+VKNSWGT WGE GY+RIQR VG G CGIA ASYP
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYP 215
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/221 (53%), Positives = 144/221 (65%), Gaps = 6/221 (2%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R +GAV +KDQG C WAFS++AAVEGI KI TG L+SLSEQELVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
RGC G M F+FI NN G+ TEA+YP+ + G C D +I ++ VP
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEE-GQCNL--DLQQEKYVSIDTYENVP 117
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE AL VA QPVSV+++++GY FQ YSSGI CGT +DH VT +GYG + G
Sbjct: 118 YNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTG-PCGTAVDHAVTIVGYG-TEGGI 175
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
YW+VKNSWGT WGE GY+RIQR VG G CGIA ASYP
Sbjct: 176 DYWIVKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYP 215
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 9/222 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+PS +D R GAV +K+Q C CWAFS+VAAVE I KI TG+L+SLSEQELVDCDT S
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
GC G M+ AF++I N G+ T+ +YP+ G+CK + +I+GF+ V
Sbjct: 61 --HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ-GSCKPYRLR----VVSINGFQRVT 113
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE AL VA QPVSV+++++G FQ YSSGI + CGT +HGV +GYG S G
Sbjct: 114 RNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIF-TGPCGTAQNHGVVIVGYGTQS-GK 171
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
YW+V+NSWG WG GY+ ++R V + G CGIA + SYPT
Sbjct: 172 NYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 140/221 (63%), Gaps = 6/221 (2%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+PS +D R GAV +K QG+C CWAFS++A VEGI KI TG L+SLSEQEL+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
RGC G + F+FI NN G+ TE +YP+ D G C D + TI ++ VP
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQD-GECNV--DLQNEKYVTIDTYENVP 117
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE AL V QPVSV++D++G F+ YSSGI CGT IDH VT +GYG + G
Sbjct: 118 YNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTG-PCGTAIDHAVTIVGYG-TEGGI 175
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
YW+VKNSW T WGE GY+RI R VG G CGIA M SYP
Sbjct: 176 DYWIVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYP 215
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 144/220 (65%), Gaps = 12/220 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE GAVTPVK+Q C CWAFS+VA +EGI KI TG+L+SLSEQEL+DC+ S
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRS- 60
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
GC G T+ +++ +NG+ TE +YP+ G C+ + I+G+K+VPA
Sbjct: 61 -HGCDGGYQTTSLQYVV-DNGVHTEREYPYEKKQ-GRCRA--KDKKGPKVYITGYKYVPA 115
Query: 244 NNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTK 303
N+E +L+Q +A+QPVSV DS G FQFY GI + CGT+ DH VTA+GYG +
Sbjct: 116 NDEISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEG-PCGTNTDHAVTAVGYGKT----- 169
Query: 304 YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
Y L+KNSWG WGE GY+RI+R G +G CG+ + +P
Sbjct: 170 YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFP 209
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 168/319 (52%), Gaps = 26/319 (8%)
Query: 36 MLKMHEQWMAQHGLVYADEAEKAETAYDFR----------RQYRGYKLAVNKFADLTNDE 85
++++ WM H Y + EK F+ ++ Y L +N+FADL+NDE
Sbjct: 18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDE 77
Query: 86 FRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCN 145
F Y G +I + + N + ++P ++D R+ GAVTPV+ QG C
Sbjct: 78 FNEKYVG--------SLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCG 129
Query: 146 CCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGL 205
CWAFS+VA VEGI KI TGKL+ LSEQELVDC+ S GC G A E++ NG+
Sbjct: 130 SCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS--HGCKGGYPPYALEYVA-KNGI 186
Query: 206 TTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSS 265
+ YP+ G C+ + SG V NNE L+ +A QPVSV ++S
Sbjct: 187 HLRSKYPYKAKQ-GTCRAK--QVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESK 243
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
G FQ Y GI + CGT +D VTA+GYG S L+KNSWGT WGE GY+RI+R
Sbjct: 244 GRPFQLYKGGIFEG-PCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKR 301
Query: 326 EVGAQEGACGIAMMASYPT 344
G G CG+ + YPT
Sbjct: 302 APGNSPGVCGLYKSSYYPT 320
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 141/220 (64%), Gaps = 8/220 (3%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D R GAVTPVK+QG C WAFS++A VEGI KI TG L+ LSEQELVDCD S+
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
GC G T+ +++ NNG+ T YP+ Y C+ T + I+G+K VP+
Sbjct: 62 --GCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQY-KCRAT--DKPGPKVKITGYKRVPS 115
Query: 244 NNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTK 303
N E + + +A+QP+SV +++ G FQ Y SG+ CGT +DH VTA+GYG +SDG
Sbjct: 116 NXETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDG-PCGTKLDHAVTAVGYG-TSDGKN 173
Query: 304 YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
Y ++KNSWG WGE GY+R++R+ G +G CG+ + YP
Sbjct: 174 YIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 170/322 (52%), Gaps = 37/322 (11%)
Query: 42 QWMAQHGLVYADEAEKAETAY-------------DFRRQYRGYKLAVNKFADLTNDEFRS 88
+W A H +Y E A ++R + +A+N F D+T++EFR
Sbjct: 10 KWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 69
Query: 89 MYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCW 148
+ G + P + P S+D RE G VTPVK+QG C W
Sbjct: 70 VMNG----------LQNRKPRKGKVFQ-EPLFYEAPRSVDWREKGYVTPVKNQGQCGSSW 118
Query: 149 AFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTE 208
AFS+ A+EG +TG+L+SLSEQ LVDC + GC G MD AF+++++N GL +E
Sbjct: 119 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSE 178
Query: 209 ADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVAD-QPVSVSIDSSGY 267
YP+ + ++ K + A +GF +P E+ALM+ VA P+SV+ID+
Sbjct: 179 ESYPYEATE----ESCKYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHE 233
Query: 268 MFQFYSSGIIKSEECGT-DIDHGVTAIGYG---ASSDGTKYWLVKNSWGTGWGEGGYVRI 323
F FY GI +C + D+DHGV +GYG SDG KYWLVKNSWG WG GGYV++
Sbjct: 234 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKM 293
Query: 324 QREVGAQEGACGIAMMASYPTV 345
++ + CGIA ASYPTV
Sbjct: 294 AKD---RRNHCGIASAASYPTV 312
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 172/322 (53%), Gaps = 37/322 (11%)
Query: 42 QWMAQHGLVYADEAEKAETAY-------------DFRRQYRGYKLAVNKFADLTNDEFRS 88
+W A H +Y E A ++R + +A+N F D+T++EFR
Sbjct: 14 KWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 73
Query: 89 MYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCW 148
+ G+ QN+ + + P S+D RE G VTPVK+QG C W
Sbjct: 74 VMNGF--QNRKP---------RKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSXW 122
Query: 149 AFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTE 208
AFS+ A+EG +TG+L+SLSEQ LVDC + GC G MD AF+++++N GL +E
Sbjct: 123 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSE 182
Query: 209 ADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVAD-QPVSVSIDSSGY 267
YP+ + ++ K + A +GF +P E+ALM+ VA P+SV+ID+
Sbjct: 183 ESYPYEATE----ESCKYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHE 237
Query: 268 MFQFYSSGIIKSEECGT-DIDHGVTAIGYG---ASSDGTKYWLVKNSWGTGWGEGGYVRI 323
F FY GI +C + D+DHGV +GYG SD KYWLVKNSWG WG GGYV++
Sbjct: 238 SFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 297
Query: 324 QREVGAQEGACGIAMMASYPTV 345
++ + CGIA ASYPTV
Sbjct: 298 AKD---RRNHCGIASAASYPTV 316
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+PS +D R GAV +K QG+C WAFS++A VEGI KI +G L+SLSEQEL+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
RGC G + F+FI N+ G+ TE +YP+ D G C D TI ++ VP
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQD-GDCDVAL--QDQKYVTIDTYENVP 117
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE AL V QPVSV++D++G F+ Y+SGI CGT +DH + +GYG + G
Sbjct: 118 YNNEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTG-PCGTAVDHAIVIVGYG-TEGGV 175
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
YW+VKNSW T WGE GY+RI R VG G CGIA M SYP
Sbjct: 176 DYWIVKNSWDTTWGEEGYMRILRNVGG-AGTCGIATMPSYP 215
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 160/277 (57%), Gaps = 24/277 (8%)
Query: 74 AVNKFADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSRENG 133
A+N F D+T++EFR + G+ QN+ + + P S+D RE G
Sbjct: 1 AMNAFGDMTSEEFRQVMNGF--QNRKP---------RKGKVFQEPLFYEAPRSVDWREKG 49
Query: 134 AVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMD 193
VTPVK+QG C CWAFS+ A+EG +TG+L+SLSEQ LVDC + GC G MD
Sbjct: 50 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMD 109
Query: 194 TAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVV 253
AF+++++N GL +E YP+ + ++ K + A +GF +P E+ALM+ V
Sbjct: 110 YAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDAGFVDIP-KQEKALMKAV 164
Query: 254 AD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG---ASSDGTKYWLVK 308
A P+SV+ID+ F FY GI +C + D+DHGV +GYG SD KYWLVK
Sbjct: 165 ATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVK 224
Query: 309 NSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
NSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 225 NSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 258
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 169/319 (52%), Gaps = 29/319 (9%)
Query: 36 MLKMHEQWMAQHGLVYADEAEKAETAYDFR----------RQYRGYKLAVNKFADLTNDE 85
++++ E WM +H +Y + EK F+ ++ Y L +N FAD++NDE
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDE 121
Query: 86 FRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCN 145
F+ Y G N + +S + N ++P +D R+ GAVTPVK+QG C
Sbjct: 122 FKEKYTGSIAGNYTTTELSYEEV-------LNDGDVNIPEYVDWRQKGAVTPVKNQGSCG 174
Query: 146 CCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGL 205
WAFS+V+ +E I KI TG L SEQEL+DCD S+ GC G +A + + G+
Sbjct: 175 SAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSY--GCNGGYPWSALQLVA-QYGI 231
Query: 206 TTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSS 265
YP+ G C++ E AA G + V NE AL+ +A+QPVSV ++++
Sbjct: 232 HYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAA 288
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
G FQ Y GI CG +DH V A+GYG + Y L++NSWGTGWGE GY+RI+R
Sbjct: 289 GKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKR 342
Query: 326 EVGAQEGACGIAMMASYPT 344
G G CG+ + YP
Sbjct: 343 GTGNSYGVCGLYTSSFYPV 361
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 200 bits (509), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 142/224 (63%), Gaps = 20/224 (8%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C CWAFS+V+ VE I +I TG L+SLSEQELVDCD
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATIS--GFKF 240
+ GC G A+++I NN G+ T+A+YP+ K + AA+ +S G+
Sbjct: 60 -NHGCLGGAFVFAYQYIINNGGIDTQANYPY--------KAVQGPCQAASKVVSIDGYNG 110
Query: 241 VPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
VP NE AL Q VA QP +V+ID+S FQ YSSGI S CGT ++HGVT +GY A+
Sbjct: 111 VPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIF-SGPCGTKLNHGVTIVGYQAN-- 167
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
YW+V+NSWG WGE GY+R+ R G G CGIA + YPT
Sbjct: 168 ---YWIVRNSWGRYWGEKGYIRMLRVGGC--GLCGIARLPYYPT 206
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 144/224 (64%), Gaps = 12/224 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 59
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G M AF++++ N G+ +E YP+VG + ++ AA G++ +P
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE----ESCMYNPTGKAAKCRGYREIPE 115
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDG 301
NE+AL + VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG S G
Sbjct: 116 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-ESKG 174
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
K+W++KNSWG WG GGY+++ R + ACGIA +AS+P +
Sbjct: 175 NKHWIIKNSWGENWGMGGYIKMARN---KNNACGIANLASFPKM 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 159/277 (57%), Gaps = 20/277 (7%)
Query: 71 YKLAVNKFADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSR 130
Y+LA+N D+T++E G + S ++ + P S+D R
Sbjct: 56 YELAMNHLGDMTSEEVVQKMTGLK--------VPLSHSRSNDTLYIPEWEGRAPDSVDYR 107
Query: 131 ENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVG 190
+ G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S + GC G
Sbjct: 108 KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDGCGGG 165
Query: 191 RMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALM 250
M AF++++ N G+ +E YP+VG + ++ AA G++ +P NE+AL
Sbjct: 166 YMTNAFQYVQKNRGIDSEDAYPYVGQE----ESCMYNPTGKAAKCRGYREIPEGNEKALK 221
Query: 251 QVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDGTKYWLVK 308
+ VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG G K+W++K
Sbjct: 222 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-GNKHWIIK 280
Query: 309 NSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
NSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 281 NSWGENWGNKGYILMARN---KNNACGIANLASFPKM 314
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 143/228 (62%), Gaps = 12/228 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D R+ G VTPVK+Q C CWAFS+ A+EG +TGKL+SLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
++GC G M AF+++K N GL +E YP+V D CK + EN A T GF V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE-ICK-YRPENSVAQDT--GFTVVA 116
Query: 243 ANNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGY---GA 297
E+ALM+ VA P+SV++D+ FQFY SGI +C + ++DHGV +GY GA
Sbjct: 117 PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGA 176
Query: 298 SSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+SD +KYWLVKNSWG WG GYV+I ++ + CGIA ASYP V
Sbjct: 177 NSDNSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYPNV 221
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 137/222 (61%), Gaps = 16/222 (7%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C CWAFS+V+ VE I +I TG L+SLSEQ+LVDC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G A+++I +N G+ TEA+YP+ G C+ K I G+K VP
Sbjct: 60 -NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQ-GPCRAAKK-----VVRIDGYKGVP 112
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NE AL + VA QP V+ID+S FQ Y SGI S CGT ++HGV +GY
Sbjct: 113 HCNENALKKAVASQPSVVAIDASSKQFQHYKSGIF-SGPCGTKLNHGVVIVGYWKD---- 167
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
YW+V+NSWG WGE GY+R++R G G CGIA + YPT
Sbjct: 168 -YWIVRNSWGRYWGEQGYIRMKRVGGC--GLCGIARLPYYPT 206
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 143/230 (62%), Gaps = 7/230 (3%)
Query: 117 NSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELV 176
N +++P+ +D R G VTPVKDQ DC CWAFS+ A+EG +TGKL+SLSEQEL+
Sbjct: 1 NVLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATIS 236
DC ++ C+ G M+ AF+++ ++ G+ +E YP++ D C+ E I
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDE-ECRAQSCEK---VVKIL 116
Query: 237 GFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYG 296
GFK VP +E A+ +A PVS++I++ FQFY G+ + CGTD+DHGV +GYG
Sbjct: 117 GFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDA-SCGTDLDHGVLLVGYG 175
Query: 297 ASSDGTK-YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+ K +W++KNSWGTGWG GY+ + G +EG CG+ + AS+P +
Sbjct: 176 TDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKG-EEGQCGLLLDASFPVM 224
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 141/225 (62%), Gaps = 12/225 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
P S+D R+ G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--S 58
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G M AF++++ N G+ +E YP+VG D ++ AA G++ +P
Sbjct: 59 ENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD----ESCMYNPTGKAAKCRGYREIP 114
Query: 243 ANNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSD 300
NE+AL + VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG
Sbjct: 115 EGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQK- 173
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G K+W++KNSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 174 GNKHWIIKNSWGESWGNKGYILMARN---KNNACGIANLASFPKM 215
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 142/228 (62%), Gaps = 12/228 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D R+ G VTPVK+Q C WAFS+ A+EG +TGKL+SLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
++GC G M AF+++K N GL +E YP+V D CK + EN A T GF V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE-ICK-YRPENSVAQDT--GFTVVA 116
Query: 243 ANNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGY---GA 297
E+ALM+ VA P+SV++D+ FQFY SGI +C + ++DHGV +GY GA
Sbjct: 117 PGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGA 176
Query: 298 SSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+SD +KYWLVKNSWG WG GYV+I ++ + CGIA ASYP V
Sbjct: 177 NSDNSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYPNV 221
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 12/224 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D R+ G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 59
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G M AF++++ N G+ +E YP+VG + ++ AA G++ +P
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE----ESCMYNPTGKAAKCRGYREIPE 115
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDG 301
NE+AL + VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG G
Sbjct: 116 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-G 174
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
K+W++KNSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 175 NKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFPKM 215
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 12/224 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D R+ G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G M AF++++ N G+ +E YP+VG + ++ AA G++ +P
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE----ESCMYNPTGKAAKCRGYREIPE 117
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDG 301
NE+AL + VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG G
Sbjct: 118 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-G 176
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
K+W++KNSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 177 NKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFPKM 217
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 12/224 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D R+ G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SE 58
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G M AF++++ N G+ +E YP+VG + ++ AA G++ +P
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE----ESCMYNPTGKAAKCRGYREIPE 114
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDG 301
NE+AL + VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG G
Sbjct: 115 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-G 173
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
K+W++KNSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 174 NKHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFPKM 214
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 141/229 (61%), Gaps = 13/229 (5%)
Query: 122 DVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTG 181
+ P S+D RE G VTPVK+QG C CWAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 182 SFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDI 116
Query: 242 PANNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG--- 296
P E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 P-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 175
Query: 297 ASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 176 TESDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 221
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 140/227 (61%), Gaps = 13/227 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C CWAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDAGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG---AS 298
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 176
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 177 SDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 140/227 (61%), Gaps = 13/227 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C CWAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG---AS 298
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 176
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 177 SDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 130/222 (58%), Gaps = 16/222 (7%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R GAV P+K+QG C CWAFS+V VE I +I TG L+SLSEQ+LVDC
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCS--K 58
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G D A+++I N G+ TEA+YP+ G C+ K I G K VP
Sbjct: 59 KNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQ-GPCRAAKK-----VVRIDGCKGVP 112
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NE AL VA QP V+ID+S FQ Y GI + CGT ++HGV +GYG
Sbjct: 113 QCNENALKNAVASQPSVVAIDASSKQFQHYKGGIF-TGPCGTKLNHGVVIVGYGKD---- 167
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
YW+V+NSWG WGE GY R++R G G CGIA + YPT
Sbjct: 168 -YWIVRNSWGRHWGEQGYTRMKRVGGC--GLCGIARLPFYPT 206
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 140/224 (62%), Gaps = 12/224 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D R+ G VTPVK+QG C CWAFSSV A+EG K TG L++L+ Q LVDC S
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCV--SE 59
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G M AF++++ N G+ +E YP+VG D ++ AA G++ +P
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD----ESCMYNPTGKAAKCRGYREIPE 115
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDG 301
NE AL + VA PVSV+ID+S FQFYS+G+ E C +D ++H V A+GYG + G
Sbjct: 116 GNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQA-G 174
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
K+W++KNSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 175 NKHWIIKNSWGESWGNAGYILMARN---KNNACGIANLASFPKM 215
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 140/222 (63%), Gaps = 12/222 (5%)
Query: 126 SMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDR 185
S+D R+ G VTPVK+QG C CWAFSSV A+EG K +TGKL++LS Q LVDC S +
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SEND 59
Query: 186 GCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANN 245
GC G M AF++++ N G+ +E YP+VG + ++ AA G++ +P N
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE----ESCMYNPTGKAAKCRGYREIPEGN 115
Query: 246 EQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSDGTK 303
E+AL + VA PVSV+ID+S FQFYS G+ E C +D ++H V A+GYG G K
Sbjct: 116 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK-GNK 174
Query: 304 YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+W++KNSWG WG GY+ + R + ACGIA +AS+P +
Sbjct: 175 HWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFPKM 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 140/229 (61%), Gaps = 13/229 (5%)
Query: 122 DVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTG 181
+ P S+D RE G VTPVK+QG C WAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 182 SFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDI 116
Query: 242 PANNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG--- 296
P E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 P-KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 175
Query: 297 ASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 176 TESDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 221
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 135/221 (61%), Gaps = 8/221 (3%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D R GAVTPVK QG C CWAFS+VA VEGI KI+TG L+ LSEQELVDCD S
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G T+ +++ NG+ A YP++ C+ ++ +G V
Sbjct: 61 Y--GCNRGYQSTSLQYVA-QNGIHLRAKYPYIAKQQ-TCRA--NQVGGPKVKTNGVGRVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
+NNE +L+ +A QPVSV ++S+G FQ Y GI + CGT +DH VTA+GYG S
Sbjct: 115 SNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEG-SCGTKVDHAVTAVGYGKSGGKG 173
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
L+KNSWG GWGE GY+RI+R G G CG+ + YP
Sbjct: 174 YI-LIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYP 213
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 139/227 (61%), Gaps = 13/227 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C WAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG---AS 298
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 176
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 177 SDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 134/225 (59%), Gaps = 12/225 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P+S+D R+ GAVT VKDQG C CWAF + A+EGI I TG+L+S+SEQ++VDCDT
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
G D AF ++ N G+ ++A+YP+ G D G C D N AA I G+ VP
Sbjct: 62 XX--XGGDADDAFRWVITNGGIASDANYPYTGVD-GTC----DLNKPIAARIDGYTNVP- 113
Query: 244 NNEQALMQVVADQPVSVSIDSSGYMFQFYSS-GIIKSEECGTD---IDHGVTAIGYGASS 299
N+ AL+ VA QPVSV+I +S FQ Y+ GI C D +DH V +GYG++
Sbjct: 114 NSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNG 173
Query: 300 DGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
YW+VKNSWGT WG GY+ I+R +G C I SYPT
Sbjct: 174 TNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 139/227 (61%), Gaps = 13/227 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C WAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG---AS 298
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 176
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 177 SDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 156/281 (55%), Gaps = 28/281 (9%)
Query: 71 YKLAVNKFADLTNDEFRSMYAGY----DWQNQNSPVISTSDPDASSPMDANSTVTDVPSS 126
Y L +N D+T++E S+ + WQ + S+P+ +P S
Sbjct: 57 YDLGMNHLGDMTSEEVMSLMSSLRVPSQWQRN---ITYKSNPNRI-----------LPDS 102
Query: 127 MDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF-DR 185
+D RE G VT VK QG C WAFS+V A+E K++TGKL+SLS Q LVDC T + ++
Sbjct: 103 VDWREKGCVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNK 162
Query: 186 GCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANN 245
GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +P
Sbjct: 163 GCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTELPYGR 218
Query: 246 EQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKY 304
E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +G +Y
Sbjct: 219 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKEY 277
Query: 305 WLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
WLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 278 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 315
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 131/222 (59%), Gaps = 8/222 (3%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P ++D R+ GAVTPV+ QG C CWAFS+VA VEGI KI TGKL+ LSEQELVDC+ S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
GC G A E++ NG+ + YP+ G C+ + SG V
Sbjct: 61 H--GCKGGYPPYALEYVA-KNGIHLRSKYPYKAKQ-GTCRA--KQVGGPIVKTSGVGRVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE L+ +A QPVSV ++S G FQ Y GI + CGT +DH VTA+GYG S
Sbjct: 115 PNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEG-PCGTKVDHAVTAVGYGKSGGKG 173
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
L+KNSWGT WGE GY+RI+R G G CG+ + YPT
Sbjct: 174 YI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 139/227 (61%), Gaps = 13/227 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C WAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDAGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYG---AS 298
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 176
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SD KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 177 SDDNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 220
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 131/222 (59%), Gaps = 8/222 (3%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P ++D R+ GAVTPV+ QG C CWAFS+VA VEGI KI TGKL+ LSEQELVDC+ S
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
GC G A E++ NG+ + YP+ G C+ + SG V
Sbjct: 61 H--GCKGGYPPYALEYVA-KNGIHLRSKYPYKAKQ-GTCRA--KQVGGPIVKTSGVGRVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNE L+ +A QPVSV ++S G FQ Y GI + CGT ++H VTA+GYG S
Sbjct: 115 PNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEG-PCGTKVEHAVTAVGYGKSGGKG 173
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
L+KNSWGT WGE GY+RI+R G G CG+ + YPT
Sbjct: 174 YI-LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 116
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 175
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 117
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 176
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 116
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 175
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 119
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 178
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 220
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 117
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 176
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 218
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 12/222 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P+S+D R+ GAVTPV++QG C CW FSSVAAVEGI KI TG+L+SLSEQEL+DC+ S
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G A +++ N+G+ YP+ G C+ ++ + G VP
Sbjct: 61 Y--GCRGGFPLYALQYVA-NSGIHLRQYYPYEGVQR-QCRASQAK--GPKVKTDGVGRVP 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NNEQAL+Q +A QPVS+ +++ G FQ Y GI + CGT IDH V A+GY G
Sbjct: 115 RNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIF-AGPCGTSIDHAVAAVGY-----GN 168
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGEGGY+RI+R G +GACG+ + +PT
Sbjct: 169 DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 137/227 (60%), Gaps = 14/227 (6%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAA--AATISGFK 239
+ ++GC G M TAF++I +N G+ ++A YP+ D K + D+A AAT +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD------QKCQYDSAYRAATCRKYT 114
Query: 240 FVPANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGAS 298
+P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG
Sbjct: 115 ELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-D 173
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 174 LNGKEYWLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 137/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL++LS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 116
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 175
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C CWAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT + +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCRKYTEL 116
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 175
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 176 GKEYWLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 129/222 (58%), Gaps = 12/222 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C CWAFS+V +EGI KI TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G +A + + G+ YP+ G C++ E AA G + V
Sbjct: 61 Y--GCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NE AL+ +A+QPVSV ++++G FQ Y GI CG +DH V A+GYG +
Sbjct: 115 PYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN---- 169
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGE GY+RI+R G G CG+ + YP
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C WAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 116
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 175
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C WAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 117
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 118 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 176
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 177 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 218
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C WAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + + ++ AAT S + +
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMD----QKCQYDSKYRAATCSKYTEL 118
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 119 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 177
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 178 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 219
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 10/225 (4%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P S+D RE G VT VK QG C WAFS+V A+E K++TGKL+SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 183 F-DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
+ ++GC G M TAF++I +N G+ ++A YP+ D + ++ AAT S + +
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDL----KCQYDSKYRAATCSKYTEL 116
Query: 242 PANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSD 300
P E L + VA++ PVSV +D+ F Y SG+ C +++HGV +GYG +
Sbjct: 117 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLN 175
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G +YWLVKNSWG +GE GY+R+ R G CGIA SYP +
Sbjct: 176 GKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYPEI 217
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 128/222 (57%), Gaps = 12/222 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C CWAFS+V +EGI KI TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G +A + + G+ YP+ G C++ E AA G + V
Sbjct: 61 Y--GCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
N+ AL+ +A+QPVSV + ++G FQ Y GI CG +DH V A+GYG +
Sbjct: 115 PYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN---- 169
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGE GY+RI+R G G CG+ + YP
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 127/221 (57%), Gaps = 12/221 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P +D R+ GAVTPVK+QG C CWAFS+V +EGI KI TG L SEQEL+DCD S+
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
GC G +A + + G+ YP+ G C++ E AA G + V
Sbjct: 62 --GCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQP 115
Query: 244 NNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTK 303
N+ AL+ +A+QPVSV + ++G FQ Y GI CG +DH V A+GYG +
Sbjct: 116 YNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN----- 169
Query: 304 YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGE GY+RI+R G G CG+ + YP
Sbjct: 170 YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 169/301 (56%), Gaps = 24/301 (7%)
Query: 49 LVYADEAEK-AETAYDFRRQYRGYKLAVNKFADLTNDEFRSMYAGYDWQNQNSPVISTSD 107
L++ D K AE F + Y A+N+F D++ +EF + Q P
Sbjct: 49 LIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQKPKHP------ 102
Query: 108 PDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKL 167
+ M S+ + +S+D R N AV+ VKDQG C W+FS+ AVEG ++ G+L
Sbjct: 103 --ENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRL 159
Query: 168 MSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGN-DYGACKTTKD 226
SLSEQ L+DC + + GC G MD+AF +I ++ G+ +E+ YP+ DY C+
Sbjct: 160 TSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI-HDYGIMSESAYPYEAQGDY--CRF--- 213
Query: 227 ENDAAAATISGFKFVPANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECG-T 284
++ + T+SG+ +P+ +E +L V PV+V+ID++ + QFYS G+ + C +
Sbjct: 214 DSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDEL-QFYSGGLFYDQTCNQS 272
Query: 285 DIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
D++HGV +GYG S +G YW++KNSWG+GWGE GY R R G CGIA ASYP
Sbjct: 273 DLNHGVLVVGYG-SDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN---CGIATAASYPA 328
Query: 345 V 345
+
Sbjct: 329 L 329
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 128/222 (57%), Gaps = 12/222 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C WAFS+V +EGI KI TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G +A + + G+ YP+ G C++ E AA G + V
Sbjct: 61 Y--GCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NE AL+ +A+QPVSV ++++G FQ Y GI CG +DH V A+GYG +
Sbjct: 115 PYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN---- 169
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGE GY+RI+R G G CG+ + YP
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 128/222 (57%), Gaps = 12/222 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C WAFS+V +EGI KI TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G +A + + G+ YP+ G C++ E AA G + V
Sbjct: 61 Y--GCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
NE AL+ +A+QPVSV ++++G FQ Y GI CG +DH V A+GYG +
Sbjct: 115 PYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN---- 169
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGE GY+RI+R G G CG+ + YP
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 136/224 (60%), Gaps = 10/224 (4%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C +AFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDVGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGI-IKSEECGTDIDHGVTAIGYGASSDG 301
E+ALM+ VA P+SV+ID+ F FY GI S+ + ++H + +GYG S+
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNN 176
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 177 QKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 217
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 127/222 (57%), Gaps = 12/222 (5%)
Query: 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
+P +D R+ GAVTPVK+QG C WAFS+V +EGI KI TG L SEQEL+DCD S
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G +A + + G+ YP+ G C++ E AA G + V
Sbjct: 61 Y--GCNGGYPWSALQLVA-QYGIHYRNTYPYEGVQR-YCRSR--EKGPYAAKTDGVRQVQ 114
Query: 243 ANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGT 302
N+ AL+ +A+QPVSV + ++G FQ Y GI CG +DH V A+GYG +
Sbjct: 115 PYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG-PCGNKVDHAVAAVGYGPN---- 169
Query: 303 KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344
Y L+KNSWGTGWGE GY+RI+R G G CG+ + YP
Sbjct: 170 -YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 155/277 (55%), Gaps = 21/277 (7%)
Query: 71 YKLAVNKFADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSR 130
Y L +N+F D+T +EF++ Y ++ S ++S P +AN+ VP +D R
Sbjct: 49 YTLGLNQFTDMTFEEFKAKYLTE--MSRASDILS-----HGVPYEANNRA--VPDKIDWR 99
Query: 131 ENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVG 190
E+G VT VKDQG+C WAFS+ +EG +S SEQ+LVDC + GC G
Sbjct: 100 ESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGG 159
Query: 191 RMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALM 250
M+ A++++K GL TE+ YP+ + G C+ K A ++GF V + +E L
Sbjct: 160 LMENAYQYLK-QFGLETESSYPYTAVE-GQCRYNK---QLGVAKVTGFYTVHSGSEVELK 214
Query: 251 QVV-ADQPVSVSIDSSGYMFQFYSSGIIKSEECG-TDIDHGVTAIGYGASSDGTKYWLVK 308
+V A+ P +V++D F Y SGI +S+ C ++H V A+GYG + GT YW+VK
Sbjct: 215 NLVGAEGPAAVAVDVES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYG-TQGGTDYWIVK 272
Query: 309 NSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
NSWG WGE GY+R+ R G CGIA +AS P V
Sbjct: 273 NSWGLSWGERGYIRMVRNRG---NMCGIASLASLPMV 306
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 126/230 (54%), Gaps = 12/230 (5%)
Query: 122 DVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTG 181
D P S D + G +T VK QG C WAFS+ A+E I TG L+SLSEQEL+DC
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 182 SFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDEN----DAAAATISG 237
S GC G +FE++ + G+ +EADYP+ D G CK + ++ D I
Sbjct: 61 S--EGCYNGWHYQSFEWVVKHGGIASEADYPYKARD-GKCKANEIQDKVTIDNYGVQILS 117
Query: 238 FKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTD--IDHGVTAIGY 295
+ + E +L V +QP+SVSID+ F FYS GI C + I+H V +GY
Sbjct: 118 NESTESEAESSLQSFVLEQPISVSIDAKD--FHFYSGGIYDGGNCSSPYGINHFVLIVGY 175
Query: 296 GASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G S DG YW+ KNSWG WG GY+RIQR G G CG+ ASYP +
Sbjct: 176 G-SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/302 (36%), Positives = 159/302 (52%), Gaps = 30/302 (9%)
Query: 56 EKAETAYDFRRQYR----GYKLAVNKFADLTNDEFRSMYAGY----DWQNQNSPVISTSD 107
+K ET + +YR Y L VN F D+T +E ++ G D P+ + D
Sbjct: 48 KKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTRED 107
Query: 108 PDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKL 167
+ N++V P+S D R+ G V+PVK+QG C WAFSS A+E KI G
Sbjct: 108 ------LGLNASVR-YPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAG 160
Query: 168 M--SLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTK 225
S+SEQ+LVDC + GC+ G M+ AF ++ N G+ +E YP+ D G C
Sbjct: 161 YDSSVSEQQLVDCVPNAL--GCSGGWMNDAFTYVAQNGGIDSEGAYPYEMAD-GNCHYDP 217
Query: 226 DENDAAAATISGFKFVPANNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGT 284
++ AA +SG+ ++ +E L +VA + PV+V+ D+ F YS G+ + C T
Sbjct: 218 NQ---VAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADD-PFGSYSGGVYYNPTCET 273
Query: 285 D-IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
+ H V +GYG + +G YWLVKNSWG GWG GY +I R CGIA +AS P
Sbjct: 274 NKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGLDGYFKIARNANNH---CGIAGVASVP 329
Query: 344 TV 345
T+
Sbjct: 330 TL 331
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 124/225 (55%), Gaps = 15/225 (6%)
Query: 124 PSSMDSRENGA-VTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182
P SMD R+ G V+PVK+QG C CW FS+ A+E I TGK++SL+EQ+LVDC
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVP 242
+ GC G AFE+I+ N G+ E YP+ G D K + D A A + +
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD----DHCKFQPDKAIAFVKDVANIT 117
Query: 243 ANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECGT---DIDHGVTAIGYGAS 298
N+E+A+++ VA PVS + + + F Y GI S C ++H V A+GYG
Sbjct: 118 MNDEEAMVEAVALYNPVSFAFEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG-E 175
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
+G YW+VKNSWG WG GY I+R + CG+A ASYP
Sbjct: 176 ENGIPYWIVKNSWGPQWGMNGYFLIER----GKNMCGLAACASYP 216
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 129/207 (62%), Gaps = 15/207 (7%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P+++D RE GAVTPVKDQG C CWAFS++ +EG ++ L+SLSEQ LV CDT
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT--I 59
Query: 184 DRGCTVGRMDTAFEFIKNNNG--LTTEADYPFV-GN-DYGACKTTKDENDAAAATISGFK 239
D GC G MD AF +I N+NG + TEA YP+V GN + C+ E AA I+
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAA---ITDHV 116
Query: 240 FVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGAS 298
+P + + + + P+++++D++ +M Y+ GI+ S C ++ +DHGV +GY +
Sbjct: 117 DLPQDEDAIAAYLAENGPLAIAVDATSFM--DYNGGILTS--CTSEQLDHGVLLVGYNDA 172
Query: 299 SDGTKYWLVKNSWGTGWGEGGYVRIQR 325
S+ YW++KNSW WGE GY+RI++
Sbjct: 173 SN-PPYWIIKNSWSNMWGEDGYIRIEK 198
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 7/178 (3%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C CWAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYGASS 299
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG S
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 118/205 (57%), Gaps = 11/205 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P+++D R GAVT VKDQG C CWAFS++ VE + L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KT 59
Query: 184 DRGCTVGRMDTAFEFI--KNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
D GC+ G M+ AFE+I +NN + TE YP+ + G ATI+G +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGE-GISPPCTTSGHTVGATITGHVEL 118
Query: 242 PANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSD 300
P + Q + + PV+V++D+S +M Y+ G++ S C ++ +DHGV +GY S+
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDASSWM--TYTGGVMTS--CVSEQLDHGVLLVGYNDSA- 173
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQR 325
YW++KNSW T WGE GY+RI +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 118/205 (57%), Gaps = 11/205 (5%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P+++D R GAVT VKDQG C CWAFS++ VE + L +LSEQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KT 59
Query: 184 DRGCTVGRMDTAFEFI--KNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
D GC+ G M+ AFE+I +NN + TE YP+ + G ATI+G +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGE-GISPPCTTSGHTVGATITGHVEL 118
Query: 242 PANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSD 300
P + Q + + PV+V++D+S +M Y+ G++ S C ++ +DHGV +GY S+
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDASSWM--TYTGGVMTS--CVSEALDHGVLLVGYNDSA- 173
Query: 301 GTKYWLVKNSWGTGWGEGGYVRIQR 325
YW++KNSW T WGE GY+RI +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 15/207 (7%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P+++D R GAVT VKDQG C CWAFS++ VE + L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KT 59
Query: 184 DRGCTVGRMDTAFEFI--KNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
D GC+ G M+ AFE+I +NN + TE YP+ + G ATI+G +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGE-GISPPCTTSGHTVGATITGHVEL 118
Query: 242 PANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSD 300
P + Q + + PV+V++D+S +M Y+ G++ S C ++ +DHGV +GY +D
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDASSWM--TYTGGVMTS--CVSEQLDHGVLLVGY---ND 171
Query: 301 G--TKYWLVKNSWGTGWGEGGYVRIQR 325
G YW++KNSW T WGE GY+RI +
Sbjct: 172 GAAVPYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 15/207 (7%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P+++D R GAVT VKDQG C CWAFS++ VE + L +L+EQ LV CD
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KT 59
Query: 184 DRGCTVGRMDTAFEFI--KNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFV 241
D GC+ G M+ AFE+I +NN + TE YP+ + G ATI+G +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGE-GISPPCTTSGHTVGATITGHVEL 118
Query: 242 PANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTD-IDHGVTAIGYGASSD 300
P + Q + + PV+V++D+S +M Y+ G++ S C ++ +DHGV +GY +D
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDASSWM--TYTGGVMTS--CVSEQLDHGVLLVGY---ND 171
Query: 301 G--TKYWLVKNSWGTGWGEGGYVRIQR 325
G YW++KNSW T WGE GY+RI +
Sbjct: 172 GAAVPYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 107/178 (60%), Gaps = 7/178 (3%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P S+D RE G VTPVK+QG C WAFS+ A+EG +TG+L+SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
+ GC G MD AF+++++N GL +E YP+ + ++ K + A +GF +P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE----ESCKYNPKYSVANDTGFVDIP- 116
Query: 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGT-DIDHGVTAIGYGASS 299
E+ALM+ VA P+SV+ID+ F FY GI +C + D+DHGV +GYG S
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 18/230 (7%)
Query: 125 SSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFD 184
++ D R + VTPVKDQ +C CWAFSS+ +VE I KL++LSEQELVDC ++
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNY- 78
Query: 185 RGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPAN 244
GC G ++ AFE + G+ + DYP+V + C + I + VP N
Sbjct: 79 -GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDR---CTEKYGIKNYLSVPDN 134
Query: 245 NEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYG-------A 297
+ ++ + P+S+S+ S F FY GI ECG ++H V +G+G
Sbjct: 135 KLKEALRFLG--PISISVAVSD-DFAFYKEGIFDG-ECGDQLNHAVMLVGFGMKEIVNPL 190
Query: 298 SSDGTK--YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+ G K Y+++KNSWG WGE G++ I+ + CG+ A P +
Sbjct: 191 TKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 125 SSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFD 184
++ D R + VTPVKDQ +C WAFSS+ +VE I KL++LSEQELVDC ++
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNY- 77
Query: 185 RGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPAN 244
GC G ++ AFE + G+ + DYP+V + C + I + VP N
Sbjct: 78 -GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDR---CTEKYGIKNYLSVPDN 133
Query: 245 NEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYG-------A 297
+ ++ + P+S+S+ S F FY GI ECG ++H V +G+G
Sbjct: 134 KLKEALRFLG--PISISVAVSD-DFAFYKEGIFDG-ECGDQLNHAVMLVGFGMKEIVNPL 189
Query: 298 SSDGTK--YWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+ G K Y+++KNSWG WGE G++ I+ + CG+ A P +
Sbjct: 190 TKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 239
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 114/229 (49%), Gaps = 18/229 (7%)
Query: 126 SMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDR 185
+ D R +G VTPVKDQ C CWAFSSV +VE I L SEQELVDC +
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK--NN 80
Query: 186 GCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANN 245
GC G + AF+ + + GL ++ DYP+V N C + TI + +P +
Sbjct: 81 GCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNE---RYTIKSYVSIPDDK 137
Query: 246 EQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASS------ 299
+ ++ + P+S+SI +S F FY G ECG +H V +GYG
Sbjct: 138 FKEALRYLG--PISISIAASD-DFAFYRGGFYDG-ECGAAPNHAVILVGYGMKDIYNEDT 193
Query: 300 ---DGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+ Y+++KNSWG+ WGEGGY+ ++ + + C I A P +
Sbjct: 194 GRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL 242
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 120/226 (53%), Gaps = 18/226 (7%)
Query: 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSF 183
P D R GAVT VKDQG C CWAFS VEG + G L+SLSEQEL+DCD
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD--KM 59
Query: 184 DRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPA 243
D+ C G A+ IKN GL TE DY + G+ +C+ + ++ A +
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGH-MQSCQFSAEK----AKVYIQDSVELS 114
Query: 244 NNEQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEE--CGT-DIDHGVTAIGYGASS 299
NEQ L +A + P+SV+I++ G QFY GI + C IDH V +GYG S
Sbjct: 115 QNEQKLAAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRS 172
Query: 300 DGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
D +W +KNSWGT WGE GY + R GACG+ MAS V
Sbjct: 173 D-VPFWAIKNSWGTDWGEKGYYYLHRG----SGACGVNTMASSAVV 213
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 121 TDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDT 180
+VPS +D R VTP++ QG C CWAFS VAA E + LSEQELVDC +
Sbjct: 9 VNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCAS 68
Query: 181 GSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKF 240
GC + E+I+ NG+ E YP+V + C+ ++ + +
Sbjct: 69 ---QHGCHGDTIPRGIEYIQ-QNGVVEERSYPYVARE-QRCRRPNSQHYGISNYCQIYPP 123
Query: 241 VPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDID-HGVTAIGYGASS 299
+AL Q V + I FQ Y I + G + H V +GYG S+
Sbjct: 124 DVKQIREALTQTHTAIAVIIGIKDLR-AFQHYDGRTIIQHDNGYQPNYHAVNIVGYG-ST 181
Query: 300 DGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
G YW+V+NSW T WG+ GY G + + M+ YP V
Sbjct: 182 QGDDYWIVRNSWDTTWGDSGY-------GYFQAGNNLMMIEQYPYV 220
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 128/276 (46%), Gaps = 25/276 (9%)
Query: 74 AVNKFADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSRENG 133
A+N +DL+ DEF++ + + + + D ++ +A S + P+ +D R+
Sbjct: 45 AINHLSDLSLDEFKNRF----LMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMR 100
Query: 134 AVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMD 193
VTP++ QG C WAFS VAA E + + L+EQELVDC + GC +
Sbjct: 101 TVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCAS---QHGCHGDTIP 157
Query: 194 TAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGF-KFVPANN---EQAL 249
E+I+ +NG+ E+ Y +V + +C+ +A IS + + P N +AL
Sbjct: 158 RGIEYIQ-HNGVVQESYYRYVARE-QSCRRP----NAQRFGISNYCQIYPPNANKIREAL 211
Query: 250 MQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKN 309
Q + V + I + II+ + H V +GY +++ G YW+V+N
Sbjct: 212 AQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY-SNAQGVDYWIVRN 270
Query: 310 SWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
SW T WG+ GY G + M+ YP V
Sbjct: 271 SWDTNWGDNGY-------GYFAANIDLMMIEEYPYV 299
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 21/235 (8%)
Query: 115 DANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQE 174
+A S + P+ +D R+ VTP++ QG C CWAFS VAA E + + L+EQE
Sbjct: 2 NACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQE 61
Query: 175 LVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAAT 234
LVDC + GC + E+I+ +NG+ E+ Y +V + +C+ +A
Sbjct: 62 LVDCAS---QHGCHGDTIPRGIEYIQ-HNGVVQESYYRYVARE-QSCRRP----NAQRFG 112
Query: 235 ISGF-KFVPANN---EQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGV 290
IS + + P N +AL Q + V + I + II+ + H V
Sbjct: 113 ISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 291 TAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+GY +++ G YW+V+NSW T WG+ GY G + M+ YP V
Sbjct: 173 NIVGY-SNAQGVDYWIVRNSWDTNWGDNGY-------GYFAANIDLMMIEEYPYV 219
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 21/235 (8%)
Query: 115 DANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQE 174
+A S + P+ +D R+ VTP++ QG C CWAFS VAA E + + L+EQE
Sbjct: 2 NACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQE 61
Query: 175 LVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAAT 234
LVDC + GC + E+I+ +NG+ E+ Y +V + +C+ +A
Sbjct: 62 LVDCAS---QHGCHGDTIPRGIEYIQ-HNGVVQESYYRYVARE-QSCRRP----NAQRFG 112
Query: 235 ISGF-KFVPANN---EQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGV 290
IS + + P N +AL Q + V + I + II+ + H V
Sbjct: 113 ISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 291 TAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+GY +++ G YW+V+NSW T WG+ GY G + M+ YP V
Sbjct: 173 NIVGY-SNAQGVDYWIVRNSWDTNWGDNGY-------GYFAANIDLMMIEEYPYV 219
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 21/235 (8%)
Query: 115 DANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQE 174
+A S + P+ +D R+ VTP++ QG C WAFS VAA E + + L+EQE
Sbjct: 2 NACSINGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQE 61
Query: 175 LVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAAT 234
LVDC + GC + E+I+ +NG+ E+ Y +V + +C+ +A
Sbjct: 62 LVDCAS---QHGCHGDTIPRGIEYIQ-HNGVVQESYYRYVARE-QSCRRP----NAQRFG 112
Query: 235 ISGF-KFVPANN---EQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGV 290
IS + + P N +AL Q + V + I + II+ + H V
Sbjct: 113 ISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAV 172
Query: 291 TAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
+GY +++ G YW+V+NSW T WG+ GY G + M+ YP V
Sbjct: 173 NIVGY-SNAQGVDYWIVRNSWDTNWGDNGY-------GYFAANIDLMMIEEYPYV 219
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 22/236 (9%)
Query: 123 VPSSMDSRENGA---VTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMS--LSEQELVD 177
+P+S D R V+PV++Q C C++F+S+ +E +I T + LS QE+V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 178 CDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKD---ENDAAAAT 234
C + +GC G + GL EA +P+ G D CK +D +
Sbjct: 267 CS--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTD-SPCKMKEDCFRYYSSEYHY 323
Query: 235 ISGFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDID------H 288
+ GF + N +++V P++V+ + F Y GI + H
Sbjct: 324 VGGF-YGGCNEALMKLELVHHGPMAVAFEVYD-DFLHYKKGIYHHTGLRDPFNPFELTNH 381
Query: 289 GVTAIGYGA-SSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
V +GYG S+ G YW+VKNSWGTGWGE GY RI+R G E A +A+ P
Sbjct: 382 AVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR--GTDECAIESIAVAATP 435
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 137/318 (43%), Gaps = 50/318 (15%)
Query: 46 QHGLVYA-DEAEKAETAYDFRRQYRGYKLAVNKFADLTNDEFRSMYAGYDWQNQNSPVIS 104
H V A + +K+ TA +RR KL++ DL RS ++G + + +P+
Sbjct: 147 HHNFVKAINSVQKSWTATTYRRYE---KLSIR---DLIR---RSGHSGRILRPKPAPITD 197
Query: 105 TSDPDASSPMDANSTVTDVPSSMDSRENGA---VTPVKDQGDCNCCWAFSSVAAVEGITK 161
+ + +P S D R V+PV++Q C C++F+S+ +E +
Sbjct: 198 ----------EIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIR 247
Query: 162 IETGKLMS--LSEQELVDCDTGSFDRGCTVGRMDTAFEFI-----KNNNGLTTEADYPFV 214
I T + LS QE+V C + +GC D F ++ + G+ E +P+
Sbjct: 248 ILTNNSQTPILSPQEVVSCS--PYAQGC-----DGGFPYLIAGKYAQDFGVVEENCFPYT 300
Query: 215 GNDYGACKTTKDENDAAAATISGFKFVPANNEQALM--QVVADQPVSVSIDSSGYMFQFY 272
D CK ++ ++ +ALM ++V P++V+ + F Y
Sbjct: 301 ATD-APCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHD-DFLHY 358
Query: 273 SSGIIKSEECGTDID------HGVTAIGYGASS-DGTKYWLVKNSWGTGWGEGGYVRIQR 325
SGI + H V +GYG G YW+VKNSWG+ WGE GY RI+R
Sbjct: 359 HSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRR 418
Query: 326 EVGAQEGACGIAMMASYP 343
G E A MA+ P
Sbjct: 419 --GTDECAIESIAMAAIP 434
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 46/251 (18%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIETGKLMSL--SEQELV 176
+P+S D+RE P ++DQG C CWAF +V A+ I T +S+ S ++L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY-------PF--------VGNDYGAC 221
C GC G A+ F GL + Y P+ V C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 222 KTTKDENDAAAATISGFK-------------FVPANNEQALM-QVVADQPV--SVSIDSS 265
D + G+ + +N+E+ +M ++ + PV + S+ S
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 243 ---FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILR 298
Query: 326 EVGAQEGACGI 336
+ CGI
Sbjct: 299 ----GQDHCGI 305
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIETGKLMSL--SEQELV 176
+P+S D+RE P ++DQG C CWAF +V A+ I T +S+ S ++L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY-------PF--------VGNDYGAC 221
C GC G A+ F GL + Y P+ V C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 222 KTTKDENDAAAATISGFK-------------FVPANNEQALM-QVVADQPV--SVSIDSS 265
D + G+ + +N+E+ +M ++ + PV + S+ S
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 182 ---FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILR 237
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIETGKLMSL--SEQELV 176
+P+S D+RE P ++DQG C CWAF +V A+ I T +S+ S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY-------PF--------VGNDYGAC 221
C GC G A+ F GL + Y P+ V C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 222 KTTKDENDAAAATISGFK-------------FVPANNEQALM-QVVADQPV--SVSIDSS 265
D + G+ + +N+E+ +M ++ + PV + S+ S
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 181 ---FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILR 236
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIETGKLMSL--SEQELV 176
+P+S D+RE P ++DQG C CWAF +V A+ I T +S+ S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY-------PF--------VGNDYGAC 221
C GC G A+ F GL + Y P+ V C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 222 KTTKDENDAAAATISGFK-------------FVPANNEQALM-QVVADQPV--SVSIDSS 265
D + G+ + +N+E+ +M ++ + PV + S+ S
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 180 ---FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 36/239 (15%)
Query: 121 TDVPSSMDSREN----GAVTPVKDQGDCNCCWAFSSVAAVEGITKIETG--KLMSLSEQE 174
++PSS DSR+ ++ ++DQ C CWAF +V A+ + I++G + + LS +
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 175 LVDCDTGSFDRGCTVGRMDTAFEF-----------IKNNNGLT----------TEADYPF 213
L+ C S GC G + A+++ +N+ G T+ YP
Sbjct: 61 LLSC-CESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPP 119
Query: 214 VGNDY---GACKTTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSSGYM-- 268
G+ CK T + T + + N + + + + + +G+
Sbjct: 120 CGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 269 --FQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SGI K T H + IG+G + YWL+ NSW WGE GY RI R
Sbjct: 180 EDFLNYKSGIYKHITGETLGGHAIRIIGWGVENKAP-YWLIANSWNEDWGENGYFRIVR 237
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 23/220 (10%)
Query: 122 DVPSSMDSRENGAV---TPVKDQGD---CNCCWAFSSVAAVEGITKIE-TGKLMS--LSE 172
D+P S D R V + ++Q C CWA +S +A+ I+ G S LS
Sbjct: 35 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 94
Query: 173 QELVDC-DTGSFDRGCTVGRMDTAF------EFIKNNNGLTTEADYPFVGNDYGACKTTK 225
Q ++DC + GS + G + D A E N E D F N G C K
Sbjct: 95 QNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECD-KF--NQCGTCNEFK 151
Query: 226 DENDAAAATI--SGFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECG 283
+ + T+ G + E+ + ++ A+ P+S I ++ + Y+ GI +
Sbjct: 152 ECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLAN-YTGGIYAEYQDT 210
Query: 284 TDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRI 323
T I+H V+ G+G S DGT+YW+V+NSWG WGE G++RI
Sbjct: 211 TYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 144 CNCCWAFSSVAAVEGITKIE-TGKLMS--LSEQELVDC-DTGSFDRGCTVGRMDTAF--- 196
C CWA +S +A+ I+ G S LS Q ++DC + GS + G + D A
Sbjct: 28 CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHG 87
Query: 197 ---EFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATI--SGFKFVPANNEQALMQ 251
E N E D F N G C K+ + T+ G + E+ + +
Sbjct: 88 IPDETCNNYQAKDQECD-KF--NQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAE 144
Query: 252 VVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSW 311
+ A+ P+S I ++ + Y+ GI + T I+H V+ G+G S DGT+YW+V+NSW
Sbjct: 145 IYANGPISCGIMATERLAN-YTGGIYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSW 202
Query: 312 GTGWGEGGYVRI 323
G WGE G++RI
Sbjct: 203 GEPWGERGWLRI 214
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 100/240 (41%), Gaps = 42/240 (17%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIETGKLMSL--SEQELV 176
+P+S D+RE P ++DQG C WAF +V A+ I T +S+ S ++L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY------------PFVGNDYGACKTT 224
C GC G A+ F GL + Y P + GA
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 225 KDENDAAAAT-ISGFKFVP---------------ANNEQALM-QVVADQPV--SVSIDSS 265
E D + I + P +N+E+ +M ++ + PV + S+ S
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 185
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 186 ---FLLYKSGVYQHVTGEMMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILR 241
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 131 ENGAVT--PVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCT 188
EN ++ V+DQG+C+ W F+S +E I ++ + +S + +C G C
Sbjct: 16 ENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCD 75
Query: 189 VGRMDTAF-EFIKNNNGLTTEADYPF----VG-----------NDYGACKTTKDENDAAA 232
G F + I++ L E++YP+ VG N + K ++N+ +
Sbjct: 76 EGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNS 135
Query: 233 ATISGFKFVPA----NNEQALMQVVADQ-----PVSVSIDSSGYMFQFYSSGIIKSEECG 283
G+ + +N A ++++ + V I + M +S +K+ CG
Sbjct: 136 LDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNL-CG 194
Query: 284 TDI-DHGVTAIGYG--ASSDGTK--YWLVKNSWGTGWGEGGYVRI 323
D DH V +GYG +S+G K YW+V+NSWG WG+ GY ++
Sbjct: 195 DDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 108/252 (42%), Gaps = 46/252 (18%)
Query: 122 DVPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIET-GKL-MSLSEQEL 175
++P S D+RE + P ++DQG C CWAF +V A+ I T G++ + +S ++L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 176 VDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY------------PFVGNDYGACKT 223
+ C GC G A+ F GL + Y P + GA
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFW-TRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 224 TKDENDAA-------AATISGFK---------FVPANNEQALM-QVVADQPV--SVSIDS 264
E D A + +K + +++E+ +M ++ + PV + ++ S
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 184
Query: 265 SGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQ 324
F Y SG+ K E H + +G+G +G YWLV NSW WG+ G+ +I
Sbjct: 185 D---FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-NGVPYWLVANSWNADWGDNGFFKIL 240
Query: 325 REVGAQEGACGI 336
R E CGI
Sbjct: 241 R----GENHCGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 46/251 (18%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIET-GKL-MSLSEQELV 176
+P S D+RE + P ++DQG C CWAF +V A+ I T G++ + +S ++L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY------------PFVGNDYGACKTT 224
C GC G A+ F GL + Y P + GA
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFW-TRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 225 KDENDAA-------AATISGFK---------FVPANNEQALM-QVVADQPV--SVSIDSS 265
E D A + +K + +++E+ +M ++ + PV + ++ S
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD 179
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ K E H + +G+G +G YWLV NSW WG+ G+ +I R
Sbjct: 180 ---FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-NGVPYWLVANSWNADWGDNGFFKILR 235
Query: 326 EVGAQEGACGI 336
E CGI
Sbjct: 236 ----GENHCGI 242
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 35/226 (15%)
Query: 131 ENGAVT--PVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCT 188
EN ++ V+DQG+C+ W F+S +E I ++ + +S + +C G C
Sbjct: 15 ENNCISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCD 74
Query: 189 VGRMDTAF-EFIKNNNGLTTEADYPF----VG-----------NDYGACKTTKDENDAAA 232
G F + I++ L E++YP+ VG N + K ++N+ +
Sbjct: 75 EGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNS 134
Query: 233 ATISGFKFVPA----NNEQALMQVVADQ-----PVSVSIDSSGYM-FQFYSSGIIKSEEC 282
G+ + +N A ++++ + V I + M ++F SG C
Sbjct: 135 LDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEF--SGKKVQNLC 192
Query: 283 GTDI-DHGVTAIGYG--ASSDGTK--YWLVKNSWGTGWGEGGYVRI 323
G D DH V +GYG +S+G K YW+V+NSWG WG+ GY ++
Sbjct: 193 GDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 107/252 (42%), Gaps = 46/252 (18%)
Query: 122 DVPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIET-GKL-MSLSEQEL 175
++P S D+RE + P ++DQG C WAF +V A+ I T G++ + +S ++L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 176 VDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY------------PFVGNDYGACKT 223
+ C GC G A+ F GL + Y P + GA
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFW-TRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 224 TKDENDAA-------AATISGFK---------FVPANNEQALM-QVVADQPV--SVSIDS 264
E D A + +K + +++E+ +M ++ + PV + ++ S
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 240
Query: 265 SGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQ 324
F Y SG+ K E H + +G+G +G YWLV NSW WG+ G+ +I
Sbjct: 241 D---FLTYKSGVYKHEAGDVMGGHAIRILGWGIE-NGVPYWLVANSWNADWGDNGFFKIL 296
Query: 325 REVGAQEGACGI 336
R E CGI
Sbjct: 297 R----GENHCGI 304
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 42/240 (17%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIET-GKL-MSLSEQELV 176
+P S D+RE P ++DQG C CWAF +V A+ I + G++ + +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY-------PF--------VGNDYGAC 221
C G GC G A+ F GL + Y P+ V C
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFW-TKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 222 KTTKDENDAAAATISGFK-------------FVPANNEQALM-QVVADQPV--SVSIDSS 265
D + G+ + ANNE+ +M ++ + PV + S+ S
Sbjct: 120 TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 180 ---FLLYKSGVYQHVSGEIMGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILR 235
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 42/240 (17%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIET-GKL-MSLSEQELV 176
+P S D+RE P ++DQG C CWAF +V A+ I + G++ + +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 177 DCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY-------PF--------VGNDYGAC 221
C G GC G A+ F GL + Y P+ V C
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFW-TKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 222 KTTKDENDAAAATISGFK-------------FVPANNEQALM-QVVADQPV--SVSIDSS 265
D + G+ + ANNE+ +M ++ + PV + S+ S
Sbjct: 120 TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSD 179
Query: 266 GYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR 325
F Y SG+ + H + +G+G +GT YWLV NSW T WG+ G+ +I R
Sbjct: 180 ---FLLYKSGVYQHVSGEIMGGHAIRILGWGVE-NGTPYWLVGNSWNTDWGDNGFFKILR 235
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 34/246 (13%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAV-EGITKIETGKLMSLSEQELVD 177
+PSS DS E P + DQ C CWA ++ +A+ + + + + +S +L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 178 CDTGSFDRGCTVGRMDTAFEFIKNNNGLTTE--ADYPFV--------GNDYGACK----- 222
C + D GC G D A+ + ++ GL ++ YPF N Y C
Sbjct: 154 CCSDCGD-GCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 211
Query: 223 ------TTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGI 276
T D S + + + ++ P V+ D F Y+SG+
Sbjct: 212 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 270
Query: 277 IKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR---EVGAQE-G 332
H V +G+G +S+G YW + NSW T WG GY I+R E G ++ G
Sbjct: 271 YHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGG 329
Query: 333 ACGIAM 338
+ GI +
Sbjct: 330 SAGIPL 335
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 287 DHGVTAIGYGA-SSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343
+H V +GYG S+ G YW+VKNSWGTGWGE GY RI+R G E A +A+ P
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR--GTDECAIESIAVAATP 65
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 34/246 (13%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAV-EGITKIETGKLMSLSEQELVD 177
+PSS DS E P + DQ C CWA ++ +A+ + + + + +S +L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 178 CDTGSFDRGCTVGRMDTAFEFIKNNNGLTTE--ADYPFV--------GNDYGACK----- 222
C + D GC G D A+ + ++ GL ++ YPF N Y C
Sbjct: 131 CCSDCGD-GCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 188
Query: 223 ------TTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGI 276
T D S + + + ++ P V+ D F Y+SG+
Sbjct: 189 TPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 247
Query: 277 IKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR---EVGAQE-G 332
H V +G+G +S+G YW + NSW T WG GY I+R E G ++ G
Sbjct: 248 YHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGG 306
Query: 333 ACGIAM 338
+ GI +
Sbjct: 307 SAGIPL 312
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 34/246 (13%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAV-EGITKIETGKLMSLSEQELVD 177
+PSS DS E P + DQ C CWA ++ +A+ + + + + +S +L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 178 CDTGSFDRGCTVGRMDTAFEFIKNNNGLTTE--ADYPFV--------GNDYGACK----- 222
C + D GC G D A+ + ++ GL ++ YPF N Y C
Sbjct: 132 CCSDCGD-GCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFD 189
Query: 223 ------TTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGI 276
T D S + + + ++ P V+ D F Y+SG+
Sbjct: 190 TPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 248
Query: 277 IKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQR---EVGAQE-G 332
H V +G+G +S+G YW + NSW T WG GY I+R E G ++ G
Sbjct: 249 YHHVSGQYLGGHAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGG 307
Query: 333 ACGIAM 338
+ GI +
Sbjct: 308 SAGIPL 313
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 302 TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPTV 345
KYWLVKNSWG WG GGYV++ ++ + CGIA ASYPTV
Sbjct: 2 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPTV 42
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 243 ANNEQALM-QVVADQPV--SVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASS 299
ANNE+ +M ++ + PV + S+ S F Y SG+ + H + +G+G
Sbjct: 106 ANNEKEIMAEIYKNGPVEGAFSVYSD---FLLYKSGVYQHVSGEIMGGHAIRILGWGVE- 161
Query: 300 DGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGI 336
+GT YWLV NSW T WG+ G+ +I R + CGI
Sbjct: 162 NGTPYWLVGNSWNTDWGDNGFFKILR----GQDHCGI 194
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 123 VPSSMDSRENGA---VTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMS--LSEQELVD 177
+P+S D R V+PV++Q C C++F+S+ +E +I T + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 178 CDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKD---ENDAAAAT 234
C + +GC G + GL EA +P+ G D CK +D +
Sbjct: 61 CS--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTD-SPCKMKEDCFRYYSSEYHY 117
Query: 235 ISGFKFVPANNEQALMQVVADQPVSVSID 263
+ GF + N +++V P++V+ +
Sbjct: 118 VGGF-YGGCNEALMKLELVHHGPMAVAFE 145
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 243 ANNEQALM-QVVADQPV--SVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASS 299
+N+E+ +M ++ + PV + S+ S F Y SG+ + H + +G+G
Sbjct: 105 SNSEKDIMAEIYKNGPVEGAFSVYSD---FLLYKSGVYQHVTGEMMGGHAIRILGWGVE- 160
Query: 300 DGTKYWLVKNSWGTGWGEGGYVRIQR 325
+GT YWLV NSW T WG+ G+ +I R
Sbjct: 161 NGTPYWLVANSWNTDWGDNGFFKILR 186
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAVEGITKIET 164
+P+S D+RE P ++DQG C CWAF +V A+ I T
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHT 46
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 123 VPSSMDSRENGAVTP----VKDQGDCNCCWAFSSVAAV 156
+P S D+RE P ++DQG C CWAF +V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 43 WMAQHGLVYADEAEKAETAYDFR----------RQYRGYKLAVNKFADLTNDEFRSMYAG 92
+ A + YA E EK F+ +Q Y L +N F DL+ DEFR Y G
Sbjct: 28 FQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLG 87
Query: 93 Y 93
+
Sbjct: 88 F 88
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 287 DHGVTAIGYGASSDGTKYWLVKNSWGT 313
DHG G +G +Y+ VKNSWGT
Sbjct: 317 DHGXQIYGIAKDQEGNEYYXVKNSWGT 343
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 288 HGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGY 320
H V +GY D +++ ++NSWG GE GY
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGY 266
>pdb|3S6X|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6Y|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Z|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
Length = 325
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 286 IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGA---QEGACGIAMMASY 342
+ +G + G SS GT ++ KN W W + G +R++ E G + AM SY
Sbjct: 262 VTYGAQTVAIGLSSGGTPQYMSKNLWVEQW-QDGVLRLRVEGGGSITHSNSKWPAMTVSY 320
Query: 343 P 343
P
Sbjct: 321 P 321
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 MLKMHEQWMAQHGLVYADEAEKAETAYDFRRQYRGYKL 73
+L ++W+A GL++ D A TA + RQY+ YK+
Sbjct: 146 VLHARDKWLAPDGLIFPDRATLYVTAIE-DRQYKDYKI 182
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 MLKMHEQWMAQHGLVYADEAEKAETAYDFRRQYRGYKL 73
+L ++W+A GL++ D A TA + RQY+ YK+
Sbjct: 159 VLHARDKWLAPDGLIFPDRATLYVTAIE-DRQYKDYKI 195
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 MLKMHEQWMAQHGLVYADEAEKAETAYDFRRQYRGYKL 73
+L ++W+A GL++ D A TA + RQY+ YK+
Sbjct: 149 VLHARDKWLAPDGLIFPDRATLYVTAIE-DRQYKDYKI 185
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 198 FIKNNNGLTTEADYPFVGNDYGA---CKTTKDENDAAAATISGFKFV----PANNEQALM 250
FIKN N TTE V + GA C +K +N A GF FV P ++AL
Sbjct: 9 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 68
Query: 251 QV 252
Q+
Sbjct: 69 QL 70
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 MLKMHEQWMAQHGLVYADEAEKAETAYDFRRQYRGYKL 73
+L ++W+A GL++ D A TA + RQY+ YK+
Sbjct: 155 VLHARDKWLAPDGLIFPDRATLYVTAIE-DRQYKDYKI 191
>pdb|2OJ5|A Chain A, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|B Chain B, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|C Chain C, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|D Chain D, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|E Chain E, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|2OJ5|F Chain F, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain Wild-Type At 1.75 A Resolution
pdb|3EOY|A Chain A, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|B Chain B, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|C Chain C, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|D Chain D, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|E Chain E, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|F Chain F, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 165
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 286 IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGA---QEGACGIAMMASY 342
+ +G + G SS GT ++ KN W W + G +R++ E G + AM SY
Sbjct: 102 VTYGAQTVAIGLSSGGTPQYMSKNLWVEQW-QDGVLRLRVEGGGSITHSNSKWPAMTVSY 160
Query: 343 P 343
P
Sbjct: 161 P 161
>pdb|2OJ6|A Chain A, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|B Chain B, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|C Chain C, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|D Chain D, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|E Chain E, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
pdb|2OJ6|F Chain F, Crystal Structure Of Reovirus T3d Attachment Protein
Sigma1 Head Domain D345n Mutant
Length = 165
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 286 IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGA---QEGACGIAMMASY 342
+ +G + G SS GT ++ KN W W + G +R++ E G + AM SY
Sbjct: 102 VTYGAQTVAIGLSSGGTPQYMSKNLWVEQW-QDGVLRLRVEGGGSITHSNSKWPAMTVSY 160
Query: 343 P 343
P
Sbjct: 161 P 161
>pdb|1KKE|A Chain A, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
pdb|1KKE|B Chain B, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
pdb|1KKE|C Chain C, Crystal Structure Of Reovirus Attachment Protein Sigma1
Trimer
Length = 210
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 286 IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGA---QEGACGIAMMASY 342
+ +G + G SS G ++ KN W W + G +R++ E G + AM SY
Sbjct: 147 VTYGAQTVAIGLSSGGAPQYMSKNLWVEQW-QDGVLRLRVEGGGSITHSNSKWPAMTVSY 205
Query: 343 P 343
P
Sbjct: 206 P 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,713,009
Number of Sequences: 62578
Number of extensions: 457590
Number of successful extensions: 1481
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 138
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)