BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048279
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 12/150 (8%)
Query: 35 LSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNR 94
++++ LQA DGHW GDYGGP+FL+PGL+IT + L +++E+ RY+ + Q
Sbjct: 81 MTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREEIVRYLRSVQLP 137
Query: 95 DGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATAL 154
DGGWGLHIE ST+FG+ LNYV+LR+LG G +D + R R+ + + GGA A+
Sbjct: 138 DGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD--------PDLVRARNILHKKGGAVAI 189
Query: 155 TSWGKMWLSVLYLEHLNGLATIPFPLRYGF 184
SWGK WL+VL + GL T+ FP + F
Sbjct: 190 PSWGKFWLAVLNVYSWEGLNTL-FPEMWLF 218
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 27 VTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSE----EHKK 82
+ TL + L + Q DG W G +G + G L + +
Sbjct: 556 IRETLTQGLEFCRRQQRADGSWEGSWG--VCFTYGTWFGLEAFACMGQTYRDGTACAEVS 613
Query: 83 EMCRYVYNHQNRDGGWGLHIEG 104
C ++ + Q DGGWG E
Sbjct: 614 RACDFLLSRQMADGGWGEDFES 635
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 12/150 (8%)
Query: 35 LSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNR 94
++++ LQA DGHW GDYGGP+FL+PGL+IT + L +++E+ RY+ + Q
Sbjct: 81 MTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREEIVRYLRSVQLP 137
Query: 95 DGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATAL 154
DGGWGLHIE ST+FG+ LNYV+LR+LG G +D + R R+ + + GGA A+
Sbjct: 138 DGGWGLHIEDKSTVFGTALNYVSLRILGVGPDD--------PDLVRARNILHKKGGAVAI 189
Query: 155 TSWGKMWLSVLYLEHLNGLATIPFPLRYGF 184
SWGK WL+VL + GL T+ FP + F
Sbjct: 190 PSWGKFWLAVLNVYSWEGLNTL-FPEMWLF 218
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 27 VTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSE----EHKK 82
+ TL + L + Q DG W G +G + G L + +
Sbjct: 556 IRETLTQGLEFCRRQQRADGSWEGSWG--VCFTYGTWFGLEAFACMGQTYRDGTACAEVS 613
Query: 83 EMCRYVYNHQNRDGGWGLHIEG 104
C ++ + Q DGGWG E
Sbjct: 614 RACDFLLSRQMADGGWGEDFES 635
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 28 TNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRY 87
TL RA+ Y + Q +G+W G + + V+ I ++ + +++ RY
Sbjct: 12 ARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RDRMEKIRRY 67
Query: 88 VYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147
+ + Q DG W L+ GP + ++ YV L+ +G ++ M++ +I
Sbjct: 68 LLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE--------EPMQKALRFIQS 119
Query: 148 HGGATALTSWGKMWLSVL 165
GG + + +MWL+++
Sbjct: 120 QGGIESSRVFTRMWLALV 137
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEM 84
D +RRA+ Y Q DG W G +G G V+ S A+ E + ++
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVV--SALKAVGIDTREPYIQKA 519
Query: 85 CRYVYNHQNRDGGWG 99
+V HQN DGGWG
Sbjct: 520 LDWVEQHQNPDGGWG 534
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 28 TNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRY 87
TL RA+ Y + Q +G+W G + + V+ I ++ + +++ RY
Sbjct: 12 ARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RDRMEKIRRY 67
Query: 88 VYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147
+ + Q DG W L+ GP + ++ YV L+ +G ++ M++ +I
Sbjct: 68 LLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE--------EPMQKALRFIQS 119
Query: 148 HGGATALTSWGKMWLSVL 165
GG + + +MWL+++
Sbjct: 120 QGGIESSRVFTRMWLALV 137
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEM 84
D +RRA+ Y Q DG W G +G G V+ S A+ E + ++
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVV--SALKAVGIDTREPYIQKA 519
Query: 85 CRYVYNHQNRDGGWG 99
+V HQN DGGWG
Sbjct: 520 LDWVEQHQNPDGGWG 534
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 28 TNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRY 87
TL RA+ Y + Q +G+W G + + V+ I ++ + +++ RY
Sbjct: 12 ARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RDRMEKIRRY 67
Query: 88 VYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147
+ + Q DG W L+ GP + ++ YV L+ +G ++ M++ +I
Sbjct: 68 LLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDE--------EPMQKALRFIQS 119
Query: 148 HGGATALTSWGKMWLSVL 165
GG + + +MWL+++
Sbjct: 120 QGGIESSRVFTRMWLALV 137
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAV---LSEEHK 81
D +RRA+ Y Q DG W G +G G V++ AL AV E +
Sbjct: 462 DDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVS-----ALKAVGIDTREPYI 516
Query: 82 KEMCRYVYNHQNRDGGWG 99
++ +V HQN DGGWG
Sbjct: 517 QKALDWVEQHQNPDGGWG 534
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 31 LRRALSYHSTLQAHDGHWPGDYGGPMFLMPGL--VITLSITGALNAVLSEEHKKEMCRYV 88
+ + ++Y +LQ DG + GD G + V TL++ G L+A+ + ++ +V
Sbjct: 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI----NVEKAIEFV 171
Query: 89 YNHQNRDGGWG 99
+ N DGG+G
Sbjct: 172 LSCMNFDGGFG 182
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 31 LRRALSYHSTLQAHDGHWPGDYGGPMFLMPGL--VITLSITGALNAVLSEEHKKEMCRYV 88
+ + ++Y +LQ DG + GD G + V TL++ G L+A+ + ++ +V
Sbjct: 115 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI----NVEKAIEFV 170
Query: 89 YNHQNRDGGWG 99
+ N DGG+G
Sbjct: 171 LSCMNFDGGFG 181
>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLN 114
+ TL AL+ + H+ MC +++ + GGWG+ G FG ++
Sbjct: 175 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDIS 226
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 141 GRSWILEHGGATALTSWGKMWLSVLYLEHLNG 172
GR+W GG++ L +G + L ++L HL+G
Sbjct: 159 GRNWPWASGGSSILAEFGTLHLEFMHLSHLSG 190
>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|C Chain C, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|F Chain F, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3DW8|C Chain C, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|F Chain F, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3K7V|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 309
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGS 111
+ TL AL+ + H+ MC +++ + GGWG+ G FG
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQ 222
>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
Length = 309
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLN 114
+ TL AL+ + H+ MC +++ + GGWG+ G FG ++
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDIS 225
>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction
Length = 309
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGS 111
+ TL AL+ + H+ MC +++ + GGWG+ G FG
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQ 222
>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|F Chain F, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 309
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGS 111
+ TL AL+ + H+ MC +++ + GGWG+ G FG
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQ 222
>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 304
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGS 111
+ TL AL+ + H+ MC +++ + GGWG+ G FG
Sbjct: 174 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQ 222
>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 293
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 63 VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGS 111
+ TL AL+ + H+ MC +++ + GGWG+ G FG
Sbjct: 173 IDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQ 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,859,455
Number of Sequences: 62578
Number of extensions: 303068
Number of successful extensions: 606
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 39
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)