Query 048279
Match_columns 202
No_of_seqs 165 out of 1291
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 1.4E-60 2.9E-65 456.4 18.1 195 1-200 69-263 (759)
2 PLN02993 lupeol synthase 100.0 2.3E-60 5E-65 455.4 18.0 193 1-201 69-264 (763)
3 TIGR01507 hopene_cyclase squal 100.0 4.5E-51 9.8E-56 388.2 15.9 165 24-200 11-175 (635)
4 cd02892 SQCY_1 Squalene cyclas 100.0 5.8E-51 1.3E-55 387.8 14.1 159 31-200 1-159 (634)
5 TIGR03463 osq_cycl 2,3-oxidosq 100.0 4E-49 8.7E-54 375.0 13.9 154 36-200 2-156 (634)
6 TIGR01787 squalene_cyclas squa 100.0 6.9E-49 1.5E-53 372.7 14.4 159 30-200 1-159 (621)
7 KOG0497 Oxidosqualene-lanoster 100.0 1.1E-47 2.4E-52 358.3 9.8 195 2-201 70-264 (760)
8 PF13243 Prenyltrans_1: Prenyl 99.8 2.7E-21 5.8E-26 144.2 1.2 105 31-148 1-105 (109)
9 PLN03012 Camelliol C synthase 99.8 4E-19 8.6E-24 171.3 12.7 116 26-150 587-715 (759)
10 PLN02993 lupeol synthase 99.8 1.9E-18 4.1E-23 166.9 13.1 117 25-150 586-715 (763)
11 TIGR03463 osq_cycl 2,3-oxidosq 99.7 4E-17 8.6E-22 156.1 11.9 116 24-151 472-598 (634)
12 TIGR01507 hopene_cyclase squal 99.7 9.8E-17 2.1E-21 153.4 11.6 111 28-150 470-591 (635)
13 PF13249 Prenyltrans_2: Prenyl 99.7 1.2E-16 2.5E-21 119.2 6.4 101 35-149 1-105 (113)
14 TIGR01787 squalene_cyclas squa 99.6 1.5E-15 3.3E-20 145.0 12.1 114 26-150 457-581 (621)
15 KOG0497 Oxidosqualene-lanoster 99.6 6.2E-15 1.4E-19 139.2 9.6 116 24-149 584-713 (760)
16 cd02892 SQCY_1 Squalene cyclas 99.6 1.8E-14 3.9E-19 137.9 11.7 114 26-150 473-597 (634)
17 cd02897 A2M_2 Proteins similar 99.4 3.4E-12 7.4E-17 110.9 14.3 125 25-159 45-182 (292)
18 cd02889 SQCY Squalene cyclase 99.4 1.2E-12 2.5E-17 115.4 10.4 114 31-149 1-130 (348)
19 cd02889 SQCY Squalene cyclase 99.4 2.1E-12 4.5E-17 113.8 11.5 113 26-150 188-311 (348)
20 cd00688 ISOPREN_C2_like This g 99.4 4.1E-12 9E-17 106.3 11.7 118 25-151 48-175 (300)
21 cd02890 PTase Protein prenyltr 99.4 9E-12 1.9E-16 107.8 13.0 127 31-170 100-242 (286)
22 COG1657 SqhC Squalene cyclase 99.4 2.4E-13 5.2E-18 126.3 2.7 74 118-200 1-74 (517)
23 cd02894 GGTase-II Geranylgeran 99.3 2.3E-11 5E-16 106.0 13.0 134 26-172 97-245 (287)
24 cd02891 A2M_like Proteins simi 99.3 5.7E-11 1.2E-15 101.6 13.3 129 24-163 44-184 (282)
25 cd02896 complement_C3_C4_C5 Pr 99.3 6.4E-11 1.4E-15 103.7 11.9 123 24-149 47-183 (297)
26 cd00688 ISOPREN_C2_like This g 99.2 1.2E-10 2.6E-15 97.4 10.9 108 28-149 103-219 (300)
27 PLN03201 RAB geranylgeranyl tr 99.1 1.4E-09 3E-14 96.4 13.4 127 31-170 106-247 (316)
28 cd02890 PTase Protein prenyltr 99.1 9.5E-10 2E-14 95.2 10.9 131 28-169 46-192 (286)
29 cd02895 GGTase-I Geranylgerany 99.1 9.7E-10 2.1E-14 97.0 10.5 130 31-170 114-263 (307)
30 PF00432 Prenyltrans: Prenyltr 99.0 8.6E-10 1.9E-14 70.3 4.6 42 81-122 3-44 (44)
31 PF13249 Prenyltrans_2: Prenyl 99.0 5.9E-10 1.3E-14 82.8 4.2 64 34-100 47-113 (113)
32 cd02893 FTase Protein farnesyl 99.0 1.1E-08 2.3E-13 90.0 12.5 125 32-169 101-241 (299)
33 cd02893 FTase Protein farnesyl 98.9 2.5E-08 5.4E-13 87.7 13.4 131 30-170 48-193 (299)
34 cd02894 GGTase-II Geranylgeran 98.9 1.4E-08 3.1E-13 88.5 10.7 104 31-147 150-255 (287)
35 cd02897 A2M_2 Proteins similar 98.9 2.2E-08 4.8E-13 87.0 11.2 110 28-149 101-270 (292)
36 PLN02710 farnesyltranstransfer 98.8 4.9E-08 1.1E-12 90.0 12.7 127 31-170 145-286 (439)
37 PLN03201 RAB geranylgeranyl tr 98.8 2.8E-08 6E-13 88.1 10.7 126 31-169 58-198 (316)
38 cd02895 GGTase-I Geranylgerany 98.8 4.5E-08 9.8E-13 86.4 11.5 127 31-167 167-304 (307)
39 PF13243 Prenyltrans_1: Prenyl 98.8 1.4E-09 3.1E-14 80.7 1.3 61 81-151 1-61 (109)
40 COG5029 CAL1 Prenyltransferase 98.7 4.5E-08 9.8E-13 86.0 8.9 104 33-149 130-236 (342)
41 KOG0366 Protein geranylgeranyl 98.7 1.6E-07 3.4E-12 81.0 10.5 126 32-170 117-257 (329)
42 PLN02710 farnesyltranstransfer 98.6 3.4E-07 7.4E-12 84.5 12.0 129 31-169 94-237 (439)
43 COG1657 SqhC Squalene cyclase 98.6 3.6E-08 7.8E-13 92.1 3.8 110 29-149 352-472 (517)
44 cd02896 complement_C3_C4_C5 Pr 98.5 8.1E-07 1.7E-11 77.8 9.6 97 27-149 168-275 (297)
45 PF07678 A2M_comp: A-macroglob 98.4 4.4E-07 9.6E-12 77.5 6.6 112 34-148 2-125 (246)
46 TIGR02474 pec_lyase pectate ly 98.3 4.6E-06 9.9E-11 73.2 10.0 120 25-149 63-219 (290)
47 KOG0367 Protein geranylgeranyl 98.3 2.9E-06 6.3E-11 74.3 8.5 108 34-149 130-241 (347)
48 cd02891 A2M_like Proteins simi 98.1 5.3E-06 1.1E-10 70.9 5.7 65 79-149 49-114 (282)
49 KOG0365 Beta subunit of farnes 97.9 9E-05 2E-09 66.3 9.3 118 28-155 119-242 (423)
50 TIGR02474 pec_lyase pectate ly 97.8 9.9E-05 2.1E-09 64.9 8.2 75 75-149 63-150 (290)
51 KOG0366 Protein geranylgeranyl 97.5 0.00037 8E-09 60.5 7.8 104 31-147 68-173 (329)
52 KOG0367 Protein geranylgeranyl 97.3 0.0029 6.2E-08 55.9 10.9 134 32-180 177-331 (347)
53 KOG0365 Beta subunit of farnes 97.3 0.0021 4.5E-08 57.8 10.2 112 26-150 166-281 (423)
54 PLN02592 ent-copalyl diphospha 97.3 0.00036 7.8E-09 68.9 5.3 60 80-149 116-177 (800)
55 PF09492 Pec_lyase: Pectic aci 97.1 0.0013 2.8E-08 58.0 6.6 120 25-148 58-213 (289)
56 PF00432 Prenyltrans: Prenyltr 97.0 0.0016 3.5E-08 41.1 4.9 40 31-70 3-44 (44)
57 PF07678 A2M_comp: A-macroglob 97.0 0.0015 3.2E-08 55.8 6.1 85 28-122 48-146 (246)
58 COG5029 CAL1 Prenyltransferase 96.9 0.0068 1.5E-07 53.9 9.4 135 32-178 177-324 (342)
59 PLN02279 ent-kaur-16-ene synth 96.8 0.0016 3.6E-08 64.3 4.8 59 80-148 74-136 (784)
60 PF01122 Cobalamin_bind: Eukar 95.9 0.045 9.6E-07 49.1 8.3 74 80-166 216-292 (326)
61 COG1689 Uncharacterized protei 95.0 0.088 1.9E-06 44.9 6.8 84 80-173 7-91 (274)
62 PF09492 Pec_lyase: Pectic aci 93.9 0.12 2.6E-06 45.6 5.5 73 78-150 61-146 (289)
63 COG1689 Uncharacterized protei 93.9 0.12 2.7E-06 44.0 5.2 61 55-121 208-271 (274)
64 PLN02592 ent-copalyl diphospha 93.7 0.12 2.6E-06 51.5 5.5 54 33-91 119-176 (800)
65 PF01122 Cobalamin_bind: Eukar 93.0 0.36 7.8E-06 43.3 7.0 67 24-99 210-278 (326)
66 PLN02279 ent-kaur-16-ene synth 90.6 0.42 9.1E-06 47.7 5.1 53 33-90 77-135 (784)
67 TIGR01577 oligosac_amyl oligos 87.3 4.7 0.0001 38.9 9.8 114 26-149 253-393 (616)
68 PF07470 Glyco_hydro_88: Glyco 83.8 1.7 3.7E-05 38.3 4.5 118 26-148 145-287 (336)
69 TIGR01577 oligosac_amyl oligos 81.6 6.6 0.00014 37.9 8.0 91 29-121 314-426 (616)
70 PF07470 Glyco_hydro_88: Glyco 81.0 5 0.00011 35.4 6.4 74 24-97 210-294 (336)
71 TIGR01535 glucan_glucosid gluc 76.5 22 0.00047 35.0 9.7 112 26-149 248-386 (648)
72 TIGR01535 glucan_glucosid gluc 76.1 29 0.00062 34.1 10.4 91 29-121 314-415 (648)
73 KOG1366 Alpha-macroglobulin [P 75.1 7.3 0.00016 41.6 6.4 77 24-101 966-1046(1436)
74 COG2373 Large extracellular al 73.0 7.5 0.00016 42.0 6.0 61 78-144 1198-1260(1621)
75 COG4225 Predicted unsaturated 65.6 37 0.00079 30.9 7.9 73 23-96 226-308 (357)
76 PF05592 Bac_rhamnosid: Bacter 64.8 20 0.00043 33.4 6.5 92 28-121 168-287 (509)
77 KOG1366 Alpha-macroglobulin [P 57.3 26 0.00056 37.6 6.3 91 50-149 936-1037(1436)
78 PF10022 DUF2264: Uncharacteri 55.9 59 0.0013 29.6 7.7 119 19-149 169-304 (361)
79 cd04794 euk_LANCL eukaryotic L 49.9 61 0.0013 28.5 6.7 27 25-51 184-210 (343)
80 PF09282 Mago-bind: Mago bindi 49.7 2.6 5.7E-05 24.1 -1.3 13 87-99 4-16 (27)
81 PRK13621 psbV cytochrome c-550 47.7 55 0.0012 26.8 5.5 59 27-100 105-163 (170)
82 COG2373 Large extracellular al 47.2 67 0.0015 35.0 7.5 74 21-94 1191-1268(1621)
83 TIGR03046 PS_II_psbV2 photosys 46.5 56 0.0012 26.3 5.3 59 27-100 94-152 (155)
84 PF07221 GlcNAc_2-epim: N-acyl 45.1 78 0.0017 27.8 6.6 77 25-101 39-127 (346)
85 PF07944 DUF1680: Putative gly 42.9 96 0.0021 29.4 7.2 26 25-50 79-104 (520)
86 COG4225 Predicted unsaturated 40.6 77 0.0017 28.9 5.8 116 24-148 154-303 (357)
87 COG3538 Uncharacterized conser 38.7 3E+02 0.0065 25.5 9.2 128 26-163 261-409 (434)
88 PF07944 DUF1680: Putative gly 35.9 74 0.0016 30.1 5.3 23 79-101 83-105 (520)
89 KOG3960 Myogenic helix-loop-he 30.3 23 0.0005 30.9 0.8 23 6-42 147-169 (284)
90 PLN03005 beta-fructofuranosida 29.4 1.3E+02 0.0029 28.9 5.7 42 57-105 453-494 (550)
91 PF12899 Glyco_hydro_100: Alka 29.2 1.6E+02 0.0035 27.6 6.1 40 58-104 366-405 (436)
92 PRK13739 conjugal transfer pro 28.7 1E+02 0.0023 25.6 4.3 41 114-174 41-81 (198)
93 PF09954 DUF2188: Uncharacteri 28.4 40 0.00087 22.3 1.6 40 93-151 6-45 (62)
94 PLN02703 beta-fructofuranosida 26.2 1.8E+02 0.0038 28.5 5.9 42 57-105 506-547 (618)
95 PLN02973 beta-fructofuranosida 25.6 1.9E+02 0.004 28.1 5.9 42 57-105 474-515 (571)
96 KOG3760 Heparan sulfate-glucur 24.2 73 0.0016 29.9 2.9 33 19-51 370-402 (594)
97 cd04794 euk_LANCL eukaryotic L 23.0 5.1E+02 0.011 22.6 8.1 24 78-101 187-210 (343)
98 PF08124 Lyase_8_N: Polysaccha 22.6 1.1E+02 0.0024 27.2 3.7 63 24-93 82-150 (324)
99 PF07221 GlcNAc_2-epim: N-acyl 22.4 1.3E+02 0.0029 26.3 4.2 66 78-148 42-115 (346)
100 PF08769 Spo0A_C: Sporulation 20.8 1.4E+02 0.0031 22.2 3.4 31 15-45 45-75 (106)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.4e-60 Score=456.42 Aligned_cols=195 Identities=44% Similarity=0.821 Sum_probs=188.4
Q ss_pred CCCcCCCCCCCCcccccCCCCCChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHH
Q 048279 1 FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEH 80 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~ 80 (202)
|+|||+|++++|+||++++++||.+.+.++++||++|+.++|.+||||++++++++|+++++|+++|++|..|+.+++++
T Consensus 69 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~~ 148 (759)
T PLN03012 69 FLKEKKFEQRIAPAKVEDAEKITFEIATNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQDH 148 (759)
T ss_pred HHhccCcccCCCcccCCCCcccchHHHHHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHH
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKM 160 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~ 160 (202)
.+++++||+++||+|||||+|++|+|+|++|++||+|||++|+++++|.++ +|+|||+||+++||++++|+||||
T Consensus 149 ~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~-----~m~rAR~~Il~~GGa~~~p~w~K~ 223 (759)
T PLN03012 149 RKEILRYIYCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDN-----ACGRARDWILDHGGATYIPSWGKT 223 (759)
T ss_pred HHHHHHHHHHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcH-----HHHHHHHHHHHcCCcccCchHHHH
Confidence 999999999999999999999999999999999999999999998854223 999999999999999999999999
Q ss_pred HHHhccCccCCCCCCCCCchhcccCccccCcccchhhhcc
Q 048279 161 WLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCI 200 (202)
Q Consensus 161 ~Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~s~~~~~ 200 (202)
|||++|+|||+++|+|||||||||.|+||||+|++||+|.
T Consensus 224 wLA~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~ 263 (759)
T PLN03012 224 WLSILGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRL 263 (759)
T ss_pred HHHHcCccccCCCCCCChhHHHccCcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=2.3e-60 Score=455.45 Aligned_cols=193 Identities=47% Similarity=0.833 Sum_probs=188.4
Q ss_pred CCCcCCCCCCCCcccccCCCCCChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHH
Q 048279 1 FAKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEH 80 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~ 80 (202)
++|||++++++|+||++++++||.+.+.++++||++|+.++|.+||||++++++++|+++++|+++|++|.+|+.++++.
T Consensus 69 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~ra~~~l~~lQ~~DGhW~~e~~g~~fl~~~~Vi~~~~~g~~~~~~~~~~ 148 (763)
T PLN02993 69 FLKEAKFEQVIPPVKIDRGEEITYETATNALRRGVSFFSALQASDGHWPGEITGPLFFLPPLVFCLYITGHLEEVFDAEH 148 (763)
T ss_pred HHhccCcccCCCcccCCCCccccHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhHHHHHHHHHhcCCCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCC---CCCCCCCchhHHHHHHHHHHHcCCCcchhhH
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGAN---DGRGANDGRGAMERGRSWILEHGGATALTSW 157 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~---~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~ 157 (202)
.+++++||+++||+|||||+|++|+|+|++|++||+|||++|++++ +| +|+|||+||+++||++++|+|
T Consensus 149 ~~ei~ryl~~~Q~~DGGWgl~~eg~s~~~~Tv~~Y~aLRllG~~~d~~~~p--------~m~rAR~~Il~~GGa~~~~~w 220 (763)
T PLN02993 149 RKEMLRHIYCHQNEDGGWGLHIESKSVMFCTVLNYICLRMLGEGPNGGREN--------ACKRARQWILDHGGVTYIPSW 220 (763)
T ss_pred HHHHHHHHHHhccCCCCcccccCCCccchHHHHHHHHHHHcCCCCCCCCCH--------HHHHHHHHHHHcCCcccCchH
Confidence 9999999999999999999999999999999999999999999999 76 999999999999999999999
Q ss_pred HHHHHHhccCccCCCCCCCCCchhcccCccccCcccchhhhccc
Q 048279 158 GKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIF 201 (202)
Q Consensus 158 ~k~~Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~s~~~~~~ 201 (202)
||||||++|+|||+++|+|||||||||.|+||||+|++||+|.-
T Consensus 221 tK~wLAllG~y~W~g~~p~PpElwLLP~~~P~hp~~~~~~~R~v 264 (763)
T PLN02993 221 GKFWLSILGIYDWSGTNPMPPEIWLLPSFLPIHLGKTLCYTRMV 264 (763)
T ss_pred HHHHHHHcCCcccCCCCCCChhHHHccCcCCccHHHhHHhhhhh
Confidence 99999999999999999999999999999999999999999963
No 3
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=4.5e-51 Score=388.23 Aligned_cols=165 Identities=19% Similarity=0.367 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIE 103 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~ 103 (202)
.+.+.++|+++.+||+++|++||||++++++++|+++++|+++|++|.. . ++.++++++||+++||+|||||+|++
T Consensus 11 ~~~~~~a~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~g~~---~-~~~~~~~~~~l~~~Q~~DGgWg~~~~ 86 (635)
T TIGR01507 11 TARTVEAIDRAVDYLLSCQKDEGYWWGELESNVTIEAEYVLLCHILDRV---D-RDRMEKIRNYLLHEQREDGTWALYPG 86 (635)
T ss_pred cHHHHHHHHHHHHHHHHhccCCCccccccCCcchhcHHHHHHHHHHCCC---c-HHHHHHHHHHHHHhccCCCCccCccC
Confidence 3568999999999999999999999999999999999999999999973 2 67889999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcc
Q 048279 104 GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYG 183 (202)
Q Consensus 104 g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~ll 183 (202)
++|++++|++||+|||++|+++++| +|+|||+||+++||++++|+|||||||++|+|||+++|+|||||+||
T Consensus 87 ~~~~~~~Tv~~Y~aLrl~G~~~~~~--------~m~rAr~~I~~~GG~~~~~~~tk~~LAl~G~~~W~~~~~~P~El~ll 158 (635)
T TIGR01507 87 GPGDLSTTVEAYVALKYIGMSRDEP--------PMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWRGVPMVPPEIMLL 158 (635)
T ss_pred CCcchhHHHHHHHHHHHhCCCCCcH--------HHHHHHHHHHHcCCcccccHHHHHHHHHcCCcCcccCCCCCHHHHhC
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred cCccccCcccchhhhcc
Q 048279 184 FFLIFYHSIQVSAHLCI 200 (202)
Q Consensus 184 P~~~p~~~~~~s~~~~~ 200 (202)
|.|+||||+++|||+|.
T Consensus 159 P~~~p~~~~~~~~~~R~ 175 (635)
T TIGR01507 159 PKRFPFNIYEFSSWARA 175 (635)
T ss_pred CCcCCccHHHHHHHHHH
Confidence 99999999999999996
No 4
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=5.8e-51 Score=387.80 Aligned_cols=159 Identities=47% Similarity=0.878 Sum_probs=154.4
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFG 110 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~ 110 (202)
|+||++||+++|++||||++|+++++|+++++|+++|++|. .++++.++++++||+++||+|||||+|++++|++++
T Consensus 1 ~~~~~~~l~~~q~~dG~W~~e~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~q~~dGgw~~~~~~~~~~~~ 77 (634)
T cd02892 1 IRRALEFLLSLQAPDGHWPGELEGPLFITAEYILLLYILGI---PIDPEHRKEIARYLRNHQNPDGGWGLHHEGPSTMFG 77 (634)
T ss_pred ChHHHHHHHHhccCCCceecccCCcchhhHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHH
Confidence 47999999999999999999999999999999999999997 446888999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcccCccccC
Q 048279 111 SVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYH 190 (202)
Q Consensus 111 T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~llP~~~p~~ 190 (202)
|++||+|||++|+++++| +|+|||+||+++||++++|+|||||||++|+|||+++|+|||||||||+|+|||
T Consensus 78 T~~~Y~aLrl~G~~~~~~--------~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~ 149 (634)
T cd02892 78 TVLNYVALRLLGVSPDDP--------HMVKARNWILSHGGAARIPVWGKIWLALLGVYPWEGVPPLPPELWLLPSWLPFH 149 (634)
T ss_pred HHHHHHHHHHcCCCCCCH--------HHHHHHHHHHHcCCcccccHHHHHHHHHcCccccccCCCCCHhHHhcCCcCCcc
Confidence 999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcc
Q 048279 191 SIQVSAHLCI 200 (202)
Q Consensus 191 ~~~~s~~~~~ 200 (202)
|+++|||+|.
T Consensus 150 ~~~~~~~~R~ 159 (634)
T cd02892 150 PYKFWCWART 159 (634)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 5
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=4e-49 Score=374.97 Aligned_cols=154 Identities=32% Similarity=0.558 Sum_probs=148.9
Q ss_pred HHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccchHHHH
Q 048279 36 SYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNY 115 (202)
Q Consensus 36 ~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay 115 (202)
.+|+++|++||||++|+++++|+++++|+++|++|. ..+++.++++++||+++||+|||||+|++++|++++|++||
T Consensus 2 ~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~dGgWgl~~~~~~~~~~T~~~Y 78 (634)
T TIGR03463 2 ARLTETQQPAGCWEGEMIWCPVVTAQVAITRHVVGR---PPEPEQRAGIIRHFENSQLADGAWGLHPEAPGQVFTTVLNY 78 (634)
T ss_pred hhHHhcccCCCccccccCCccccCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHHHHHHH
Confidence 589999999999999999999999999999999996 45577888999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc-CCCcchhhHHHHHHHhccCccCCCCCCCCCchhcccCccccCcccc
Q 048279 116 VTLRLLGEGANDGRGANDGRGAMERGRSWILEH-GGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQV 194 (202)
Q Consensus 116 ~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~-GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~ 194 (202)
+|||++|+++++| +|+|||+||+++ ||++++|+|||+|||++|+|||+++|+|||||||||+||||||+|+
T Consensus 79 ~aLrl~G~~~~~~--------~~~rAr~~i~~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~El~lLP~~~P~~~~~~ 150 (634)
T TIGR03463 79 VALRLLGVGKEDA--------GLARARQWLHAQPGGVLGSPTWGKFWLALLGLYGRGGLQPVPPELWLLPESLPFHPSRF 150 (634)
T ss_pred HHHHHcCCCCCCH--------HHHHHHHHHHhCCCCcccCchHHHHHHHHcCcCCcccCCCCCHHHHHccccCCcCHHHH
Confidence 9999999999998 999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q 048279 195 SAHLCI 200 (202)
Q Consensus 195 s~~~~~ 200 (202)
|||+|.
T Consensus 151 ~~~~R~ 156 (634)
T TIGR03463 151 YCHTRM 156 (634)
T ss_pred HHHhHH
Confidence 999996
No 6
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=6.9e-49 Score=372.70 Aligned_cols=159 Identities=38% Similarity=0.654 Sum_probs=153.2
Q ss_pred HHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCccc
Q 048279 30 TLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMF 109 (202)
Q Consensus 30 ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~ 109 (202)
+|++|.+||+++|++||||++++++++|+++++|+++|++|.. . ++.++++++||+++||+|||||+|++++|+++
T Consensus 1 ~~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~a~~i~~~~~~g~~---~-~~~~~~~~~~l~~~Q~~DGgW~~~~~~~~~~~ 76 (621)
T TIGR01787 1 TARRAVEFLLSLQAPDGYWWGELEGPLTLLAEYVLLCHIADTP---L-PGYREKIVRYLRHHQNEDGGWGLHIGGKSTVF 76 (621)
T ss_pred CHHHHHHHHHHhccCCCceecccCCccccCHHHHHHHHHhcCC---C-hHHHHHHHHHHHHhcCCCCCeeCCcCCCcchH
Confidence 4799999999999999999999999999999999999999973 3 37889999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcccCcccc
Q 048279 110 GSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFY 189 (202)
Q Consensus 110 ~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~llP~~~p~ 189 (202)
+|++||+|||++|+++++| +|+|||+||+++||++++|+|||||||++|+|||+++|+|||||||||+|+||
T Consensus 77 ~Tv~aY~aLrl~G~~~~~~--------~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~ 148 (621)
T TIGR01787 77 GTVLAYVALKILGMSPDDP--------AMVRARNFILKQGGAVASPVFTKFWLALLGVYPWEGVPPLPPEIMLLPKWLPI 148 (621)
T ss_pred HHHHHHHHHHHcCCCCCcH--------HHHHHHHHHHHcCCcccCchHHHHHHHHcCccccccCCCCCHhHHhcCcccCc
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred Ccccchhhhcc
Q 048279 190 HSIQVSAHLCI 200 (202)
Q Consensus 190 ~~~~~s~~~~~ 200 (202)
|+.+++||+|+
T Consensus 149 ~~~~~w~~~~~ 159 (621)
T TIGR01787 149 HPSKSWCRCRM 159 (621)
T ss_pred Ccchhhhhhhh
Confidence 99999999986
No 7
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=358.30 Aligned_cols=195 Identities=49% Similarity=0.893 Sum_probs=188.0
Q ss_pred CCcCCCCCCCCcccccCCCCCChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHH
Q 048279 2 AKENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHK 81 (202)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~ 81 (202)
.+|+.|.+.+|+||++|+++++.+...++++|++.|+..+|.+||||++++++|+|.++.+|++++++|++...++.+++
T Consensus 70 ~~E~~~~q~~p~v~~~d~e~i~~e~~~~~lrrgi~f~~~LQa~DGhwp~~~~GPlf~~~~~v~~~yitg~l~~~~~~ehr 149 (760)
T KOG0497|consen 70 LREKKFEQVIPRVKIEDAEEITYEDATTALRRGLLFFSALQAPDGHWPGEYSGPLFFLPPLVICLYITGHLEKIFTAEHR 149 (760)
T ss_pred hhhhhhhhcCCCccccccceeehhhhhhhhhhhHHHHHHhcCCCCCCCCCCCCChhhhhhhhheeeecccCCcccCcccH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHH
Q 048279 82 KEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMW 161 (202)
Q Consensus 82 ~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~ 161 (202)
.++++|+++|||+|||||+|.+++|++++|+.+|+.||++|++++++. ..+|+|||+||++|||+.++|.|+|+|
T Consensus 150 ~Eliry~ynhqn~DGGWGlhve~~S~mF~TvlNYi~LRilG~~~~~~~-----~~a~~~aR~wild~GGa~~~p~wgK~w 224 (760)
T KOG0497|consen 150 KEILRYIYNHQNEDGGWGLHVEGKSTMFCTVLNYICLRILGEGPDHGD-----ESACKRARKWILDHGGATYIPSWGKFW 224 (760)
T ss_pred HHHHHHHHhccCCCCCccccccCceeEEEeeehheeheeeccCCCCCc-----hhHHHHHHHHHHHcCCccccchhhHHH
Confidence 999999999999999999999999999999999999999999998863 238999999999999999999999999
Q ss_pred HHhccCccCCCCCCCCCchhcccCccccCcccchhhhccc
Q 048279 162 LSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAHLCIF 201 (202)
Q Consensus 162 Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~s~~~~~~ 201 (202)
|+++|+|+|++++++|||+||||.++|+|+.++.+|.|..
T Consensus 225 LsvLgvydWsG~np~pPElwllP~~~P~h~g~~w~~~R~v 264 (760)
T KOG0497|consen 225 LSVLGVYDWSGVNPLPPELWLLPSFLPIHPGTLWCHCRDV 264 (760)
T ss_pred HHhcccccCcCCCCCCchhhccccccCCCCCceEEEecce
Confidence 9999999999999999999999999999999999999964
No 8
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.81 E-value=2.7e-21 Score=144.24 Aligned_cols=105 Identities=32% Similarity=0.620 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFG 110 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~ 110 (202)
|+++++||++.|++||+|.+.++.+++.|..++.++...+. ....+.++++++||+++|++||||+.. +..+.+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~---~~~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~ 75 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGD---AAVDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSM 75 (109)
T ss_dssp ----------------------------------------T---S-SSBSSHHHHHHHHH---TTS--S-T--S--HHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccCC---CCcHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHH
Confidence 68999999999999999999988888888888888887774 233467899999999999999999976 4556778
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 111 SVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 111 T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
|+.++.+|.+.+..++++ .++||++||+++
T Consensus 76 t~~~~~~l~~~~~~~~~~--------~~~r~~~wi~~~ 105 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDDE--------AVERGLEWILSH 105 (109)
T ss_dssp HHHHHHHHHHHHTT--HH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHc
Confidence 899999998888877776 999999999998
No 9
>PLN03012 Camelliol C synthase
Probab=99.80 E-value=4e-19 Score=171.33 Aligned_cols=116 Identities=19% Similarity=0.290 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccCCCCCccc-cHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc--
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFL-MPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI-- 102 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~-ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~-- 102 (202)
+++.+|+||++||++.|++||+|.|.|+.++.+ |...+.+|...|... .+.+.++|+++||+++||+|||||+..
T Consensus 587 ~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~--~~~~~Irrav~fLls~Q~~DGGWGEs~~S 664 (759)
T PLN03012 587 EINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTF--NDCEAIRKGVHFLLAAQKDNGGWGESYLS 664 (759)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccC--CCcHHHHHHHHHHHHhcCCCCCcCCCCCC
Confidence 468899999999999999999999999887654 445566787778621 234789999999999999999999843
Q ss_pred ----------CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 103 ----------EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 103 ----------~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
++.|++++|++|++||..+|....+| .+++||++||++++-
T Consensus 665 c~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~-------~~i~Rg~~~Ll~~Q~ 715 (759)
T PLN03012 665 CPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDP-------IPLHRAAKLIINSQL 715 (759)
T ss_pred CCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCc-------HHHHHHHHHHHHccc
Confidence 24699999999999999999765553 279999999999754
No 10
>PLN02993 lupeol synthase
Probab=99.78 E-value=1.9e-18 Score=166.88 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCCCCCcc-ccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc-
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMF-LMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI- 102 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~- 102 (202)
++++++|+||++||++.|++||+|.|.|+.+++ .|...+.+|...|... -+.+.++|+++||+++||+|||||+..
T Consensus 586 ~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~--~~~~~IrrAv~fLls~Q~~DGGWGEs~~ 663 (763)
T PLN02993 586 KEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTY--NDCLAMRKGVHFLLTIQRDDGGWGESYL 663 (763)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHhcCCCCCcCcCcC
Confidence 456889999999999999999999999987754 3555666787778632 234789999999999999999999732
Q ss_pred -----------CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 103 -----------EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 103 -----------~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
++.|++++|++|++||..+|.+..++ ++++||++||++++-
T Consensus 664 S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~-------~~l~Rgi~~L~~~Q~ 715 (763)
T PLN02993 664 SCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDL-------IPLHRAAKLIITSQL 715 (763)
T ss_pred cCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCc-------HHHHHHHHHHHhccC
Confidence 24699999999999999999754443 289999999998754
No 11
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.72 E-value=4e-17 Score=156.10 Aligned_cols=116 Identities=23% Similarity=0.387 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCcc-ccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc-
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMF-LMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH- 101 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~- 101 (202)
.+++.++|+||++||++.|++||+|.+.|+.+.+ .|+..+.+|...|. ..+++.++++++||+++||+||||+..
T Consensus 472 ~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~---~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~ 548 (634)
T TIGR03463 472 DGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGA---SPDDMALQRAAAWLRSYQRADGGWGEVY 548 (634)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCC---CcCcHHHHHHHHHHHHccCCCCCccCcc
Confidence 3567889999999999999999999998875543 56667778888775 233578999999999999999999862
Q ss_pred ---------cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCC
Q 048279 102 ---------IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 102 ---------~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~ 151 (202)
..+.|++++|++|++||..+|.. +.+ .++||++||++++-.
T Consensus 549 ~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~-~~~--------~i~rgi~~L~~~Q~~ 598 (634)
T TIGR03463 549 ESCLQARYVEGKQSQAVMTSWALLALAEAGEG-GHD--------AVQRGVAWLRSRQQE 598 (634)
T ss_pred CccccccccCCCCCcHHHHHHHHHHHHHcCCc-CCH--------HHHHHHHHHHHhCCC
Confidence 23468999999999999999864 333 899999999987543
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.70 E-value=9.8e-17 Score=153.40 Aligned_cols=111 Identities=26% Similarity=0.411 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCCCCcc-ccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc-----
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYGGPMF-LMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH----- 101 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~----- 101 (202)
+.+|+||++||++.|++||+|.+.|+.+.+ .|...+.+|...|. ....+.++++++||+++||+|||||+.
T Consensus 470 ~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~---~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~ 546 (635)
T TIGR01507 470 WPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGI---DTREPYIQKALAWLESHQNPDGGWGEDCRSYE 546 (635)
T ss_pred hHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHhcCCCCCCCCCCcccc
Confidence 679999999999999999999998876543 34555667777775 234578999999999999999999953
Q ss_pred -----cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 102 -----IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 102 -----~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
..+.|++++|++|++||+.+|... ++ .++||.+||.++.-
T Consensus 547 ~~~~~g~g~s~~s~TA~AL~AL~~ag~~~-~~--------~I~rav~~L~~~Q~ 591 (635)
T TIGR01507 547 DPAYAGKGASTASQTAWALIALIAAGRAE-SE--------AARRGVQYLVETQR 591 (635)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHhCCCC-cH--------HHHHHHHHHHHhcC
Confidence 124789999999999999998653 33 89999999998853
No 13
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.66 E-value=1.2e-16 Score=119.18 Aligned_cols=101 Identities=23% Similarity=0.492 Sum_probs=80.8
Q ss_pred HHHHHhccCCCCCcccC-CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHH--HHHHHhhccCCCCccccc-CCCCcccc
Q 048279 35 LSYHSTLQAHDGHWPGD-YGGPMFLMPGLVITLSITGALNAVLSEEHKKEM--CRYVYNHQNRDGGWGLHI-EGPSTMFG 110 (202)
Q Consensus 35 ~~~L~~~Q~~DG~W~g~-~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~--~~~L~~~Q~~DGgWg~~~-~g~s~v~~ 110 (202)
++||++.|++||+|... ..+++..|+..+.+|+.+|.. ..++++ ++||.++|++||||+..+ +.+++++.
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~------~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~ 74 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEE------PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT 74 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSH------HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCc------ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence 58999999999999984 455666788888889988862 225566 999999999999999987 45788999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 111 SVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 111 T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
|..++.+|.++|.+.+.+ .++||++||++++
T Consensus 75 t~~~l~~l~~~~~~~~~~--------~~~~a~~~l~~~Q 105 (113)
T PF13249_consen 75 TYVALAALELLGRPDDEE--------AVRKAVDWLLSCQ 105 (113)
T ss_dssp HHHHHHHHHHHT-GGCHT--------THCCHHHHHHHTB
T ss_pred HHHHHHHHHHcCCCcccH--------HHHHHHHHHHHhc
Confidence 999999999999876644 7999999999975
No 14
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.64 E-value=1.5e-15 Score=144.96 Aligned_cols=114 Identities=29% Similarity=0.440 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccCCCCCcc-ccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc--
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGDYGGPMF-LMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI-- 102 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~-- 102 (202)
.+.++|+||++||.+.|++||+|.+.|+.+++ .|...+.+|..+|... .+.+.++++++||+++||+|||||...
T Consensus 457 ~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~--~~~~~i~rA~~~L~~~Q~~DGGWge~~~s 534 (621)
T TIGR01787 457 EIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTY--RNCPEVQKACDWLLSRQMPDGGWGEDCFS 534 (621)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcc--cCCHHHHHHHHHHHhhcCCCCCCCcCCcc
Confidence 46689999999999999999999998876643 3555556777777521 122779999999999999999999632
Q ss_pred --------CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 103 --------EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 103 --------~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
.+.|++++|++|+.||+.+|..... +++||++||.++.-
T Consensus 535 ~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~~~~---------ai~rgv~~L~~~Q~ 581 (621)
T TIGR01787 535 YEDPSYVGSGGSTPSQTGWALMALIAAGEADSE---------AIERGVKYLLETQR 581 (621)
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHcCccchH---------HHHHHHHHHHHhCC
Confidence 2478999999999999999864322 89999999998754
No 15
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.58 E-value=6.2e-15 Score=139.23 Aligned_cols=116 Identities=21% Similarity=0.426 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHH--HHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVI--TLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~--~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
+++++.+|.+|++|+.+.|.+||||+|.|+.+.+ .+++.. ++...|. +..+.+.++++|+||++.|++|||||.+
T Consensus 584 ~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFt-Y~t~Fa~~gl~aaGk--ty~nc~~irka~~Fll~~Q~~~GGWgEs 660 (760)
T KOG0497|consen 584 KKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFT-YGTWFALRGLAAAGK--TYENCEAIRKACDFLLSKQNPDGGWGES 660 (760)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHH-HHHHHhcchhhhcch--hhhccHHHHHHHHHHHhhhcccCCCccc
Confidence 3579999999999999999999999999987744 444432 5666675 2344678999999999999999999986
Q ss_pred cC------------CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 102 IE------------GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 102 ~~------------g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
+. ..|++.+|++|+++|...|....+| - .+.||.+.|.+.|
T Consensus 661 ~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~--~-----P~hr~ak~linsQ 713 (760)
T KOG0497|consen 661 YLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDP--L-----PLHRAAKVLINSQ 713 (760)
T ss_pred cccCccccccccccccccchhHHHHHHHHHhcCCccccc--c-----hHHHHHHHHHhcc
Confidence 43 2578999999999999999877775 2 6999999999876
No 16
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.56 E-value=1.8e-14 Score=137.87 Aligned_cols=114 Identities=27% Similarity=0.427 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccCCCCCcc-ccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc--
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGDYGGPMF-LMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI-- 102 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~-- 102 (202)
+++++++||++||.+.|++||+|.+.++.+.. .|+..+.+|..+|.. ....+.++++++||+++|++||||+...
T Consensus 473 ~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~--~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s 550 (634)
T cd02892 473 EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGED--YENSPYIRKACDFLLSKQNPDGGWGESYLS 550 (634)
T ss_pred HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCc--ccCcHHHHHHHHHHHhcCCCCCCCCCcccc
Confidence 56789999999999999999999998865533 344455677777752 1234678999999999999999999631
Q ss_pred --------CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 103 --------EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 103 --------~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
.+.+++++|++|+.+|...|.. +++ .++|+.+||.+++-
T Consensus 551 ~~~~~~~~~~~s~~~~TA~AllaLl~~g~~-~~~--------~i~r~i~wL~~~Q~ 597 (634)
T cd02892 551 YEDKSYAGGGRSTVVQTAWALLALMAAGEP-DSE--------AVERGIKYLLNTQL 597 (634)
T ss_pred ccCcccCCCCCCcHHHHHHHHHHHHHcCCC-ChH--------HHHHHHHHHHHcCC
Confidence 2568899999999999999874 443 89999999998753
No 17
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.43 E-value=3.4e-12 Score=110.94 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccc--CC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPG--DY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL 100 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~ 100 (202)
++..+-|+.+...+.+.|++||+|.. .. .++..+|+..+.+|..... ...+++..++++++||.++|++||||+.
T Consensus 45 ~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~-~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 45 SKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARP-FIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 34555688888889999999999942 11 4567788888877766653 2356788999999999999999999996
Q ss_pred cc---------CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHH
Q 048279 101 HI---------EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGK 159 (202)
Q Consensus 101 ~~---------~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k 159 (202)
+. ..++++..|+.+++||...|.+.+++ .++||++||.++-.- ..+.|++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~--------~i~~a~~yL~~~~~~-~~~~y~~ 182 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERP--------VVEKALSCLEAALDS-ISDPYTL 182 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccH--------HHHHHHHHHHHhccc-CCCHHHH
Confidence 31 12466789999999999999876665 899999999987431 1345555
No 18
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.41 E-value=1.2e-12 Score=115.39 Aligned_cols=114 Identities=26% Similarity=0.436 Sum_probs=88.4
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhc--------------cCCC
Q 048279 31 LRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQ--------------NRDG 96 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q--------------~~DG 96 (202)
|+++++||.++|++||+|.... +++..|+..+.+|+..|.. ....+.++|+++||.++| ++||
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~-~~~~~Ta~~~~al~~~g~~--~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY-SQVWDTALALQALLEAGLA--PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred CchHHHHHHHhccCCCCccccC-CchHHHHHHHHHHHHcCCC--CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 5789999999999999999877 7878888888888888752 223578999999999999 7999
Q ss_pred CcccccC--CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 97 GWGLHIE--GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 97 gWg~~~~--g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
||+.... +..+++.|+.++.+|..++...... .....+.+.++.+||+++.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~--~~~~~~~i~~a~~~L~~~Q 130 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDG--KKVSRERLYDAVDWLLSMQ 130 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCccc--chhhHHHHHHHHHHHHHhc
Confidence 9996432 2356789999999998887543110 0112348999999999973
No 19
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.40 E-value=2.1e-12 Score=113.83 Aligned_cols=113 Identities=27% Similarity=0.452 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccCCCCC-ccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc---
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGDYGGP-MFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH--- 101 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~-~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~--- 101 (202)
++..+++++++||.+.|++||+|.+.+..+ .+.++..+.+|+..|.. ...+.++++++||.++|++||||+..
T Consensus 188 ~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~---~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~ 264 (348)
T cd02889 188 EIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGED---ENSPYVRKACDWLLSKQNPDGGWGESYES 264 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCC---cCcHHHHHHHHHHHHccCCCCCcCCcccc
Confidence 466799999999999999999998766433 33455556677777752 33567899999999999999999852
Q ss_pred -------cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 102 -------IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 102 -------~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
....+++..|+.++.+|...|.. +++ .++|+.+||.++.-
T Consensus 265 ~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~-~~~--------~v~~a~~wL~~~Q~ 311 (348)
T cd02889 265 YEDPSYAGGGRSTVVQTAWALLALMAAGEP-DSE--------AVKRGVKYLLNTQQ 311 (348)
T ss_pred cccccccCCCCCcHHHHHHHHHHHHhcCCC-CHH--------HHHHHHHHHHHhcC
Confidence 23467899999999999998875 444 89999999998643
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.39 E-value=4.1e-12 Score=106.31 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCC---CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDY---GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~---~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
......++++++||.+.|++||+|.... ..++..|+..+.++..++... ..+.+.++++++||.++|++||||...
T Consensus 48 ~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~q~~dG~~~~~ 126 (300)
T cd00688 48 DKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-AVDRIDLARALNWLLSLQNEDGGFRED 126 (300)
T ss_pred ccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-ccCHHHHHHHHHHHHHccCCCCCeeee
Confidence 4577899999999999999999998754 346778888888888777532 345678999999999999999999976
Q ss_pred cCC-------CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCC
Q 048279 102 IEG-------PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 102 ~~g-------~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~ 151 (202)
... .+++..|+.++.+|..+|...+++ .+.|+++||.++.-.
T Consensus 127 ~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~--------~~~~~~~~l~~~q~~ 175 (300)
T cd00688 127 GPGNHRIGGDESDVRLTAYALIALALLGKLDPDP--------LIEKALDYLLSCQNY 175 (300)
T ss_pred cCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcH--------HHHHHHHHHHHHhcC
Confidence 543 678999999999999998755443 799999999998643
No 21
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.37 E-value=9e-12 Score=107.80 Aligned_cols=127 Identities=26% Similarity=0.299 Sum_probs=98.0
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
.+++++|+.+.|++||+|.+.. +.++..+-..+.+++.+|... ++.++++++||.++|++||||+..+++++++
T Consensus 100 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~----~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~ 175 (286)
T cd02890 100 REKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT----DIDKEKLIDYILSCQNYDGGFGGVPGAESHG 175 (286)
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch----hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCc
Confidence 4679999999999999998754 234444555667788888632 4578999999999999999999998889999
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC-----CCcchh---------hHHHHHHHhccCccC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG-----GATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G-----G~~~~~---------~~~k~~Lal~G~~~W 170 (202)
..|.+|..+|+++|... .+ .+.+.++||.++. |..+.+ .|.=--|++++..+|
T Consensus 176 ~~t~~av~sL~~l~~~~-~~--------~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~ 242 (286)
T cd02890 176 GYTFCAVASLALLGRLD-LI--------DKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHL 242 (286)
T ss_pred cHhHHHHHHHHHcCCCc-cc--------CHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccc
Confidence 99999999999999753 22 5899999999873 443333 334455666676655
No 22
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.36 E-value=2.4e-13 Score=126.35 Aligned_cols=74 Identities=30% Similarity=0.241 Sum_probs=71.3
Q ss_pred HHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcccCccccCcccchhh
Q 048279 118 LRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYGFFLIFYHSIQVSAH 197 (202)
Q Consensus 118 L~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~llP~~~p~~~~~~s~~ 197 (202)
|+.+|++.++| +|.+|+.+|+.+||+.+.+.|||++||++|+|.|. ++++|++.|+||.-+|+|++++|||
T Consensus 1 ~~~~g~~~~~p--------~~~~a~~~~~~~gg~~~~~~~~k~~la~~~~y~w~-~~~~p~~~~~lp~~~p~~~~~~~~~ 71 (517)
T COG1657 1 LRPLGVPATDP--------ALLKARSFILWRGGISKSRIWTKCRLAVLGAYIWR-APSAPPWVMLLPNTLPVHFYQMSSW 71 (517)
T ss_pred CCcccCCcccH--------HHhccHhhhhhcCCccccchHHHHHHHHhcceeec-cCCCCchHhhCCCcccchHHHHHHH
Confidence 46788889998 99999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hcc
Q 048279 198 LCI 200 (202)
Q Consensus 198 ~~~ 200 (202)
+|+
T Consensus 72 ~r~ 74 (517)
T COG1657 72 ARS 74 (517)
T ss_pred hhh
Confidence 996
No 23
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.32 E-value=2.3e-11 Score=105.98 Aligned_cols=134 Identities=21% Similarity=0.230 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccCCC--CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGDYG--GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIE 103 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~--~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~ 103 (202)
.+++..+++++|+.+.|++||+|.+... +++-.|-..+.++++++..+ ...++++++||.++|++||||+..++
T Consensus 97 ~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~----~i~~~~~~~~l~~~q~~dGGF~~~~~ 172 (287)
T cd02894 97 KIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLD----LIDVDKAVDYLLSCYNFDGGFGCRPG 172 (287)
T ss_pred hccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcc----hhhHHHHHHHHHHcCCCCCCcCCCCC
Confidence 3555689999999999999999987532 33333444555667777532 34579999999999999999999998
Q ss_pred CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh---------hHHHHHHHhccCccC
Q 048279 104 GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 104 g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~---------~~~k~~Lal~G~~~W 170 (202)
++++.-.|..|..+|.++|..... ...+.++||.++ ||..+.+ .|.=--|+++|..+|
T Consensus 173 ~es~~~~t~cavasL~llg~~~~~---------~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~ 243 (287)
T cd02894 173 AESHAGQIFCCVGALAILGSLDLI---------DRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHW 243 (287)
T ss_pred CCCchhHHHHHHHHHHHcCccccc---------CHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccc
Confidence 999999999999999999865333 489999999986 4655332 344456677777666
Q ss_pred CC
Q 048279 171 NG 172 (202)
Q Consensus 171 ~~ 172 (202)
..
T Consensus 244 ~~ 245 (287)
T cd02894 244 IN 245 (287)
T ss_pred cC
Confidence 43
No 24
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.29 E-value=5.7e-11 Score=101.64 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCccc---CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPG---DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL 100 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g---~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~ 100 (202)
.+++...|++++++|.+.|++||+|.- ...++.++|+..+.+|..++... ..+++.++++++||.++|++||+|..
T Consensus 44 ~~~~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~-~v~~~~i~ra~~~L~~~q~~~g~~~~ 122 (282)
T cd02891 44 REKALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYI-DVDENVLARALGWLVPQQKEDGSFRE 122 (282)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhccCCCCCcCC
Confidence 568999999999999999999999953 22567788888777776655433 45678899999999999999999986
Q ss_pred ccC---------CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHH
Q 048279 101 HIE---------GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLS 163 (202)
Q Consensus 101 ~~~---------g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~La 163 (202)
... ..+.+..|+.++++|...|... .+ .+.++++||.++-.- ....+++..+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~-~~--------~~~~a~~~L~~~~~~-~~~~~~~a~la 184 (282)
T cd02891 123 LGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC-DA--------SIEKALAYLETQLDG-LLDPYALAILA 184 (282)
T ss_pred CCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc-hH--------HHHHHHHHHHHhccc-CCChHHHHHHH
Confidence 432 2355678999999998888643 32 799999999987431 23456664444
No 25
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.25 E-value=6.4e-11 Score=103.67 Aligned_cols=123 Identities=11% Similarity=0.139 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
.+++.+.|+++...+.+.|++||+|.. ...+++++|+..+-+|....... .++++.++++++||.++|++||+|...
T Consensus 47 ~~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~ 125 (297)
T cd02896 47 RDEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYI-PVDQNVICGSVNWLISNQKPDGSFQEP 125 (297)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCCeeCCC
Confidence 357888899999999999999999942 33567788888777776665432 567889999999999999999999974
Q ss_pred c--------CC----CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 102 I--------EG----PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 102 ~--------~g----~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
. ++ ++++..|+.++++|...|...... .......+.||++||.++-
T Consensus 126 ~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~--~~~~~~~i~rA~~yL~~~~ 183 (297)
T cd02896 126 SPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPE--VQNLDQSIRKAISYLENQL 183 (297)
T ss_pred CCccChhccCCccccCCCccchHHHHHHHHhhhcccccc--chhhHHHHHHHHHHHHHhc
Confidence 2 11 367889999999998887532100 0011238999999999974
No 26
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.21 E-value=1.2e-10 Score=97.44 Aligned_cols=108 Identities=27% Similarity=0.422 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCC---------CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCc
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYG---------GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGW 98 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~---------~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgW 98 (202)
...++++++||.++|++||+|..... .....++..+.+|..+|... ..+.++++++||.++|++||||
T Consensus 103 ~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~---~~~~~~~~~~~l~~~q~~~g~~ 179 (300)
T cd00688 103 RIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD---PDPLIEKALDYLLSCQNYDGGF 179 (300)
T ss_pred HHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC---CcHHHHHHHHHHHHHhcCCCCc
Confidence 45689999999999999999986532 34556677777887777522 1467899999999999999999
Q ss_pred ccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 99 GLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 99 g~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
.....++++.|+.+..||..+|.. ..+ .+.++++||+++.
T Consensus 180 --~~~~~~~~~~t~~~~~aL~~~~~~-~~~--------~~~~~~~~L~~~q 219 (300)
T cd00688 180 --GPGGESHGYGTACAAAALALLGDL-DSP--------DAKKALRWLLSRQ 219 (300)
T ss_pred --CCCccccHHHHHHHHHHHHHcCCc-chH--------HHHHHHHHHHHhc
Confidence 456678899999999999999865 222 7999999999874
No 27
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.11 E-value=1.4e-09 Score=96.42 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
.+++++|+.+.|++||+|.+.- +.++-.+-..+.++++++..+ ...++++++||.++|++||||+..++++++.
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~----~i~~~~~~~~i~scq~~dGGF~~~p~~esh~ 181 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD----KINVEKAVDYIVSCKNFDGGFGCTPGGESHA 181 (316)
T ss_pred HHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccc----hhHHHHHHHHHHHhcCCCCCcCCCCCCCCcc
Confidence 4569999999999999999843 233333344455677777532 3457899999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC----CCcchh---------hHHHHHHHhccCccC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG----GATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G----G~~~~~---------~~~k~~Lal~G~~~W 170 (202)
..|..|+.+|.++|..... ...+-++||.+++ |..+-+ .|.=--|+++|..+|
T Consensus 182 g~T~caiaaL~llg~~~~~---------d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~ 247 (316)
T PLN03201 182 GQIFCCVGALAITGSLHHV---------DKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHW 247 (316)
T ss_pred ceehHHHHHHHHcCccccC---------CHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccc
Confidence 9999999999999853222 2456789999874 555443 344455667776544
No 28
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.08 E-value=9.5e-10 Score=95.17 Aligned_cols=131 Identities=20% Similarity=0.200 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcc-CCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCC
Q 048279 28 TNTLRRALSYHSTLQ-AHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEG 104 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q-~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g 104 (202)
...++++++|+++.| ++||.|.+.. .+++..|...+.++..+|.. ..+...++++++||.++|++||||+..+.+
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~ 123 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSRIDREKIYKFLSSLQNPDGSFRGDLGG 123 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccchhhHHHHHHHHHHhcCCCCCcccCCCC
Confidence 456799999999999 9999998853 34555666667778888752 123455788999999999999999988788
Q ss_pred CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh---------hHHHHHHHhccCcc
Q 048279 105 PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT---------SWGKMWLSVLYLEH 169 (202)
Q Consensus 105 ~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~---------~~~k~~Lal~G~~~ 169 (202)
++++..|-.|+.+|.++|... .. ...+.++||.+. ||-...+ .|+=.-|+++|..+
T Consensus 124 ~~d~~~ty~al~~l~ll~~~~-~~--------~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~ 192 (286)
T cd02890 124 EVDTRFVYCALSILSLLNILT-DI--------DKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLD 192 (286)
T ss_pred CchHHHHHHHHHHHHHhCCch-hh--------hHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCc
Confidence 899999999999999998754 22 689999999985 4544322 23334566677664
No 29
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.07 E-value=9.7e-10 Score=97.01 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCCCCCcccCC-----CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY-----GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGP 105 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~-----~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~ 105 (202)
.++.++|+.+.|++||+|.+.. +.++..+-..+..++++|..+. ....++++++||.++|+.|||++..+.++
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~--~~~d~~~li~~l~s~Q~~dGGF~~~~~~E 191 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE--EDIDKEKLIDYIKSSQSYDGGFGQGPGLE 191 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc--ccccHHHHHHHHHHccCCCCCccCCCCCC
Confidence 4678999999999999998765 5666666667778888886431 12347889999999999999999999999
Q ss_pred CcccchHHHHHHHHHcCCCCC--CCCCCCCchhHHHHHHHHHHHcC----CCcchh---------hHHHHHHHhccCccC
Q 048279 106 STMFGSVLNYVTLRLLGEGAN--DGRGANDGRGAMERGRSWILEHG----GATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 106 s~v~~T~~ay~AL~l~G~~~~--~p~~~~~~~~~l~ra~~wI~~~G----G~~~~~---------~~~k~~Lal~G~~~W 170 (202)
++.-.|-.|..+|.++|.... .. ...+.++||+++. |..+-+ .|.=-.|+++|..++
T Consensus 192 sh~g~Tyca~asL~lL~~~~~~~~~--------~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~ 263 (307)
T cd02895 192 SHGGSTFCAIASLSLLGKLEELSEK--------FLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQL 263 (307)
T ss_pred ccccHHHHHHHHHHHcCCccccccc--------cHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccc
Confidence 999999999999999986431 22 5799999999865 343332 344456666666543
No 30
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.97 E-value=8.6e-10 Score=70.30 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcC
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLG 122 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G 122 (202)
++++++||+++|++||||+..++.++++..|.+++.+|+++|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 688999999999999999999999999999999999999986
No 31
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.96 E-value=5.9e-10 Score=82.80 Aligned_cols=64 Identities=25% Similarity=0.489 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCCCcccCCC---CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 048279 34 ALSYHSTLQAHDGHWPGDYG---GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL 100 (202)
Q Consensus 34 a~~~L~~~Q~~DG~W~g~~~---~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~ 100 (202)
+++||.++|++||+|..... .++..+...+.++..++... ..+.++++++||+++|++||||+.
T Consensus 47 ~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~---~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 47 AVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD---DEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG---CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc---ccHHHHHHHHHHHHhcCCCCCCCc
Confidence 59999999999999998642 23445555666777777632 246789999999999999999983
No 32
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.96 E-value=1.1e-08 Score=90.03 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=94.4
Q ss_pred HHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCccc
Q 048279 32 RRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMF 109 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~ 109 (202)
++.++|+.+.|++||+|...- +.++-.+-..+..+++++.. +++.++++++||.++|+.|||++..++.+++.-
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~----~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~ 176 (299)
T cd02893 101 EALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL----TDELFEGVAEYILSCQTYEGGFGGVPGNEAHGG 176 (299)
T ss_pred HHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC----chhhHHHHHHHHHHcCCCCCCcCCCCCCCCCcc
Confidence 359999999999999999753 23433333445566777753 356789999999999999999999888889989
Q ss_pred chHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc-----CCCcchh---------hHHHHHHHhccCcc
Q 048279 110 GSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH-----GGATALT---------SWGKMWLSVLYLEH 169 (202)
Q Consensus 110 ~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~-----GG~~~~~---------~~~k~~Lal~G~~~ 169 (202)
.|..++.+|.++|.... . ...+.++||+++ ||..+-| .|.=--|++++.+.
T Consensus 177 yTfcavasL~llg~~~~-~--------d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~ 241 (299)
T cd02893 177 YTFCALAALAILGKPDK-L--------DLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAIL 241 (299)
T ss_pred HHHHHHHHHHHcCCccc-c--------CHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 99999999999985422 2 478999999976 4544333 55666667776653
No 33
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.92 E-value=2.5e-08 Score=87.73 Aligned_cols=131 Identities=17% Similarity=0.218 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCc
Q 048279 30 TLRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPST 107 (202)
Q Consensus 30 ai~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~ 107 (202)
-.++.++|+.+.|++||++.+.. .+++..|-..+..+.++|..+ ..+.-.++++++||.+.|++||||+..+.++++
T Consensus 48 ~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~-~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D 126 (299)
T cd02893 48 YADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEE-AYDVIDREALYKFLLSLKQPDGSFRMHVGGEVD 126 (299)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCch-hhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCch
Confidence 36889999999999999998864 345555555666777777521 123334677999999999999999999888999
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh---------hHHHHHHHhccCccC
Q 048279 108 MFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 108 v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~---------~~~k~~Lal~G~~~W 170 (202)
+-.|-.|...+.+++.-++. .+.+..+||.+. ||....+ .++=--|+++|..++
T Consensus 127 ~r~tycava~~~lL~~~~~~---------~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~ 193 (299)
T cd02893 127 VRGTYCAISVASLLNILTDE---------LFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDK 193 (299)
T ss_pred HhHHHHHHHHHHHhCCCchh---------hHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccc
Confidence 88888888888888854322 589999999976 5665443 233345677777653
No 34
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.89 E-value=1.4e-08 Score=88.50 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=84.7
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
++++++||.+.|++||.|.+.- ++..-.|...+.+|..+|..+ ...++++++||.++|++|||++..++.+.++
T Consensus 150 ~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~----~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~ 225 (287)
T cd02894 150 VDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD----LIDRDRLGWWLCERQLPSGGLNGRPEKLPDV 225 (287)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc----ccCHHHHHHHHHHhCCCCCCcCCCCCCCCch
Confidence 6899999999999999998753 334455666777889998743 2347889999999999999999888888999
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~ 147 (202)
.-|-+++.+|.++|...-. ...+.++||++
T Consensus 226 ~ysf~~~a~l~~l~~~~~~---------~~~~l~~~l~~ 255 (287)
T cd02894 226 CYSWWVLSSLKIIGRLHWI---------NKNKLKNFILA 255 (287)
T ss_pred hHhhHHHHHHHHhcccccc---------CHHHHHHHHHH
Confidence 9999999999999854211 36888899996
No 35
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.87 E-value=2.2e-08 Score=87.02 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcccC-----------CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh------
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGD-----------YGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN------ 90 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~-----------~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~------ 90 (202)
+.+|+||++||.++|++||+|... ....+..|+..+++|...|..+ .++.++++++||.+
T Consensus 101 ~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~---~~~~i~~a~~yL~~~~~~~~ 177 (292)
T cd02897 101 ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS---ERPVVEKALSCLEAALDSIS 177 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc---ccHHHHHHHHHHHHhcccCC
Confidence 469999999999999999999742 1123445666666665555311 12233333333333
Q ss_pred --------------------------------hccCCCCccccc----------C-CCCcccchHHHHHHHHHcCCCCCC
Q 048279 91 --------------------------------HQNRDGGWGLHI----------E-GPSTMFGSVLNYVTLRLLGEGAND 127 (202)
Q Consensus 91 --------------------------------~Q~~DGgWg~~~----------~-g~s~v~~T~~ay~AL~l~G~~~~~ 127 (202)
+++.+|+|+..+ . ..+++..|+++++||...+. ++.
T Consensus 178 ~~y~~al~a~AL~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~-~~~ 256 (292)
T cd02897 178 DPYTLALAAYALTLAGSEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGG-EDL 256 (292)
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCC-ccH
Confidence 345578887521 1 24689999999999988864 233
Q ss_pred CCCCCCchhHHHHHHHHHHHcC
Q 048279 128 GRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 128 p~~~~~~~~~l~ra~~wI~~~G 149 (202)
+ .+.++++||.++.
T Consensus 257 ~--------~~~~~v~WL~~~q 270 (292)
T cd02897 257 A--------EALPIVKWLAKQR 270 (292)
T ss_pred h--------HHHHHHHHHHHcC
Confidence 2 7899999999754
No 36
>PLN02710 farnesyltranstransferase subunit beta
Probab=98.83 E-value=4.9e-08 Score=90.00 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=98.3
Q ss_pred HHHHHHHHHhccCCCCCcccCCC--CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDYG--GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~~--~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
.++..+||.+.|++||++.+.-. .++-.+-..+..+++++.. +++.+++.++||.++|+.|||++..++.+++.
T Consensus 145 r~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l----~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~ 220 (439)
T PLN02710 145 REKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL----DDELVKGVGDYILSCQTYEGGIGGEPGAEAHG 220 (439)
T ss_pred HHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC----chhhHHHHHHHHHHhCCCCCCCCCCCCCCCch
Confidence 35789999999999999987543 3444455555667778753 35678899999999999999999999989998
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC----CCcchh---------hHHHHHHHhccCccC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG----GATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G----G~~~~~---------~~~k~~Lal~G~~~W 170 (202)
--|-.++.+|.++|....- -+.+.++||+++. |..+-+ .|.=-.|+++|...|
T Consensus 221 gyTfcavAsL~LLg~l~~i---------d~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~ 286 (439)
T PLN02710 221 GYTFCGLAAMILINEVDRL---------DLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVT 286 (439)
T ss_pred HHHHHHHHHHHHcCCcccc---------CHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhh
Confidence 8999999999999854222 3788999999875 444322 556677888887766
No 37
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.83 E-value=2.8e-08 Score=88.14 Aligned_cols=126 Identities=19% Similarity=0.161 Sum_probs=90.2
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
.++.++|+.+.|++||.|.+.. +..+..|-..+.++.+++.. +.-.++++++||.+.|++||||+...++++++
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~----~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~ 133 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRL----DLLDADKVASYVAGLQNEDGSFSGDEWGEIDT 133 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHhcCCCCCccCCCCCCccH
Confidence 4789999999999999998753 23334444455556666532 23346789999999999999999888888888
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh--------hH-HHHHHHhccCcc
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT--------SW-GKMWLSVLYLEH 169 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~--------~~-~k~~Lal~G~~~ 169 (202)
-.|..|..+|.+++.-.. . .++++.+||.+. ||....+ +| +=--|+++|..+
T Consensus 134 r~ty~a~a~l~LL~~~~~-i--------~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~ 198 (316)
T PLN03201 134 RFSYCALCCLSLLKRLDK-I--------NVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLH 198 (316)
T ss_pred HHHHHHHHHHHHhCccch-h--------HHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccc
Confidence 889999999999974222 2 579999999975 4555432 22 334567777443
No 38
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=98.81 E-value=4.5e-08 Score=86.43 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=94.9
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
.++.++||.+.|+.||.|...- ++..-.|-..+.+|.+++..+ ..+...++++++||.++|+.+||++..++..+++
T Consensus 167 ~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~-~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~ 245 (307)
T cd02895 167 KEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLE-ELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADT 245 (307)
T ss_pred HHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCcc-ccccccHHHHHHHHHHhcCCCCCcCCCCCCCCcc
Confidence 5789999999999999998643 334344555666788888743 1123557889999999999999999988888999
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH-----cCCCcchh----hHHHHHHHhccC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE-----HGGATALT----SWGKMWLSVLYL 167 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~-----~GG~~~~~----~~~k~~Lal~G~ 167 (202)
.-|-++..+|.++|....- -..+.++||++ .||....| ...-.++++.|+
T Consensus 246 cysfw~~a~L~iL~~~~~i---------d~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~L 304 (307)
T cd02895 246 CYSFWVGASLKLLDAFQLI---------DFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAAL 304 (307)
T ss_pred chhhHHHHHHHHcCccccc---------CHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHH
Confidence 9999999999999864322 36889999995 36766554 344455555543
No 39
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.80 E-value=1.4e-09 Score=80.71 Aligned_cols=61 Identities=28% Similarity=0.555 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCC
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~ 151 (202)
++++++||+++|++||||+... .++++.|+.++.+|+..|.....+ +|+||++||++++..
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~--------ai~ka~~~l~~~Q~~ 61 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDE--------AIKKAIDWLLSHQNP 61 (109)
T ss_dssp ------------------------------------------TS-SSB--------SSHHHHHHHHH---T
T ss_pred Cccccccccccccccccccccc--cccccccccccccccccCCCCcHH--------HHHHHHHHHHHhcCC
Confidence 4688999999999999998543 367899999999999998655554 899999999998543
No 40
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.5e-08 Score=86.03 Aligned_cols=104 Identities=25% Similarity=0.297 Sum_probs=81.4
Q ss_pred HHHHHHHhccCCCCCcccCCCCCccccHH--HHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccc
Q 048279 33 RALSYHSTLQAHDGHWPGDYGGPMFLMPG--LVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFG 110 (202)
Q Consensus 33 ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~--~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~ 110 (202)
+-.+|+...|+||||+.++..+.+-..-- .+..+.++|. ++.+..+.+++||.++||=|||+|..+..+++--.
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~----~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~ 205 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD----LDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGY 205 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh----cchhhhHHHHHHHHHhhccCCcccCCCchhhccch
Confidence 57899999999999999887654322221 1223456674 44677888999999999999999999999888889
Q ss_pred hHHHHHHHHHcC-CCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 111 SVLNYVTLRLLG-EGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 111 T~~ay~AL~l~G-~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
|--|+.+|++++ .++-+ .+++-..||.+++
T Consensus 206 tFcalaalalL~~Ld~ls---------~~E~l~~Wl~~RQ 236 (342)
T COG5029 206 TFCALAALALLGKLDKLS---------DVEKLIRWLAERQ 236 (342)
T ss_pred HHHHHHHHHHHhcccccc---------hHHHHHHHHHHcc
Confidence 999999999998 44433 3789999999874
No 41
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.6e-07 Score=81.02 Aligned_cols=126 Identities=22% Similarity=0.248 Sum_probs=93.1
Q ss_pred HHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCccc
Q 048279 32 RRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMF 109 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~ 109 (202)
++-..|+..+|++|||+.|+. +.++-+.-..+.+|+++|.++ ...++++++|+.++-|-|||+|..++.+|+.-
T Consensus 117 d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld----~~nve~aVd~~~~CyN~DGGFG~~pGaESHag 192 (329)
T KOG0366|consen 117 DKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLD----TINVEKAVDFVLSCYNFDGGFGCRPGAESHAG 192 (329)
T ss_pred HHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHH----HhhHHHHHHHHHhhcccCCCcCCCCCcccccc
Confidence 346899999999999999984 456667777888999999865 35688999999999999999999999888766
Q ss_pred chHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh---------hHHHHHHHhccCccC
Q 048279 110 GSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 110 ~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~---------~~~k~~Lal~G~~~W 170 (202)
+---+.-||+++|.=..-. -.+--.||..+ ||+.+-| -|.---|++.|-..|
T Consensus 193 qifcCvgaLai~~~L~~vd---------~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~w 257 (329)
T KOG0366|consen 193 QIFCCVGALAITGKLHLVD---------RDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHW 257 (329)
T ss_pred eehhhHHHHHHccchhhcC---------HHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhh
Confidence 6555777888888322211 13444677654 4554433 234455778888888
No 42
>PLN02710 farnesyltranstransferase subunit beta
Probab=98.64 E-value=3.4e-07 Score=84.48 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
-++.++||.+.|.+||++.+.- ...+..|-..+.+|.++|..+ .++.-.++++.+||.+.|++|||++.++++++++
T Consensus 94 ~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~-~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~ 172 (439)
T PLN02710 94 ENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGER-ALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDV 172 (439)
T ss_pred HHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCch-hhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCc
Confidence 3678999999999999998754 334444555566788888521 1222236788999999999999999999999988
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh---------hHHHHHHHhccCcc
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT---------SWGKMWLSVLYLEH 169 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~---------~~~k~~Lal~G~~~ 169 (202)
-.|-.|+..+.++|.-.+. ...+..+||++. ||..+.| .++=--|+++|..+
T Consensus 173 R~tYcAlail~LL~~l~~~---------~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~ 237 (439)
T PLN02710 173 RACYTAISVASLLNILDDE---------LVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVD 237 (439)
T ss_pred CCcHHHHHHHHHhCcCchh---------hHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCcc
Confidence 8888888888899853222 578999999985 4665544 22334466666544
No 43
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.58 E-value=3.6e-08 Score=92.14 Aligned_cols=110 Identities=23% Similarity=0.390 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhccCCCCCcccCCCCCccccH-HHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC----
Q 048279 29 NTLRRALSYHSTLQAHDGHWPGDYGGPMFLMP-GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIE---- 103 (202)
Q Consensus 29 ~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta-~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~---- 103 (202)
.-|++|++||+++|.+||+|.+.|..+.+..+ .+.-+++..|..+ ..+..+++++.++.++|++||||+.+..
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~--~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~ 429 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETD--ENEVLVRKLISWLVSKQMPDGGWGEAKEAISD 429 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccc--cchHHHHHHHHHhhhccccCCCcccccccccc
Confidence 44999999999999999999999876654433 3444677777522 2346899999999999999999998532
Q ss_pred ------CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 104 ------GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 104 ------g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
+.|.+..|.++..++....++..+ .++++.+.+.+..
T Consensus 430 ~~~~~t~~sl~~~~~wal~~~~~a~~~~~~---------~i~~~~~~~~~~~ 472 (517)
T COG1657 430 PVYTGTESSLLVQTNWALIALLTALEPNQE---------AIKPGINLLVSDQ 472 (517)
T ss_pred cccccccchhhcchhHHHHHHHHhcccchh---------hhcccccccccCc
Confidence 457788999999998887766222 5777777777654
No 44
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.49 E-value=8.1e-07 Score=77.83 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc----
Q 048279 27 VTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI---- 102 (202)
Q Consensus 27 v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~---- 102 (202)
...+|+||++||.++|.+ ..+.+..+....+|...|. +..+++.++|.+.|+.||||+.+.
T Consensus 168 ~~~~i~rA~~yL~~~~~~--------~~~~Y~~Al~ayALal~~~-------~~~~~a~~~L~~~~~~d~~~~~~~~~~~ 232 (297)
T cd02896 168 LDQSIRKAISYLENQLPN--------LQRPYALAITAYALALADS-------PLSHAANRKLLSLAKRDGNGWYWWTIDS 232 (297)
T ss_pred hHHHHHHHHHHHHHhccc--------CCChHHHHHHHHHHHHcCC-------hhhHHHHHHHHHHhhhCCCcceeccCcC
Confidence 456899999999999865 2233555555556666664 257889999999999999998632
Q ss_pred -----CCCC--cccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 103 -----EGPS--TMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 103 -----~g~s--~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
.+++ ++.+|++|++||...|. .. ...++++||.++.
T Consensus 233 ~~~~~~~~~~~~vE~TAYALLall~~~~---~~--------~a~~iv~WL~~qr 275 (297)
T cd02896 233 PYWPVPGPSAITVETTAYALLALLKLGD---IE--------YANPIARWLTEQR 275 (297)
T ss_pred ccCCCCCCchhhhHHHHHHHHHHHhcCC---ch--------hHHHHHHHHHhcC
Confidence 2223 79999999999988862 21 5789999999853
No 45
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.44 E-value=4.4e-07 Score=77.50 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=80.0
Q ss_pred HHHHHHhccCCCCCcccC---CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC-------
Q 048279 34 ALSYHSTLQAHDGHWPGD---YGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIE------- 103 (202)
Q Consensus 34 a~~~L~~~Q~~DG~W~g~---~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~------- 103 (202)
|..-+++-|++||+|..- ..+++.+|+..+-.+...... ..+++..+.++++||.++|++||+|.....
T Consensus 2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~ 80 (246)
T PF07678_consen 2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQ 80 (246)
T ss_dssp HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGS
T ss_pred chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccC
Confidence 445577889999999754 567888999888777666554 467889999999999999999999976311
Q ss_pred C--CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 104 G--PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 104 g--~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
+ .+++..|+..++||.-.+.-.+.. .......+.||.+||.++
T Consensus 81 g~~~~~~~lTA~VliAL~e~~~~~~~~--~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 81 GGVEDDIALTAYVLIALLEAGSLCDSE--KPEYENAINKALNYLERH 125 (246)
T ss_dssp GGGTHHHHHHHHHHHHHHHCHCCHTTT--HHCHHHHHHHHHHHHHHH
T ss_pred CCCCCCeeehHHHHHHHHhhhhhcccc--chhhHHHHHHHHHHHHHh
Confidence 1 246778899999998887221100 012345999999999988
No 46
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.31 E-value=4.6e-06 Score=73.23 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCCC--CC-----cccc---HHHHHHHHHh--CCCC-CCCC-------HHHHHHH
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYG--GP-----MFLM---PGLVITLSIT--GALN-AVLS-------EEHKKEM 84 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~--~~-----~~~t---a~~v~~l~~~--g~~~-~~~~-------~~~~~~~ 84 (202)
....+++.||++||++.|.++|.|+.-+. +. .|-+ ...+.+|..+ +..+ ...+ .+.++|+
T Consensus 63 ~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rg 142 (290)
T TIGR02474 63 AKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKG 142 (290)
T ss_pred hhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHH
Confidence 35789999999999999999999986432 11 1111 2222233221 1110 0111 2468899
Q ss_pred HHHHHhhccCCC----CcccccC-------------CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 048279 85 CRYVYNHQNRDG----GWGLHIE-------------GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147 (202)
Q Consensus 85 ~~~L~~~Q~~DG----gWg~~~~-------------g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~ 147 (202)
++||++.|.++| +||..++ -+|--+++....+ ..++..+..+ .++.+++..|++|+.+
T Consensus 143 id~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv-~~LM~~~~ps----~~i~~ai~~A~~W~~~ 217 (290)
T TIGR02474 143 IECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGIL-LFLMTQPNPS----AEIKEAIRAGVAWFDT 217 (290)
T ss_pred HHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHH-HHHhcCCCCC----HHHHHHHHHHHHHHHH
Confidence 999999998887 5665332 1332222222222 2223333222 3677799999999998
Q ss_pred cC
Q 048279 148 HG 149 (202)
Q Consensus 148 ~G 149 (202)
+-
T Consensus 218 ~~ 219 (290)
T TIGR02474 218 SR 219 (290)
T ss_pred CC
Confidence 84
No 47
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.9e-06 Score=74.34 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=77.3
Q ss_pred HHHHHHhccCCCCCcccCC---CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccc
Q 048279 34 ALSYHSTLQAHDGHWPGDY---GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFG 110 (202)
Q Consensus 34 a~~~L~~~Q~~DG~W~g~~---~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~ 110 (202)
.++++...|++|||+.... +++|-+--..+.-.|+++... .++ .+++..||++.|+=|||+|..++++++--+
T Consensus 130 il~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s-~iD---~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~ 205 (347)
T KOG0367|consen 130 ILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWS-GID---KEKLIGYIRSSQRYDGGFGQHPGGESHGGA 205 (347)
T ss_pred HHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcccc-ccC---HHHHHHHHHHhhccccccccCCCCCCCcch
Confidence 5678899999999998643 234333333333456776422 232 577899999999999999999999999999
Q ss_pred hHHHHHHHHHcCCC-CCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 111 SVLNYVTLRLLGEG-ANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 111 T~~ay~AL~l~G~~-~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
|--|+++|.++|.= ++.-.+. ..+.|-++|++.++
T Consensus 206 TfCAlAsL~L~~~l~~e~l~~~----~~~erlirWli~RQ 241 (347)
T KOG0367|consen 206 TFCALASLALMGKLIPEELSNT----SKVERLIRWLIQRQ 241 (347)
T ss_pred hHHHHHHHHHHhhhhhhhhccc----cCHHHHHHHHHHHh
Confidence 99999999999832 2211000 03899999998764
No 48
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.09 E-value=5.3e-06 Score=70.89 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCCCcccccCC-CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 79 EHKKEMCRYVYNHQNRDGGWGLHIEG-PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 79 ~~~~~~~~~L~~~Q~~DGgWg~~~~g-~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
+.+++++++|.+.|++||||+.+.+. .+++..|+.++.+|..++.....+ .+.+.||.+||.++.
T Consensus 49 ~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~------~~~i~ra~~~L~~~q 114 (282)
T cd02891 49 EYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVD------ENVLARALGWLVPQQ 114 (282)
T ss_pred HHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcc
Confidence 56888999999999999999998776 789999999999997664211111 128999999999874
No 49
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=9e-05 Score=66.34 Aligned_cols=118 Identities=21% Similarity=0.394 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCCCCccccHH--HHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPG--LVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGP 105 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~--~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~ 105 (202)
++.++++++||...|.|.|.+.|--+--.-+.++ .|.+|.+.|..+ ..+.-.++++.+||.+..++|||+.+|.+|+
T Consensus 119 d~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~-A~~~InR~~l~~fL~slK~~dGgFrmh~~GE 197 (423)
T KOG0365|consen 119 DDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSED-AYSSINREKLYQFLFSLKDPDGGFRMHVEGE 197 (423)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHH-HHHHhhHHHHHHHHHHhcCCCCCeEeecCCc
Confidence 4567889999999999999987654332233333 455777777643 2223346788999999999999999999988
Q ss_pred CcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh
Q 048279 106 STMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT 155 (202)
Q Consensus 106 s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~ 155 (202)
.++-+.--|+..-.+++...++ .-+--.+||.+- ||..+.|
T Consensus 198 ~DvRs~YcA~svasllni~~de---------L~eG~~~wi~~CQtyEGG~GG~P 242 (423)
T KOG0365|consen 198 VDVRSAYCALSVASLLNIPMDE---------LFEGTLDWIASCQTYEGGFGGEP 242 (423)
T ss_pred chHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHhcccccCCcCCCc
Confidence 7754432233333566765442 566677899873 5666555
No 50
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.79 E-value=9.9e-05 Score=64.88 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcccccCCCCcccc--------hHHHHHHHHHcCC--CCCCCCC---CCCchhHHHHH
Q 048279 75 VLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFG--------SVLNYVTLRLLGE--GANDGRG---ANDGRGAMERG 141 (202)
Q Consensus 75 ~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~--------T~~ay~AL~l~G~--~~~~p~~---~~~~~~~l~ra 141 (202)
....+.+.++++||++.|+++|||..+....+.-.. ++-++..|+.+-. ..-++-+ .....+++.||
T Consensus 63 ~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rg 142 (290)
T TIGR02474 63 AKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKG 142 (290)
T ss_pred hhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHH
Confidence 444678999999999999999999976543222222 4455555544321 1100100 12445699999
Q ss_pred HHHHHHcC
Q 048279 142 RSWILEHG 149 (202)
Q Consensus 142 ~~wI~~~G 149 (202)
++||++.+
T Consensus 143 id~ILktQ 150 (290)
T TIGR02474 143 IECILKTQ 150 (290)
T ss_pred HHHHHHhh
Confidence 99999876
No 51
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00037 Score=60.51 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCc--cccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGDYGGPM--FLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~~~~~--~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
-++-+.|+.+.|++||.+.+.-+-+. +.|-..|-.|.+....+ .+ .+.+.+.|+...|+|||++.....|+-+-
T Consensus 68 ~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~-~~---d~d~v~~yi~gLq~edGsF~gD~wGEvDT 143 (329)
T KOG0366|consen 68 REEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSIN-VL---DRDKVASYIKGLQQEDGSFSGDIWGEVDT 143 (329)
T ss_pred HHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccc-cc---cHHHHHHHHHhhcCcCCcccCCcccccch
Confidence 45678999999999999988755433 33333444444444322 12 35667999999999999987655554443
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~ 147 (202)
--+--|+.+|.++|.-..- .+++|.+|+++
T Consensus 144 Rfs~~av~~L~lLg~ld~~---------nve~aVd~~~~ 173 (329)
T KOG0366|consen 144 RFSYCAVACLALLGKLDTI---------NVEKAVDFVLS 173 (329)
T ss_pred hhhHHHHHHHHHHhhHHHh---------hHHHHHHHHHh
Confidence 3344567777888742222 58999999997
No 52
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0029 Score=55.86 Aligned_cols=134 Identities=19% Similarity=0.278 Sum_probs=84.4
Q ss_pred HHHHHHHHhccCCCCCcccCCCC--CccccHHHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCc
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGG--PMFLMPGLVITLSITGAL--NAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPST 107 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~--~~~~ta~~v~~l~~~g~~--~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~ 107 (202)
++++.|+.+.|+-||.+.-..++ --=.|-+.+..|+.+|.+ +...+...+++.++|+..+|..+||+-.. +.-
T Consensus 177 ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR---~NK 253 (347)
T KOG0367|consen 177 EKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGR---TNK 253 (347)
T ss_pred HHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCC---CCC
Confidence 47889999999999999754321 111233455566666654 22222233789999999999999997654 444
Q ss_pred ccchHHHH---HHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc-----CCCcchh---------hHHHHHHHhccCccC
Q 048279 108 MFGSVLNY---VTLRLLGEGANDGRGANDGRGAMERGRSWILEH-----GGATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 108 v~~T~~ay---~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~-----GG~~~~~---------~~~k~~Lal~G~~~W 170 (202)
..-|+.|+ ..|++++...-. --++-|+||++. ||-.+.| -+|-.-||++ +=
T Consensus 254 p~DTCYaFWigasLklL~~~~~~---------d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~---ee 321 (347)
T KOG0367|consen 254 PVDTCYAFWIGASLKLLDADWLI---------DKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALL---EE 321 (347)
T ss_pred CchhHHHHHHHHHHHHccchHhh---------hHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHh---cC
Confidence 55677654 567888644332 245778999875 7877775 2233333333 44
Q ss_pred CCCCCCCCch
Q 048279 171 NGLATIPFPL 180 (202)
Q Consensus 171 ~~~~~lP~El 180 (202)
++++++=|++
T Consensus 322 ~~~~~v~p~l 331 (347)
T KOG0367|consen 322 KGLSPVCPSL 331 (347)
T ss_pred CCCCCCCccc
Confidence 5666665544
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0021 Score=57.78 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=81.2
Q ss_pred HHHHHHHH--HHHHHHhccCCCCCcccCCCCCccccHHH--HHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 048279 26 IVTNTLRR--ALSYHSTLQAHDGHWPGDYGGPMFLMPGL--VITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 26 ~v~~ai~r--a~~~L~~~Q~~DG~W~g~~~~~~~~ta~~--v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
+.-++|+| -.+||.++.++||++.-..++-+-.-+.| +..-.+++. ..+|.-+...+||.++|+=.||.|..
T Consensus 166 ~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni----~~deL~eG~~~wi~~CQtyEGG~GG~ 241 (423)
T KOG0365|consen 166 DAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNI----PMDELFEGTLDWIASCQTYEGGFGGE 241 (423)
T ss_pred HHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHhcccccCCcCCC
Confidence 34455655 78999999999999987665544433333 223345565 23578888899999999999999987
Q ss_pred cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 102 IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 102 ~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
++.+.+--=|--+++||.+++.-..- .+++-.+|..+++.
T Consensus 242 P~~EAHGGYTFCalAalalLn~~d~l---------n~~~Ll~W~~~RQm 281 (423)
T KOG0365|consen 242 PGVEAHGGYTFCALAALALLNEMDQL---------NLEKLLEWAVRRQM 281 (423)
T ss_pred ccccccCCeeHHHHHHHHHHhhhhhh---------CHHHHHHHHHHhhh
Confidence 76655555677888889888754333 47888899988764
No 54
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.28 E-value=0.00036 Score=68.91 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhccCCCCcccccC--CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 80 HKKEMCRYVYNHQNRDGGWGLHIE--GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGgWg~~~~--g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
.--+.++||++.|.+|||||.... ..-.+..|..|++||+.=...++ .+.||.+||.++-
T Consensus 116 ~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~----------~i~rGl~fi~~nl 177 (800)
T PLN02592 116 QFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPE----------KCEKGMSFFRENI 177 (800)
T ss_pred CCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHH----------HHHHHHHHHHHHH
Confidence 344679999999999999997521 12346889999999988654432 7899999999863
No 55
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.12 E-value=0.0013 Score=57.95 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCCC--CC----ccc----cHHHHHHHHHh--CCCCC-CCCH-------HHHHHH
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYG--GP----MFL----MPGLVITLSIT--GALNA-VLSE-------EHKKEM 84 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~--~~----~~~----ta~~v~~l~~~--g~~~~-~~~~-------~~~~~~ 84 (202)
++..+|+.||++||++.|-++|.|+-.+. ++ .++ +...+..|... +..+. .+++ +.++|+
T Consensus 58 ~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kg 137 (289)
T PF09492_consen 58 PRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKG 137 (289)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHH
Confidence 46889999999999999999999997542 22 111 22222233222 22111 1222 457788
Q ss_pred HHHHHhhcc----CCCCcccccCC------------CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 85 CRYVYNHQN----RDGGWGLHIEG------------PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 85 ~~~L~~~Q~----~DGgWg~~~~g------------~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
+++|+..|- +=-+|+.-++. +..++++--+=+..-|+..+..+ .++..++..|++|+.++
T Consensus 138 i~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps----~~v~~aI~~AvaWl~~~ 213 (289)
T PF09492_consen 138 IDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS----PEVLAAIEAAVAWLESV 213 (289)
T ss_dssp HHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS------HHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHHhC
Confidence 999999998 34689864321 22233322222223344433222 25677889999999865
No 56
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=97.05 E-value=0.0016 Score=41.10 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCCCCCcccCCCCCcc--ccHHHHHHHHHhC
Q 048279 31 LRRALSYHSTLQAHDGHWPGDYGGPMF--LMPGLVITLSITG 70 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~~~~~~--~ta~~v~~l~~~g 70 (202)
++++.+||++.|++||+|.+..+.+.. .|-..+.+|.++|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 678999999999999999998766533 3333444565554
No 57
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.03 E-value=0.0015 Score=55.79 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCC-----------CCccccHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHhhcc
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYG-----------GPMFLMPGLVITLSITGALN---AVLSEEHKKEMCRYVYNHQN 93 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~-----------~~~~~ta~~v~~l~~~g~~~---~~~~~~~~~~~~~~L~~~Q~ 93 (202)
.+.|.++++||.++|++||+|...-. ....+|+..+++|.-.+... .+.....++++.+||.++.
T Consensus 48 ~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~- 126 (246)
T PF07678_consen 48 ENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHL- 126 (246)
T ss_dssp HHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhc-
Confidence 46789999999999999999975321 13446787788877766210 1223467999999998871
Q ss_pred CCCCcccccCCCCcccchHHHHHHHHHcC
Q 048279 94 RDGGWGLHIEGPSTMFGSVLNYVTLRLLG 122 (202)
Q Consensus 94 ~DGgWg~~~~g~s~v~~T~~ay~AL~l~G 122 (202)
....+.++.+.+-+||.++|
T Consensus 127 ---------~~~~~~Y~lAl~aYAL~la~ 146 (246)
T PF07678_consen 127 ---------DNIQDPYTLALVAYALALAG 146 (246)
T ss_dssp ---------GCTSSHHHHHHHHHHHHHTT
T ss_pred ---------cccCCHHHHHHHHHHHHhhc
Confidence 22356788888888898887
No 58
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0068 Score=53.86 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=83.2
Q ss_pred HHHHHHHHhccCCCCCcccCCCC--CccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCccc
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGG--PMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTMF 109 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~--~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~ 109 (202)
+-+++|+.+.|+=||.+...-.. -.-.|-+.+.++.+++.++ .+++ +++..+||.++|-+-||....+.---+.-
T Consensus 177 e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld-~ls~--~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~C 253 (342)
T COG5029 177 EGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLD-KLSD--VEKLIRWLAERQLSSGGLNGRSNKLVDTC 253 (342)
T ss_pred HHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhccc-ccch--HHHHHHHHHHcccccCCcCCCcccCccch
Confidence 45778999999999999875422 2122334455677888776 4554 67889999999999998765432222333
Q ss_pred chHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc-----CCCcchh----hH--HHHHHHhccCccCCCCCCCCC
Q 048279 110 GSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH-----GGATALT----SW--GKMWLSVLYLEHLNGLATIPF 178 (202)
Q Consensus 110 ~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~-----GG~~~~~----~~--~k~~Lal~G~~~W~~~~~lP~ 178 (202)
=..|++..|.++|...=- .=++-.+||+.+ ||...-| .. |-+-||=+-+..-+.++++-|
T Consensus 254 Ys~WvlsSl~il~~~~~i---------n~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~l~~v~p 324 (342)
T COG5029 254 YSFWVLSSLAILGKLDFI---------NTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKYLNPVDP 324 (342)
T ss_pred hhhhhcchHHhcchhhhc---------CHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCCCCCC
Confidence 345577778888732211 125667899975 4555443 22 223333333445566665555
No 59
>PLN02279 ent-kaur-16-ene synthase
Probab=96.78 E-value=0.0016 Score=64.32 Aligned_cols=59 Identities=22% Similarity=0.486 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCC----CcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 80 HKKEMCRYVYNHQNRDGGWGLHIEGP----STMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGgWg~~~~g~----s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
.--+..+||++.|.+|||||.....+ -.+..|..+++||+.=+..++ .+.|+..||.++
T Consensus 74 ~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~~----------~~~~gl~fi~~n 136 (784)
T PLN02279 74 LFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGEE----------QINKGLQFIELN 136 (784)
T ss_pred CChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCcc----------cchhhHHHHHHH
Confidence 44568999999999999999753322 347889999999998776544 578999998865
No 60
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=95.87 E-value=0.045 Score=49.08 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc--CCCcchh-h
Q 048279 80 HKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH--GGATALT-S 156 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~--GG~~~~~-~ 156 (202)
.+++.++.|.+.|.+||..| ++++|.+|.-||..++..+... ...+.++.++|++. .|.=..| .
T Consensus 216 ~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~------~w~C~k~~~~ll~~i~~G~F~nP~a 282 (326)
T PF01122_consen 216 AIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSES------EWNCQKALDALLKEISQGAFQNPMA 282 (326)
T ss_dssp HHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHH------HHHHHHHHHHHHHHHTTTTT-SHHH
T ss_pred HHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcch------hhHHHHHHHHHHHHhhcCCCCCHHH
Confidence 46677788899999999865 7899999999999887654320 12699999999986 2333333 4
Q ss_pred HHHHHHHhcc
Q 048279 157 WGKMWLSVLY 166 (202)
Q Consensus 157 ~~k~~Lal~G 166 (202)
..++..|+.|
T Consensus 283 ~aQiLPaL~g 292 (326)
T PF01122_consen 283 IAQILPALNG 292 (326)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 4455555554
No 61
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.00 E-value=0.088 Score=44.90 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC-CCcchhhHH
Q 048279 80 HKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG-GATALTSWG 158 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G-G~~~~~~~~ 158 (202)
.+++...||...|++|||...+.+-++++..|-.|.-.+-++|.+ .| ..++-++||.++= -....-.++
T Consensus 7 ~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~e--vP--------r~EktiefL~d~~qt~~~~~a~~ 76 (274)
T COG1689 7 NLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHE--VP--------RKEKTIEFLYDQMQTAGVGVAMA 76 (274)
T ss_pred hHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCc--Cc--------hHHHHHHHHHHHHHHhhhHHHHH
Confidence 467889999999999999998877677766666666555566543 44 6899999999821 111111234
Q ss_pred HHHHHhccCccCCCC
Q 048279 159 KMWLSVLYLEHLNGL 173 (202)
Q Consensus 159 k~~Lal~G~~~W~~~ 173 (202)
--.|+++|.-+-..-
T Consensus 77 ~~~l~~lg~~d~~r~ 91 (274)
T COG1689 77 IEFLRILGAKDLARN 91 (274)
T ss_pred HHHHHHhcccccchh
Confidence 456777777666543
No 62
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=93.90 E-value=0.12 Score=45.59 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhccCCCCccccc-CCCC-----ccc--chHHHHHHHHHc--CCCCCC--CCC-CCCchhHHHHHHHH
Q 048279 78 EEHKKEMCRYVYNHQNRDGGWGLHI-EGPS-----TMF--GSVLNYVTLRLL--GEGAND--GRG-ANDGRGAMERGRSW 144 (202)
Q Consensus 78 ~~~~~~~~~~L~~~Q~~DGgWg~~~-~g~s-----~v~--~T~~ay~AL~l~--G~~~~~--p~~-~~~~~~~l~ra~~w 144 (202)
.+...|+++||++.|.++|||..+. ...+ +.. ..+-++.-|+.+ |..+-+ +++ .+...+++.||.++
T Consensus 61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~c 140 (289)
T PF09492_consen 61 REAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDC 140 (289)
T ss_dssp HHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999753 2211 111 122233333333 222110 000 11445689999999
Q ss_pred HHHcCC
Q 048279 145 ILEHGG 150 (202)
Q Consensus 145 I~~~GG 150 (202)
|++.+-
T Consensus 141 iL~tQi 146 (289)
T PF09492_consen 141 ILKTQI 146 (289)
T ss_dssp HHHHS-
T ss_pred HHHHHc
Confidence 998764
No 63
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.89 E-value=0.12 Score=44.03 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=41.3
Q ss_pred CccccHHHHH--HHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc-ccCCCCcccchHHHHHHHHHc
Q 048279 55 PMFLMPGLVI--TLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL-HIEGPSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 55 ~~~~ta~~v~--~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~-~~~g~s~v~~T~~ay~AL~l~ 121 (202)
|.++.+.+.. .+.++|.. . -+..-++||.+.||+|||+.- +..|.|+.-.|--|+..|+.+
T Consensus 208 PPYiE~t~ya~r~lelL~~k-~-----~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l 271 (274)
T COG1689 208 PPYIEPTFYALRGLELLGGK-Y-----CISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLASL 271 (274)
T ss_pred CCccchHHHHHhHHHHHccC-c-----CchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHHH
Confidence 5555444332 45666642 1 134568999999999999985 346778888888887777654
No 64
>PLN02592 ent-copalyl diphosphate synthase
Probab=93.70 E-value=0.12 Score=51.52 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=37.2
Q ss_pred HHHHHHHhccCCCCCcccCCCC----CccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh
Q 048279 33 RALSYHSTLQAHDGHWPGDYGG----PMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 33 ra~~~L~~~Q~~DG~W~g~~~~----~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
.+++||++.|.+||+|...... ...-|..+++||...+. .++.++++.+||.+.
T Consensus 119 ~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-----~~~~i~rGl~fi~~n 176 (800)
T PLN02592 119 SSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNL-----HPEKCEKGMSFFREN 176 (800)
T ss_pred HHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhc-----cHHHHHHHHHHHHHH
Confidence 5899999999999999775211 11234455666655443 246789999999864
No 65
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=93.01 E-value=0.36 Score=43.32 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHhhccCCCCcc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSE--EHKKEMCRYVYNHQNRDGGWG 99 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~--~~~~~~~~~L~~~Q~~DGgWg 99 (202)
...+..+|++.++.+.+.|.+||++. |.|.|+..+-+|...+. ...+ -...++.+.|+... +||.+.
T Consensus 210 ~~~i~~~i~~~~~kIl~~q~~~G~~G-----NiySTglAmQAL~~~~~---~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 210 RRRIQQAIRSLVEKILSQQKPNGLFG-----NIYSTGLAMQALSVSPS---PPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHHHHHHHHHHHHHHHHTB-TTS-BS-----STTTHHHHHHHHTT-SS----SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccc-----chhhHHHHHHHHhcCCC---CCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 46899999999999999999999984 66778877777777765 2233 34678899999865 599876
No 66
>PLN02279 ent-kaur-16-ene synthase
Probab=90.58 E-value=0.42 Score=47.66 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHHhccCCCCCcccCCCCC------ccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh
Q 048279 33 RALSYHSTLQAHDGHWPGDYGGP------MFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN 90 (202)
Q Consensus 33 ra~~~L~~~Q~~DG~W~g~~~~~------~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~ 90 (202)
.+++|++++|.+||+|......+ ...|.-++++|...+.. ++.+++++.||.+
T Consensus 77 ~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~-----~~~~~~gl~fi~~ 135 (784)
T PLN02279 77 ECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVG-----EEQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcC-----cccchhhHHHHHH
Confidence 48999999999999997543222 12344456666665432 2456777777764
No 67
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=87.34 E-value=4.7 Score=38.89 Aligned_cols=114 Identities=15% Similarity=0.216 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhccCCC-CCcccCCC--------CCc---cc--cHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh
Q 048279 26 IVTNTLRRALSYHSTLQAHD-GHWPGDYG--------GPM---FL--MPGLVITLSITGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~D-G~W~g~~~--------~~~---~~--ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
.+...+++++--|+.++.++ |.-.+... +.+ .. .+..+.+|-.+|. .+..++..+||.+.
T Consensus 253 ~~~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~------~~~a~~~l~~l~~~ 326 (616)
T TIGR01577 253 KIYSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGY------HDRVDRFFRWAMQT 326 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCC------HHHHHHHHHHHHHh
Confidence 55678888888888888766 76433211 111 11 3344556666775 56788899999999
Q ss_pred ccCCCCccc--ccCC-------CCcccchHHHHHHH----HHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 92 QNRDGGWGL--HIEG-------PSTMFGSVLNYVTL----RLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 92 Q~~DGgWg~--~~~g-------~s~v~~T~~ay~AL----~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
|.+||+|-. +++| .-++..|+..+.|+ +..|.. +- -.+.-+.++++.+|+.++.
T Consensus 327 q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~-~~---~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 327 QSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDR-AF---LEEIWESVQKAAQYLILFI 393 (616)
T ss_pred hCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCH-HH---HHHHHHHHHHHHHHHHHhc
Confidence 999999832 2222 11222344444343 333321 10 0012237899999999975
No 68
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=83.80 E-value=1.7 Score=38.29 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHhccC-CCCCcccCC--------CCCcc------ccHHHHHHHHHhCCCCC--CCCHHHHHHHHHHH
Q 048279 26 IVTNTLRRALSYHSTLQA-HDGHWPGDY--------GGPMF------LMPGLVITLSITGALNA--VLSEEHKKEMCRYV 88 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~-~DG~W~g~~--------~~~~~------~ta~~v~~l~~~g~~~~--~~~~~~~~~~~~~L 88 (202)
-++.|++....+...... ++|-|...+ +..+. ...+++.++..+-.... ..-.+..++.++.|
T Consensus 145 ~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l 224 (336)
T PF07470_consen 145 YLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADAL 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 467777777777777775 488775321 11112 22233334444421000 00013455677888
Q ss_pred HhhccCCCCcccccCC-----CCcccchHHHHHHH-H--HcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 89 YNHQNRDGGWGLHIEG-----PSTMFGSVLNYVTL-R--LLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 89 ~~~Q~~DGgWg~~~~g-----~s~v~~T~~ay~AL-~--l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
.+.|.+||.|...... ..+.|+|+..-++| + ..|...+ ..-.+...|+.+.|.++
T Consensus 225 ~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~-----~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 225 ARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDP-----EEYRPAAEKALEALLSN 287 (336)
T ss_dssp HTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTH-----HHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHHHHHHhC
Confidence 9999999999865433 34688888866666 3 2454311 12234788888888888
No 69
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=81.64 E-value=6.6 Score=37.91 Aligned_cols=91 Identities=15% Similarity=0.261 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhccCCCCCcccCC--CCCcc---------ccHHHHHHH--HHhCCCCCCCCH---HHHHHHHHHHHhhc
Q 048279 29 NTLRRALSYHSTLQAHDGHWPGDY--GGPMF---------LMPGLVITL--SITGALNAVLSE---EHKKEMCRYVYNHQ 92 (202)
Q Consensus 29 ~ai~ra~~~L~~~Q~~DG~W~g~~--~~~~~---------~ta~~v~~l--~~~g~~~~~~~~---~~~~~~~~~L~~~Q 92 (202)
+..++.++||.+.|.+||+|.-.+ .+... .++..+.++ +..-..+..+.+ +.++++++|+.++.
T Consensus 314 ~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 314 DRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred HHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788999999999999985321 11100 022223233 221111111111 46789999999965
Q ss_pred c------CCCCcccccCCCCcccchHHHHHHHHHc
Q 048279 93 N------RDGGWGLHIEGPSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 93 ~------~DGgWg~~~~g~s~v~~T~~ay~AL~l~ 121 (202)
. ..|-|.... |. .+++.+..|.||+.+
T Consensus 394 ~~~l~~~~~~lWEer~-G~-~~~t~a~~~aAL~~a 426 (616)
T TIGR01577 394 DPETPLPCRDLWEERE-GV-FTYTASAVYGGLDAA 426 (616)
T ss_pred cCCCCCCCCccceecC-Cc-cCccHHHHHHHHHHH
Confidence 2 334576543 33 467788899999765
No 70
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=80.96 E-value=5 Score=35.35 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCc---cc----cHHHHHHHHH---hCCCCCCCCHHHHHHHHHHHHhh-c
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPM---FL----MPGLVITLSI---TGALNAVLSEEHKKEMCRYVYNH-Q 92 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~---~~----ta~~v~~l~~---~g~~~~~~~~~~~~~~~~~L~~~-Q 92 (202)
.+.+.+.+++.++.|.+.|.+||.|...+.-+- +. ++.++.++.. .|..+.....+..+++.+.|.++ -
T Consensus 210 ~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~ 289 (336)
T PF07470_consen 210 RDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAI 289 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCcc
Confidence 356778888889999999999999986543222 32 2222233321 24322111224677888999999 7
Q ss_pred cCCCC
Q 048279 93 NRDGG 97 (202)
Q Consensus 93 ~~DGg 97 (202)
++||.
T Consensus 290 ~~dG~ 294 (336)
T PF07470_consen 290 DPDGK 294 (336)
T ss_dssp -TTSS
T ss_pred CCCCC
Confidence 78877
No 71
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=76.48 E-value=22 Score=34.99 Aligned_cols=112 Identities=9% Similarity=0.088 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhccCCC--CCcccCCCC------------Cccc-----cHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 048279 26 IVTNTLRRALSYHSTLQAHD--GHWPGDYGG------------PMFL-----MPGLVITLSITGALNAVLSEEHKKEMCR 86 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~D--G~W~g~~~~------------~~~~-----ta~~v~~l~~~g~~~~~~~~~~~~~~~~ 86 (202)
...+.++|++--|+.++..+ |.-.+.... .+-+ .+..+.+|-.+|. .+..++..+
T Consensus 248 ~~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~------~~~a~~~~~ 321 (648)
T TIGR01535 248 KGNSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGD------VDSALRSLD 321 (648)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCC------HHHHHHHHH
Confidence 57788999999999999864 876543211 1111 2234456767775 466788999
Q ss_pred HHHhhccCCCCccc--ccCC-----CCcccchHHHHHHHHHcCC-CCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 87 YVYNHQNRDGGWGL--HIEG-----PSTMFGSVLNYVTLRLLGE-GANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 87 ~L~~~Q~~DGgWg~--~~~g-----~s~v~~T~~ay~AL~l~G~-~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
||.+.|.+||.|-. +.+| +-++..|++-+.++-.+.. +... ..+.++++.+||.++|
T Consensus 322 ~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~------~~~~vk~aadfl~~~~ 386 (648)
T TIGR01535 322 YLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAF------YDKMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHcC
Confidence 99999999999832 2233 2344556555444333211 1111 1237999999999987
No 72
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=76.09 E-value=29 Score=34.13 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhccCCCCCcccCC--CCCc-------cccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcc-C-CCC
Q 048279 29 NTLRRALSYHSTLQAHDGHWPGDY--GGPM-------FLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQN-R-DGG 97 (202)
Q Consensus 29 ~ai~ra~~~L~~~Q~~DG~W~g~~--~~~~-------~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~-~-DGg 97 (202)
+..++.++||.+.|.+||+|.-.+ .+.. =.++..+.+++.+.+.+.....+.++++++||.++-. + -|=
T Consensus 314 ~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~~~vk~aadfl~~~~p~p~~d~ 393 (648)
T TIGR01535 314 DSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYDKMLKPAADFIVKNGPKTGQER 393 (648)
T ss_pred HHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 567889999999999999986432 1111 1244455554444332211223578999999999632 2 355
Q ss_pred cccccCCCCcccchHHHHHHHHHc
Q 048279 98 WGLHIEGPSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 98 Wg~~~~g~s~v~~T~~ay~AL~l~ 121 (202)
|.+.. .-..++.+..|+||..+
T Consensus 394 WEer~--g~~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 394 WEEIG--GYSPSTLAAEIAGLTAA 415 (648)
T ss_pred ccccC--CcCchhHHHHHHHHHHH
Confidence 65532 23356777777887554
No 73
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=75.11 E-value=7.3 Score=41.56 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCccc--C--CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPG--D--YGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWG 99 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g--~--~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg 99 (202)
++....-|+.+..-.+.-+++||++.. + ..+++.+|+..+-.+..... -..+++..+.++..||.++|.+||++-
T Consensus 966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~-~i~id~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKE-YIFIDPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccC-ceEecHHHHHHHHHHHHHhhccCceEe
Confidence 345666777787888888899999974 3 44566666655444443332 123678889999999999999999986
Q ss_pred cc
Q 048279 100 LH 101 (202)
Q Consensus 100 ~~ 101 (202)
..
T Consensus 1045 e~ 1046 (1436)
T KOG1366|consen 1045 EV 1046 (1436)
T ss_pred cc
Confidence 53
No 74
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=72.96 E-value=7.5 Score=41.98 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhccCCCCcccccC-CCCcccchHHHHHHHHHcCCC-CCCCCCCCCchhHHHHHHHH
Q 048279 78 EEHKKEMCRYVYNHQNRDGGWGLHIE-GPSTMFGSVLNYVTLRLLGEG-ANDGRGANDGRGAMERGRSW 144 (202)
Q Consensus 78 ~~~~~~~~~~L~~~Q~~DGgWg~~~~-g~s~v~~T~~ay~AL~l~G~~-~~~p~~~~~~~~~l~ra~~w 144 (202)
+..++.++.-|.+.|+.||+++++.+ +.++..-|+.++..|.-+..- -.-| .+++.++.++
T Consensus 1198 ~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp------~~~~~~~~~~ 1260 (1621)
T COG2373 1198 RARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAREQGYSVP------SDALNQMLER 1260 (1621)
T ss_pred HHHHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhhcCcCCC------HHHHHHHHHH
Confidence 35678899999999999999999877 788999999988777555321 1122 2378887443
No 75
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=65.63 E-value=37 Score=30.94 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccCC----CCCcc-c--cHHHHHHHHH---hCCCCCCCCHHHHHHHHHHHHhhc
Q 048279 23 TEDIVTNTLRRALSYHSTLQAHDGHWPGDY----GGPMF-L--MPGLVITLSI---TGALNAVLSEEHKKEMCRYVYNHQ 92 (202)
Q Consensus 23 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~----~~~~~-~--ta~~v~~l~~---~g~~~~~~~~~~~~~~~~~L~~~Q 92 (202)
+...+...+++-++-|.+.|+++|-|.--+ .+|.. . ++.++.++.. .|.++ .-..+..+|+.+=|+.+-
T Consensus 226 ~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~-~~~~~~~~kA~~aLl~~i 304 (357)
T COG4225 226 DRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILD-PEYAPVAEKALDALLGHI 304 (357)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHhhc
Confidence 567899999999999999999999997521 22222 2 2333333333 45443 122358899999999987
Q ss_pred cCCC
Q 048279 93 NRDG 96 (202)
Q Consensus 93 ~~DG 96 (202)
.++|
T Consensus 305 ~~~g 308 (357)
T COG4225 305 DEEG 308 (357)
T ss_pred cccc
Confidence 7655
No 76
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=64.77 E-value=20 Score=33.41 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCCC---CccccHHH----HHHHH----HhCCCCCCCCH---HHHHHHHHHHHhhcc
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYGG---PMFLMPGL----VITLS----ITGALNAVLSE---EHKKEMCRYVYNHQN 93 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~---~~~~ta~~----v~~l~----~~g~~~~~~~~---~~~~~~~~~L~~~Q~ 93 (202)
...++++++.+...|.+||.++....+ .....+.+ ++.++ ..|- ..+-+ +.+++.++|+.++.+
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD--~~~l~~~~~~~~~~l~~~~~~~~ 245 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGD--REFLEEYYPAMKRYLDYLERRVD 245 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHTTB-
T ss_pred HHHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999874322 22222222 22211 1232 11111 356778888888877
Q ss_pred C----CCCcccccCC----------CCcccchHHHHHHHHHc
Q 048279 94 R----DGGWGLHIEG----------PSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 94 ~----DGgWg~~~~g----------~s~v~~T~~ay~AL~l~ 121 (202)
+ ...|++-... +.....|++.|.+|+.+
T Consensus 246 ~~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (509)
T PF05592_consen 246 DGLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAA 287 (509)
T ss_dssp TSSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHH
T ss_pred ccccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHH
Confidence 7 2344432222 34455677777777654
No 77
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=57.31 E-value=26 Score=37.62 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=56.3
Q ss_pred cCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHH-------HhhccCCCCcccccCCCCcccchHHHHHHHHHcC
Q 048279 50 GDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYV-------YNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLG 122 (202)
Q Consensus 50 g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L-------~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G 122 (202)
||-+-+|+.-+.-+++++.+...+ ...++..++|.++| +..+++||+...+-+ ...-..|.+.-+.||.+.
T Consensus 936 GcGEQnMi~faPni~v~~YL~~t~-q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~-~~~~~stWLtafvlr~f~ 1013 (1436)
T KOG1366|consen 936 GCGEQNMINFAPNIYVLKYLPKTN-QLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGS-SDRSGSTWLTAFVLRVFS 1013 (1436)
T ss_pred CcccceeecccchhhHHHHHhhhh-ccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcC-CCCcccHHHHHHHHHHhh
Confidence 344556776666666666664322 24455555555554 557889999987644 223345555566677765
Q ss_pred CCCC----CCCCCCCchhHHHHHHHHHHHcC
Q 048279 123 EGAN----DGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 123 ~~~~----~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
...+ ++ + .+.+|.+||..+.
T Consensus 1014 ~a~~~i~id~--~-----~i~~a~~wl~~~Q 1037 (1436)
T KOG1366|consen 1014 QAKEYIFIDP--N-----VITQALNWLSQQQ 1037 (1436)
T ss_pred hccCceEecH--H-----HHHHHHHHHHHhh
Confidence 3322 22 2 8999999999985
No 78
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.87 E-value=59 Score=29.64 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=66.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCCCCCcccCC---CCCccccHHHH------HHHHHhCCCCCCCCHHHHHHHHHHHH
Q 048279 19 TEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDY---GGPMFLMPGLV------ITLSITGALNAVLSEEHKKEMCRYVY 89 (202)
Q Consensus 19 ~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~---~~~~~~ta~~v------~~l~~~g~~~~~~~~~~~~~~~~~L~ 89 (202)
|.+.+.+.++..+++--+| ..-|| |++|- .-+++ ..++ +-.++.+..+....+..++++.+|..
T Consensus 169 G~~~d~~~i~~~l~~~e~~----Y~GdG-WY~DG~~~~~DYY--ns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~ 241 (361)
T PF10022_consen 169 GEEYDEERIDYDLERIEEW----YLGDG-WYSDGPEFQFDYY--NSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAE 241 (361)
T ss_pred CCCCcHHHHHHHHHHHHHH----hccCC-ccccCCccCCcch--HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 4556666666666665544 44555 44432 22322 2222 22344454331223346777888887
Q ss_pred hhcc---CCCCcccccCCCCccc--chHHHHHHHHHcCC--CCC-CCCCCCCchhHHHHHHHHHHHcC
Q 048279 90 NHQN---RDGGWGLHIEGPSTMF--GSVLNYVTLRLLGE--GAN-DGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 90 ~~Q~---~DGgWg~~~~g~s~v~--~T~~ay~AL~l~G~--~~~-~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
...+ +||.-- +-|.|-.+ +.+..+.++.+++. .+- + ++.++.++-+..+|..++.
T Consensus 242 ~~~~~f~~dG~~~--~~GRSltYRfA~~a~~~~~a~~~~lp~~~~~---~g~vR~~l~~~lr~~~~~p 304 (361)
T PF10022_consen 242 DYERMFSPDGAAP--PFGRSLTYRFAAFAFLAAAALAGVLPEPLIS---PGQVRRALSRVLRWWLEQP 304 (361)
T ss_pred HHHHHcCCCCCcC--CccccHHHHHHHHHHHHHHHHcCCCCccCCC---HHHHHHHHHHHHHHHHhCC
Confidence 7655 787643 23555444 34445667777776 222 3 3677778888888888884
No 79
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=49.86 E-value=61 Score=28.54 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccC
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGD 51 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~ 51 (202)
+++.+.++++++|+.+.+.++|.|+..
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 468889999999999999999999753
No 80
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=49.69 E-value=2.6 Score=24.05 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=7.3
Q ss_pred HHHhhccCCCCcc
Q 048279 87 YVYNHQNRDGGWG 99 (202)
Q Consensus 87 ~L~~~Q~~DGgWg 99 (202)
+|-..|++||.|.
T Consensus 4 ~I~~s~RpDGt~R 16 (27)
T PF09282_consen 4 IIPASQRPDGTWR 16 (27)
T ss_dssp EE--EE-TTS-EE
T ss_pred CcCcccCCCCCcc
Confidence 4567899999996
No 81
>PRK13621 psbV cytochrome c-550; Provisional
Probab=47.66 E-value=55 Score=26.81 Aligned_cols=59 Identities=15% Similarity=0.396 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 048279 27 VTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL 100 (202)
Q Consensus 27 v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~ 100 (202)
.+++|..-++|++.-+.-||.=.- +++-+.. .+ .++++.++..+.||+.+-..++|||.
T Consensus 105 ~rd~I~~LV~~iknPms~kg~~~~-~~~~mps----------~~----~LSdeEL~aIAaYLL~qA~~~~~Wg~ 163 (170)
T PRK13621 105 PRDNIAALVAYQRDPMSYDGSEES-YGCRQVP----------ED----WMTDEELQNLAAFILRAAQKAPGWGT 163 (170)
T ss_pred chHHHHHHHHHhhCCCCCCccccc-ccccCCc----------cC----CCCHHHHHHHHHHHHhhhhhccCCCC
Confidence 357788888999988887773100 0000000 01 36688899999999998777899985
No 82
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=47.24 E-value=67 Score=35.05 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHHHHHHhccCCCCCcc---cCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHHhhccC
Q 048279 21 DVTEDIVTNTLRRALSYHSTLQAHDGHWP---GDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCR-YVYNHQNR 94 (202)
Q Consensus 21 ~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~---g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~-~L~~~Q~~ 94 (202)
....+.++..++.++.=|.++|..||++. +.-.++.++|+..+-.+-.........+++.+.++.. ++...||+
T Consensus 1191 ~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1191 GAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred cccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHHhCc
Confidence 44566788999999999999999999853 3455677888876543322233233567778888744 56666775
No 83
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=46.55 E-value=56 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.370 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 048279 27 VTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL 100 (202)
Q Consensus 27 v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~ 100 (202)
.+++|..-++|+..-|.-||.=+-- ..-+.. ...++++.++..+.||+.+-...+|||.
T Consensus 94 ~Rd~I~~Lv~~iknP~s~kG~~~~~-~~~mp~--------------~~~LsdeEL~aIAaYLl~qa~~~~~Wg~ 152 (155)
T TIGR03046 94 PRDTIQSLVAYQRDPMSYDGSEESY-GCRPVP--------------EDWMDDEEVENLAAFILRAAQKAPGWGV 152 (155)
T ss_pred chHHHHHHHHHhhCCcccCcccccc-cccCCc--------------ccCCCHHHHHHHHHHHHHhhhhcCCCCC
Confidence 3457888888998888877741100 000000 0136688899999999998888889984
No 84
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=45.14 E-value=78 Score=27.76 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhccC--CCCCcccCC--CC------CccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhc-c
Q 048279 25 DIVTNTLRRALSYHSTLQA--HDGHWPGDY--GG------PMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQ-N 93 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~--~DG~W~g~~--~~------~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q-~ 93 (202)
+...+..+++++||.+.-. .+|.|.... ++ +.+..+..++++........+-..+..+++.++|.++- +
T Consensus 39 ~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~~~~~~A~~~~~~l~~~~~d 118 (346)
T PF07221_consen 39 PEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDPEALELAEQTLEFLERRFWD 118 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-TTHHHHHHHHHHHHHHHTEE
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Confidence 3477789999999999985 568886432 22 22233444444433211111222466778889988874 5
Q ss_pred CC-CCcccc
Q 048279 94 RD-GGWGLH 101 (202)
Q Consensus 94 ~D-GgWg~~ 101 (202)
++ |++...
T Consensus 119 ~~~g~~~~~ 127 (346)
T PF07221_consen 119 PEGGGYRES 127 (346)
T ss_dssp TTTTEE--E
T ss_pred cccCcceec
Confidence 65 554443
No 85
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=42.89 E-value=96 Score=29.36 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPG 50 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g 50 (202)
+++.+-+++.++.|.+.|++||+-..
T Consensus 79 ~~l~~~~d~~V~~l~~~Q~~dGYl~~ 104 (520)
T PF07944_consen 79 PELKAKADEIVDELAAAQQPDGYLGT 104 (520)
T ss_pred HHHHHHHHHHHHHHHHhccCCceecc
Confidence 46888899999999999999996654
No 86
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=40.59 E-value=77 Score=28.89 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHHHhccCCC-CCcccCC--------CCC-----cc---ccHHHHHH----HHHhCCCCCCCCH----
Q 048279 24 EDIVTNTLRRALSYHSTLQAHD-GHWPGDY--------GGP-----MF---LMPGLVIT----LSITGALNAVLSE---- 78 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~D-G~W~g~~--------~~~-----~~---~ta~~v~~----l~~~g~~~~~~~~---- 78 (202)
++-+++++..=.....-+|.|+ |=|+--| ..+ .| ...-++++ +..+-. +.+ +.
T Consensus 154 ~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~-~~~-~r~~l~ 231 (357)
T COG4225 154 PEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPE-DHP-DRRELL 231 (357)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCC-CCc-hHHHHH
Confidence 3457777777777777788877 7765321 111 11 01122232 233322 111 11
Q ss_pred HHHHHHHHHHHhhccCCCCcccccCC-----CCcccchHHHHHHHHH---cCC-CCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 79 EHKKEMCRYVYNHQNRDGGWGLHIEG-----PSTMFGSVLNYVTLRL---LGE-GANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 79 ~~~~~~~~~L~~~Q~~DGgWg~~~~g-----~s~v~~T~~ay~AL~l---~G~-~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
...+..++-|.+.|.++|=|-.-.+. .-+.|+|+.-.+||.. +|. +++- ++.++||.+-|+.+
T Consensus 232 ~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~-------~~~~~kA~~aLl~~ 303 (357)
T COG4225 232 NVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEY-------APVAEKALDALLGH 303 (357)
T ss_pred HHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchh-------hHHHHHHHHHHHhh
Confidence 23444567788899999999753332 2356777774444444 453 2221 23899999988876
No 87
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=38.68 E-value=3e+02 Score=25.51 Aligned_cols=128 Identities=15% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCc--ccCCC--CCc-cc---cHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCC--
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHW--PGDYG--GPM-FL---MPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRD-- 95 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W--~g~~~--~~~-~~---ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~D-- 95 (202)
++.+.|+.+++-.-..++++|+= ..+.. |+. |. ...-++++-.+|-- ..+++.-++..+.|+|..||-
T Consensus 261 ~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~Gn~l~MDDaNvPSLLa~PYLG~c--~~dDpvY~~TRk~iLS~eNPYy~ 338 (434)
T COG3538 261 ELANEIQQGIEQFGKMDHPKGGEIYAYEVDGLGNQLFMDDANVPSLLAAPYLGFC--EKDDPVYQNTRKTILSSENPYYY 338 (434)
T ss_pred HHHHHHHHHHHHhceecCCCCCeeEEEEecCCCceeeccCCCchhhhhhhhhccc--cCCCHHHHHHHHHHHhcCCCcee
Confidence 57889999999999999998873 33321 222 21 22334555566642 234567788899999999984
Q ss_pred -CCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH-cCCCcchh---------hHHHHHHH
Q 048279 96 -GGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE-HGGATALT---------SWGKMWLS 163 (202)
Q Consensus 96 -GgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~-~GG~~~~~---------~~~k~~La 163 (202)
|.-.--.+++.+...++|-+ ||.+-|...+|. . ..+.-.++|.. ++|-.-++ .|||=|.|
T Consensus 339 eG~~a~GiGSpHTp~~yvWpi-aLaiqgLTa~D~--~-----ek~~iL~~L~~tdaGTg~MHE~f~vd~P~~fTR~WFs 409 (434)
T COG3538 339 EGKYASGIGSPHTPDHYVWPI-ALAIQGLTANDD--S-----EKKEILDMLKATDAGTGLMHEGFDVDDPEQFTREWFS 409 (434)
T ss_pred cceeeccCCCCCCCCcccchH-HHHHhhcccCCh--H-----HHHHHHHHHHhccCCccceecccCCCCHHHhhhHHHH
Confidence 44333345566777777743 477777665553 1 56667777775 45544333 67776655
No 88
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=35.93 E-value=74 Score=30.13 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhccCCCCcccc
Q 048279 79 EHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 79 ~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
+.+++.++.|.++|.+||=-+-+
T Consensus 83 ~~~d~~V~~l~~~Q~~dGYl~~~ 105 (520)
T PF07944_consen 83 AKADEIVDELAAAQQPDGYLGTY 105 (520)
T ss_pred HHHHHHHHHHHHhccCCceeccc
Confidence 45777899999999999844443
No 89
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=30.32 E-value=23 Score=30.90 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=17.8
Q ss_pred CCCCCCCcccccCCCCCChHHHHHHHHHHHHHHHhcc
Q 048279 6 PGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTLQ 42 (202)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q 42 (202)
|.-|++|+|.| ++.|++|+.++|
T Consensus 147 NPNQRLPKVEI--------------LRsAI~YIE~Lq 169 (284)
T KOG3960|consen 147 NPNQRLPKVEI--------------LRSAIRYIERLQ 169 (284)
T ss_pred CccccccHHHH--------------HHHHHHHHHHHH
Confidence 67788888876 677778887776
No 90
>PLN03005 beta-fructofuranosidase
Probab=29.41 E-value=1.3e+02 Score=28.88 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 048279 57 FLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGP 105 (202)
Q Consensus 57 ~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~ 105 (202)
++...++.++.-+|+ .+..+++++ +.+++++-..|.+|++|.
T Consensus 453 ~Llw~~~aA~iK~gr------~~lA~ral~-~ae~rl~~d~WpEyydGk 494 (550)
T PLN03005 453 VLLWQLTAACIKTGR------PQIARRAVD-LIESRLHRDCWPEYYDGK 494 (550)
T ss_pred HHHHHHHHHHHHcCC------HHHHHHHHH-HHHHHhhhcCchhhcCCC
Confidence 444556667666776 344444444 334556666899888763
No 91
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=29.24 E-value=1.6e+02 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCC
Q 048279 58 LMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEG 104 (202)
Q Consensus 58 ~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g 104 (202)
+.-.++.++.-+|+ .+..+++ -.....|..+..|.++.+|
T Consensus 366 LlW~~~aA~ik~gr------~~lA~~a-l~~a~~rL~~dewpEyydG 405 (436)
T PF12899_consen 366 LLWFLTAALIKMGR------PELAERA-LEAAENRLSKDEWPEYYDG 405 (436)
T ss_pred HHHHHHHHHHHcCC------HHHHHHH-HHHHHHhhcccCCcccccC
Confidence 33444455545565 3444443 3346667777789998765
No 92
>PRK13739 conjugal transfer protein TraP; Provisional
Probab=28.69 E-value=1e+02 Score=25.61 Aligned_cols=41 Identities=5% Similarity=-0.056 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCC
Q 048279 114 NYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLA 174 (202)
Q Consensus 114 ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~ 174 (202)
+++++..+-.++..| .+.|.+-+++....+- .|+|++..++
T Consensus 41 aLlv~lvlw~dnTTP------G~~lvqeI~~Vr~~~p--------------ag~fpvr~C~ 81 (198)
T PRK13739 41 ALMVLFVLWKDNTTP------GKLLVQEINFVRQTAP--------------AGQFPVRECR 81 (198)
T ss_pred HHHHHHHHHcCCCCH------HHHHHHHHHHHHccCC--------------cCceehhhcc
Confidence 455555665666666 3489888888887643 3889998883
No 93
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=28.38 E-value=40 Score=22.26 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=23.9
Q ss_pred cCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCC
Q 048279 93 NRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 93 ~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~ 151 (202)
++||||....++....+.|. +.. .+++++|++...+.|+.
T Consensus 6 ~~~~~W~v~~eg~~ra~~~~-----------~Tk--------~eAi~~Ar~~a~~~~~~ 45 (62)
T PF09954_consen 6 REDGGWAVKKEGAKRASKTF-----------DTK--------AEAIEAARELAKNQGGG 45 (62)
T ss_pred cCCCCceEEeCCCccccccc-----------CcH--------HHHHHHHHHHHHhCCCc
Confidence 68999998766543222111 111 23888888888877443
No 94
>PLN02703 beta-fructofuranosidase
Probab=26.16 E-value=1.8e+02 Score=28.46 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 048279 57 FLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGP 105 (202)
Q Consensus 57 ~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~ 105 (202)
++...++.++.-+|+ .+..+++++- .+++++-..|.+|++|.
T Consensus 506 ~LlWf~~aA~iK~Gr------~~lA~ral~~-ae~rl~~d~WpEYyDGk 547 (618)
T PLN02703 506 TLLWQLTVASIKMGR------PEIAEKAVEL-AERRISLDKWPEYYDTK 547 (618)
T ss_pred HHHHHHHHHHHHcCC------HHHHHHHHHH-HHHHhhhccChhhccCC
Confidence 445566667767776 3444554443 34456666899887763
No 95
>PLN02973 beta-fructofuranosidase
Probab=25.55 E-value=1.9e+02 Score=28.06 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=25.4
Q ss_pred cccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 048279 57 FLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGP 105 (202)
Q Consensus 57 ~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~ 105 (202)
++...++.++.-+|+ .+..+++++ +.+++++-..|.+|++|.
T Consensus 474 ~Llw~~~aA~iK~gr------~~lA~ral~-~ae~rl~~d~WpEyyDGk 515 (571)
T PLN02973 474 VLLWLLTAACIKTGR------PQIARRAIE-VAEARLHKDHWPEYYDGK 515 (571)
T ss_pred HHHHHHHHHHHHcCC------HHHHHHHHH-HHHHHhhhcCChhhcCCC
Confidence 444566667666776 344455444 334456666899887763
No 96
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=24.25 E-value=73 Score=29.89 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCCCCCcccC
Q 048279 19 TEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGD 51 (202)
Q Consensus 19 ~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~ 51 (202)
+.+.+.+.-..+.=.|.+||...|++.|.|.-.
T Consensus 370 nIT~st~~H~aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 370 NITQSTEQHSAAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred heeehhhHHHHHHHHHHHHHhhCCCCCCCCcch
Confidence 344556667788889999999999999999853
No 97
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=22.99 E-value=5.1e+02 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhccCCCCcccc
Q 048279 78 EEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 78 ~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
.+.++++++|+.+.+.++|.|...
T Consensus 187 ~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 187 APLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCc
Confidence 467889999999999999988543
No 98
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 2WCO_A 2X03_B 2WDA_A 1N7N_A 1W3Y_A 1LXK_A 1LOH_A 1OJO_A 1C82_A 1EGU_A ....
Probab=22.61 E-value=1.1e+02 Score=27.18 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHhccCCCC-----Cc-ccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDG-----HW-PGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQN 93 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG-----~W-~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~ 93 (202)
.+++.++|..|++|+.++.-..+ -| ..+.+.|-.+... +-++.. .++++.+.+.++.|...+.
T Consensus 82 n~~l~~~I~~aL~~~~~~~y~~~~~~~gNWW~~eIG~P~~l~~~----liLl~d---~l~~~~~~~~~~~i~~~~p 150 (324)
T PF08124_consen 82 NPALLNAILKALDWWYDNDYNPSKDEYGNWWDWEIGIPQALGNI----LILLYD---ELPPELIAKYTAAIDRFVP 150 (324)
T ss_dssp -HHHHHHHHHHHHHHHHHTSSTTS-TTSSHHHHHTHHHHHHHHH----HHHTGG---GSCHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccchHHHHHHH----HHHccc---ccCHHHHHHHHHHHHHhCC
Confidence 46799999999999998875444 33 3344433222222 222332 4567888888888776544
No 99
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=22.45 E-value=1.3e+02 Score=26.29 Aligned_cols=66 Identities=11% Similarity=0.207 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhcc--CCCCccccc--C----CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 78 EEHKKEMCRYVYNHQN--RDGGWGLHI--E----GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 78 ~~~~~~~~~~L~~~Q~--~DGgWg~~~--~----g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
.+..+++.+||.++-. ++|||.-.. + ...+++..+.+++||-......+. +..+.++++.++|.++
T Consensus 42 l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~-----~~~~~A~~~~~~l~~~ 115 (346)
T PF07221_consen 42 LELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDP-----EALELAEQTLEFLERR 115 (346)
T ss_dssp HHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-T-----THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCCh-----hHHHHHHHHHHHHHHH
Confidence 4577889999999875 669996433 2 234677777777777553222111 2233556677777765
No 100
>PF08769 Spo0A_C: Sporulation initiation factor Spo0A C terminal; InterPro: IPR014879 The response regulator Spo0A is comprised of a phophoacceptor domain and a transcription activation domain. This domain corresponds to the transcription activation domain and forms an alpha helical structure comprising of 6 alpha helices. The structure contains a helix-turn-helix and binds DNA [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005509 calcium ion binding, 0006355 regulation of transcription, DNA-dependent, 0042173 regulation of sporulation resulting in formation of a cellular spore, 0005737 cytoplasm; PDB: 1FC3_C 1LQ1_D.
Probab=20.75 E-value=1.4e+02 Score=22.24 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=22.9
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhccCCC
Q 048279 15 KVKDTEDVTEDIVTNTLRRALSYHSTLQAHD 45 (202)
Q Consensus 15 ~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~D 45 (202)
+|.+.=.+|...|+++|+.|++..+...+.|
T Consensus 45 ~IA~k~~TT~s~VERaIR~aI~~~w~~g~~~ 75 (106)
T PF08769_consen 45 DIAKKYGTTPSRVERAIRHAIEVAWTRGNPE 75 (106)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHHHHHCS-CC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4444556788999999999999998876554
Done!