Query 048276
Match_columns 345
No_of_seqs 286 out of 1825
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 5.6E-81 1.2E-85 562.9 25.4 291 34-344 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.1E-77 6.6E-82 563.2 34.0 314 9-343 7-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 7.6E-75 1.6E-79 562.0 31.3 301 34-345 163-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 1.2E-73 2.5E-78 552.2 31.7 296 34-345 120-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 6E-68 1.3E-72 496.7 29.3 277 44-344 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 6.1E-58 1.3E-62 415.9 22.3 210 123-343 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 9.7E-58 2.1E-62 413.2 22.7 214 123-344 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 2.5E-57 5.4E-62 403.1 23.0 208 124-343 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 2.4E-56 5.2E-61 403.4 21.2 207 124-341 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 1.3E-55 2.8E-60 393.7 17.0 215 123-344 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 6.9E-54 1.5E-58 424.2 23.9 216 120-344 378-675 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 2.2E-53 4.7E-58 416.8 22.5 208 121-341 203-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 3.5E-50 7.6E-55 346.7 17.9 169 123-340 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 4.8E-47 1E-51 339.1 21.0 199 126-328 1-214 (223)
15 PTZ00462 Serine-repeat antigen 100.0 2.2E-45 4.8E-50 373.2 21.9 204 135-344 544-780 (1004)
16 KOG1544 Predicted cysteine pro 100.0 7.6E-40 1.6E-44 292.3 5.9 259 68-341 160-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 5.3E-32 1.1E-36 247.9 8.3 199 122-329 98-316 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 6.1E-24 1.3E-28 204.9 13.8 185 136-326 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.7 7.9E-17 1.7E-21 155.8 14.0 185 136-326 56-400 (438)
20 PF08246 Inhibitor_I29: Cathep 99.4 1.6E-13 3.4E-18 96.3 5.6 47 40-86 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.2 1.7E-11 3.8E-16 85.5 3.5 46 40-85 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.8 1.5E-08 3.2E-13 92.6 9.1 77 246-324 297-400 (444)
23 PF05543 Peptidase_C47: Stapho 96.8 0.016 3.5E-07 49.0 10.2 119 140-312 18-145 (175)
24 PF13529 Peptidase_C39_2: Pept 96.0 0.074 1.6E-06 43.0 9.7 57 244-311 87-144 (144)
25 KOG4128 Bleomycin hydrolases a 93.5 0.049 1.1E-06 50.5 2.4 78 135-213 62-168 (457)
26 PF14399 Transpep_BrtH: NlpC/p 88.9 1.1 2.4E-05 41.9 6.5 54 246-308 78-132 (317)
27 PF09778 Guanylate_cyc_2: Guan 85.0 3.4 7.4E-05 36.5 6.8 60 245-309 112-180 (212)
28 COG4990 Uncharacterized protei 76.4 6.9 0.00015 33.5 5.5 52 239-312 116-168 (195)
29 KOG4128 Bleomycin hydrolases a 75.5 0.37 8.1E-06 44.9 -2.4 78 245-324 305-412 (457)
30 PF08127 Propeptide_C1: Peptid 73.5 2.9 6.2E-05 26.7 2.0 25 68-94 13-37 (41)
31 cd00044 CysPc Calpains, domain 72.4 12 0.00026 35.2 6.8 27 286-313 235-263 (315)
32 PF07172 GRP: Glycine rich pro 70.2 2.6 5.6E-05 32.3 1.4 13 17-29 15-27 (95)
33 PF10731 Anophelin: Thrombin i 57.9 13 0.00028 25.7 2.8 17 9-25 4-20 (65)
34 cd02549 Peptidase_C39A A sub-f 55.5 39 0.00085 26.9 6.1 44 249-311 70-114 (141)
35 PF12385 Peptidase_C70: Papain 52.1 35 0.00075 28.7 5.0 38 245-298 97-135 (166)
36 smart00230 CysPc Calpain-like 43.6 31 0.00067 32.5 4.1 26 286-312 227-254 (318)
37 KOG4404 Tandem pore domain K+ 38.7 1.1E+02 0.0024 28.9 6.6 22 132-154 97-118 (350)
38 PF04202 Mfp-3: Foot protein 3 36.7 22 0.00047 25.1 1.3 24 5-28 2-25 (71)
39 PF01640 Peptidase_C10: Peptid 36.3 1.6E+02 0.0034 25.4 7.1 49 247-322 141-192 (192)
40 PF07438 DUF1514: Protein of u 30.9 1.5E+02 0.0032 20.9 4.7 10 39-48 37-46 (66)
41 PF05984 Cytomega_UL20A: Cytom 30.5 42 0.00091 24.9 2.0 20 1-21 1-20 (100)
42 PF13677 MotB_plug: Membrane M 30.0 1.6E+02 0.0035 20.1 4.9 14 34-47 44-57 (58)
43 TIGR01710 typeII_sec_gspG gene 29.1 1.7E+02 0.0037 23.6 5.8 21 3-23 3-23 (134)
44 PF10717 ODV-E18: Occlusion-de 28.8 46 0.001 24.7 2.0 17 5-21 29-45 (85)
45 PRK14762 membrane protein; Pro 26.2 1E+02 0.0023 17.3 2.6 14 4-17 1-14 (27)
46 PF15588 Imm7: Immunity protei 24.6 2.4E+02 0.0052 22.2 5.7 36 289-325 17-58 (115)
47 PF05391 Lsm_interact: Lsm int 20.4 78 0.0017 17.1 1.4 12 80-91 9-20 (21)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-81 Score=562.93 Aligned_cols=291 Identities=40% Similarity=0.709 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHhhc-----------CCceeeecccCCCCCHHHHHhHhcccccCCCCCCC
Q 048276 34 LIMLKMHEQWMAQHGLVYADEAEKAETAYDFRRQ-----------YRGYKLAVNKFADLTNDEFRSMYAGYDWQNQNSPV 102 (345)
Q Consensus 34 ~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~n-----------~~~~~~g~N~fsDlt~eE~~~~~~~~~~~~~~~~~ 102 (345)
...++.|..|+.+|+|+|.+.+|...|+.||++| ..|.+.|+|+|||||+|||++++++.+ .. ..
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~---~~-~~ 140 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVK---RR-GS 140 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccc---cc-cc
Confidence 3457889999999999999999999999999998 358999999999999999999998766 32 11
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCceecccCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCCcCChhHhhhcCCCC
Q 048276 103 ISTSDPDASSPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGS 182 (345)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~ 182 (345)
..+. ...... ......||++||||++|.||||||||+||||||||+++++|+++.|+++++++||||+|+||+..
T Consensus 141 ~~~~---~~~~~~-~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~- 215 (372)
T KOG1542|consen 141 KLPG---DAAEAP-IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC- 215 (372)
T ss_pred cCcc---ccccCc-CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc-
Confidence 1001 011111 13345899999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCChHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEE
Q 048276 183 FDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVS 261 (345)
Q Consensus 183 ~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~ 261 (345)
+.||+||.+..|++|+++.+|+..|.+|||++..-..|... .....+.|++|..++ .|+++|.+.|. +|||+|+
T Consensus 216 -d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~---~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vg 290 (372)
T KOG1542|consen 216 -DNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD---KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVG 290 (372)
T ss_pred -CCcCCCCChhHHHHHHHHhCCccccccCCccccCCCccccc---hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEE
Confidence 89999999999999988888999999999999983399988 467789999999998 58999988887 9999999
Q ss_pred EecCCccccccccCeecC--CCCCCC-CCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccc
Q 048276 262 IDSSGYMFQFYSSGIIKS--EECGTD-IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAM 338 (345)
Q Consensus 262 ~~~~~~~f~~y~~Gi~~~--~~~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~ 338 (345)
|++. .+|.|.+||..+ ..|+.. ++|+|+|||||.+...++|||||||||++|||+||+||.||.| .|||++
T Consensus 291 iNa~--~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N----~CGi~~ 364 (372)
T KOG1542|consen 291 INAK--PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSN----ACGIAD 364 (372)
T ss_pred EchH--HHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecccc----cccccc
Confidence 9975 899999999988 568855 8999999999998438999999999999999999999999974 599999
Q ss_pred ccceec
Q 048276 339 MASYPT 344 (345)
Q Consensus 339 ~~~yp~ 344 (345)
+++-+.
T Consensus 365 mvss~~ 370 (372)
T KOG1542|consen 365 MVSSAA 370 (372)
T ss_pred chhhhh
Confidence 987664
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.1e-77 Score=563.19 Aligned_cols=314 Identities=33% Similarity=0.607 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHhhc----------CCceeeecccC
Q 048276 9 YFCLVSLLVMYFWAIHALCRPIGEKLIMLKMHEQWMAQHGLVYADEAEKAETAYDFRRQ----------YRGYKLAVNKF 78 (345)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~n----------~~~~~~g~N~f 78 (345)
.++.++++|+.|.+.++..+-+..+.+++.+|++||++|+|+|.+.+|+.+|++||++| +.+|++|+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~F 86 (348)
T PTZ00203 7 ALCAVAVVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKF 86 (348)
T ss_pred HHHHHHHHHHHHHHhhccchhcccccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEecccc
Confidence 56777777888877776666555456788899999999999999888999999999998 35899999999
Q ss_pred CCCCHHHHHhHhcccccCCCCCCCccCCCCCCCCCCCC-CCCCCCCCCceecccCCCCCccccCCCCcchHHHHHHHHHH
Q 048276 79 ADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASSPMDA-NSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVE 157 (345)
Q Consensus 79 sDlt~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lP~~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le 157 (345)
+|||+|||.+++++... ...... .. ....... ...+.+||++||||++|.|+||||||.||||||||+++++|
T Consensus 87 aDlT~eEf~~~~l~~~~--~~~~~~--~~--~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiE 160 (348)
T PTZ00203 87 FDLSEAEFAARYLNGAA--YFAAAK--QH--AGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIE 160 (348)
T ss_pred ccCCHHHHHHHhcCCCc--cccccc--cc--ccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHH
Confidence 99999999987764220 110000 00 0011110 11234799999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHHHc--CCCCCCCcccccCCCCC---CCCCCcccCCCcc
Q 048276 158 GITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNN--NGLTTEADYPFVGNDYG---ACKTTKDENDAAA 232 (345)
Q Consensus 158 ~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~~---~c~~~~~~~~~~~ 232 (345)
+++++++++.+.||+|+|+||+.. +.||+||++..|++|+.++ +|+++|++|||.+.+ + .|.... .....
T Consensus 161 s~~~i~~~~~~~LSeQqLvdC~~~--~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~-~~~~~C~~~~--~~~~~ 235 (348)
T PTZ00203 161 SQWAVAGHKLVRLSEQQLVSCDHV--DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGN-GDVPECSNSS--ELAPG 235 (348)
T ss_pred HHHHHhcCCCccCCHHHHHhccCC--CCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCC-CCCCcCCCCc--ccccc
Confidence 999999999999999999999874 7899999999999999864 568999999999876 4 576431 11234
Q ss_pred eEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCeecCCCCC-CCCCeEEEEEEecccCCCccEEEEEcC
Q 048276 233 ATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECG-TDIDHGVTAIGYGASSDGTKYWLVKNS 310 (345)
Q Consensus 233 ~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNS 310 (345)
.++.+|..++. ++++|+.+|+ +|||+++|++. +|++|++|||.. |. ..++|||+|||||.+ +|++|||||||
T Consensus 236 ~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~--~f~~Y~~GIy~~--c~~~~~nHaVliVGYG~~-~g~~YWiikNS 309 (348)
T PTZ00203 236 ARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS--SFMSYHSGVLTS--CIGEQLNHGVLLVGYNMT-GEVPYWVIKNS 309 (348)
T ss_pred eEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh--hhcCccCceeec--cCCCCCCeEEEEEEEecC-CCceEEEEEcC
Confidence 67888888864 7788999998 79999999985 799999999974 75 457999999999987 78899999999
Q ss_pred CCCCCCCCceEEEEecCCCCCCCccccccccee
Q 048276 311 WGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343 (345)
Q Consensus 311 WG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~yp 343 (345)
||++|||+|||||+|+.| .|||++.+...
T Consensus 310 WG~~WGe~GY~ri~rg~n----~Cgi~~~~~~~ 338 (348)
T PTZ00203 310 WGEDWGEKGYVRVTMGVN----ACLLTGYPVSV 338 (348)
T ss_pred CCCCcCcCceEEEEcCCC----cccccceEEEE
Confidence 999999999999999863 49999877654
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=7.6e-75 Score=562.04 Aligned_cols=301 Identities=33% Similarity=0.573 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHhhc-----------CCceeeecccCCCCCHHHHHhHhcccccCCCCCCC
Q 048276 34 LIMLKMHEQWMAQHGLVYADEAEKAETAYDFRRQ-----------YRGYKLAVNKFADLTNDEFRSMYAGYDWQNQNSPV 102 (345)
Q Consensus 34 ~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~n-----------~~~~~~g~N~fsDlt~eE~~~~~~~~~~~~~~~~~ 102 (345)
.+....|++|+++|+|+|.+.+|+.+|++||++| +.+|++|+|+|+|||.|||++++++......+...
T Consensus 163 ~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~ 242 (489)
T PTZ00021 163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNG 242 (489)
T ss_pred hHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccccccc
Confidence 3445779999999999999988999999999998 35899999999999999999887764410000000
Q ss_pred c-cCCCCCCC---CCCCCCCCCCCCCCceecccCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCCcCChhHhhhc
Q 048276 103 I-STSDPDAS---SPMDANSTVTDVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDC 178 (345)
Q Consensus 103 ~-~~~~~~~~---~~~~~~~~~~~lP~~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc 178 (345)
. ........ ..+. ......+|+++|||+.|.||||||||.||||||||+++++|++++|+++..+.||+|+|+||
T Consensus 243 ~~~~~~~~~~~~~~~~~-~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDC 321 (489)
T PTZ00021 243 KKSPRVINYDDVIKKYK-PKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDC 321 (489)
T ss_pred ccccccccccccccccc-cccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhh
Confidence 0 00000000 0011 01111249999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHh-CCC
Q 048276 179 DTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVA-DQP 257 (345)
Q Consensus 179 ~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gP 257 (345)
+.. +.||+||++..|+.|+.+++|+++|++|||.+...+.|.... ....++|.+|..++ +++|+++|+ .||
T Consensus 322 s~~--n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~---~~~~~~i~~y~~i~---~~~lk~al~~~GP 393 (489)
T PTZ00021 322 SFK--NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR---CKEKYKIKSYVSIP---EDKFKEAIRFLGP 393 (489)
T ss_pred ccC--CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc---ccccceeeeEEEec---HHHHHHHHHhcCC
Confidence 864 789999999999999988779999999999987437897542 33457889998886 467999998 799
Q ss_pred eEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEecccC---------CCccEEEEEcCCCCCCCCCceEEEEecCC
Q 048276 258 VSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASS---------DGTKYWLVKNSWGTGWGEGGYVRIQREVG 328 (345)
Q Consensus 258 V~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~GY~~i~~~~~ 328 (345)
|+|++++. .+|++|++|||+.+ |+..++|||+|||||+++ .+.+|||||||||++|||+|||||+|+.+
T Consensus 394 Vsv~i~a~-~~f~~YkgGIy~~~-C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~ 471 (489)
T PTZ00021 394 ISVSIAVS-DDFAFYKGGIFDGE-CGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDEN 471 (489)
T ss_pred eEEEEEee-cccccCCCCcCCCC-CCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCC
Confidence 99999998 68999999999875 987789999999999752 13579999999999999999999999975
Q ss_pred CCCCCcccccccceecC
Q 048276 329 AQEGACGIAMMASYPTV 345 (345)
Q Consensus 329 ~~~~~Cgi~~~~~yp~~ 345 (345)
...++|||++.++||++
T Consensus 472 g~~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 472 GLMKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCCCCcccceeEec
Confidence 44467999999999975
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.2e-73 Score=552.19 Aligned_cols=296 Identities=34% Similarity=0.616 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHhhc---------CCceeeecccCCCCCHHHHHhHhcccccCCCCCCC--
Q 048276 34 LIMLKMHEQWMAQHGLVYADEAEKAETAYDFRRQ---------YRGYKLAVNKFADLTNDEFRSMYAGYDWQNQNSPV-- 102 (345)
Q Consensus 34 ~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~n---------~~~~~~g~N~fsDlt~eE~~~~~~~~~~~~~~~~~-- 102 (345)
.++...|++|+++|+|+|.+.+|+.+|+.||++| +.+|++|+|+|||||+|||.+++++.. .+...
T Consensus 120 ~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~lgiN~FsDlT~eEF~~~~~~~~---~~~~~~~ 196 (448)
T PTZ00200 120 FEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPVIK---VPPKSNS 196 (448)
T ss_pred HHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeEEeccccccCCHHHHHHHhccCC---Ccccccc
Confidence 4566789999999999999888999999999999 358999999999999999998876544 21100
Q ss_pred --cc---CCCCCCCCCCCC---C-----CCC----CCCCCceecccCCCCCccccCC-CCcchHHHHHHHHHHHHHHHhc
Q 048276 103 --IS---TSDPDASSPMDA---N-----STV----TDVPSSMDSRENGAVTPVKDQG-DCNCCWAFSSVAAVEGITKIET 164 (345)
Q Consensus 103 --~~---~~~~~~~~~~~~---~-----~~~----~~lP~~~Dwr~~g~vtpV~dQg-~cgsCwAfA~~~~le~~~~~~~ 164 (345)
.. .........+.. . .++ ..+|+++|||+.|.|+|||||| .||||||||+++++|+++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 197 TSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 00 000000000000 0 011 2369999999999999999999 9999999999999999999999
Q ss_pred CCCCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCC
Q 048276 165 GKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPAN 244 (345)
Q Consensus 165 ~~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~ 244 (345)
+..+.||+|+|+||+.. +.||+||++..|++|++++ |+++|++|||.+.. +.|.... .....|.+|..++
T Consensus 277 ~~~~~LSeQqLvDC~~~--~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~-~~C~~~~----~~~~~i~~y~~~~-- 346 (448)
T PTZ00200 277 DKSVDLSEQELVNCDTK--SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKD-GKCVVSS----TKKVYIDSYLVAK-- 346 (448)
T ss_pred CCCeecCHHHHhhccCc--cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCC-CCCcCCC----CCeeEecceEecC--
Confidence 99999999999999874 7899999999999999876 99999999999988 8997652 2345688887664
Q ss_pred hHHHHHHHHhCCCeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEeccc-CCCccEEEEEcCCCCCCCCCceEEE
Q 048276 245 NEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGAS-SDGTKYWLVKNSWGTGWGEGGYVRI 323 (345)
Q Consensus 245 ~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~GY~~i 323 (345)
..+.+++++..|||+|+|++. .+|+.|++|||+++ |+..++|||+|||||.+ ++|.+|||||||||++|||+|||||
T Consensus 347 ~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~-C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri 424 (448)
T PTZ00200 347 GKDVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGE-CGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRL 424 (448)
T ss_pred HHHHHHHHHhcCCEEEEeecc-cccccCCCCccccc-cCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEE
Confidence 456677777799999999998 69999999999875 98779999999999964 3688999999999999999999999
Q ss_pred EecCCCCCCCcccccccceecC
Q 048276 324 QREVGAQEGACGIAMMASYPTV 345 (345)
Q Consensus 324 ~~~~~~~~~~Cgi~~~~~yp~~ 345 (345)
+|+.. ..|.|||++.+.||++
T Consensus 425 ~r~~~-g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 425 ERTNE-GTDKCGILTVGLTPVF 445 (448)
T ss_pred EeCCC-CCCcCCccccceeeEE
Confidence 99752 2357999999999974
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-68 Score=496.67 Aligned_cols=277 Identities=44% Similarity=0.792 Sum_probs=240.8
Q ss_pred HHHhCCccCCHHHHHHHHHHHhhc-----------CCceeeecccCCCCCHHHHHhHhcccccCCCCCCCccCCCCCCCC
Q 048276 44 MAQHGLVYADEAEKAETAYDFRRQ-----------YRGYKLAVNKFADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASS 112 (345)
Q Consensus 44 ~~~~~k~Y~~~~e~~~R~~iF~~n-----------~~~~~~g~N~fsDlt~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (345)
+.+|.+.|.+..|+..|+.+|.+| +.+|++|+|+|+|++.+|+++.+.+.+ .+... ..
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~---~~~~~--------~~ 98 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKK---PPEIK--------RD 98 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhcccc---Ccccc--------cc
Confidence 777788887677889999999998 478999999999999999999877665 33221 11
Q ss_pred CCCCCCCCCCCCCceecccCC-CCCccccCCCCcchHHHHHHHHHHHHHHHhcC-CCCcCChhHhhhcCCCCCCCCCCCC
Q 048276 113 PMDANSTVTDVPSSMDSRENG-AVTPVKDQGDCNCCWAFSSVAAVEGITKIETG-KLMSLSEQELVDCDTGSFDRGCTVG 190 (345)
Q Consensus 113 ~~~~~~~~~~lP~~~Dwr~~g-~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~dc~~~~~~~gc~gG 190 (345)
.+.......+||++||||+++ .++||||||.||||||||++++||++++|+++ ..+.||+|+|+||+.. .+.||+||
T Consensus 99 ~~~~~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG 177 (325)
T KOG1543|consen 99 KFTEKLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGG 177 (325)
T ss_pred ccccccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCC
Confidence 111023345899999999996 55569999999999999999999999999999 8999999999999987 68899999
Q ss_pred ChHHHHHHHHHcCCCCC-CCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCcc
Q 048276 191 RMDTAFEFIKNNNGLTT-EADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYM 268 (345)
Q Consensus 191 ~~~~a~~~~~~~~Gi~~-e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~ 268 (345)
.+..|++|+.++ |+++ +++|||.+.. +.|.... ......+.++..++.+ +++|+++|+ +|||+|+|++.. +
T Consensus 178 ~~~~A~~yi~~~-G~~t~~~~Ypy~~~~-~~C~~~~---~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~ 250 (325)
T KOG1543|consen 178 EPKNAFKYIKKN-GGVTECENYPYIGKD-GTCKSNK---KDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-D 250 (325)
T ss_pred CHHHHHHHHHHh-CCCCCCcCCCCcCCC-CCccCCC---ccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-h
Confidence 999999999998 6666 9999999998 8999884 3567778888888754 999999998 799999999994 9
Q ss_pred ccccccCeecCCCCCC-CCCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccce-ec
Q 048276 269 FQFYSSGIIKSEECGT-DIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASY-PT 344 (345)
Q Consensus 269 f~~y~~Gi~~~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~y-p~ 344 (345)
|+.|++|||.++.|.. .++|||+|||||. .++.+|||||||||+.|||+|||||.|+.++ |+|++.+.| |.
T Consensus 251 F~~Y~~GVy~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~----~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 251 FSLYKGGVYAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNK----CGIASEASYGPI 323 (325)
T ss_pred hhhccCceEeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCc----hhhhcccccCCC
Confidence 9999999999997776 5999999999999 6889999999999999999999999999865 999999999 65
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=6.1e-58 Score=415.94 Aligned_cols=210 Identities=32% Similarity=0.668 Sum_probs=179.5
Q ss_pred CCCceecccCC----CCCccccCCCCcchHHHHHHHHHHHHHHHhcCC------CCcCChhHhhhcCCCCCCCCCCCCCh
Q 048276 123 VPSSMDSRENG----AVTPVKDQGDCNCCWAFSSVAAVEGITKIETGK------LMSLSEQELVDCDTGSFDRGCTVGRM 192 (345)
Q Consensus 123 lP~~~Dwr~~g----~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~------~~~lS~q~l~dc~~~~~~~gc~gG~~ 192 (345)
||++||||+.+ +|+||+|||.||+|||||++++||+++++++++ .+.||+|+|++|+.. +.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~--~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY--SQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC--CCCCCCCCH
Confidence 79999999998 999999999999999999999999999998776 689999999999864 689999999
Q ss_pred HHHHHHHHHcCCCCCCCcccccC-CCCCCCCCCcccCCCcceEeeeeEEcc----CChHHHHHHHHh-CCCeEEEEecCC
Q 048276 193 DTAFEFIKNNNGLTTEADYPFVG-NDYGACKTTKDENDAAAATISGFKFVP----ANNEQALMQVVA-DQPVSVSIDSSG 266 (345)
Q Consensus 193 ~~a~~~~~~~~Gi~~e~~yPY~~-~~~~~c~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~l~-~gPV~v~~~~~~ 266 (345)
..+++|+.++ |+++|++|||.. .. +.|.... ......++..|..+. ..++++||++|. +|||++++++.
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~~-~~C~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~- 153 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADDD-RPCKASP--SECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY- 153 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCCC-CCCCCCc--cccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-
Confidence 9999999886 999999999998 55 7887652 122233444444331 247889999998 89999999998
Q ss_pred ccccccccCeecCCC----CCC---------CCCeEEEEEEecccC-CCccEEEEEcCCCCCCCCCceEEEEecCCCCCC
Q 048276 267 YMFQFYSSGIIKSEE----CGT---------DIDHGVTAIGYGASS-DGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEG 332 (345)
Q Consensus 267 ~~f~~y~~Gi~~~~~----~~~---------~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~ 332 (345)
++|+.|++|||+.+. |.. .++|||+|||||++. +|.+|||||||||++|||+|||||+|+.+
T Consensus 154 ~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~---- 229 (243)
T cd02621 154 SDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTN---- 229 (243)
T ss_pred ccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCc----
Confidence 699999999998864 642 479999999999974 48899999999999999999999999864
Q ss_pred Cccccccccee
Q 048276 333 ACGIAMMASYP 343 (345)
Q Consensus 333 ~Cgi~~~~~yp 343 (345)
.|||++.++++
T Consensus 230 ~cgi~~~~~~~ 240 (243)
T cd02621 230 ECGIESQAVFA 240 (243)
T ss_pred ccCcccceEee
Confidence 49999998653
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=9.7e-58 Score=413.23 Aligned_cols=214 Identities=26% Similarity=0.525 Sum_probs=182.8
Q ss_pred CCCceecccCC---CCCccccCC---CCcchHHHHHHHHHHHHHHHhcC---CCCcCChhHhhhcCCCCCCCCCCCCChH
Q 048276 123 VPSSMDSRENG---AVTPVKDQG---DCNCCWAFSSVAAVEGITKIETG---KLMSLSEQELVDCDTGSFDRGCTVGRMD 193 (345)
Q Consensus 123 lP~~~Dwr~~g---~vtpV~dQg---~cgsCwAfA~~~~le~~~~~~~~---~~~~lS~q~l~dc~~~~~~~gc~gG~~~ 193 (345)
||++||||+.+ +++|||||| .||||||||++++||+++.++++ ..+.||+|+|+||+. +.||+||++.
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~ 77 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPG 77 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHH
Confidence 69999999987 899999998 89999999999999999999875 357899999999986 6799999999
Q ss_pred HHHHHHHHcCCCCCCCcccccCCCCCCCCCCcc------------cCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEE
Q 048276 194 TAFEFIKNNNGLTTEADYPFVGNDYGACKTTKD------------ENDAAAATISGFKFVPANNEQALMQVVA-DQPVSV 260 (345)
Q Consensus 194 ~a~~~~~~~~Gi~~e~~yPY~~~~~~~c~~~~~------------~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v 260 (345)
.+++|+.++ |+++|++|||...+ +.|..... ......+++..|..++ ++++|+++|. +|||++
T Consensus 78 ~a~~~~~~~-Gl~~e~~yPY~~~~-~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v 153 (239)
T cd02698 78 GVYEYAHKH-GIPDETCNPYQAKD-GECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISC 153 (239)
T ss_pred HHHHHHHHc-CcCCCCeeCCcCCC-CCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEE
Confidence 999999986 99999999999876 66653110 0112345677777775 5778998887 899999
Q ss_pred EEecCCccccccccCeecCCCCCCCCCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCC-CCCCCcccccc
Q 048276 261 SIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVG-AQEGACGIAMM 339 (345)
Q Consensus 261 ~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~-~~~~~Cgi~~~ 339 (345)
+|.+. ++|+.|++|||+...|...++|||+|||||++.+|++|||||||||++|||+|||||+|+.. ...+.|||++.
T Consensus 154 ~i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~ 232 (239)
T cd02698 154 GIMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED 232 (239)
T ss_pred EEEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence 99998 59999999999988777778999999999987448999999999999999999999999971 11245999999
Q ss_pred cceec
Q 048276 340 ASYPT 344 (345)
Q Consensus 340 ~~yp~ 344 (345)
++|+.
T Consensus 233 ~~~~~ 237 (239)
T cd02698 233 CAWAD 237 (239)
T ss_pred eEEEe
Confidence 99874
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=2.5e-57 Score=403.13 Aligned_cols=208 Identities=55% Similarity=1.031 Sum_probs=189.7
Q ss_pred CCceecccCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHHHcC
Q 048276 124 PSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNN 203 (345)
Q Consensus 124 P~~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~~~~ 203 (345)
|++||||+.+.++||+|||.||+|||||++++||++++++++....||+|+|++|... .+.+|.||.+..|++++.+.
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~~~- 78 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVKNG- 78 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHHHC-
Confidence 8899999999999999999999999999999999999999998999999999999874 46899999999999988876
Q ss_pred CCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCeecCCCC
Q 048276 204 GLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEEC 282 (345)
Q Consensus 204 Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~ 282 (345)
|+++|++|||.... ..|+.. ......++.+|..+...+.++||++|. +|||++++.+. ++|+.|++|||..+.|
T Consensus 79 Gi~~e~~yPY~~~~-~~C~~~---~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~ 153 (210)
T cd02248 79 GLASESDYPYTGKD-GTCKYN---SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCC 153 (210)
T ss_pred CcCccccCCccCCC-CCccCC---CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCC
Confidence 99999999999877 889876 345678999999998767899999998 79999999998 6999999999999877
Q ss_pred -CCCCCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccccee
Q 048276 283 -GTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYP 343 (345)
Q Consensus 283 -~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~yp 343 (345)
...++|||+|||||++ .+.+|||||||||++||++|||||+|+.+ .|||++.+.||
T Consensus 154 ~~~~~~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~----~cgi~~~~~~~ 210 (210)
T cd02248 154 SNTNLNHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGSN----LCGIASYASYP 210 (210)
T ss_pred CCCcCCEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCCC----ccCceeeeecC
Confidence 4668999999999998 68899999999999999999999999873 49999998887
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.4e-56 Score=403.38 Aligned_cols=207 Identities=33% Similarity=0.668 Sum_probs=172.7
Q ss_pred CCceecccC--CCC--CccccCCCCcchHHHHHHHHHHHHHHHhcC--CCCcCChhHhhhcCCCCCCCCCCCCChHHHHH
Q 048276 124 PSSMDSREN--GAV--TPVKDQGDCNCCWAFSSVAAVEGITKIETG--KLMSLSEQELVDCDTGSFDRGCTVGRMDTAFE 197 (345)
Q Consensus 124 P~~~Dwr~~--g~v--tpV~dQg~cgsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~ 197 (345)
|++||||+. +++ +||+|||.||+|||||++++||+++.++++ ..+.||+|+|+||+.. .+.||+||++..|++
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 889999996 454 599999999999999999999999999887 7789999999999874 468999999999999
Q ss_pred HHHHcCCCCCCCcccccCCCCCC------------------CCCCccc-CCCcceEeeeeEEccCChHHHHHHHHh-CCC
Q 048276 198 FIKNNNGLTTEADYPFVGNDYGA------------------CKTTKDE-NDAAAATISGFKFVPANNEQALMQVVA-DQP 257 (345)
Q Consensus 198 ~~~~~~Gi~~e~~yPY~~~~~~~------------------c~~~~~~-~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gP 257 (345)
|++++ |+++|++|||...+ .. |...... ......++..+..+. .++++||.+|. +||
T Consensus 80 ~i~~~-G~~~e~~yPY~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GP 156 (236)
T cd02620 80 YLTTT-GVVTGGCQPYTIPP-CGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGP 156 (236)
T ss_pred HHHhc-CCCcCCEecCcCCC-CccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCC
Confidence 99987 99999999998865 32 2211100 011123444555554 47889999997 899
Q ss_pred eEEEEecCCccccccccCeecCCCCC-CCCCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccc
Q 048276 258 VSVSIDSSGYMFQFYSSGIIKSEECG-TDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGI 336 (345)
Q Consensus 258 V~v~~~~~~~~f~~y~~Gi~~~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi 336 (345)
|+++|.+. ++|+.|++|||+.+ |. ..++|||+|||||++ +|++|||||||||++|||+|||||+|+.+ .|||
T Consensus 157 v~v~i~~~-~~f~~Y~~Giy~~~-~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~~----~cgi 229 (236)
T cd02620 157 VQAAFTVY-EDFLYYKSGVYQHT-SGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGSN----ECGI 229 (236)
T ss_pred eEEEEEec-hhhhhcCCcEEeec-CCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccCc----cccc
Confidence 99999997 79999999999876 44 457999999999988 88999999999999999999999999863 4999
Q ss_pred ccccc
Q 048276 337 AMMAS 341 (345)
Q Consensus 337 ~~~~~ 341 (345)
++.++
T Consensus 230 ~~~~~ 234 (236)
T cd02620 230 ESEVV 234 (236)
T ss_pred cccee
Confidence 99875
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.3e-55 Score=393.65 Aligned_cols=215 Identities=43% Similarity=0.838 Sum_probs=184.2
Q ss_pred CCCceecccC-CCCCccccCCCCcchHHHHHHHHHHHHHHHhc-CCCCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHH
Q 048276 123 VPSSMDSREN-GAVTPVKDQGDCNCCWAFSSVAAVEGITKIET-GKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIK 200 (345)
Q Consensus 123 lP~~~Dwr~~-g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~ 200 (345)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|.. ..+.+|+||++..|+++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~ 79 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIK 79 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeec
Confidence 7999999998 48999999999999999999999999999999 7889999999999997 2367999999999999999
Q ss_pred HcCCCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCeecC
Q 048276 201 NNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKS 279 (345)
Q Consensus 201 ~~~Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~ 279 (345)
++.|+++|++|||.......|.... ......++..|..+...+.++||++|. +|||++++.+..++|+.|++|||..
T Consensus 80 ~~~Gi~~e~~~pY~~~~~~~c~~~~--~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~ 157 (219)
T PF00112_consen 80 NNNGIVTEEDYPYNGNENPTCKSKK--SNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDP 157 (219)
T ss_dssp HHTSBEBTTTS--SSSSSCSSCHSG--GGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECS
T ss_pred ccCcccccccccccccccccccccc--cccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeec
Confidence 8349999999999986635677652 111247888999988767999999998 6999999999944699999999999
Q ss_pred CCCC-CCCCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceec
Q 048276 280 EECG-TDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344 (345)
Q Consensus 280 ~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~yp~ 344 (345)
++|. ..++|||+|||||++ .+++|||||||||++||++|||||+|+.++ +|||++.++||+
T Consensus 158 ~~~~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~---~c~i~~~~~~~~ 219 (219)
T PF00112_consen 158 PDCSNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYNN---ECGIESQAVYPI 219 (219)
T ss_dssp TSSSSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSSS---GGGTTSSEEEEE
T ss_pred cccccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCCC---cCccCceeeecC
Confidence 8787 478999999999998 689999999999999999999999999863 599999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=6.9e-54 Score=424.25 Aligned_cols=216 Identities=25% Similarity=0.517 Sum_probs=178.6
Q ss_pred CCCCCCceecccC----CCCCccccCCCCcchHHHHHHHHHHHHHHHhcCC-----C-----CcCChhHhhhcCCCCCCC
Q 048276 120 VTDVPSSMDSREN----GAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGK-----L-----MSLSEQELVDCDTGSFDR 185 (345)
Q Consensus 120 ~~~lP~~~Dwr~~----g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~-----~-----~~lS~q~l~dc~~~~~~~ 185 (345)
..+||++||||+. +.++||+|||.||||||||++++||++++|+.++ . ..||+|+|+||+.. +.
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~--nq 455 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY--DQ 455 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC--CC
Confidence 4589999999984 6799999999999999999999999999998643 1 27999999999874 78
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCcccC------------------------------------C
Q 048276 186 GCTVGRMDTAFEFIKNNNGLTTEADYPFVGNDYGACKTTKDEN------------------------------------D 229 (345)
Q Consensus 186 gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~c~~~~~~~------------------------------------~ 229 (345)
||+||.+..|++|+.++ ||++|++|||.+.. +.|+...... .
T Consensus 456 GC~GG~~~~A~kya~~~-GI~tEscYPY~a~~-g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (693)
T PTZ00049 456 GCNGGFPYLVSKMAKLQ-GIPLDKVFPYTATE-QTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSE 533 (693)
T ss_pred CcCCCcHHHHHHHHHHC-CCCcCCccCCcCCC-CCCCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999886 99999999999877 7786432100 0
Q ss_pred CcceEeeeeEEcc-------CChHHHHHHHHh-CCCeEEEEecCCccccccccCeecCC------CCCC-----------
Q 048276 230 AAAATISGFKFVP-------ANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSE------ECGT----------- 284 (345)
Q Consensus 230 ~~~~~i~~~~~~~-------~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~------~~~~----------- 284 (345)
...+.++.|..+. ..++++|+++|. +|||+|+|++. ++|++|++|||+.+ .|..
T Consensus 534 ~~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~ 612 (693)
T PTZ00049 534 PARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNI 612 (693)
T ss_pred ccceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccc
Confidence 1123455666653 146788999988 89999999998 68999999999864 2632
Q ss_pred ----CCCeEEEEEEecccC-CCc--cEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceec
Q 048276 285 ----DIDHGVTAIGYGASS-DGT--KYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMASYPT 344 (345)
Q Consensus 285 ----~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~yp~ 344 (345)
.++|||+|||||.+. +|. +|||||||||++||++|||||.|+.+ .|||++.++|+.
T Consensus 613 ~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N----~CGIEs~a~~~~ 675 (693)
T PTZ00049 613 TGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKN----FSGIESQSLFIE 675 (693)
T ss_pred cccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCC----ccCCccceeEEe
Confidence 369999999999753 453 79999999999999999999999974 499999999864
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.2e-53 Score=416.81 Aligned_cols=208 Identities=23% Similarity=0.466 Sum_probs=174.7
Q ss_pred CCCCCceecccCC---CCCccccCCC---CcchHHHHHHHHHHHHHHHhcC------CCCcCChhHhhhcCCCCCCCCCC
Q 048276 121 TDVPSSMDSRENG---AVTPVKDQGD---CNCCWAFSSVAAVEGITKIETG------KLMSLSEQELVDCDTGSFDRGCT 188 (345)
Q Consensus 121 ~~lP~~~Dwr~~g---~vtpV~dQg~---cgsCwAfA~~~~le~~~~~~~~------~~~~lS~q~l~dc~~~~~~~gc~ 188 (345)
.+||++||||+.| +++||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+.. +.||+
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~--n~GCd 280 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY--GQGCA 280 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC--CCCCC
Confidence 5799999999987 7999999999 9999999999999999999873 4688999999999864 78999
Q ss_pred CCChHHHHHHHHHcCCCCCCCcc--cccCCCCC---CCCCCcccCCCcceEee------eeEEccCChHHHHHHHHh-CC
Q 048276 189 VGRMDTAFEFIKNNNGLTTEADY--PFVGNDYG---ACKTTKDENDAAAATIS------GFKFVPANNEQALMQVVA-DQ 256 (345)
Q Consensus 189 gG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~~---~c~~~~~~~~~~~~~i~------~~~~~~~~~~~~i~~~l~-~g 256 (345)
||++..|++|+.++ ||++|++| ||.+.+ + .|.... ....+.+. +|..+. +++++|+.+|. +|
T Consensus 281 GG~p~~A~~yi~~~-GI~tE~dY~~PY~~~d-g~~~~Ck~~~---~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~G 354 (548)
T PTZ00364 281 GGFPEEVGKFAETF-GILTTDSYYIPYDSGD-GVERACKTRR---PSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHG 354 (548)
T ss_pred CCcHHHHHHHHHhC-CcccccccCCCCCCCC-CCCCCCCCCc---ccceeeeeeeEEecceeecC-CcHHHHHHHHHHcC
Confidence 99999999999886 99999999 998765 4 576542 22333333 343333 46788999987 89
Q ss_pred CeEEEEecCCccccccccCeecCC--------CC-----------CCCCCeEEEEEEecccCCCccEEEEEcCCCC--CC
Q 048276 257 PVSVSIDSSGYMFQFYSSGIIKSE--------EC-----------GTDIDHGVTAIGYGASSDGTKYWLVKNSWGT--GW 315 (345)
Q Consensus 257 PV~v~~~~~~~~f~~y~~Gi~~~~--------~~-----------~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~--~W 315 (345)
||+|+|++. .+|+.|++|||... .| ...++|||+|||||.+++|.+|||||||||+ +|
T Consensus 355 PVsVaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~W 433 (548)
T PTZ00364 355 PVPASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSW 433 (548)
T ss_pred CeEEEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCc
Confidence 999999998 68999999987621 12 1347999999999986578899999999999 99
Q ss_pred CCCceEEEEecCCCCCCCcccccccc
Q 048276 316 GEGGYVRIQREVGAQEGACGIAMMAS 341 (345)
Q Consensus 316 G~~GY~~i~~~~~~~~~~Cgi~~~~~ 341 (345)
||+|||||+|+.| .|||++.++
T Consensus 434 GE~GYfRI~RG~N----~CGIes~~v 455 (548)
T PTZ00364 434 CDGGTRKIARGVN----AYNIESEVV 455 (548)
T ss_pred ccCCeEEEEcCCC----cccccceee
Confidence 9999999999974 499999987
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.5e-50 Score=346.67 Aligned_cols=169 Identities=57% Similarity=1.065 Sum_probs=149.6
Q ss_pred CCCceecccCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHHHc
Q 048276 123 VPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNN 202 (345)
Q Consensus 123 lP~~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~~~ 202 (345)
||++||||+.++++||+|||.||+|||||+++++|++++++++..++||+|+|++|... .+.+|+||.+..|++|++++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~ 79 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKN 79 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999998999999999999875 46699999999999999886
Q ss_pred CCCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHhCCCeEEEEecCCccccccccCeecCCCC
Q 048276 203 NGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVADQPVSVSIDSSGYMFQFYSSGIIKSEEC 282 (345)
Q Consensus 203 ~Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Gi~~~~~~ 282 (345)
.|+++|++|||.. ++.+.+. +|+.|++|||+.++|
T Consensus 80 ~Gi~~e~~~PY~~-------------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~ 114 (174)
T smart00645 80 GGLETESCYPYTG-------------------------------------------SVAIDAS--DFQFYKSGIYDHPGC 114 (174)
T ss_pred CCcccccccCccc-------------------------------------------EEEEEcc--cccCCcCeEECCCCC
Confidence 5899999999944 4555554 599999999998768
Q ss_pred CCC-CCeEEEEEEecccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccc
Q 048276 283 GTD-IDHGVTAIGYGASSDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMA 340 (345)
Q Consensus 283 ~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~ 340 (345)
... ++|+|+|||||.+.+|++|||||||||+.|||+|||||+|+.. +.|||+...
T Consensus 115 ~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~~ 170 (174)
T smart00645 115 GSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEASV 170 (174)
T ss_pred CCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceeee
Confidence 644 7999999999976468899999999999999999999999862 349995543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=4.8e-47 Score=339.14 Aligned_cols=199 Identities=32% Similarity=0.512 Sum_probs=169.2
Q ss_pred ceecccCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcC--CCCcCChhHhhhcCCCCC---CCCCCCCChHHHHH-HH
Q 048276 126 SMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETG--KLMSLSEQELVDCDTGSF---DRGCTVGRMDTAFE-FI 199 (345)
Q Consensus 126 ~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~~---~~gc~gG~~~~a~~-~~ 199 (345)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.. ..++||+|+|++|..... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999987 889999999999987532 36999999999998 77
Q ss_pred HHcCCCCCCCcccccCCCCCCCCCCc-ccCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCee
Q 048276 200 KNNNGLTTEADYPFVGNDYGACKTTK-DENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGII 277 (345)
Q Consensus 200 ~~~~Gi~~e~~yPY~~~~~~~c~~~~-~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~ 277 (345)
+.+ |+++|++|||.... ..|.... ........++..|..+...++++||++|. +|||++++.+. ..|..|++|++
T Consensus 80 ~~~-Gi~~e~~~Py~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~ 156 (223)
T cd02619 80 ALK-GIPPEEDYPYGAES-DGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGII 156 (223)
T ss_pred HHc-CCCccccCCCCCCC-CCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCccc
Confidence 765 99999999999877 5554321 11334568889999888777899999998 79999999998 79999999987
Q ss_pred c-----CCCCC-CCCCeEEEEEEecccC-CCccEEEEEcCCCCCCCCCceEEEEecCC
Q 048276 278 K-----SEECG-TDIDHGVTAIGYGASS-DGTKYWLVKNSWGTGWGEGGYVRIQREVG 328 (345)
Q Consensus 278 ~-----~~~~~-~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~GY~~i~~~~~ 328 (345)
. ...+. ..++|||+|||||++. .+++|||||||||+.||++||+||+|+..
T Consensus 157 ~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~~ 214 (223)
T cd02619 157 YEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYEDV 214 (223)
T ss_pred cccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhhh
Confidence 3 22233 4579999999999973 27899999999999999999999999863
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=373.18 Aligned_cols=204 Identities=22% Similarity=0.467 Sum_probs=162.0
Q ss_pred CCccccCCCCcchHHHHHHHHHHHHHHHhcCCCCcCChhHhhhcCCCCCCCCCCCCC-hHHHHHHHHHcCCCCCCCcccc
Q 048276 135 VTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQELVDCDTGSFDRGCTVGR-MDTAFEFIKNNNGLTTEADYPF 213 (345)
Q Consensus 135 vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~gG~-~~~a~~~~~~~~Gi~~e~~yPY 213 (345)
..||+|||.||+|||||+++++|++++++++..+.||+|+|+||+...++.||.||+ +..++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 579999999999999999999999999999999999999999998765578999997 4456689988766899999999
Q ss_pred cC--CCCCCCCCCccc---------------CCCcceEeeeeEEccCC----h----HHHHHHHHh-CCCeEEEEecCCc
Q 048276 214 VG--NDYGACKTTKDE---------------NDAAAATISGFKFVPAN----N----EQALMQVVA-DQPVSVSIDSSGY 267 (345)
Q Consensus 214 ~~--~~~~~c~~~~~~---------------~~~~~~~i~~~~~~~~~----~----~~~i~~~l~-~gPV~v~~~~~~~ 267 (345)
.. .. +.|+..... .......+.+|..+... + +++|+++|+ +|||+|+|++.
T Consensus 624 t~k~~~-g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs-- 700 (1004)
T PTZ00462 624 NYTKVG-EDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE-- 700 (1004)
T ss_pred ccCCCC-CCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--
Confidence 75 34 678743210 00112334566655431 1 367899998 79999999986
Q ss_pred cccccc-cCeecCCCCCC-CCCeEEEEEEeccc----CCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccc
Q 048276 268 MFQFYS-SGIIKSEECGT-DIDHGVTAIGYGAS----SDGTKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMAS 341 (345)
Q Consensus 268 ~f~~y~-~Gi~~~~~~~~-~~~Hav~iVGyg~~----~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~ 341 (345)
+|+.|. +|||....|+. .++|||+|||||.+ .+|++|||||||||+.|||+|||||.|... +.|||.....
T Consensus 701 df~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~---n~CGin~i~t 777 (1004)
T PTZ00462 701 NVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP---SHCEDNFIHS 777 (1004)
T ss_pred hHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC---CCCccchhee
Confidence 688884 89987777974 57999999999974 236789999999999999999999998533 4599988777
Q ss_pred eec
Q 048276 342 YPT 344 (345)
Q Consensus 342 yp~ 344 (345)
+|+
T Consensus 778 ~~~ 780 (1004)
T PTZ00462 778 VVI 780 (1004)
T ss_pred eee
Confidence 765
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=7.6e-40 Score=292.29 Aligned_cols=259 Identities=28% Similarity=0.505 Sum_probs=191.7
Q ss_pred CCceeee-cccCCCCCHHHHHhHhcccccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCceecccC--CCCCccccCCCC
Q 048276 68 YRGYKLA-VNKFADLTNDEFRSMYAGYDWQNQNSPVISTSDPDASSPMDANSTVTDVPSSMDSREN--GAVTPVKDQGDC 144 (345)
Q Consensus 68 ~~~~~~g-~N~fsDlt~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~vtpV~dQg~c 144 (345)
+.+|..+ ..+|-.||.++=.+..+|.. +|.... .+..+.... .+...+||+.||-|++ +++.|+.|||.|
T Consensus 160 ~YgW~A~NYSaFWGmtL~DGiKyRLGTL---~Ps~sv-~nMNEi~~~---l~p~~~LPE~F~As~KWp~liH~plDQgnC 232 (470)
T KOG1544|consen 160 NYGWQAGNYSAFWGMTLDDGIKYRLGTL---RPSSSV-MNMNEIYTV---LNPGEVLPEAFEASEKWPNLIHEPLDQGNC 232 (470)
T ss_pred Cccccccchhhhhcccccccceeeeccc---Cchhhh-hhHHhHhhc---cCcccccchhhhhhhcCCccccCccccCCc
Confidence 3455543 34788888887666556655 333221 110000011 2334589999999997 899999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcCC--CCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcccccCCC---CC
Q 048276 145 NCCWAFSSVAAVEGITKIETGK--LMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADYPFVGND---YG 219 (345)
Q Consensus 145 gsCwAfA~~~~le~~~~~~~~~--~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~---~~ 219 (345)
++.|||+++++...+++|+... ...||+|+|++|... ...||+||..+.|+=||.+. |++...+|||...+ .+
T Consensus 233 a~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~~~ 310 (470)
T KOG1544|consen 233 AGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQAGPAP 310 (470)
T ss_pred ccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecc-cccccccccccCCCCCCCC
Confidence 9999999999999999988754 468999999999765 57899999999999999886 99999999997632 12
Q ss_pred CCCCCcc-----------------cCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCeecCCC
Q 048276 220 ACKTTKD-----------------ENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEE 281 (345)
Q Consensus 220 ~c~~~~~-----------------~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~ 281 (345)
.|-..+- ..+...++.+.-..++ .++++|++.|. +|||-+.+.|- ++|+.|++|||.+.+
T Consensus 311 ~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGiY~H~~ 388 (470)
T KOG1544|consen 311 PCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGGIYSHTP 388 (470)
T ss_pred CceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhccceeeccc
Confidence 3322110 0111233333333344 36777777776 99999999998 899999999998864
Q ss_pred CC--------CCCCeEEEEEEeccc--CCC--ccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccc
Q 048276 282 CG--------TDIDHGVTAIGYGAS--SDG--TKYWLVKNSWGTGWGEGGYVRIQREVGAQEGACGIAMMAS 341 (345)
Q Consensus 282 ~~--------~~~~Hav~iVGyg~~--~~g--~~ywivkNSWG~~WG~~GY~~i~~~~~~~~~~Cgi~~~~~ 341 (345)
.. ..+.|+|.|.|||.+ ++| .+|||..||||+.|||+|||||.|+.|+ |-|+++.+
T Consensus 389 ~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNe----cdIEsfvI 456 (470)
T KOG1544|consen 389 VSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNE----CDIESFVI 456 (470)
T ss_pred cccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccc----hhhhHhhh
Confidence 33 246899999999987 233 4699999999999999999999999865 99998764
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.3e-32 Score=247.89 Aligned_cols=199 Identities=28% Similarity=0.464 Sum_probs=135.2
Q ss_pred CCCCceecccCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCCcCChhH-----hhhcCCCCCCCC-CCCCChHHH
Q 048276 122 DVPSSMDSRENGAVTPVKDQGDCNCCWAFSSVAAVEGITKIETGKLMSLSEQE-----LVDCDTGSFDRG-CTVGRMDTA 195 (345)
Q Consensus 122 ~lP~~~Dwr~~g~vtpV~dQg~cgsCwAfA~~~~le~~~~~~~~~~~~lS~q~-----l~dc~~~~~~~g-c~gG~~~~a 195 (345)
.+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ...+|+-. .+-|... +..+ -+||....+
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~-fd~~~~d~g~~~m~ 174 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKG-FDYTSNDGGNADMS 174 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCcccc-CCCccccCCccccc
Confidence 4899999999999999999999999999999999999876443 33344333 3333332 2222 347788888
Q ss_pred HHHHHHcCCCCCCCcccccCCCCCCCCCCcccCCCcceEeeeeEEccCC----hHHHHHHHHh-CCCeEEEEecCCcccc
Q 048276 196 FEFIKNNNGLTTEADYPFVGNDYGACKTTKDENDAAAATISGFKFVPAN----NEQALMQVVA-DQPVSVSIDSSGYMFQ 270 (345)
Q Consensus 196 ~~~~~~~~Gi~~e~~yPY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~----~~~~i~~~l~-~gPV~v~~~~~~~~f~ 270 (345)
..|+.+..|.+.|.+-||.... -.|+... ....++..-..++.. +.-.|++++. .|-+...+.+....+.
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s-~~~~~~~----p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~ 249 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENS-YFSPTNL----PVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSL 249 (372)
T ss_pred cccccccCCcchhhcCcccccc-ccCCcCC----chhhccccceecccchhhhcccchHHHHhhhccccceeEEeccccc
Confidence 8888888899999999998876 4454431 111222222233321 2233666665 5655533333212333
Q ss_pred ccccCeecCCCCCCCCCeEEEEEEeccc---------CCCccEEEEEcCCCCCCCCCceEEEEecCCC
Q 048276 271 FYSSGIIKSEECGTDIDHGVTAIGYGAS---------SDGTKYWLVKNSWGTGWGEGGYVRIQREVGA 329 (345)
Q Consensus 271 ~y~~Gi~~~~~~~~~~~Hav~iVGyg~~---------~~g~~ywivkNSWG~~WG~~GY~~i~~~~~~ 329 (345)
....+.+... -....+|||+||||||. +.|.++||||||||++||++|||||+|..-.
T Consensus 250 ~~~~~~~~~~-s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~ 316 (372)
T COG4870 250 GICIPYPYVD-SGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYAL 316 (372)
T ss_pred ccccCCCCCC-ccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecc
Confidence 3333444433 22668999999999986 3478899999999999999999999998754
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=6.1e-24 Score=204.86 Aligned_cols=185 Identities=23% Similarity=0.341 Sum_probs=129.5
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHh-cCCCCcCChhHhhh----------------cCCCC----------CCCCCC
Q 048276 136 TPVKDQGDCNCCWAFSSVAAVEGITKIE-TGKLMSLSEQELVD----------------CDTGS----------FDRGCT 188 (345)
Q Consensus 136 tpV~dQg~cgsCwAfA~~~~le~~~~~~-~~~~~~lS~q~l~d----------------c~~~~----------~~~gc~ 188 (345)
.||+||++.|.||.||+...|++.+... +.+.+.||+.++.. +.... .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4999999999999999999999988764 55789999988755 21100 134568
Q ss_pred CCChHHHHHHHHHcCCCCCCCcccccCC--C-------------------------------------------------
Q 048276 189 VGRMDTAFEFIKNNNGLTTEADYPFVGN--D------------------------------------------------- 217 (345)
Q Consensus 189 gG~~~~a~~~~~~~~Gi~~e~~yPY~~~--~------------------------------------------------- 217 (345)
||....+...+.+. |+++.+.||-+.. .
T Consensus 135 GGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988875 9999999984310 0
Q ss_pred -CCCCCCCcc--------------------------------------cC-----CCcceEe-----------eeeEEcc
Q 048276 218 -YGACKTTKD--------------------------------------EN-----DAAAATI-----------SGFKFVP 242 (345)
Q Consensus 218 -~~~c~~~~~--------------------------------------~~-----~~~~~~i-----------~~~~~~~ 242 (345)
.|..+...+ .+ -...+.+ ..|..++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 000000000 00 0000000 1122222
Q ss_pred CChHHHHH----HHHh-CCCeEEEEecCCccccccccCeecCC---------------------CCCCCCCeEEEEEEec
Q 048276 243 ANNEQALM----QVVA-DQPVSVSIDSSGYMFQFYSSGIIKSE---------------------ECGTDIDHGVTAIGYG 296 (345)
Q Consensus 243 ~~~~~~i~----~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~---------------------~~~~~~~Hav~iVGyg 296 (345)
.+.|+ ++|. .+||.++++++ .|..|++||+... .|.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 34444 4566 57999999997 5779999999653 1234578999999999
Q ss_pred ccCCCc-cEEEEEcCCCCCCCCCceEEEEec
Q 048276 297 ASSDGT-KYWLVKNSWGTGWGEGGYVRIQRE 326 (345)
Q Consensus 297 ~~~~g~-~ywivkNSWG~~WG~~GY~~i~~~ 326 (345)
.+.+|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 886676 699999999999999999999875
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.72 E-value=7.9e-17 Score=155.76 Aligned_cols=185 Identities=23% Similarity=0.351 Sum_probs=107.3
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcC-CCCcCChhHhh----------------hcCCCC----------CCCCCC
Q 048276 136 TPVKDQGDCNCCWAFSSVAAVEGITKIETG-KLMSLSEQELV----------------DCDTGS----------FDRGCT 188 (345)
Q Consensus 136 tpV~dQg~cgsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~----------------dc~~~~----------~~~gc~ 188 (345)
.||.||.+.|.||.||+...++..+..+.+ +.+.||+.++. ++.... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999887765 78999998874 332211 123467
Q ss_pred CCChHHHHHHHHHcCCCCCCCcccccCCC---------------------------------------------------
Q 048276 189 VGRMDTAFEFIKNNNGLTTEADYPFVGND--------------------------------------------------- 217 (345)
Q Consensus 189 gG~~~~a~~~~~~~~Gi~~e~~yPY~~~~--------------------------------------------------- 217 (345)
||....+..-+++. |+|+.+.||-....
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888875 99999999843200
Q ss_pred -CCCCCCCccc--------------------------------------C-----CCcceEe-----------eeeEEcc
Q 048276 218 -YGACKTTKDE--------------------------------------N-----DAAAATI-----------SGFKFVP 242 (345)
Q Consensus 218 -~~~c~~~~~~--------------------------------------~-----~~~~~~i-----------~~~~~~~ 242 (345)
.|.++...+- + -...+.+ ..|..++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 0001100000 0 0000000 0111221
Q ss_pred CChHHHHH----HHHhCC-CeEEEEecCCccccccccCeecCCCC---------------------CCCCCeEEEEEEec
Q 048276 243 ANNEQALM----QVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEEC---------------------GTDIDHGVTAIGYG 296 (345)
Q Consensus 243 ~~~~~~i~----~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~---------------------~~~~~Hav~iVGyg 296 (345)
.+.|+ ++|..| ||..+.++. . +...+.||.+...- .+..+|||+|+|.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 34444 445544 999999998 3 45667788754310 13358999999999
Q ss_pred ccCCCc-cEEEEEcCCCCCCCCCceEEEEec
Q 048276 297 ASSDGT-KYWLVKNSWGTGWGEGGYVRIQRE 326 (345)
Q Consensus 297 ~~~~g~-~ywivkNSWG~~WG~~GY~~i~~~ 326 (345)
.+.+|+ .+|+|+||||+..|.+||+.|+.+
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 977887 499999999999999999999853
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.44 E-value=1.6e-13 Score=96.32 Aligned_cols=47 Identities=34% Similarity=0.564 Sum_probs=41.1
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHhhc-----------CCceeeecccCCCCCHHHH
Q 048276 40 HEQWMAQHGLVYADEAEKAETAYDFRRQ-----------YRGYKLAVNKFADLTNDEF 86 (345)
Q Consensus 40 f~~~~~~~~k~Y~~~~e~~~R~~iF~~n-----------~~~~~~g~N~fsDlt~eE~ 86 (345)
|++|+++|+|+|.+.+|+.+|+.||++| +.+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999998 5789999999999999997
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.18 E-value=1.7e-11 Score=85.50 Aligned_cols=46 Identities=39% Similarity=0.642 Sum_probs=42.7
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHhhc-----------CCceeeecccCCCCCHHH
Q 048276 40 HEQWMAQHGLVYADEAEKAETAYDFRRQ-----------YRGYKLAVNKFADLTNDE 85 (345)
Q Consensus 40 f~~~~~~~~k~Y~~~~e~~~R~~iF~~n-----------~~~~~~g~N~fsDlt~eE 85 (345)
|.+|+++|+|.|.+.+|...|+.+|.+| +.+|++|+|+|||||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 6789999999999999999999999998 368999999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.83 E-value=1.5e-08 Score=92.64 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=55.4
Q ss_pred HHHHHHH----HhCC-CeEEEEecCCccccccccCeecCCCC---------------C------CCCCeEEEEEEecccC
Q 048276 246 EQALMQV----VADQ-PVSVSIDSSGYMFQFYSSGIIKSEEC---------------G------TDIDHGVTAIGYGASS 299 (345)
Q Consensus 246 ~~~i~~~----l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~---------------~------~~~~Hav~iVGyg~~~ 299 (345)
.+.+|++ +..| ||-.+.++. .+..-+.||.+...- + +-..|||+|.|.+.++
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 4555554 3334 888888886 566667776543210 0 1136999999999887
Q ss_pred CCcc-EEEEEcCCCCCCCCCceEEEE
Q 048276 300 DGTK-YWLVKNSWGTGWGEGGYVRIQ 324 (345)
Q Consensus 300 ~g~~-ywivkNSWG~~WG~~GY~~i~ 324 (345)
+|.+ -|.|.||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 7655 799999999999999999876
No 23
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.78 E-value=0.016 Score=49.03 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=68.9
Q ss_pred cCCCCcchHHHHHHHHHHHHHHH--------hcCCCCcCChhHhhhcCCCCCCCCCCCCChHHHHHHHHHcCCCCCCCcc
Q 048276 140 DQGDCNCCWAFSSVAAVEGITKI--------ETGKLMSLSEQELVDCDTGSFDRGCTVGRMDTAFEFIKNNNGLTTEADY 211 (345)
Q Consensus 140 dQg~cgsCwAfA~~~~le~~~~~--------~~~~~~~lS~q~l~dc~~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~y 211 (345)
.||.-+-|-+||.++.|-..... .+.-...+|+++|.+++. .+.+.++|.+.. |...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~-g~~~---- 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQ-GRNP---- 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHT-TEEE----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHc-Ccch----
Confidence 48999999999999988764321 112245678888877643 345777887654 4311
Q ss_pred cccCCCCCCCCCCcccCCCcceEeeeeEEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCeecCCCCCCCCCeEE
Q 048276 212 PFVGNDYGACKTTKDENDAAAATISGFKFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGV 290 (345)
Q Consensus 212 PY~~~~~~~c~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav 290 (345)
.+..- ..+.+++++.+. +.|+.+..+.... .-+...+||+
T Consensus 83 -------------------------~~~n~-~~s~~eV~~~~~~nk~i~i~~~~v~~-------------~~~~~~gHAl 123 (175)
T PF05543_consen 83 -------------------------QYNNR-MPSFDEVKKLIDNNKGIAILADRVEQ-------------TNGPHAGHAL 123 (175)
T ss_dssp -------------------------EEECS----HHHHHHHHHTT-EEEEEEEETTS-------------CTTB--EEEE
T ss_pred -------------------------hHhcC-CCCHHHHHHHHHcCCCeEEEeccccc-------------CCCCccceeE
Confidence 01100 014677888887 6788876654310 0223579999
Q ss_pred EEEEecccCCCccEEEEEcCCC
Q 048276 291 TAIGYGASSDGTKYWLVKNSWG 312 (345)
Q Consensus 291 ~iVGyg~~~~g~~ywivkNSWG 312 (345)
+||||-.-.+|.++.++=|=|-
T Consensus 124 avvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 124 AVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEEEEEETTSEEEEEEE-TT-
T ss_pred EEEeeeecCCCCeEEEEeCCcc
Confidence 9999987557789999988773
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=95.99 E-value=0.074 Score=43.02 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=33.1
Q ss_pred ChHHHHHHHHhC-CCeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEecccCCCccEEEEEcCC
Q 048276 244 NNEQALMQVVAD-QPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSW 311 (345)
Q Consensus 244 ~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 311 (345)
.+.+.|++.|.. .||.+.+....... .++.+. ....+|.|+|+||+.+ + +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~----~~~~~H~vvi~Gy~~~--~--~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD----GTYGGHYVVIIGYDED--G--YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE----E-TTEEEEEEEEE-SS--E---EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC----CCcCCEEEEEEEEeCC--C--EEEEeCCC
Confidence 467889999985 59999997431111 111111 1347999999999985 2 78888877
No 25
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=93.52 E-value=0.049 Score=50.54 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=54.9
Q ss_pred CCccccCCCCcchHHHHHHHHHHHHHHHhc-CCCCcCChhHhhh--------------------cCCC--------CCCC
Q 048276 135 VTPVKDQGDCNCCWAFSSVAAVEGITKIET-GKLMSLSEQELVD--------------------CDTG--------SFDR 185 (345)
Q Consensus 135 vtpV~dQg~cgsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~d--------------------c~~~--------~~~~ 185 (345)
-+||.||.+.|-||.|+....+--.+..+- -..+.||..+|+. |... ..+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 369999999999999999988754443332 2467888888742 2211 0133
Q ss_pred CCCCCChHHHHHHHHHcCCCCCCCcccc
Q 048276 186 GCTVGRMDTAFEFIKNNNGLTTEADYPF 213 (345)
Q Consensus 186 gc~gG~~~~a~~~~~~~~Gi~~e~~yPY 213 (345)
.-+||....-.+.+++ +|+.+..+||-
T Consensus 142 ~~DGGqw~MfvNlVkK-YGviPKkcy~~ 168 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKK-YGVIPKKCYLH 168 (457)
T ss_pred CCCCchHHHHHHHHHH-hCCCcHHhccc
Confidence 3468887777777776 59999999983
No 26
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.91 E-value=1.1 Score=41.86 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=34.7
Q ss_pred HHHHHHHHhCC-CeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEecccCCCccEEEEE
Q 048276 246 EQALMQVVADQ-PVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVK 308 (345)
Q Consensus 246 ~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~g~~ywivk 308 (345)
.+.|+++|.+| ||.+.++.. +..|...-+ .....+|.|+|+||+++ ++.+.++-
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~----~~~~~~H~i~v~G~d~~--~~~~~v~D 132 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY----KKHHADHYIVVYGYDEE--EDVFYVSD 132 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc----ccccCCcEEEEEEEeCC--CCEEEEEc
Confidence 35678888866 999998776 333332211 12346899999999975 23455553
No 27
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=84.98 E-value=3.4 Score=36.49 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=35.6
Q ss_pred hHHHHHHHHh-CCCeEEEEecCCcccc--ccccCeec--CCCC----CCCCCeEEEEEEecccCCCccEEEEEc
Q 048276 245 NEQALMQVVA-DQPVSVSIDSSGYMFQ--FYSSGIIK--SEEC----GTDIDHGVTAIGYGASSDGTKYWLVKN 309 (345)
Q Consensus 245 ~~~~i~~~l~-~gPV~v~~~~~~~~f~--~y~~Gi~~--~~~~----~~~~~Hav~iVGyg~~~~g~~ywivkN 309 (345)
..++|...|. .||+.+-++.. -.. .-+..... .+.| ....+|-|+|+||+.+ .+-++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~---~~~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA---TKEFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCC---CCeEEEeC
Confidence 4788888888 56777777655 111 00111111 1112 1457999999999976 23466676
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.43 E-value=6.9 Score=33.51 Aligned_cols=52 Identities=13% Similarity=0.170 Sum_probs=36.8
Q ss_pred EEccCChHHHHHHHHh-CCCeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEecccCCCccEEEEEcCCC
Q 048276 239 KFVPANNEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWG 312 (345)
Q Consensus 239 ~~~~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 312 (345)
..++..+..+|+..|. ..||.+-.... .. ..-|+|+|.|||+. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~~----~~-------------~s~H~v~itgyDk~-----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTNF----HS-------------YSIHSVLITGYDKY-----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEecc----cc-------------cceeeeEeeccccc-----ceEeccccc
Confidence 3456678999999988 56988765432 21 34799999999974 455567774
No 29
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=75.55 E-value=0.37 Score=44.90 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=49.0
Q ss_pred hHHHHHHHH----h-CCCeEEEEecCCccccccccCeecC-----C--------CCC---------CCCCeEEEEEEecc
Q 048276 245 NEQALMQVV----A-DQPVSVSIDSSGYMFQFYSSGIIKS-----E--------ECG---------TDIDHGVTAIGYGA 297 (345)
Q Consensus 245 ~~~~i~~~l----~-~gPV~v~~~~~~~~f~~y~~Gi~~~-----~--------~~~---------~~~~Hav~iVGyg~ 297 (345)
+.+.|++.+ . +-||-.+.++. -+..-++|+.+- + +.. +-..|||++.|-+.
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~--k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIR--KAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccH--hhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 355566654 2 23787777765 455556664321 1 100 11379999999883
Q ss_pred -cC--CCccEEEEEcCCCCCCCCCceEEEE
Q 048276 298 -SS--DGTKYWLVKNSWGTGWGEGGYVRIQ 324 (345)
Q Consensus 298 -~~--~g~~ywivkNSWG~~WG~~GY~~i~ 324 (345)
++ .+-.-|-|.||||.+-|.+||..+.
T Consensus 383 kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCcccCCchhhhhhchhhhhccccchhhhh
Confidence 32 2333689999999999999996553
No 30
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=73.48 E-value=2.9 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=13.9
Q ss_pred CCceeeecccCCCCCHHHHHhHhcccc
Q 048276 68 YRGYKLAVNKFADLTNDEFRSMYAGYD 94 (345)
Q Consensus 68 ~~~~~~g~N~fsDlt~eE~~~~~~~~~ 94 (345)
+.+|++|.| |.+.+.+.++.+ +|..
T Consensus 13 ~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 13 NTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp T-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred CCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 689999999 899998888765 5544
No 31
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=72.36 E-value=12 Score=35.17 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCeEEEEEEecccCC--CccEEEEEcCCCC
Q 048276 286 IDHGVTAIGYGASSD--GTKYWLVKNSWGT 313 (345)
Q Consensus 286 ~~Hav~iVGyg~~~~--g~~ywivkNSWG~ 313 (345)
.+||..|++.... + |.....+||-||.
T Consensus 235 ~~HaY~Vl~~~~~-~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREV-QEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEE-ccCceEEEEecCCccC
Confidence 5999999999875 4 7788999999994
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.25 E-value=2.6 Score=32.33 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHHHHHHHhhcCC
Q 048276 17 VMYFWAIHALCRP 29 (345)
Q Consensus 17 ~~~~~~~~~~~~~ 29 (345)
+|||+++.+.++.
T Consensus 15 ~lLlisSevaa~~ 27 (95)
T PF07172_consen 15 ALLLISSEVAARE 27 (95)
T ss_pred HHHHHHhhhhhHH
Confidence 3455555444443
No 33
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=57.93 E-value=13 Score=25.68 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048276 9 YFCLVSLLVMYFWAIHA 25 (345)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (345)
=+++++|||++++++..
T Consensus 4 Kl~vialLC~aLva~vQ 20 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQ 20 (65)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 45677888888877543
No 34
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=55.53 E-value=39 Score=26.89 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=28.9
Q ss_pred HHHHHh-CCCeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEecccCCCccEEEEEcCC
Q 048276 249 LMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSW 311 (345)
Q Consensus 249 i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 311 (345)
+++.+. ..||.+.+... . -....+|.|+|+||+.+ +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~----------~-----~~~~~gH~vVv~g~~~~----~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG----------V-----SITPSGHAMVVIGYDRK----GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC----------c-----ccCCCCeEEEEEEEcCC----CCEEEECCC
Confidence 667777 56998887641 0 12346899999999821 235566765
No 35
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=52.13 E-value=35 Score=28.73 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=27.9
Q ss_pred hHHHHHHHHh-CCCeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEeccc
Q 048276 245 NEQALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGAS 298 (345)
Q Consensus 245 ~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~ 298 (345)
..+.+...|. +||+-+++... .+....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P----------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP----------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC----------------CCcceeeEEEEEeecCC
Confidence 4677888887 89999986543 12234799999998865
No 36
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=43.62 E-value=31 Score=32.51 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCeEEEEEEecccCCCcc--EEEEEcCCC
Q 048276 286 IDHGVTAIGYGASSDGTK--YWLVKNSWG 312 (345)
Q Consensus 286 ~~Hav~iVGyg~~~~g~~--ywivkNSWG 312 (345)
.+||-.|++...- ++.+ -..+||-||
T Consensus 227 ~~HaYsVl~v~~~-~~~~~~Ll~lrNPWg 254 (318)
T smart00230 227 KGHAYSVTDVREV-QGRRQELLRLRNPWG 254 (318)
T ss_pred cCccEEEEEEEEE-ecCCeEEEEEECCCC
Confidence 5899999998765 4445 889999998
No 37
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=38.75 E-value=1.1e+02 Score=28.90 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=13.2
Q ss_pred CCCCCccccCCCCcchHHHHHHH
Q 048276 132 NGAVTPVKDQGDCNCCWAFSSVA 154 (345)
Q Consensus 132 ~g~vtpV~dQg~cgsCwAfA~~~ 154 (345)
.|--||..|-|. -=|-.+|..+
T Consensus 97 yGhstP~T~~GK-~Fcm~Yal~G 118 (350)
T KOG4404|consen 97 YGHSTPSTDGGK-AFCMFYALVG 118 (350)
T ss_pred cCCCCCCCcCce-ehhhhHHHhc
Confidence 355677777765 2456666553
No 38
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=36.74 E-value=22 Score=25.08 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcC
Q 048276 5 NICQYFCLVSLLVMYFWAIHALCR 28 (345)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (345)
+-+-+..|++|+++-++|+++.+.
T Consensus 2 nn~Si~VLlaLvLIg~fAVqSdag 25 (71)
T PF04202_consen 2 NNLSIAVLLALVLIGSFAVQSDAG 25 (71)
T ss_pred CchhHHHHHHHHHHhhheeeecCc
Confidence 334455566666677777765543
No 39
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=36.28 E-value=1.6e+02 Score=25.42 Aligned_cols=49 Identities=31% Similarity=0.641 Sum_probs=29.5
Q ss_pred HHHHHHHh-CCCeEEEEecCCccccccccCeecCCCCCCCCCeEEEEEEecccCCCccEEEEEcCCCCCCC--CCceEE
Q 048276 247 QALMQVVA-DQPVSVSIDSSGYMFQFYSSGIIKSEECGTDIDHGVTAIGYGASSDGTKYWLVKNSWGTGWG--EGGYVR 322 (345)
Q Consensus 247 ~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Gi~~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG--~~GY~~ 322 (345)
+.|+..|. ..||.+.-... ..+||.+|=||..+ .||-+ -|| || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~-------------------~~GHawViDGy~~~----~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK-------------------SGGHAWVIDGYDSD----GYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET-------------------TEEEEEEEEEEESS----SEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC-------------------CCCeEEEEcCccCC----CeEEE--eeC--ccCCCCCccC
Confidence 55777776 67987654322 01999999999653 46654 375 65 469985
No 40
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=30.87 E-value=1.5e+02 Score=20.88 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=5.5
Q ss_pred HHHHHHHHhC
Q 048276 39 MHEQWMAQHG 48 (345)
Q Consensus 39 ~f~~~~~~~~ 48 (345)
+|.+|++..+
T Consensus 37 L~~~~v~~~g 46 (66)
T PF07438_consen 37 LFDQFVRDNG 46 (66)
T ss_pred HHHHHhhccC
Confidence 3666666433
No 41
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=30.46 E-value=42 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.052 Sum_probs=9.4
Q ss_pred CCcchhhHHHHHHHHHHHHHH
Q 048276 1 MAFTNICQYFCLVSLLVMYFW 21 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (345)
|+| |+.++-++++-|+++++
T Consensus 1 MaR-RlwiLslLAVtLtVALA 20 (100)
T PF05984_consen 1 MAR-RLWILSLLAVTLTVALA 20 (100)
T ss_pred Cch-hhHHHHHHHHHHHHHhh
Confidence 666 44444444444444444
No 42
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=29.98 E-value=1.6e+02 Score=20.12 Aligned_cols=14 Identities=0% Similarity=0.000 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 048276 34 LIMLKMHEQWMAQH 47 (345)
Q Consensus 34 ~~~~~~f~~~~~~~ 47 (345)
.........+...+
T Consensus 44 ~k~~~~~~s~~~~f 57 (58)
T PF13677_consen 44 EKFEEVAQSFQQAF 57 (58)
T ss_pred HHHHHHHHHHHHhc
Confidence 34445555554443
No 43
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=29.10 E-value=1.7e+02 Score=23.61 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=10.8
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 048276 3 FTNICQYFCLVSLLVMYFWAI 23 (345)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (345)
|+.+..++.++++.+|+..+.
T Consensus 3 FTLiEllivlaIigil~~i~~ 23 (134)
T TIGR01710 3 FTLLEIMVVLVILGLLAALVA 23 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 455666555555444444333
No 44
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=28.80 E-value=46 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.506 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHHH
Q 048276 5 NICQYFCLVSLLVMYFW 21 (345)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (345)
-+++.+.+++||+|+|-
T Consensus 29 tILivLVIIiLlImlfq 45 (85)
T PF10717_consen 29 TILIVLVIIILLIMLFQ 45 (85)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444444
No 45
>PRK14762 membrane protein; Provisional
Probab=26.20 E-value=1e+02 Score=17.29 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHHH
Q 048276 4 TNICQYFCLVSLLV 17 (345)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (345)
|++..+.+++.+++
T Consensus 1 mki~lw~i~iifli 14 (27)
T PRK14762 1 MKIILWAVLIIFLI 14 (27)
T ss_pred CeeHHHHHHHHHHH
Confidence 45666777777777
No 46
>PF15588 Imm7: Immunity protein 7
Probab=24.63 E-value=2.4e+02 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=25.1
Q ss_pred EEEEEEecccC-CCccEEEEEcCC-----CCCCCCCceEEEEe
Q 048276 289 GVTAIGYGASS-DGTKYWLVKNSW-----GTGWGEGGYVRIQR 325 (345)
Q Consensus 289 av~iVGyg~~~-~g~~ywivkNSW-----G~~WG~~GY~~i~~ 325 (345)
-|+.||+++++ +-+.|-|++.+- -..=|.+||. +..
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~-~e~ 58 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY-TEC 58 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE-EEE
Confidence 38999999875 345699999964 3344567886 444
No 47
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=20.42 E-value=78 Score=17.09 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=8.9
Q ss_pred CCCHHHHHhHhc
Q 048276 80 DLTNDEFRSMYA 91 (345)
Q Consensus 80 Dlt~eE~~~~~~ 91 (345)
-++.++|+++++
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 367788888765
Done!