Query 048279
Match_columns 202
No_of_seqs 165 out of 1291
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 1.7E-51 5.9E-56 395.4 14.7 166 24-200 70-235 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 1.7E-50 5.9E-55 382.8 14.4 167 23-201 7-173 (631)
3 2h6f_B Protein farnesyltransfe 99.6 2.5E-15 8.4E-20 137.0 8.2 106 31-149 174-281 (437)
4 2sqc_A Squalene-hopene cyclase 99.5 2.5E-14 8.5E-19 135.3 11.0 110 28-149 465-585 (631)
5 1n4q_B Geranyltransferase type 99.5 5.8E-15 2E-19 132.2 6.3 129 32-170 145-288 (377)
6 1w6k_A Lanosterol synthase; cy 99.5 2.8E-14 9.5E-19 137.2 11.0 113 26-149 555-681 (732)
7 3dss_B Geranylgeranyl transfer 99.5 2.4E-14 8.2E-19 126.2 8.8 127 31-170 116-257 (331)
8 2h6f_B Protein farnesyltransfe 99.5 8.4E-14 2.9E-18 126.9 8.6 132 29-170 121-267 (437)
9 3q7a_B Farnesyltransferase bet 99.4 2.6E-12 8.9E-17 118.8 10.4 115 24-150 162-306 (520)
10 1hzf_A Complement factor C4A; 99.3 1.8E-12 6E-17 115.1 8.6 123 24-148 86-226 (367)
11 3dss_B Geranylgeranyl transfer 99.3 2.1E-11 7.2E-16 107.3 11.9 133 30-178 163-311 (331)
12 1qqf_A Protein (complement C3D 99.2 5.8E-11 2E-15 101.0 12.3 131 24-164 33-185 (277)
13 2wy7_A Complement C3D fragment 99.2 9.8E-11 3.3E-15 101.3 11.1 131 24-164 49-201 (310)
14 4acq_A Alpha-2-macroglobulin; 99.0 1.1E-09 3.8E-14 112.0 12.0 114 26-148 980-1108(1451)
15 1n4q_B Geranyltransferase type 99.0 1E-09 3.5E-14 98.2 8.0 107 31-149 69-204 (377)
16 3q7a_B Farnesyltransferase bet 98.9 2E-09 7E-14 99.5 9.1 115 30-153 110-236 (520)
17 1qqf_A Protein (complement C3D 98.8 3.4E-08 1.2E-12 83.8 12.1 110 28-148 88-250 (277)
18 2wy7_A Complement C3D fragment 98.8 4.2E-08 1.4E-12 84.6 12.0 110 28-148 104-266 (310)
19 1gxm_A Pectate lyase; mechanis 98.7 2.2E-08 7.5E-13 88.0 8.5 120 25-149 93-250 (332)
20 1r76_A Pectate lyase; A-helica 98.7 8.2E-09 2.8E-13 92.9 5.0 119 25-149 171-327 (408)
21 2hr0_B Complement C3 alpha' ch 98.7 5.5E-08 1.9E-12 95.3 11.3 134 26-163 296-445 (915)
22 1hzf_A Complement factor C4A; 98.5 3.3E-07 1.1E-11 81.1 9.9 111 28-148 141-336 (367)
23 2pn5_A TEP1R, thioester-contai 98.5 4.1E-07 1.4E-11 92.0 10.4 131 24-162 867-1009(1325)
24 3dra_B Geranylgeranyltransfera 98.5 3.4E-07 1.2E-11 82.2 8.1 108 32-150 118-252 (390)
25 1r76_A Pectate lyase; A-helica 98.4 4.8E-07 1.6E-11 81.5 6.7 123 29-151 81-260 (408)
26 4fxk_B Complement C4-A alpha c 98.2 5.4E-06 1.9E-10 79.5 11.4 134 25-159 364-514 (767)
27 2bb6_A TCII, TC II, transcobal 98.2 2.9E-06 1E-10 76.6 8.3 121 33-167 156-284 (414)
28 2b39_A C3; thioester, immune d 98.2 1.5E-05 5.1E-10 82.5 13.6 135 25-163 1042-1192(1661)
29 1gxm_A Pectate lyase; mechanis 98.1 2.7E-06 9.2E-11 74.7 5.6 116 34-149 36-182 (332)
30 2hr0_B Complement C3 alpha' ch 98.0 1.3E-05 4.3E-10 78.6 8.7 111 28-149 349-512 (915)
31 3cu7_A Complement C5; Mg domai 97.9 5.4E-05 1.8E-09 78.4 10.6 128 25-163 1043-1192(1676)
32 2bb6_A TCII, TC II, transcobal 97.8 2.6E-05 9E-10 70.4 6.8 79 25-119 202-282 (414)
33 3prx_B Cobra venom factor; imm 97.8 3.6E-06 1.2E-10 87.1 0.0 122 25-148 1026-1162(1642)
34 4acq_A Alpha-2-macroglobulin; 97.7 3.1E-05 1E-09 79.4 6.3 127 28-165 1037-1246(1451)
35 2pmv_A Gastric intrinsic facto 97.7 0.0002 7E-09 64.3 10.6 117 32-167 133-260 (399)
36 2pmv_A Gastric intrinsic facto 97.7 4.4E-05 1.5E-09 68.6 5.8 83 24-122 178-261 (399)
37 3dra_B Geranylgeranyltransfera 97.6 0.00031 1E-08 63.0 10.6 113 31-155 193-341 (390)
38 3sdr_A Alpha-bisabolene syntha 97.5 3E-05 1E-09 75.4 2.8 109 25-149 50-163 (817)
39 2pn5_A TEP1R, thioester-contai 97.4 0.00036 1.2E-08 70.7 8.2 91 50-149 837-937 (1325)
40 3s9v_A Abietadiene synthase, c 97.3 0.00037 1.3E-08 67.5 6.7 58 81-148 76-135 (785)
41 3pya_A ENT-copalyl diphosphate 97.1 0.00034 1.2E-08 67.2 4.5 57 81-148 52-111 (727)
42 3p5p_A Taxadiene synthase; cla 97.0 0.00043 1.5E-08 66.9 4.4 59 81-149 55-115 (764)
43 4fxk_B Complement C4-A alpha c 95.8 0.011 3.8E-07 56.5 6.0 93 49-149 329-432 (767)
44 2b39_A C3; thioester, immune d 94.4 0.071 2.4E-06 55.3 7.4 62 80-147 1047-1108(1661)
45 3pya_A ENT-copalyl diphosphate 94.1 0.051 1.7E-06 52.2 5.3 55 32-91 53-111 (727)
46 3s9v_A Abietadiene synthase, c 94.1 0.078 2.7E-06 51.4 6.6 55 32-91 77-135 (785)
47 3sdr_A Alpha-bisabolene syntha 93.9 0.076 2.6E-06 51.6 6.0 55 32-91 104-162 (817)
48 3p5p_A Taxadiene synthase; cla 93.6 0.11 3.7E-06 50.3 6.4 56 32-92 56-115 (764)
49 3cu7_A Complement C5; Mg domai 93.1 0.11 3.8E-06 53.9 6.2 60 82-147 1050-1109(1676)
50 3pmm_A Putative cytoplasmic pr 90.7 2.6 8.8E-05 37.0 11.3 117 26-148 191-332 (382)
51 3prx_B Cobra venom factor; imm 90.3 0.053 1.8E-06 56.4 0.0 101 33-147 981-1093(1642)
52 1lf6_A Glucoamylase; (alpha/al 86.3 4.3 0.00015 38.3 10.3 109 27-149 294-429 (684)
53 3pmm_A Putative cytoplasmic pr 85.2 3.2 0.00011 36.4 8.3 75 24-99 258-340 (382)
54 1nc5_A Hypothetical protein YT 82.1 5.9 0.0002 34.2 8.7 72 24-96 236-322 (373)
55 3k11_A Putative glycosyl hydro 82.1 2.7 9.2E-05 38.0 6.6 75 23-97 288-370 (445)
56 1nc5_A Hypothetical protein YT 77.2 4.7 0.00016 34.9 6.4 63 80-148 242-314 (373)
57 1ulv_A Glucodextranase; GH fam 76.2 34 0.0012 33.9 12.8 113 25-149 280-421 (1020)
58 3e6u_A LANC-like protein 1; al 62.4 27 0.00092 30.5 8.0 28 23-50 248-275 (411)
59 3k11_A Putative glycosyl hydro 58.9 8.7 0.0003 34.6 4.2 117 26-148 225-364 (445)
60 1ulv_A Glucodextranase; GH fam 50.1 25 0.00086 34.9 6.2 89 30-121 349-450 (1020)
61 1lf6_A Glucoamylase; (alpha/al 46.5 21 0.00073 33.5 4.9 88 29-121 359-458 (684)
62 1wgn_A UBAP1, ubiquitin associ 40.6 33 0.0011 22.6 3.6 27 61-95 35-61 (63)
63 2gz6_A N-acetyl-D-glucosamine 40.3 48 0.0016 27.9 5.8 91 26-119 11-125 (388)
64 2gz6_A N-acetyl-D-glucosamine 37.7 83 0.0028 26.4 7.0 71 25-98 73-158 (388)
65 4ae4_A Ubiquitin-associated pr 37.6 17 0.00057 26.8 2.1 84 60-151 23-117 (118)
66 2ekk_A UBA domain from E3 ubiq 34.4 43 0.0015 20.0 3.4 26 109-148 21-46 (47)
67 3gt5_A N-acetylglucosamine 2-e 33.9 1.1E+02 0.0037 26.3 7.2 93 25-120 9-124 (402)
68 1veg_A NEDD8 ultimate buster-1 33.3 41 0.0014 23.2 3.4 29 109-150 41-69 (83)
69 1whc_A RSGI RUH-027, UBA/UBX 3 29.9 53 0.0018 21.2 3.4 31 109-151 21-51 (64)
70 2dna_A Unnamed protein product 29.6 32 0.0011 22.8 2.3 16 31-46 48-63 (67)
71 2cpw_A CBL-interacting protein 29.0 77 0.0026 20.4 4.1 27 61-94 35-61 (64)
72 2knz_A Ubiquilin-4; cytoplasm, 28.9 56 0.0019 20.2 3.3 27 110-149 25-51 (53)
73 1rk8_C PYM protein, within the 28.6 5 0.00017 26.1 -1.8 13 87-99 12-24 (58)
74 2p0v_A Hypothetical protein BT 28.2 70 0.0024 29.1 5.0 123 17-148 197-378 (489)
75 2okx_A Rhamnosidase B; alpha b 27.5 1.2E+02 0.0041 29.5 6.9 68 30-98 596-674 (956)
76 2ahf_A Unsaturated glucuronyl 27.3 2.6E+02 0.0089 24.1 8.5 43 80-122 245-293 (377)
77 2g0d_A Nisin biosynthesis prot 27.3 88 0.003 26.7 5.4 129 25-158 153-324 (409)
78 1c6r_A Cytochrome C6; electron 26.4 43 0.0015 21.6 2.6 21 75-95 67-87 (89)
79 1f1c_A Cytochrome C549; dimeri 26.1 21 0.00072 25.1 1.0 25 75-99 104-129 (129)
80 2crn_A Ubash3A protein; compac 26.0 90 0.0031 20.1 4.0 29 59-94 23-51 (64)
81 1wiv_A UBP14, ubiquitin-specif 23.9 81 0.0028 20.9 3.5 29 109-150 41-69 (73)
82 2zzr_A Unsaturated glucuronyl 22.9 1.4E+02 0.0047 26.2 5.8 38 4-41 5-42 (397)
83 2dah_A Ubiquilin-3; UBA domain 22.7 89 0.0031 19.4 3.4 25 113-150 26-50 (54)
84 1e29_A Cytochrome C549; electr 22.4 41 0.0014 24.5 2.0 25 75-99 106-130 (135)
85 1v7w_A Chitobiose phosphorylas 22.2 98 0.0034 29.1 5.0 42 80-121 465-515 (807)
86 2dak_A Ubiquitin carboxyl-term 21.6 62 0.0021 20.6 2.5 27 110-149 22-48 (63)
87 2l3n_A DNA-binding protein RAP 20.9 2.1E+02 0.0071 19.6 6.2 60 19-103 6-65 (104)
88 1fc3_A SPO0A; response regulat 20.1 98 0.0034 22.6 3.6 62 17-91 55-116 (120)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=1.7e-51 Score=395.40 Aligned_cols=166 Identities=40% Similarity=0.706 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIE 103 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~ 103 (202)
.+++.++|+++++||+++|.+||||++++++++|+++++|+++|++|. .++++.++++++||+++||+|||||+|++
T Consensus 70 ~~~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~ 146 (732)
T 1w6k_A 70 AHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIE 146 (732)
T ss_dssp CCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBTT
T ss_pred cccHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhcCCCCCccCCcC
Confidence 456999999999999999999999999999999999999999999986 55667899999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhcc
Q 048279 104 GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRYG 183 (202)
Q Consensus 104 g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~ll 183 (202)
++|++++|++||+|||++|+++++| +|+|||+||+++||++++|+|||||||++|+|+|+++|+||||||||
T Consensus 147 ~~s~~~~T~~~Y~aLrl~G~~~~~~--------~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~ll 218 (732)
T 1w6k_A 147 DKSTVFGTALNYVSLRILGVGPDDP--------DLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLF 218 (732)
T ss_dssp SCCBHHHHHHHHHHHHHTTCCTTSH--------HHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGS
T ss_pred CCccHHHHHHHHHHHHHcCCCCCcH--------HHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHc
Confidence 9999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred cCccccCcccchhhhcc
Q 048279 184 FFLIFYHSIQVSAHLCI 200 (202)
Q Consensus 184 P~~~p~~~~~~s~~~~~ 200 (202)
|.|+||||++++||+|.
T Consensus 219 P~~~p~~~~~~~~~~R~ 235 (732)
T 1w6k_A 219 PDWAPAHPSTLWCHCRQ 235 (732)
T ss_dssp CTTSTTCGGGSCHHHHH
T ss_pred cCcCCCCHHHHHHHHHH
Confidence 99999999999999995
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=1.7e-50 Score=382.76 Aligned_cols=167 Identities=19% Similarity=0.351 Sum_probs=160.3
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 048279 23 TEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI 102 (202)
Q Consensus 23 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~ 102 (202)
+.++++++|+|+++||+++|.+||||++++++++|+++++|+++|++|..+ ++.++++++||+++||+|||||+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~q~~dG~w~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~yl~~~Q~~dGgW~~~~ 82 (631)
T 2sqc_A 7 EAPAYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RDRMEKIRRYLLHEQREDGTWALYP 82 (631)
T ss_dssp -CCHHHHHHHHHHHHHHHHCCTTSCCCCCEECCTHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHHSCTTSCCCSST
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCcccccCCCcchhhHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCCccCCC
Confidence 345799999999999999999999999999999999999999999999744 4789999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHHhccCccCCCCCCCCCchhc
Q 048279 103 EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLSVLYLEHLNGLATIPFPLRY 182 (202)
Q Consensus 103 ~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~El~l 182 (202)
+++|++++|++||+|||++|+++++| +|+|||+||+++||++++++|||+|||++|+|+|+++|+||||+||
T Consensus 83 ~~~~~~~~t~~~y~aLrllg~~~~~~--------~~~~ar~~i~~~GG~~~~~~~~k~~La~~G~~~w~~~~~~p~e~~l 154 (631)
T 2sqc_A 83 GGPPDLDTTIEAYVALKYIGMSRDEE--------PMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMF 154 (631)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCCTTSH--------HHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGG
T ss_pred CCCcchHHHHHHHHHHHhcCCCCChH--------HHHHHHHHHHHcCCcccCCHHHHHHHHHcCCCCcccCCCCCHHHHH
Confidence 99999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred ccCccccCcccchhhhccc
Q 048279 183 GFFLIFYHSIQVSAHLCIF 201 (202)
Q Consensus 183 lP~~~p~~~~~~s~~~~~~ 201 (202)
||.|+||||++++||+|..
T Consensus 155 lp~~~p~~~~~~~~~~R~~ 173 (631)
T 2sqc_A 155 LGKRMPLNIYEFGSWARAT 173 (631)
T ss_dssp SCTTSTTCGGGSCHHHHHH
T ss_pred cccccccCHhHhHHHHHHH
Confidence 9999999999999999973
No 3
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.58 E-value=2.5e-15 Score=136.99 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=88.0
Q ss_pred HHHHHHHHHhccCCCCCcccC-CC-CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGD-YG-GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~-~~-~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
++++++||.+.|++||+|.+. ++ +++..+-..+.++..+|..+ .+.++++++||+++||+|||||..++.+|+.
T Consensus 174 i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~----~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~ 249 (437)
T 2h6f_B 174 REKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT----PDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249 (437)
T ss_dssp HHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCC----TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCH
T ss_pred HHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCC----hHHHHHHHHHHHHccCCCCCcCCCCCCCCCc
Confidence 789999999999999999985 43 34444555566778888632 4568899999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
..|.+|+.||.++|..... .+.|+++||++++
T Consensus 250 ~~T~~Al~aL~~lg~~~~~---------~~~rl~~wL~~rQ 281 (437)
T 2h6f_B 250 GYTFCGLAALVILKRERSL---------NLKSLLQWVTSRQ 281 (437)
T ss_dssp HHHHHHHHHHHHHTCGGGS---------CHHHHHHHHHHTB
T ss_pred cHHHHHHHHHHHcCCCCcc---------cHHHHHHHHHhcC
Confidence 9999999999999975333 4899999999854
No 4
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.53 E-value=2.5e-14 Score=135.31 Aligned_cols=110 Identities=29% Similarity=0.441 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCCCCc-cccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc----
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYGGPM-FLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI---- 102 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~-~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~---- 102 (202)
..+++||++||.+.|++||+|.+.++.+. +.|+..+.+|..+|.. ...+.++++++||+++|++||||+...
T Consensus 465 ~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~---~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~ 541 (631)
T 2sqc_A 465 WKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID---TREPYIQKALDWVEQHQNPDGGWGEDCRSYE 541 (631)
T ss_dssp SHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCC---TTSHHHHHHHHHHHHTCCTTSCCCCCGGGGT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHhCcCCCCcCCcccccc
Confidence 46789999999999999999998876553 4455556677777752 234678999999999999999998632
Q ss_pred ------CCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 103 ------EGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 103 ------~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
.+.++++.|++|+.||..+|... .+ .++|+++||.+++
T Consensus 542 ~~~~~~~~~s~v~~Ta~ALlaL~~ag~~~-~~--------~i~rav~wL~~~Q 585 (631)
T 2sqc_A 542 DPAYAGKGASTPSQTAWALMALIAGGRAE-SE--------AARRGVQYLVETQ 585 (631)
T ss_dssp CGGGTTCSSCCHHHHHHHHHHHHHTTCSS-SH--------HHHHHHHHHHHHC
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCCC-hH--------HHHHHHHHHHhcc
Confidence 35789999999999999998763 33 7999999999865
No 5
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.53 E-value=5.8e-15 Score=132.25 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=98.6
Q ss_pred HHHHHHHHhccCCCCCcccC--CC-CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 32 RRALSYHSTLQAHDGHWPGD--YG-GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~--~~-~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
+++++||.+.|++||+|.+. ++ .++..+-..+.+++.+|..+ .+.++++++||+++||.|||||..++.+|+.
T Consensus 145 ~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~----~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~ 220 (377)
T 1n4q_B 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS----GMDMKKAISYIRRSMSYDNGLAQGAGLESHG 220 (377)
T ss_dssp HHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGG----GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCH
T ss_pred HHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHhcCCCCCCCCCCCCCCch
Confidence 78999999999999999995 54 33555555666778888632 4568999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCC-CCCCCCchhHHHHHHHHHHHcC--CCcchh---------hHHHHHHHhccCccC
Q 048279 109 FGSVLNYVTLRLLGEGAND-GRGANDGRGAMERGRSWILEHG--GATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~-p~~~~~~~~~l~ra~~wI~~~G--G~~~~~---------~~~k~~Lal~G~~~W 170 (202)
..|..|+++|.++|..... | ...+.|+++||.+++ |..+-+ .|.=--|.++|.++|
T Consensus 221 g~T~cAlaaL~llg~~~~~~~------~~~~~rli~wL~~rQ~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~ 288 (377)
T 1n4q_B 221 GSTFCGIASLCLMGKLEEVFS------EKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQY 288 (377)
T ss_dssp HHHHHHHHHHHHHTCHHHHSC------HHHHHHHHHHHHTTBSSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGG
T ss_pred hHHHHHHHHHHHhcCcccccc------hhhHHHHHHHHHhcCCCCcCCCCCcchhHHHHHHHHHHHHHhCCccc
Confidence 9999999999999853321 1 115899999999864 443322 444455667776665
No 6
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.53 E-value=2.8e-14 Score=137.21 Aligned_cols=113 Identities=22% Similarity=0.362 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccCCCCCc-cccHHHHHHHHHhCCCCCCCCH---HHHHHHHHHHHhhccCCCCcccc
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGDYGGPM-FLMPGLVITLSITGALNAVLSE---EHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~-~~ta~~v~~l~~~g~~~~~~~~---~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
+...+|++|++||.+.|++||+|.+.++.+. +.|+..+.+|..+|... .+. +.++++++||+++|++||||+..
T Consensus 555 ~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~--~~~~~~~~i~rav~~Lls~Q~~DGGWge~ 632 (732)
T 1w6k_A 555 EIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTY--RDGTACAEVSRACDFLLSRQMADGGWGED 632 (732)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCC--BTTBCCHHHHHHHHHHHTTCCTTSCCCBC
T ss_pred hhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcc--cccchhHHHHHHHHHHHHhcccCCCCCCC
Confidence 4567899999999999999999999886553 34555566788888632 112 57899999999999999999963
Q ss_pred ----------cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 102 ----------IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 102 ----------~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
.+..|++++|++|++||+.+|.. +.+ .+.|+++||.++.
T Consensus 633 ~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~-~~~--------~i~r~v~wL~~~Q 681 (732)
T 1w6k_A 633 FESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP-DIE--------AQERGVRCLLEKQ 681 (732)
T ss_dssp THHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS-CHH--------HHHHHHHHHHHHC
T ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHcCCC-ChH--------HHHHHHHHHHHhc
Confidence 24568999999999999999864 222 7999999999875
No 7
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.52 E-value=2.4e-14 Score=126.15 Aligned_cols=127 Identities=21% Similarity=0.259 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccCCCCCcccC-CC-CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc
Q 048279 31 LRRALSYHSTLQAHDGHWPGD-YG-GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM 108 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~-~~-~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v 108 (202)
++++++||.+.|++||+|.+. ++ ..+..|...+.++..+|..+ .+.++++++||+++|++||||+..++.+++.
T Consensus 116 ~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~----~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~ 191 (331)
T 3dss_B 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLD----AINVEKAIEFVLSCMNFDGGFGCRPGSESHA 191 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGG----GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCH
T ss_pred HHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcH
Confidence 689999999999999999986 32 23444555667788888643 3458899999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC----CCcchh---------hHHHHHHHhccCccC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG----GATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G----G~~~~~---------~~~k~~Lal~G~~~W 170 (202)
..|..|+.+|.++|..... .++|+++||.+++ |..+-+ .|.=--|+++|..+|
T Consensus 192 ~~T~~al~aL~llg~~~~~---------~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~ 257 (331)
T 3dss_B 192 GQIYCCTGFLAITSQLHQV---------NSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257 (331)
T ss_dssp HHHHHHHHHHHHTTCGGGS---------CHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHhccccchh---------hHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcch
Confidence 9999999999999864322 4899999999864 554432 234455667776554
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.47 E-value=8.4e-14 Score=126.87 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhccCCCCCccc-CCCC-CccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCC
Q 048279 29 NTLRRALSYHSTLQAHDGHWPG-DYGG-PMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPS 106 (202)
Q Consensus 29 ~ai~ra~~~L~~~Q~~DG~W~g-~~~~-~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s 106 (202)
..++++++||+++|++||+|.+ ++.. .+..|...+.+|..+|... ..+...++++++||.+.|++||||+...++.+
T Consensus 121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~-~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~ 199 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE-AYDIINREKLLQYLYSLKQPDGSFLMHVGGEV 199 (437)
T ss_dssp HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHH-HHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCB
T ss_pred HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcc-cccchHHHHHHHHHHHhCCCCCCeeecCCCCc
Confidence 3578999999999999999998 4533 3445666677888888521 01122378999999999999999998888999
Q ss_pred cccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcchh---------hHHHHHHHhccCccC
Q 048279 107 TMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATALT---------SWGKMWLSVLYLEHL 170 (202)
Q Consensus 107 ~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~~---------~~~k~~Lal~G~~~W 170 (202)
++..|-.|..+|.++|.. +.+ .++|+.+||++. ||....+ .|.=.-|+++|..+|
T Consensus 200 d~~~ty~A~~~L~llg~~-~~~--------~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~ 267 (437)
T 2h6f_B 200 DVRSAYCAASVASLTNII-TPD--------LFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERS 267 (437)
T ss_dssp SHHHHHHHHHHHHHTTCC-CTT--------TTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGG
T ss_pred cchhHHHHHHHHHHhCCC-ChH--------HHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCc
Confidence 999999999999999974 333 689999999986 4543322 223344556666655
No 9
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.35 E-value=2.6e-12 Score=118.77 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccC-CC-CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc-
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGD-YG-GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL- 100 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~-~~-~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~- 100 (202)
.+.++..++++++||.+.|++||+|.+. ++ .++..+-..+.+++.+|. .+++.++++++||+++||.|||||.
T Consensus 162 ~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~----~~~~~v~kav~fI~scQn~DGGfGe~ 237 (520)
T 3q7a_B 162 WKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDI----ITPELLHNVDKFVSACQTYEGGFACA 237 (520)
T ss_dssp HHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTC----CCHHHHTTHHHHHHTTBCTTSSBCSC
T ss_pred hhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHhcCCCCCccCc
Confidence 3456667889999999999999999996 43 234444555667788886 3477899999999999999999999
Q ss_pred ----------------------ccCCCCcccchHHHHHHHHHcCCCC-----CCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 101 ----------------------HIEGPSTMFGSVLNYVTLRLLGEGA-----NDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 101 ----------------------~~~g~s~v~~T~~ay~AL~l~G~~~-----~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
.++++++.-.|--|+.+|.++|.-+ +.. -+.+-.+||..+++
T Consensus 238 s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~--------d~~~l~~WL~~RQ~ 306 (520)
T 3q7a_B 238 SFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSI--------DANAALRWTVLQQG 306 (520)
T ss_dssp EEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCC--------CHHHHHHHHHHTBC
T ss_pred cccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhcccccccccccc--------CHHHHHHHHHHhCC
Confidence 5677888878888999999998522 121 47899999998764
No 10
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.34 E-value=1.8e-12 Score=115.08 Aligned_cols=123 Identities=14% Similarity=0.178 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCC---CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDY---GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGL 100 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~---~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~ 100 (202)
++++.+.|++|++++++.|++||+|. -| .++.++|+..+-+|..++.. ..++++.++++++||.++|++||+|+.
T Consensus 86 ~~~~~~~i~~g~~~ll~~Q~~dGgf~-~~~~~~~~~~lTa~v~~~l~~a~~~-~~v~~~~i~~a~~~L~~~Q~~dG~~~~ 163 (367)
T 1hzf_A 86 KDHAVDLIQKGYMRIQQFRKADGSYA-AWLSRDSSTWLTAFVLKVLSLAQEQ-VGGSPEKLQETSNWLLSQQQADGSFQD 163 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBC-SSTTSCCCHHHHHHHHHHHHHHGGG-TCCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCee-ccCCCCCcHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhhccCCCccc
Confidence 45788899999999999999999994 33 35667777766666666643 346678999999999999999999986
Q ss_pred ccC------------CCCcccchHHHHHHHHHcCCCCCCCCCC---CCchhHHHHHHHHHHHc
Q 048279 101 HIE------------GPSTMFGSVLNYVTLRLLGEGANDGRGA---NDGRGAMERGRSWILEH 148 (202)
Q Consensus 101 ~~~------------g~s~v~~T~~ay~AL~l~G~~~~~p~~~---~~~~~~l~ra~~wI~~~ 148 (202)
.-. ++++++.|+++++||...|....+...+ ......++||.+||.++
T Consensus 164 ~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 164 PCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp SSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 311 2456889999999998776421110000 00112789999999876
No 11
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.29 E-value=2.1e-11 Score=107.31 Aligned_cols=133 Identities=20% Similarity=0.182 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhccCCCCCcccCCC--CCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCc
Q 048279 30 TLRRALSYHSTLQAHDGHWPGDYG--GPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPST 107 (202)
Q Consensus 30 ai~ra~~~L~~~Q~~DG~W~g~~~--~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~ 107 (202)
.++++++||.+.|++||.|.+..+ +....|...+.+|.++|..+ ...++++++||.++|++||||+..++...+
T Consensus 163 ~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~----~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D 238 (331)
T 3dss_B 163 NVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLH----QVNSDLLGWWLCERQLPSGGLNGRPEKLPD 238 (331)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGG----GSCHHHHHHHHHTTBCTTSCBCSSTTCCCC
T ss_pred HHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHhCCCCCCcCCCCCCCCc
Confidence 478999999999999999998653 33445666777888888743 223788999999999999999999888889
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc-----CCCcchh----h-----HHHHHHHhccCccCCCC
Q 048279 108 MFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH-----GGATALT----S-----WGKMWLSVLYLEHLNGL 173 (202)
Q Consensus 108 v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~-----GG~~~~~----~-----~~k~~Lal~G~~~W~~~ 173 (202)
+.-|.++..+|.++|..... ..+++++||++. ||....| . |+-.-|+++|. +++
T Consensus 239 ~cys~w~l~~L~llg~~~~~---------~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~---~~l 306 (331)
T 3dss_B 239 VCYSWWVLASLKIIGRLHWI---------DREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE---EQI 306 (331)
T ss_dssp HHHHHHHHHHHHHTTCGGGS---------CHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC---TTS
T ss_pred chhHHHHHHHHHHcCCcchh---------hHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC---CCC
Confidence 99999999999999864322 479999999973 7766544 2 33344555553 345
Q ss_pred CCCCC
Q 048279 174 ATIPF 178 (202)
Q Consensus 174 ~~lP~ 178 (202)
.++-|
T Consensus 307 ~~~~p 311 (331)
T 3dss_B 307 KPVSP 311 (331)
T ss_dssp CCBCT
T ss_pred CCCCc
Confidence 55544
No 12
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.25 E-value=5.8e-11 Score=100.98 Aligned_cols=131 Identities=7% Similarity=0.062 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccC--CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-hccCCCCccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGD--YGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN-HQNRDGGWGL 100 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~--~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~-~Q~~DGgWg~ 100 (202)
.+++.+.|++|.+++++.|++||+|..- ..++..+|+..+-.+..+.... .++++.++++++||.+ +|++||+|..
T Consensus 33 ~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~-~v~~~~i~~a~~~L~~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI-AIDSQVLCGAVKWLILEKQKPDGVFQE 111 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhccCCCCCccC
Confidence 4578889999999999999999999642 2467778888777777776533 4677899999999995 9999999975
Q ss_pred ccC--------C-----CCcccchHHHHHHHHHcC------CCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHH
Q 048279 101 HIE--------G-----PSTMFGSVLNYVTLRLLG------EGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMW 161 (202)
Q Consensus 101 ~~~--------g-----~s~v~~T~~ay~AL~l~G------~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~ 161 (202)
.-. + +++++.|+.++++|...| .+..++ .++||.+||.++-.- ....|++..
T Consensus 112 ~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~--------~i~~A~~~L~~~~~~-~~~~y~~a~ 182 (277)
T 1qqf_A 112 DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPG--------SINKAGEYLEASYLN-LQRPYTVAI 182 (277)
T ss_dssp SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHH--------HHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHH--------HHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 321 0 234677899999998773 444444 899999999987321 124577755
Q ss_pred HHh
Q 048279 162 LSV 164 (202)
Q Consensus 162 Lal 164 (202)
+|.
T Consensus 183 ~ay 185 (277)
T 1qqf_A 183 AGY 185 (277)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 13
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.19 E-value=9.8e-11 Score=101.26 Aligned_cols=131 Identities=9% Similarity=0.099 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccC--CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-hccCCCCccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGD--YGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN-HQNRDGGWGL 100 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~--~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~-~Q~~DGgWg~ 100 (202)
.+++.+.|++|++++++.|++||+|..- ..++..+|+..+-.+..+.... .++++.++++++||.+ +|++||+|..
T Consensus 49 ~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~-~v~~~~i~~a~~~L~~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 49 RQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI-AIDSQVLCGAVKWLILEKQKPDGVFQE 127 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCCCcccc
Confidence 4568889999999999999999999642 2467778888777777776533 4677899999999995 9999999975
Q ss_pred ccC--------C-----CCcccchHHHHHHHHHcC------CCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHH
Q 048279 101 HIE--------G-----PSTMFGSVLNYVTLRLLG------EGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMW 161 (202)
Q Consensus 101 ~~~--------g-----~s~v~~T~~ay~AL~l~G------~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~ 161 (202)
.-. + +++++.|+.++++|...| .+..++ .++||.+||.++-.- ....|++-.
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~--------~i~~A~~~L~~~~~~-~~~~y~~a~ 198 (310)
T 2wy7_A 128 DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPG--------SITKAGDFLEANYMN-LQRSYTVAI 198 (310)
T ss_dssp SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHH--------HHHHHHHHHHHHGGG-CCCHHHHHH
T ss_pred CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHH--------HHHHHHHHHHHHhhc-cCCHHHHHH
Confidence 321 0 234677999999998874 344444 899999999987321 124566654
Q ss_pred HHh
Q 048279 162 LSV 164 (202)
Q Consensus 162 Lal 164 (202)
+|.
T Consensus 199 ~ay 201 (310)
T 2wy7_A 199 AGY 201 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 14
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.03 E-value=1.1e-09 Score=111.97 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccC------CCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcc
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPGD------YGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWG 99 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g~------~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg 99 (202)
++..-|++|.+++++.|++||+|..- ..++.++|+..+-.|..+... ..++++.++++++||.++|++||+|.
T Consensus 980 ~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~-~~v~~~~l~~a~~wL~~~Q~~dG~f~ 1058 (1451)
T 4acq_A 980 KAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAY-IFIDEAHITQALIWLSQRQKDNGCFR 1058 (1451)
T ss_dssp HHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTT-SCCCTHHHHHHHHHHHHTEETTTEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhh-cccCHHHHHHHHHHHHhhcccCCccc
Confidence 45566899999999999999998743 346788888777666666543 24667899999999999999999997
Q ss_pred ccc--------CC-CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 100 LHI--------EG-PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 100 ~~~--------~g-~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
..- +| .++++.|+.+++||...|.+..++ .++||.+||.++
T Consensus 1059 ~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~--------~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1059 SSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHP--------VVRNALFCLESA 1108 (1451)
T ss_dssp CCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCH--------HHHHHHHHHHHH
T ss_pred ccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCH--------HHHHHHHHHHHh
Confidence 421 12 356889999999999999877776 899999999977
No 15
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.97 E-value=1e-09 Score=98.18 Aligned_cols=107 Identities=17% Similarity=0.068 Sum_probs=83.1
Q ss_pred HHHHHHHHHhccC---------CCCCcccCCC-------------------CCccccHHHHHHHHHhCCCCCCCCHHHHH
Q 048279 31 LRRALSYHSTLQA---------HDGHWPGDYG-------------------GPMFLMPGLVITLSITGALNAVLSEEHKK 82 (202)
Q Consensus 31 i~ra~~~L~~~Q~---------~DG~W~g~~~-------------------~~~~~ta~~v~~l~~~g~~~~~~~~~~~~ 82 (202)
.+++++|++++|. +||.|.+... ..+..|...+.+|.++|.. .+...++
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~---~~~id~~ 145 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD---LSRVDKE 145 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC---STTSCHH
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc---cchhhHH
Confidence 6799999999999 6899987421 2333455556677777742 2222357
Q ss_pred HHHHHHHhhccCCCCcccc-cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 83 EMCRYVYNHQNRDGGWGLH-IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 83 ~~~~~L~~~Q~~DGgWg~~-~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
++++||.+.|++||||... .+|+.++..|--|..+|.++|. .+++ .++|+.+||++..
T Consensus 146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~-~~~~--------~v~ka~~fL~scQ 204 (377)
T 1n4q_B 146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN-WSGM--------DMKKAISYIRRSM 204 (377)
T ss_dssp HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC-GGGS--------CHHHHHHHHHHTB
T ss_pred HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC-CChH--------HHHHHHHHHHHhc
Confidence 8999999999999999875 6788999999999999999997 3344 6999999999974
No 16
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.94 E-value=2e-09 Score=99.51 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhccCCCCCcccCC----CCCccccHHHHHHHHHhCCCCC--CCCHHH--HHHHHHHHHhhccCCCCcccc
Q 048279 30 TLRRALSYHSTLQAHDGHWPGDY----GGPMFLMPGLVITLSITGALNA--VLSEEH--KKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 30 ai~ra~~~L~~~Q~~DG~W~g~~----~~~~~~ta~~v~~l~~~g~~~~--~~~~~~--~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
-.+++++|+++.|++||.|.+.- ...+..|...|.+|.++|.... ..+.-. ++++++||.+.|++||||...
T Consensus 110 ~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~ 189 (520)
T 3q7a_B 110 TKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVC 189 (520)
T ss_dssp HHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecC
Confidence 36678999999999999998743 3344556667778888886320 122223 678999999999999999987
Q ss_pred cCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc----CCCcc
Q 048279 102 IEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH----GGATA 153 (202)
Q Consensus 102 ~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~----GG~~~ 153 (202)
.+|+.++..|-.|+.+|.++|.. +.+ .++|+.+||++. ||...
T Consensus 190 ~wGe~Dir~TY~Al~~L~lLg~~-~~~--------~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 190 EGGEVDVRGTYCLLVVATLLDII-TPE--------LLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTCC-CHH--------HHTTHHHHHHTTBCTTSSBCS
T ss_pred CCCCchHHHHHHHHHHHHHcCCC-ChH--------HHHHHHHHHHHhcCCCCCccC
Confidence 78899999999999999999973 332 799999999987 56554
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.83 E-value=3.4e-08 Score=83.78 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHh-ccCCCCCcccCCCCC---------------ccccHHHHHHHHHhCCC---CCCCCHHHHHHHHHHH
Q 048279 28 TNTLRRALSYHST-LQAHDGHWPGDYGGP---------------MFLMPGLVITLSITGAL---NAVLSEEHKKEMCRYV 88 (202)
Q Consensus 28 ~~ai~ra~~~L~~-~Q~~DG~W~g~~~~~---------------~~~ta~~v~~l~~~g~~---~~~~~~~~~~~~~~~L 88 (202)
...|+++++||.+ .|++||+|.+.+... ..+|+..+++|...|.. ......+.++++++||
T Consensus 88 ~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 167 (277)
T 1qqf_A 88 SQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYL 167 (277)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHH
Confidence 3688999999996 999999998865321 33455556666555320 0012246789999999
Q ss_pred HhhccC---------------------------------CCCcccccCC-CCcccchHHHHHHHHHcCCCCCCCCCCCCc
Q 048279 89 YNHQNR---------------------------------DGGWGLHIEG-PSTMFGSVLNYVTLRLLGEGANDGRGANDG 134 (202)
Q Consensus 89 ~~~Q~~---------------------------------DGgWg~~~~g-~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~ 134 (202)
.++|++ ||+|...+++ .+++.+|++++.||...+.. +
T Consensus 168 ~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~------- 238 (277)
T 1qqf_A 168 EASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF--D------- 238 (277)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT--T-------
T ss_pred HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh--h-------
Confidence 999875 4433222221 12788999999999888642 2
Q ss_pred hhHHHHHHHHHHHc
Q 048279 135 RGAMERGRSWILEH 148 (202)
Q Consensus 135 ~~~l~ra~~wI~~~ 148 (202)
.+.+..+||.++
T Consensus 239 --~~~~~v~wL~~q 250 (277)
T 1qqf_A 239 --SVPPVVRWLNDE 250 (277)
T ss_dssp --SHHHHHHHHHHC
T ss_pred --hHHHHHHHHHHc
Confidence 589999999987
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.80 E-value=4.2e-08 Score=84.65 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHh-ccCCCCCcccCCCCC---------------ccccHHHHHHHHHhCCC---CCCCCHHHHHHHHHHH
Q 048279 28 TNTLRRALSYHST-LQAHDGHWPGDYGGP---------------MFLMPGLVITLSITGAL---NAVLSEEHKKEMCRYV 88 (202)
Q Consensus 28 ~~ai~ra~~~L~~-~Q~~DG~W~g~~~~~---------------~~~ta~~v~~l~~~g~~---~~~~~~~~~~~~~~~L 88 (202)
...|+++++||.+ .|++||+|.+.+... ..+|+..+++|...|.. ......+.++++++||
T Consensus 104 ~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 183 (310)
T 2wy7_A 104 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 183 (310)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHH
Confidence 3688999999996 999999998866321 33455556666555321 0012246789999999
Q ss_pred HhhccC---------------------------------CCCcccccCCC-CcccchHHHHHHHHHcCCCCCCCCCCCCc
Q 048279 89 YNHQNR---------------------------------DGGWGLHIEGP-STMFGSVLNYVTLRLLGEGANDGRGANDG 134 (202)
Q Consensus 89 ~~~Q~~---------------------------------DGgWg~~~~g~-s~v~~T~~ay~AL~l~G~~~~~p~~~~~~ 134 (202)
.++|++ ||+|...+++. .++.+|++|+.||...+.. +
T Consensus 184 ~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~--~------- 254 (310)
T 2wy7_A 184 EANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--D------- 254 (310)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--T-------
T ss_pred HHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh--h-------
Confidence 999874 33322111111 2788999999999988642 2
Q ss_pred hhHHHHHHHHHHHc
Q 048279 135 RGAMERGRSWILEH 148 (202)
Q Consensus 135 ~~~l~ra~~wI~~~ 148 (202)
.+.++.+||.++
T Consensus 255 --~~~~~v~wL~~q 266 (310)
T 2wy7_A 255 --FVPPVVRWLNEQ 266 (310)
T ss_dssp --THHHHHHHHHHT
T ss_pred --hHHHHHHHHHHc
Confidence 589999999987
No 19
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.75 E-value=2.2e-08 Score=87.96 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCCCC--C-----cc---ccHHHHHHHHHhCCCCCCC------------CHHHHH
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGG--P-----MF---LMPGLVITLSITGALNAVL------------SEEHKK 82 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~--~-----~~---~ta~~v~~l~~~g~~~~~~------------~~~~~~ 82 (202)
+...+|++||++||++.|.+||.|+..+.- . .| .|+..+.+|..++...... ..+.++
T Consensus 93 ~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~ 172 (332)
T 1gxm_A 93 TKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVT 172 (332)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHH
Confidence 467899999999999999999999864321 1 11 3555555555554211111 235788
Q ss_pred HHHHHHHhhccCCCCccc-----ccCCCC-----------cccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHH
Q 048279 83 EMCRYVYNHQNRDGGWGL-----HIEGPS-----------TMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWIL 146 (202)
Q Consensus 83 ~~~~~L~~~Q~~DGgWg~-----~~~g~s-----------~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~ 146 (202)
|+++||++.|.+||||-. |..+.. .+++..-+-+..-+++.+. +| ++..+|++|++||.
T Consensus 173 Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~-~~----~v~~aI~~Av~WL~ 247 (332)
T 1gxm_A 173 KGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ-TA----EIEQAVRAGVAWFN 247 (332)
T ss_dssp HHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC-CH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC-CH----HHHHHHHHHHHHHH
Confidence 999999999999998753 222211 2333322222233445543 32 34447999999999
Q ss_pred HcC
Q 048279 147 EHG 149 (202)
Q Consensus 147 ~~G 149 (202)
++.
T Consensus 248 ~~q 250 (332)
T 1gxm_A 248 SPR 250 (332)
T ss_dssp CTT
T ss_pred hcc
Confidence 875
No 20
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.72 E-value=8.2e-09 Score=92.94 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCCCCC-------cc---ccHHHHHHHHHhCCCCC---C-------CCHHHHHHH
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGGP-------MF---LMPGLVITLSITGALNA---V-------LSEEHKKEM 84 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~-------~~---~ta~~v~~l~~~g~~~~---~-------~~~~~~~~~ 84 (202)
+...+|++||++||++.|.+||.|+..+.-+ .| .|+..+.+|..++.... . ...+.++|+
T Consensus 171 ~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rg 250 (408)
T 1r76_A 171 APYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAA 250 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHH
Confidence 4578999999999999999999998644221 11 24444444444433100 0 123578999
Q ss_pred HHHHHhhccC-CCCccc----ccCCCC-----------cc--cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHH
Q 048279 85 CRYVYNHQNR-DGGWGL----HIEGPS-----------TM--FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWIL 146 (202)
Q Consensus 85 ~~~L~~~Q~~-DGgWg~----~~~g~s-----------~v--~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~ 146 (202)
++||++.|.+ ||.|.. |..+.. .+ +.|+.++..| ++.+..+| .+.++++||++||.
T Consensus 251 i~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~L--M~~~~~~~----~~~~aI~~Av~WL~ 324 (408)
T 1r76_A 251 IHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFL--MEIEAPSD----AVKQAIRGGVAWLN 324 (408)
T ss_dssp HHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHH--TTSSSCCH----HHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHH--ccCCCCCH----HHHHHHHHHHHHHH
Confidence 9999999999 999863 111111 12 1223333333 33332221 23447999999999
Q ss_pred HcC
Q 048279 147 EHG 149 (202)
Q Consensus 147 ~~G 149 (202)
++.
T Consensus 325 s~Q 327 (408)
T 1r76_A 325 TSV 327 (408)
T ss_dssp HSC
T ss_pred Hhh
Confidence 985
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.72 E-value=5.5e-08 Score=95.32 Aligned_cols=134 Identities=10% Similarity=0.119 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-hccCCCCccccc
Q 048279 26 IVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN-HQNRDGGWGLHI 102 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~-~Q~~DGgWg~~~ 102 (202)
++.+.|+++.+.+++.|++||+|.. ...++.++|+..+-.+..+.... .+++..++++++||.+ +|++||+|...-
T Consensus 296 ~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~-~v~~~~i~~al~~L~~~~Q~~dG~f~~~~ 374 (915)
T 2hr0_B 296 GALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI-AIDSQVLCGAVKWLILEKQKPDGVFQEDA 374 (915)
T ss_dssp HHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCCCS
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHhhccCCCccccCc
Confidence 4556888899999999999999974 23466777877766665555332 4677899999999995 999999996421
Q ss_pred --------CC-----CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHH
Q 048279 103 --------EG-----PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLS 163 (202)
Q Consensus 103 --------~g-----~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~La 163 (202)
++ ++++..|+.+++||...|.....+ -......++||.+||.++-.- ....+++.++|
T Consensus 375 ~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~--~~~~~~~i~~A~~yL~~~~~~-~~~~y~~a~la 445 (915)
T 2hr0_B 375 PVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQ--VNSLPGSITKAGDFLEANYMN-LQRSYTVAIAG 445 (915)
T ss_dssp CCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTT--CTTHHHHHHHHHHHHHHHGGG-CCSHHHHHHHH
T ss_pred cccchhhcCCccCccccccccHHHHHHHHHhcccccccC--cccchHHHHHHHHHHHHhhhc-cCCHHHHHHHH
Confidence 11 245677889999998886431110 001123789999999987321 12456665554
No 22
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.54 E-value=3.3e-07 Score=81.07 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCCC--------------CccccHHHHHHHHHhCCC-CCCC-------CHHHHHHHH
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGDYGG--------------PMFLMPGLVITLSITGAL-NAVL-------SEEHKKEMC 85 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~--------------~~~~ta~~v~~l~~~g~~-~~~~-------~~~~~~~~~ 85 (202)
...|+||++||.+.|++||+|.+.... .+.+|+.++++|...|.. .... ..+.+++++
T Consensus 141 ~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~ 220 (367)
T 1hzf_A 141 PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKAS 220 (367)
T ss_dssp HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHH
Confidence 578999999999999999999876432 134566666777655531 0000 124688899
Q ss_pred HHHHhh--cc------------------------------------CCCC---ccccc---------------------C
Q 048279 86 RYVYNH--QN------------------------------------RDGG---WGLHI---------------------E 103 (202)
Q Consensus 86 ~~L~~~--Q~------------------------------------~DGg---Wg~~~---------------------~ 103 (202)
+||.++ |+ .+|+ |+... .
T Consensus 221 ~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~ 300 (367)
T 1hzf_A 221 SFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQ 300 (367)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------C
T ss_pred HHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCC
Confidence 999776 32 1344 76521 1
Q ss_pred CCC-cccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 104 GPS-TMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 104 g~s-~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
+.+ ++.+|++|+.||...+. +.+ .+.+.++||.++
T Consensus 301 ~~s~~vE~TAyaLLall~~~~--~~~--------~~~~iv~WL~~q 336 (367)
T 1hzf_A 301 APALWIETTAYALLHLLLHEG--KAE--------MADQASAWLTRQ 336 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHTC--SSH--------HHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhccC--chh--------hhHHHHHHHHhC
Confidence 222 78899999999887642 222 789999999986
No 23
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.49 E-value=4.1e-07 Score=92.02 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
.+++.+.|++|++.+++.|++||+|.. ...++.++|+..+-+|..+......++++.++++++||.++|++||+|...
T Consensus 867 ~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 867 IDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 356778899999999999999999974 234677888877777766654433477889999999999999999998542
Q ss_pred c--------CC-CCcccchHHHHHHHHHcCCCC-CCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHH
Q 048279 102 I--------EG-PSTMFGSVLNYVTLRLLGEGA-NDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWL 162 (202)
Q Consensus 102 ~--------~g-~s~v~~T~~ay~AL~l~G~~~-~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~L 162 (202)
- ++ .+.++.|+.++.||.-.|... +.+ ..++||.+||.++-... ...|++-.+
T Consensus 947 ~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~-------~~i~~a~~~L~~~~~~~-~~~~~~a~~ 1009 (1325)
T 2pn5_A 947 GAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHA-------EVIQKGMTYLSNQFGSI-NNAYDLSIA 1009 (1325)
T ss_dssp SCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTH-------HHHHHHHHHHHHHGGGC-CCHHHHHHH
T ss_pred ccccChhhcCcccCCccccHHHHHHHhhCcccccccH-------HHHHHHHHHHHHhhccc-CCHHHHHHH
Confidence 1 11 123444555555554333211 111 16889999999864321 244666543
No 24
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=3.4e-07 Score=82.19 Aligned_cols=108 Identities=10% Similarity=0.153 Sum_probs=82.0
Q ss_pred HHHHHHHHhccC---C-CCCcc-----c--------CCCCCccccHHHHHHHHHhCCCCCCCC----------HHHHHHH
Q 048279 32 RRALSYHSTLQA---H-DGHWP-----G--------DYGGPMFLMPGLVITLSITGALNAVLS----------EEHKKEM 84 (202)
Q Consensus 32 ~ra~~~L~~~Q~---~-DG~W~-----g--------~~~~~~~~ta~~v~~l~~~g~~~~~~~----------~~~~~~~ 84 (202)
++..+||.++|+ + ||++. + .-+.++-.+-..+..+++++... ..+ ...++++
T Consensus 118 ~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~-~~~~~~~~~~~~~~id~~~~ 196 (390)
T 3dra_B 118 KKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDD-NNNNNNREDSNETDIDLISL 196 (390)
T ss_dssp HHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC--------------CCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCc-ccccccccccccccccHHHH
Confidence 467889999998 6 99998 2 12456666555666677887532 000 1236889
Q ss_pred HHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 85 CRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 85 ~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
++||+++|+-|||++..++.+|+.-.|--|+.||.++|... . -+.+-++||.+++.
T Consensus 197 ~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~--~--------d~~~l~~WL~~RQ~ 252 (390)
T 3dra_B 197 QQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL--E--------KLKSTKEWLIHRQV 252 (390)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG--G--------GCHHHHHHHHTTBC
T ss_pred HHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc--c--------cHHHHHHHHHHcCc
Confidence 99999999999999999999998888989999999998763 2 46888999998753
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.37 E-value=4.8e-07 Score=81.50 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccCCCCCccc--CCCC----------------------------------Ccc----ccHHHHHHHHH
Q 048279 29 NTLRRALSYHSTLQAHDGHWPG--DYGG----------------------------------PMF----LMPGLVITLSI 68 (202)
Q Consensus 29 ~ai~ra~~~L~~~Q~~DG~W~g--~~~~----------------------------------~~~----~ta~~v~~l~~ 68 (202)
.+.++..+.|+..|+++|.|.- ++.. ..+ .|+..+++|..
T Consensus 81 ~~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~r 160 (408)
T 1r76_A 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHH
Confidence 4569999999999999999964 2111 111 24555555544
Q ss_pred hCCC----CCCCCHHHHHHHHHHHHhhccCCCCcccccCCCCcc--------cchHHHHHHHHHcCCCCCC----CCC-C
Q 048279 69 TGAL----NAVLSEEHKKEMCRYVYNHQNRDGGWGLHIEGPSTM--------FGSVLNYVTLRLLGEGAND----GRG-A 131 (202)
Q Consensus 69 ~g~~----~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v--------~~T~~ay~AL~l~G~~~~~----p~~-~ 131 (202)
+... +...-.+.++|+++||++.|.+||||+-+....... ..|+-++-.|..++....+ +++ .
T Consensus 161 v~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~ 240 (408)
T 1r76_A 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhh
Confidence 3221 112224678899999999999999998764322111 2466666666666542110 000 0
Q ss_pred CCchhHHHHHHHHHHHcCCC
Q 048279 132 NDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 132 ~~~~~~l~ra~~wI~~~GG~ 151 (202)
....++++||++||++.+-.
T Consensus 241 ~~~~~av~Rgi~~Ll~~Qe~ 260 (408)
T 1r76_A 241 TRALEATNAAIHCIVETQVV 260 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCE
T ss_pred hhHHHHHHHHHHHHHHhhcc
Confidence 01123999999999998643
No 26
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.25 E-value=5.4e-06 Score=79.48 Aligned_cols=134 Identities=15% Similarity=0.169 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLHI 102 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~~ 102 (202)
++...-|+.+..-+++.|++||+|.. .-.++.++|+..+-.+..+.... .+++..+.++..||.++|++||.|...-
T Consensus 364 ~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i-~id~~~i~~a~~wL~~~Q~~~G~f~e~g 442 (767)
T 4fxk_B 364 DHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV-GGSPEKLQETSNWLLSQQQADGSFQDPC 442 (767)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSS-SCCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHhhhhcccchhcc
Confidence 45666788999999999999999863 33467788887666666655432 4678889999999999999999996421
Q ss_pred --------CC----CCcccchHHHHHHHHHcCCCCCCCCC---CCCchhHHHHHHHHHHHcCCCcchhhHHH
Q 048279 103 --------EG----PSTMFGSVLNYVTLRLLGEGANDGRG---ANDGRGAMERGRSWILEHGGATALTSWGK 159 (202)
Q Consensus 103 --------~g----~s~v~~T~~ay~AL~l~G~~~~~p~~---~~~~~~~l~ra~~wI~~~GG~~~~~~~~k 159 (202)
++ .++++.|+..++||...+....+... ...+...+.||.+||.++-.......+++
T Consensus 443 ~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~~~~~y~~ 514 (767)
T 4fxk_B 443 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAA 514 (767)
T ss_dssp CSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSCCCCHHHH
T ss_pred hhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 11 24577788888888776643222100 00122357889999987643222334444
No 27
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.22 E-value=2.9e-06 Score=76.57 Aligned_cols=121 Identities=10% Similarity=-0.037 Sum_probs=83.0
Q ss_pred HHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCC-CCCHHHHHHHH----HHHHhhccCCCCcccccCCCCc
Q 048279 33 RALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNA-VLSEEHKKEMC----RYVYNHQNRDGGWGLHIEGPST 107 (202)
Q Consensus 33 ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~-~~~~~~~~~~~----~~L~~~Q~~DGgWg~~~~g~s~ 107 (202)
+.+..|...|..|+++.++. .++=++|..+++|..++..+. ....+.+.+++ ++|.+.|++||++| +
T Consensus 156 ~~v~~Ll~~~~~~~~~~g~~-~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG-------N 227 (414)
T 2bb6_A 156 SVVGKLLYAVEHKPHLLQDH-VSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG-------N 227 (414)
T ss_dssp HHHHHHHHHHHSSSCSCCTT-THHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS-------S
T ss_pred HHHHHHHHHhhccCcCCCCc-ccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc-------c
Confidence 46667777777777765544 244456777777766654211 12245677777 66777799999986 6
Q ss_pred ccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc---CCCcchhhHHHHHHHhccC
Q 048279 108 MFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH---GGATALTSWGKMWLSVLYL 167 (202)
Q Consensus 108 v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~---GG~~~~~~~~k~~Lal~G~ 167 (202)
+++|++|+-||..+|.++... .-.+.+++++|++. |+-...-.-..+.+|+.|-
T Consensus 228 ~~ST~lA~QAL~~~~~~~~~~------~w~~~~a~~~Ll~q~~dG~F~np~ataQ~lpaL~gk 284 (414)
T 2bb6_A 228 VYSTPLALQLLMGSLRPSVEL------GTACLKAKAALQASLQHKTFQNPLMISQLLPVLNQK 284 (414)
T ss_dssp TTTHHHHHHHHTTCSSCCHHH------HHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHHTTTC
T ss_pred hhhHHHHHHHHHhcCCCcccc------cchHHHHHHHHHHhccCCCCCChHHHHHHHHHhcCC
Confidence 889999999999997754431 01678899999863 5555444667788999865
No 28
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.18 E-value=1.5e-05 Score=82.51 Aligned_cols=135 Identities=9% Similarity=0.108 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-hccCCCCcccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN-HQNRDGGWGLH 101 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~-~Q~~DGgWg~~ 101 (202)
+++...|+.+..-+++.|++||+|.. ...++.++|+..+-.+..+.... .+++..++++.+||.+ +|++||.|...
T Consensus 1042 ~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1042 QESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLI-AIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcc-cCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence 35666788899999999999999863 33577888888776666665432 4778899999999995 99999999642
Q ss_pred c--------CC-----CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCCcchhhHHHHHHH
Q 048279 102 I--------EG-----PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGATALTSWGKMWLS 163 (202)
Q Consensus 102 ~--------~g-----~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~~~~~~~~k~~La 163 (202)
. ++ .+++..|+.+++||...|.....+ -......+.+|.+||.++-.- ....+++.++|
T Consensus 1121 ~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~--~~~~~~~i~~a~~yL~~~~~~-~~~~y~~A~la 1192 (1661)
T 2b39_A 1121 GPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQ--VNSLGRSIAKAGDFLENHYRE-LRRPYTVAIAA 1192 (1661)
T ss_dssp SCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTT--CSSHHHHHHHHHHHHHHHTTT-CCSHHHHHHHH
T ss_pred cceechhhcCCccccccCccccHHHHHHHHHhcccccccc--CcchhHHHHHHHHHHHHhhhc-cCCHHHHHHHH
Confidence 1 11 125667888888887776431111 001223788999999876221 12346664443
No 29
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.12 E-value=2.7e-06 Score=74.71 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=71.3
Q ss_pred HHHHHHhccCCCCCccc--CCC---------CCccc----cHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHhhccCCCC
Q 048279 34 ALSYHSTLQAHDGHWPG--DYG---------GPMFL----MPGLVITLSITGAL-NAVLSEEHKKEMCRYVYNHQNRDGG 97 (202)
Q Consensus 34 a~~~L~~~Q~~DG~W~g--~~~---------~~~~~----ta~~v~~l~~~g~~-~~~~~~~~~~~~~~~L~~~Q~~DGg 97 (202)
..+.++.-|+++|.|.- ++. ...++ |+..+++|..+... +...-.+.++|+++||++.|.+|||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 47889999999999985 221 12222 55555555443211 0112246788999999999999999
Q ss_pred cccccCCCCcc--------cchHHHHHHHHHcCCCCCCCC-C------CCCchhHHHHHHHHHHHcC
Q 048279 98 WGLHIEGPSTM--------FGSVLNYVTLRLLGEGANDGR-G------ANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 98 Wg~~~~g~s~v--------~~T~~ay~AL~l~G~~~~~p~-~------~~~~~~~l~ra~~wI~~~G 149 (202)
|+-+....... ..|+-++-.|..++.....-. | .....++++||++||++.+
T Consensus 116 WpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Q 182 (332)
T 1gxm_A 116 LPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQ 182 (332)
T ss_dssp CBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhh
Confidence 99764332111 257777777777753111000 0 0011239999999999975
No 30
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.01 E-value=1.3e-05 Score=78.61 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHh-ccCCCCCcccCCCC---------------CccccHHHHHHHHHhCCC---CCCCCHHHHHHHHHHH
Q 048279 28 TNTLRRALSYHST-LQAHDGHWPGDYGG---------------PMFLMPGLVITLSITGAL---NAVLSEEHKKEMCRYV 88 (202)
Q Consensus 28 ~~ai~ra~~~L~~-~Q~~DG~W~g~~~~---------------~~~~ta~~v~~l~~~g~~---~~~~~~~~~~~~~~~L 88 (202)
...|++|++||.+ .|.+||+|...+.. +..+++..+++|...|.. ......+.++++++||
T Consensus 349 ~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL 428 (915)
T 2hr0_B 349 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 428 (915)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHH
Confidence 4789999999995 99999999764321 233456666667666542 0011245788999999
Q ss_pred HhhccC---------------------------------CCC-cccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCc
Q 048279 89 YNHQNR---------------------------------DGG-WGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDG 134 (202)
Q Consensus 89 ~~~Q~~---------------------------------DGg-Wg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~ 134 (202)
.++|++ +|. |.......+++.+|++|+.||...+.. +
T Consensus 429 ~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~------- 499 (915)
T 2hr0_B 429 EANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--D------- 499 (915)
T ss_dssp HHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--T-------
T ss_pred HHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--h-------
Confidence 998665 232 432211113678899999999888642 2
Q ss_pred hhHHHHHHHHHHHcC
Q 048279 135 RGAMERGRSWILEHG 149 (202)
Q Consensus 135 ~~~l~ra~~wI~~~G 149 (202)
.+.+..+||.++.
T Consensus 500 --~~~~~v~wL~~qq 512 (915)
T 2hr0_B 500 --FVPPVVRWLNEQR 512 (915)
T ss_dssp --THHHHHHHHHTCC
T ss_pred --hHHHHHHHHHhcc
Confidence 5788999999863
No 31
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.86 E-value=5.4e-05 Score=78.40 Aligned_cols=128 Identities=9% Similarity=0.079 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-hccCCCCcccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN-HQNRDGGWGLH 101 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~-~Q~~DGgWg~~ 101 (202)
+++...|+.+..-+++.|++||+|.. .-.++.++|+..+-.+..+.... .+++..++++.+||.+ +|++||.|...
T Consensus 1043 ~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1043 QKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYV-EQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 34556677888888899999999864 44567888887776665554332 4778899999999999 99999998642
Q ss_pred c--------CC------CCcccchHHHHHHHHHcCCC----CCCCCCCCCchhHHHHHHHHHHHc-CCCcchhhHHHHHH
Q 048279 102 I--------EG------PSTMFGSVLNYVTLRLLGEG----ANDGRGANDGRGAMERGRSWILEH-GGATALTSWGKMWL 162 (202)
Q Consensus 102 ~--------~g------~s~v~~T~~ay~AL~l~G~~----~~~p~~~~~~~~~l~ra~~wI~~~-GG~~~~~~~~k~~L 162 (202)
. ++ ++++..|+.+++||...|.. ..++ .+.+|.+||.++ ... ...+++..+
T Consensus 1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~--------~i~~a~~yL~~~~~~~--~~~y~~A~l 1191 (1676)
T 3cu7_A 1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDT--------ALIKADNFLLENTLPA--QSTFTLAIS 1191 (1676)
T ss_dssp SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHH--------HHHHHHHHHHHHHSSC--SCHHHHHHH
T ss_pred ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHH--------HHHHHHHHHHHhhhcc--CCHHHHHHH
Confidence 1 11 12456678888888766532 1222 788999999876 222 233555444
Q ss_pred H
Q 048279 163 S 163 (202)
Q Consensus 163 a 163 (202)
|
T Consensus 1192 A 1192 (1676)
T 3cu7_A 1192 A 1192 (1676)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.83 E-value=2.6e-05 Score=70.35 Aligned_cols=79 Identities=10% Similarity=-0.033 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHhhccCCCCccccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSE--EHKKEMCRYVYNHQNRDGGWGLHI 102 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~--~~~~~~~~~L~~~Q~~DGgWg~~~ 102 (202)
..++.+|+...++|.+.|++||++. +.+.|+..+-+|...+.. ... ....++.++|++ |++||+|.
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG~FG-----N~~ST~lA~QAL~~~~~~---~~~~~w~~~~a~~~Ll~-q~~dG~F~--- 269 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEGYFG-----NVYSTPLALQLLMGSLRP---SVELGTACLKAKAALQA-SLQHKTFQ--- 269 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBS-----STTTHHHHHHHHTTCSSC---CHHHHHHHHHHHHHHHH-HHTTTCCC---
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcc-----chhhHHHHHHHHHhcCCC---cccccchHHHHHHHHHH-hccCCCCC---
Confidence 4567777777799999999999994 567788888888777752 222 256789999999 99999986
Q ss_pred CCCCcccchHHHHHHHH
Q 048279 103 EGPSTMFGSVLNYVTLR 119 (202)
Q Consensus 103 ~g~s~v~~T~~ay~AL~ 119 (202)
++.+|+.++.||.
T Consensus 270 ----np~ataQ~lpaL~ 282 (414)
T 2bb6_A 270 ----NPLMISQLLPVLN 282 (414)
T ss_dssp ----SHHHHHHHHHHTT
T ss_pred ----ChHHHHHHHHHhc
Confidence 5568888888874
No 33
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.76 E-value=3.6e-06 Score=87.12 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCccc--CCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHh-hccCCCCcccc
Q 048279 25 DIVTNTLRRALSYHSTLQAHDGHWPG--DYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYN-HQNRDGGWGLH 101 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~-~Q~~DGgWg~~ 101 (202)
+++..-|+.+..-+++.|++||+|.. .-.++.++||..+-.+..+...-..+++..+.++++||.+ +|++||+|...
T Consensus 1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 45667788899999999999999864 3346778888765444433322112667889999999998 89999999652
Q ss_pred c--------CC----CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 102 I--------EG----PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 102 ~--------~g----~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
- +| .++++.||..++||.-.+....+. .......+.||..||.++
T Consensus 1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~--~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDY--VNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp -----------------------------------------------------------
T ss_pred ccccchhccCCccCCCCcccchHHHHHHHHhcccccccc--cccchHHHHHHHHHHHHh
Confidence 1 11 347889999999998876421100 001122899999999876
No 34
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.73 E-value=3.1e-05 Score=79.44 Aligned_cols=127 Identities=11% Similarity=0.128 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhccCCCCCcccC--C---------CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh-----
Q 048279 28 TNTLRRALSYHSTLQAHDGHWPGD--Y---------GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNH----- 91 (202)
Q Consensus 28 ~~ai~ra~~~L~~~Q~~DG~W~g~--~---------~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~----- 91 (202)
...+++|++||.++|++||+|... + +....+|+..+++|...|.. ..++.++++++||.++
T Consensus 1037 ~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~---~~~~~i~~A~~~L~~~~~~~~ 1113 (1451)
T 4acq_A 1037 EAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLT---VTHPVVRNALFCLESAWKTAQ 1113 (1451)
T ss_dssp THHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCC---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhhhhcc
Confidence 357999999999999999999842 2 12345678777888777752 2235688888888865
Q ss_pred -------------------------cc------------CCCC---cccccC-------------CCCcccchHHHHHHH
Q 048279 92 -------------------------QN------------RDGG---WGLHIE-------------GPSTMFGSVLNYVTL 118 (202)
Q Consensus 92 -------------------------Q~------------~DGg---Wg~~~~-------------g~s~v~~T~~ay~AL 118 (202)
+. .+|+ |+.... ...++-+|++|+.||
T Consensus 1114 ~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLal 1193 (1451)
T 4acq_A 1114 EGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAY 1193 (1451)
T ss_dssp SSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHH
Confidence 11 2465 764321 123577899999999
Q ss_pred HHcCCCC---CCCCCCCCchhHHHHHHHHHHHc----CCCcch-------hhHHHHHHHhc
Q 048279 119 RLLGEGA---NDGRGANDGRGAMERGRSWILEH----GGATAL-------TSWGKMWLSVL 165 (202)
Q Consensus 119 ~l~G~~~---~~p~~~~~~~~~l~ra~~wI~~~----GG~~~~-------~~~~k~~Lal~ 165 (202)
..++..+ +. +...+..+||.++ ||-... ..++|+.....
T Consensus 1194 l~~~~~~~~~d~--------~~a~~iv~WL~~qr~~~Ggf~STQdTv~aL~ALa~Y~~~~~ 1246 (1451)
T 4acq_A 1194 LTAQPAPTSEDL--------TSATNIVKWITKQQNAQGGFSSTQDTVVALHALSKYGAATF 1246 (1451)
T ss_dssp HCCSSCCCHHHH--------HHHHTTHHHHTTCCCTTSCCSSHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccccccch--------hhHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHhcC
Confidence 8876321 21 1577889999974 444332 35566665544
No 35
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.71 E-value=0.0002 Score=64.27 Aligned_cols=117 Identities=10% Similarity=0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCC---CCCCCC-----HHHHHHHHHHHHhhccCCCCcccccC
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGA---LNAVLS-----EEHKKEMCRYVYNHQNRDGGWGLHIE 103 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~---~~~~~~-----~~~~~~~~~~L~~~Q~~DGgWg~~~~ 103 (202)
.+.+.-|...|..||+|. ++=++|..+++|.-+.. .+.... ...+++++++|.+.|++||++|
T Consensus 133 ~~~v~kLl~~~~~~g~~~-----sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG---- 203 (399)
T 2pmv_A 133 LPIAVRFAKTLLANSSPF-----NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG---- 203 (399)
T ss_dssp HHHHHHHHHHHHHCCSCC-----CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS----
T ss_pred HHHHHHHHHHHHccCCcc-----cchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc----
Confidence 456666777777776432 33455666666666543 221111 2356778888888899999986
Q ss_pred CCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH---cCCCcchhhHHHHHHHhccC
Q 048279 104 GPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE---HGGATALTSWGKMWLSVLYL 167 (202)
Q Consensus 104 g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~---~GG~~~~~~~~k~~Lal~G~ 167 (202)
++++|++|+-||..+|..+... | .+.++.+||++ .|+-...-.-..+.+||.|-
T Consensus 204 ---n~yST~LA~QAL~~~~~~~~~~---W----~c~~al~~l~~q~~~G~F~np~~taQilPaL~~k 260 (399)
T 2pmv_A 204 ---DIYSTGLAMQALSVTPEPSKKE---W----NCKKTTDMILNEIKQGKFHNPMSIAQILPSLKGK 260 (399)
T ss_dssp ---SHHHHHHHHHHHHHCSSCCSSC---C----CHHHHHHHHHHHHTTTTTCSHHHHHHHHHHHTTC
T ss_pred ---ccccHHHHHHHHHhcCCCcccc---c----cHHHHHHHHHHHhhCCCcCCHHHHHHHHHHhcCC
Confidence 7899999999999998753321 2 57888888886 35555445667788888864
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.68 E-value=4.4e-05 Score=68.58 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHhhccCCCCccccc
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEE-HKKEMCRYVYNHQNRDGGWGLHI 102 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~-~~~~~~~~L~~~Q~~DGgWg~~~ 102 (202)
+.++..+|++++++|.+.|++||+| |+.+.|+..+-+|...+... . .+ ...++.++|++ |++||+|+
T Consensus 178 ~~~i~~ai~~~~~~l~~~q~~dG~f-----Gn~yST~LA~QAL~~~~~~~--~-~~W~c~~al~~l~~-q~~~G~F~--- 245 (399)
T 2pmv_A 178 RSLFGQVLKDIVEKISMKIKDNGII-----GDIYSTGLAMQALSVTPEPS--K-KEWNCKKTTDMILN-EIKQGKFH--- 245 (399)
T ss_dssp HHHHHHHHHHHHHHHTTSBCTTSCB-----SSHHHHHHHHHHHHHCSSCC--S-SCCCHHHHHHHHHH-HHTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcc-----cccccHHHHHHHHHhcCCCc--c-ccccHHHHHHHHHH-HhhCCCcC---
Confidence 4469999999999999999999999 47788998888998888631 1 12 36789999999 99999986
Q ss_pred CCCCcccchHHHHHHHHHcC
Q 048279 103 EGPSTMFGSVLNYVTLRLLG 122 (202)
Q Consensus 103 ~g~s~v~~T~~ay~AL~l~G 122 (202)
++.+|+..+-||.--+
T Consensus 246 ----np~~taQilPaL~~kt 261 (399)
T 2pmv_A 246 ----NPMSIAQILPSLKGKT 261 (399)
T ss_dssp ----SHHHHHHHHHHHTTCC
T ss_pred ----CHHHHHHHHHHhcCCC
Confidence 5778888888874433
No 37
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.64 E-value=0.00031 Score=62.99 Aligned_cols=113 Identities=13% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCCCCcccCC--CCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcc---------------
Q 048279 31 LRRALSYHSTLQAHDGHWPGDY--GGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQN--------------- 93 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG~W~g~~--~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~--------------- 93 (202)
++++++|+.+.|+.||.+...- ++..-.|-+.+.+|.++|.. . ..+++.++||.++|.
T Consensus 193 ~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~---~--~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~ 267 (390)
T 3dra_B 193 LISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP---L--EKLKSTKEWLIHRQVDYPENLYPKDGNGDG 267 (390)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC---G--GGCHHHHHHHHTTBCCCCTTTCC-------
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc---c--ccHHHHHHHHHHcCcccccccccccccccc
Confidence 5789999999999999998643 33333455567788999873 1 346788999999998
Q ss_pred -------------CCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH------cCCCcch
Q 048279 94 -------------RDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE------HGGATAL 154 (202)
Q Consensus 94 -------------~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~------~GG~~~~ 154 (202)
++||+...++-..+.--|.|+..+|.+++....+.- ...+.++||++ .||....
T Consensus 268 ~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~~~l~-------d~~~l~~yiL~c~Q~~~~GGf~d~ 340 (390)
T 3dra_B 268 NGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLV-------DLNKAEDYLLNKTQNQLFGGFGRD 340 (390)
T ss_dssp -----CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGGGGGS-------CHHHHHHHHHHTTBCTTTCSBCSS
T ss_pred ccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccccccc-------CHHHHHHHHHHhccCCCCCCcCCC
Confidence 469988777666676777889999999984111100 25788899987 4787766
Q ss_pred h
Q 048279 155 T 155 (202)
Q Consensus 155 ~ 155 (202)
|
T Consensus 341 P 341 (390)
T 3dra_B 341 P 341 (390)
T ss_dssp T
T ss_pred C
Confidence 5
No 38
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.54 E-value=3e-05 Score=75.45 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhccC---CCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 048279 25 DIVTNTLRRALSYHSTLQA---HDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGWGLH 101 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~---~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgWg~~ 101 (202)
+.-...++.-++.++.+.+ .|| |.|+.+.+.+=||- |...-..+..+ .+.-.+.++||++.|.+|||||..
T Consensus 50 ~~~~~~~~~Lie~VK~~l~~~~~~g-~~g~~S~S~YDTAW-VAmvp~~~~~~----~p~Fp~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 50 SSYRERAEVLVSEIKAMLNPAITGD-GESMITPSAYDTAW-VARVPAIDGSA----RPQFPQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CCCCCCCCHHHHHH-HHTCBCTTSCS----SBSSHHHHHHHHHCCCTTSCCSCT
T ss_pred hhHHHHHHHHHHHHHHHhccccCCC-CCcccccCHHHhhH-HheeecCCCCC----CCCchHHHHHHHHccCCCCCCCCC
Confidence 3444445555555555544 677 55666655554554 32211111111 123456799999999999999963
Q ss_pred cCC--CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 102 IEG--PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 102 ~~g--~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
..- .-.+..|..|+.||+.-+..+ +.+.||.+||.++-
T Consensus 124 ~~~~~~d~ll~TlAcvlAL~~w~~~~----------~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 124 SHFLLSDRLLATLSCVLVLLKWNVGD----------LQVEQGIEFIKSNL 163 (817)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHccCCH----------HHHHHHHHHHHHHH
Confidence 210 124788999999999976543 18999999999873
No 39
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.36 E-value=0.00036 Score=70.66 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=61.8
Q ss_pred cCCCCCccccHHHHHHHHHhCCCCCCCCHH-------HHHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHc-
Q 048279 50 GDYGGPMFLMPGLVITLSITGALNAVLSEE-------HKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLL- 121 (202)
Q Consensus 50 g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~-------~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~- 121 (202)
||.+-++.-....+++++.+...+ ..+++ .+++++++|++.|++||||+.+.+++++...|+.++-+|..+
T Consensus 837 GC~EQ~~s~~~p~~~~~~yl~~~~-~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~ 915 (1325)
T 2pn5_A 837 GCGEQNMVKFVPNILVLDYLHAIG-SKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAV 915 (1325)
T ss_dssp CSTTGGGGGTHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHH
Confidence 445555555555555555553211 12333 345556677999999999999988889999999988888766
Q ss_pred --CCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 122 --GEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 122 --G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
|...++ +.+.||.+||.++.
T Consensus 916 ~~~~~v~~--------~~l~~a~~~L~~~q 937 (1325)
T 2pn5_A 916 KYISDIDA--------AMVEKALDWLASKQ 937 (1325)
T ss_dssp TTCSCSCH--------HHHHHHHHHHHHTC
T ss_pred hhEEcCCH--------HHHHHHHHHHHhhh
Confidence 332332 28999999999753
No 40
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=97.26 E-value=0.00037 Score=67.48 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccCCCCcccccCCC--CcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEGP--STMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g~--s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
-.+.++||++.|++|||||.....+ -.+..|..|+.||+.-+..+ +.+.||.+||.++
T Consensus 76 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~----------~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 76 FPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGE----------TQVQKGIEFFRTQ 135 (785)
T ss_dssp SHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHH
Confidence 4567999999999999999642211 23889999999999876543 2899999999976
No 41
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=97.10 E-value=0.00034 Score=67.23 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCC---cccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEGPS---TMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g~s---~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
-.+.++||++.|.+|||||.. ++.+ .+..|..|+.||+.-+..++ .+.||.+||.++
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~-~~~~~~D~ll~TLAcvlAL~~w~~~~~----------~i~rGl~fl~~n 111 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDA-YLFSYHDRLINTLACVVALRSWNLFPH----------QCNKGITFFREN 111 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCS-SSCCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCC-CCcchhhHHHHHHHHHHHHHHccCCHH----------HHHHHHHHHHHH
Confidence 355799999999999999963 2212 47889999999998655432 899999999976
No 42
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.02 E-value=0.00043 Score=66.87 Aligned_cols=59 Identities=20% Similarity=0.432 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhccCCCCcccccCC--CCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 81 KKEMCRYVYNHQNRDGGWGLHIEG--PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 81 ~~~~~~~L~~~Q~~DGgWg~~~~g--~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
-.+.++||++.|.+|||||....- .-.+..|..|+.||+.-+..++ .+.||.+||.++-
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~----------~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGHS----------QVQQGAEFIAENL 115 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCHH----------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHH----------HHHHHHHHHHHHH
Confidence 455799999999999999953211 1247889999999999765431 8999999999774
No 43
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.80 E-value=0.011 Score=56.46 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=61.3
Q ss_pred ccCCCCCccccHHHHHHHHHh---CCCCCCCCH-------HHHHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHH
Q 048279 49 PGDYGGPMFLMPGLVITLSIT---GALNAVLSE-------EHKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTL 118 (202)
Q Consensus 49 ~g~~~~~~~~ta~~v~~l~~~---g~~~~~~~~-------~~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL 118 (202)
.||.+-++......+++++.+ +... .+.+ ..++++.+.+++.|++||||+.+.+.+++...|+.+.-.|
T Consensus 329 ~GC~EQ~ms~~~p~i~v~~yl~~t~q~~-~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l 407 (767)
T 4fxk_B 329 RGCGEQTMIYLAPTLAASRYLDKTEQWS-TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL 407 (767)
T ss_dssp CCSTTGGGGGTHHHHHHHHHHHHTCTTT-TSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHH
T ss_pred ccchhhHHHhhhhhhhHHHHHHhhhhhc-ccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHH
Confidence 455565665555555555443 2211 1111 2356677888899999999999988888888888887777
Q ss_pred HHcCCC-CCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 119 RLLGEG-ANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 119 ~l~G~~-~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
..+..- .-++ ..+.++..||..+.
T Consensus 408 ~~A~~~i~id~-------~~i~~a~~wL~~~Q 432 (767)
T 4fxk_B 408 SLAQEQVGGSP-------EKLQETSNWLLSQQ 432 (767)
T ss_dssp HHTCSSSSCCH-------HHHHHHHHHHHHTB
T ss_pred HHHHhhcCcch-------HHHHHHHHHHHHhh
Confidence 666421 1122 27999999998864
No 44
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=94.39 E-value=0.071 Score=55.28 Aligned_cols=62 Identities=5% Similarity=0.055 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 048279 80 HKKEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~ 147 (202)
.++.+.+.+++.|++||||+.+.+++++...|+.+.-.|..+..-..-+ ...+.+|.+||.+
T Consensus 1047 ~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~------~~~l~~a~~~L~~ 1108 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAID------SKDLCETVKWLIL 1108 (1661)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCC------HHHHHHHHHHhhH
Confidence 3445667788899999999999877888888988888776664221211 2389999999995
No 45
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=94.13 E-value=0.051 Score=52.21 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=37.7
Q ss_pred HHHHHHHHhccCCCCCcccCCCCC----ccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGGP----MFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~~----~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
..+++||++.|.+||+|...-... ...|..++++|...+. .++.++++++||.+.
T Consensus 53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~-----~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL-----FPHQCNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHH
Confidence 468999999999999997532111 1123445566665442 357899999999874
No 46
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=94.12 E-value=0.078 Score=51.37 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=38.3
Q ss_pred HHHHHHHHhccCCCCCcccCCCCC----ccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGGP----MFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~~----~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
..+++||++.|.+||+|......+ ...|..++++|...+. .++.++++++||.+.
T Consensus 77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~-----~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT-----GETQVQKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHH
Confidence 468999999999999997642211 1223445666665443 357899999999875
No 47
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=93.88 E-value=0.076 Score=51.63 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHHhccCCCCCcccCCCCC----ccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGGP----MFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~~----~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
..+++||++.|.+||+|....... ...|..++++|...+. .++.++++++||.+.
T Consensus 104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-----~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV-----GDLQVEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHH
Confidence 468999999999999997542211 1123445566665443 357899999999985
No 48
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=93.59 E-value=0.11 Score=50.26 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=38.1
Q ss_pred HHHHHHHHhccCCCCCcccCCCCC----ccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhc
Q 048279 32 RRALSYHSTLQAHDGHWPGDYGGP----MFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQ 92 (202)
Q Consensus 32 ~ra~~~L~~~Q~~DG~W~g~~~~~----~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q 92 (202)
..+++||++.|.+||+|....... ...|..++++|...+. .++.++++++||.+.-
T Consensus 56 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~-----~~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 56 PQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT-----GHSQVQQGAEFIAENL 115 (764)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHH
Confidence 357999999999999997543211 1123445566665442 3578999999998764
No 49
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=93.14 E-value=0.11 Score=53.88 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccCCCCcccccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHH
Q 048279 82 KEMCRYVYNHQNRDGGWGLHIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILE 147 (202)
Q Consensus 82 ~~~~~~L~~~Q~~DGgWg~~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~ 147 (202)
+.+.+.+++.|++||||+.+.+++++...|+.+.-.|..+..-..-| ...+.+|.+||.+
T Consensus 1050 ~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~------~~~l~~a~~~L~~ 1109 (1676)
T 3cu7_A 1050 KEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQN------QNSICNSLLWLVE 1109 (1676)
T ss_dssp HHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCC------HHHHHHHHHHHHH
Confidence 33455567899999999999777788888988877776554211111 2389999999998
No 50
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=90.68 E-value=2.6 Score=37.01 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhccC-CCCCcccCC--------CCCcc------ccHHHHHHHHHhCC-CCCCCC---HHHHHHHHH
Q 048279 26 IVTNTLRRALSYHSTLQA-HDGHWPGDY--------GGPMF------LMPGLVITLSITGA-LNAVLS---EEHKKEMCR 86 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q~-~DG~W~g~~--------~~~~~------~ta~~v~~l~~~g~-~~~~~~---~~~~~~~~~ 86 (202)
-++.|++....+...++. ++|-|.-.+ ...+. ....++.++..+.. .+.+.. .+..++.++
T Consensus 191 y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~ 270 (382)
T 3pmm_A 191 YVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIA 270 (382)
T ss_dssp HHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHH
Confidence 467788888888888885 689986532 11112 12233334444321 010000 135678899
Q ss_pred HHHhhccCCCCcccccCCC---CcccchHHHHHH-HHHc--CCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 87 YVYNHQNRDGGWGLHIEGP---STMFGSVLNYVT-LRLL--GEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 87 ~L~~~Q~~DGgWg~~~~g~---s~v~~T~~ay~A-L~l~--G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
++.++|.+||-|-...+.+ -+.|+|+..-+| |+.. |.-+. .-.+...||.+-|.++
T Consensus 271 ~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~------~Y~~~a~ka~~~l~~~ 332 (382)
T 3pmm_A 271 ALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQ------HYAGVAEKAIRGIVQN 332 (382)
T ss_dssp HHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCG------GGHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHhh
Confidence 9999999999999765543 366777774444 3333 32111 1233777888888764
No 51
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=90.30 E-value=0.053 Score=56.43 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCC--CCCH-------HHHHHHHHHHHhhccCCCCcccccC
Q 048279 33 RALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNA--VLSE-------EHKKEMCRYVYNHQNRDGGWGLHIE 103 (202)
Q Consensus 33 ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~--~~~~-------~~~~~~~~~L~~~Q~~DGgWg~~~~ 103 (202)
+.+++|.+. | .||.|-+|...+..+++++.+...+. .... ..++++.+.+++.|++||||+.+.+
T Consensus 981 ~~L~~Ll~~--P----yGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~ 1054 (1642)
T 3prx_B 981 SKLNHLIIT--P----SGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTN 1054 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHhc--C----CCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCC
Confidence 678888765 3 34555555555555555554432110 0101 2455667788889999999999866
Q ss_pred CCCcccchHHHHHHHHHcC---CCCCCCCCCCCchhHHHHHHHHHHH
Q 048279 104 GPSTMFGSVLNYVTLRLLG---EGANDGRGANDGRGAMERGRSWILE 147 (202)
Q Consensus 104 g~s~v~~T~~ay~AL~l~G---~~~~~p~~~~~~~~~l~ra~~wI~~ 147 (202)
.+++.-.||.++-.|..+. ...+.. .+.+|.+||.+
T Consensus 1055 ~~~stWLTAyV~k~f~~A~~~i~~Vd~~--------~l~~~~~wL~~ 1093 (1642)
T 3prx_B 1055 RASSSWLTAYVVKVFAMAAKMVAGISHE--------IICGGVRWLIL 1093 (1642)
T ss_dssp -----------------------------------------------
T ss_pred CCCccccHHHHHHHHHHHHhhccCCCHH--------HHHHHHHHHHh
Confidence 6666677777666554443 112222 89999999986
No 52
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=86.29 E-value=4.3 Score=38.28 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhccCC--CCCcccCCCC------------Cccc----c-HHHHHHHHHhCCCCCCCCHHHHHHHHHH
Q 048279 27 VTNTLRRALSYHSTLQAH--DGHWPGDYGG------------PMFL----M-PGLVITLSITGALNAVLSEEHKKEMCRY 87 (202)
Q Consensus 27 v~~ai~ra~~~L~~~Q~~--DG~W~g~~~~------------~~~~----t-a~~v~~l~~~g~~~~~~~~~~~~~~~~~ 87 (202)
..+.+.|++.-|+.+|.+ .|........ ++.+ + +..+.++-.+|. .+..++..+|
T Consensus 294 ~~~~~~rs~~~Lk~l~~~~~~G~iiAs~t~~~~e~~~~~~~~dY~~~W~RD~~~~~~al~~~G~------~~~a~~~l~~ 367 (684)
T 1lf6_A 294 ANSLYYNSMMILKASEDKTNKGAYIASLSIPWGDGQRDDNTGGYHLVWSRDLYHVANAFIAAGD------VDSANRSLDY 367 (684)
T ss_dssp CCHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBSBSCCGGGSBCHHHHHHHHHHHHHHTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccEEeecCCCCccccCCCCCCCCEEEeccHHHHHHHHHHHcCC------HHHHHHHHHH
Confidence 344566666667776653 5655332211 1111 1 223344545564 5677889999
Q ss_pred HHhhccCCCCcc--cccCC-----CCcccchHHHHHHHHHcCCCCCCCCCCCCchhH-HHHHHHHHHHcC
Q 048279 88 VYNHQNRDGGWG--LHIEG-----PSTMFGSVLNYVTLRLLGEGANDGRGANDGRGA-MERGRSWILEHG 149 (202)
Q Consensus 88 L~~~Q~~DGgWg--~~~~g-----~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~-l~ra~~wI~~~G 149 (202)
|.++|++||+|- ++.+| .-.+..|++.+.++..+.... .-+. ++++.+|+.++|
T Consensus 368 l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g--------~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 368 LAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD--------LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp HHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG--------GTTTTHHHHHHHHHHHC
T ss_pred HHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC--------chHHHHHHHHHHHHHhC
Confidence 999999999973 22222 234556666555544332211 1226 999999999987
No 53
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=85.21 E-value=3.2 Score=36.39 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCcccCCCC-Cccc----cHHHHHHH---HHhCCCCCCCCHHHHHHHHHHHHhhccCC
Q 048279 24 EDIVTNTLRRALSYHSTLQAHDGHWPGDYGG-PMFL----MPGLVITL---SITGALNAVLSEEHKKEMCRYVYNHQNRD 95 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~-~~~~----ta~~v~~l---~~~g~~~~~~~~~~~~~~~~~L~~~Q~~D 95 (202)
++.+.+.+++.++++.+.|.+||.|..-..- ..+. ++.++.++ ...|.++ ..-.+..+|+.+.|.++-++|
T Consensus 258 ~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~-~~Y~~~a~ka~~~l~~~i~~d 336 (382)
T 3pmm_A 258 RRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVG-QHYAGVAEKAIRGIVQNISPQ 336 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSC-GGGHHHHHHHHHHHHHTBCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHhhCCCC
Confidence 4578899999999999999999999853311 1222 22222222 1124333 123467889999999999999
Q ss_pred CCcc
Q 048279 96 GGWG 99 (202)
Q Consensus 96 GgWg 99 (202)
|--+
T Consensus 337 G~l~ 340 (382)
T 3pmm_A 337 GELL 340 (382)
T ss_dssp SCBC
T ss_pred CCEe
Confidence 9644
No 54
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=82.12 E-value=5.9 Score=34.25 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHhccCC-CCCcccCCC-----CCcc-c--cHHHHHHHHH---hCCCCCCCCHHHHHHHHHHHHhh
Q 048279 24 EDIVTNTLRRALSYHSTLQAH-DGHWPGDYG-----GPMF-L--MPGLVITLSI---TGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 24 ~~~v~~ai~ra~~~L~~~Q~~-DG~W~g~~~-----~~~~-~--ta~~v~~l~~---~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
.+.+.+..++.++++.+.|.+ ||.|...+. ++.. . ++.++.++.. .|-++ ..-.+..+|+.+.|.++
T Consensus 236 ~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~-~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 236 RHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLD-RAYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCc-HHHHHHHHHHHHHHHHh
Confidence 356888899999999999997 999984321 2211 1 2223333222 24333 22346788899999885
Q ss_pred ---ccCCC
Q 048279 92 ---QNRDG 96 (202)
Q Consensus 92 ---Q~~DG 96 (202)
.++||
T Consensus 315 ~~~~~~dG 322 (373)
T 1nc5_A 315 KTETSEDG 322 (373)
T ss_dssp HEEECTTS
T ss_pred ceeECCCC
Confidence 57888
No 55
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.07 E-value=2.7 Score=37.96 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=48.2
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCcccCC--CCCcc-c--cHHHHHHH---HHhCCCCCCCCHHHHHHHHHHHHhhccC
Q 048279 23 TEDIVTNTLRRALSYHSTLQAHDGHWPGDY--GGPMF-L--MPGLVITL---SITGALNAVLSEEHKKEMCRYVYNHQNR 94 (202)
Q Consensus 23 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~--~~~~~-~--ta~~v~~l---~~~g~~~~~~~~~~~~~~~~~L~~~Q~~ 94 (202)
.++.+.+.+++.++++.+.|.+||.|..-. ..+.. . ++.++.++ ...|.++...-.+..+++.+.|.++-++
T Consensus 288 ~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~ 367 (445)
T 3k11_A 288 QRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINE 367 (445)
T ss_dssp THHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 356788999999999999999999998532 22211 1 22222222 1234332101124678899999999999
Q ss_pred CCC
Q 048279 95 DGG 97 (202)
Q Consensus 95 DGg 97 (202)
||-
T Consensus 368 dG~ 370 (445)
T 3k11_A 368 EGQ 370 (445)
T ss_dssp TSC
T ss_pred CCC
Confidence 984
No 56
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=77.19 E-value=4.7 Score=34.90 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhccC-CCCcccccCC------CCcccchHHHHHHH-HH--cCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 80 HKKEMCRYVYNHQNR-DGGWGLHIEG------PSTMFGSVLNYVTL-RL--LGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~-DGgWg~~~~g------~s~v~~T~~ay~AL-~l--~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
..++.++++.++|.+ ||-|-...+. .-+.|+|++..++| +. .|.-++ .-.+.+.|+.+.|.++
T Consensus 242 ~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~------~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 242 TLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDR------AYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCG------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcH------HHHHHHHHHHHHHHHh
Confidence 456788999999997 9999843322 24567777744444 33 253211 1234788898888774
No 57
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=76.18 E-value=34 Score=33.93 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHhccCCC--CCcccCCCC-------------Cccc----cH-HHHHHHHHhCCCCCCCCHHHHHHH
Q 048279 25 DIVTNTLRRALSYHSTLQAHD--GHWPGDYGG-------------PMFL----MP-GLVITLSITGALNAVLSEEHKKEM 84 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~D--G~W~g~~~~-------------~~~~----ta-~~v~~l~~~g~~~~~~~~~~~~~~ 84 (202)
....+.++|++--|+.++.+. |.-...-.. .+.+ ++ ..+.++-.+|. .+..++.
T Consensus 280 ~~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~------~e~A~~~ 353 (1020)
T 1ulv_A 280 GALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGD------EEAAARG 353 (1020)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCC------HHHHHHH
Confidence 456777888888888888653 444322111 1222 22 22334445564 5678889
Q ss_pred HHHHHhhc-cCCCCcccc--cCC-----CCcccchHHHHHHHHHcCCCCCCCCCCCCchh-HHHHHHHHHHHcC
Q 048279 85 CRYVYNHQ-NRDGGWGLH--IEG-----PSTMFGSVLNYVTLRLLGEGANDGRGANDGRG-AMERGRSWILEHG 149 (202)
Q Consensus 85 ~~~L~~~Q-~~DGgWg~~--~~g-----~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~-~l~ra~~wI~~~G 149 (202)
.+||.+.| ++||.|-.. .++ .-++..|.+.+.++...... + ...-+ .++++.+||.++|
T Consensus 354 l~~L~~~Q~~~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~~--d----~~~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 354 VEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRT--D----AGFYRNELKPAADYLVAAG 421 (1020)
T ss_dssp HHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCC--C----HHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHHHhC
Confidence 99999999 999987532 222 12556777776666554332 1 12233 7899999999987
No 58
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=62.38 E-value=27 Score=30.55 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCccc
Q 048279 23 TEDIVTNTLRRALSYHSTLQAHDGHWPG 50 (202)
Q Consensus 23 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g 50 (202)
..+...+.++++++|+.+.|.++|.|+.
T Consensus 248 ~~~~~~~~i~~~l~~l~~~~~~~g~wp~ 275 (411)
T 3e6u_A 248 SQGKLHSLVKPSVDYVCQLKFPSGNYPP 275 (411)
T ss_dssp CHHHHHHTHHHHHHHHHHTCCTTSCCCS
T ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 3567889999999999999999999986
No 59
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=58.86 E-value=8.7 Score=34.58 Aligned_cols=117 Identities=9% Similarity=0.068 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhcc-CCCCCcccCC------CCC-ccc------cHHHHHHHHHhCCCCCCCCH---HHHHHHHHHH
Q 048279 26 IVTNTLRRALSYHSTLQ-AHDGHWPGDY------GGP-MFL------MPGLVITLSITGALNAVLSE---EHKKEMCRYV 88 (202)
Q Consensus 26 ~v~~ai~ra~~~L~~~Q-~~DG~W~g~~------~~~-~~~------ta~~v~~l~~~g~~~~~~~~---~~~~~~~~~L 88 (202)
-++.|++....+...++ .++|-|...+ ..+ ... ...++.++..+.... +... +..++.++++
T Consensus 225 y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~-~~r~~l~~~~~~~a~~l 303 (445)
T 3k11_A 225 YLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDY-PQRPKVMDYFRAHVRGV 303 (445)
T ss_dssp HHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTC-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHH
Confidence 36667777666666666 4578775321 111 121 222333344433211 1111 4567789999
Q ss_pred HhhccCCCCcccccCCC---CcccchHHHHHHH-HHc--CCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 89 YNHQNRDGGWGLHIEGP---STMFGSVLNYVTL-RLL--GEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 89 ~~~Q~~DGgWg~~~~g~---s~v~~T~~ay~AL-~l~--G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
.++|.+||-|-...+.+ -+.|+|+...+|| +.+ |.-... .-.++..||.+.|.++
T Consensus 304 ~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~-----~Y~~~A~ka~~~L~~~ 364 (445)
T 3k11_A 304 TALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAI-----AYGPVAQLGWHAVAGK 364 (445)
T ss_dssp HTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHH-----HHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHHHHHh
Confidence 99999999998765443 3567777743333 333 321100 0112667777777653
No 60
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=50.05 E-value=25 Score=34.87 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcc-CCCCCcccCCC--C-C------ccccHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHhhcc--CCC
Q 048279 30 TLRRALSYHSTLQ-AHDGHWPGDYG--G-P------MFLMPGLVITLSITGALNAVLSEE-HKKEMCRYVYNHQN--RDG 96 (202)
Q Consensus 30 ai~ra~~~L~~~Q-~~DG~W~g~~~--~-~------~~~ta~~v~~l~~~g~~~~~~~~~-~~~~~~~~L~~~Q~--~DG 96 (202)
..++.++||.+.| ++||+|.-.+. + + .-.++..+++++.....+... -+ .++++++|+.++-+ ..|
T Consensus 349 ~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~~d~~~-w~~~v~~al~~i~~~g~~~~~~ 427 (1020)
T 1ulv_A 349 AAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGF-YRNELKPAADYLVAAGPKTPQE 427 (1020)
T ss_dssp HHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHH-HHHTHHHHHHHHHHHCSCBSBC
T ss_pred HHHHHHHHHHHHhcCCCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHhCCCCChh
Confidence 3578899999999 89999865431 1 1 112344555554443322001 13 68899999999743 234
Q ss_pred CcccccCCCCcccchHHHHHHHHHc
Q 048279 97 GWGLHIEGPSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 97 gWg~~~~g~s~v~~T~~ay~AL~l~ 121 (202)
=|.... ....++.+.+|.||+.+
T Consensus 428 ~WEe~~--g~~~~t~~~~~~AL~~a 450 (1020)
T 1ulv_A 428 RWEETG--GYSTSTLASQIAALAAA 450 (1020)
T ss_dssp TTSSCC--BEEHHHHHHHHHHHHHH
T ss_pred hhcccC--CcCHHHHHHHHHHHHHH
Confidence 455432 23567778888888544
No 61
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=46.51 E-value=21 Score=33.47 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhccCCCCCcccCC---CCCc----c--ccHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHhhcc--CCC
Q 048279 29 NTLRRALSYHSTLQAHDGHWPGDY---GGPM----F--LMPGLVITLSITGALNAVLSEEH-KKEMCRYVYNHQN--RDG 96 (202)
Q Consensus 29 ~ai~ra~~~L~~~Q~~DG~W~g~~---~~~~----~--~ta~~v~~l~~~g~~~~~~~~~~-~~~~~~~L~~~Q~--~DG 96 (202)
+..++.++||.+.|.+||.|...+ +.+. - .++..+++++.+...+ + -+. ++++++|+.++-+ ..|
T Consensus 359 ~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g--~-~~~~v~~al~~i~~~~~~~~~g 435 (684)
T 1lf6_A 359 DSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD--L-YDSLVKPLADFIIKIGPKTGQE 435 (684)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG--G-TTTTHHHHHHHHHHHCSSBSSC
T ss_pred HHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC--c-hHHHHHHHHHHHHHhCCCCCcc
Confidence 346778999999999999875432 1111 1 2334444444443321 1 245 8999999999743 235
Q ss_pred CcccccCCCCcccchHHHHHHHHHc
Q 048279 97 GWGLHIEGPSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 97 gWg~~~~g~s~v~~T~~ay~AL~l~ 121 (202)
=|... +..+.++.+.+|.||+.+
T Consensus 436 ~WE~~--~g~~~~t~~~~~~aL~~~ 458 (684)
T 1lf6_A 436 RWEEI--GGYSPATMAAEVAGLTCA 458 (684)
T ss_dssp TTSSC--CBBCHHHHHHHHHHHHHH
T ss_pred ccccc--CCcCHHHHHHHHHHHHHH
Confidence 56643 233467777888888554
No 62
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.59 E-value=33 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCC
Q 048279 61 GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRD 95 (202)
Q Consensus 61 ~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~D 95 (202)
...-+|+..+. -++++++||.+|..+.
T Consensus 35 qA~kALKat~~--------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGE--------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCS--------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCC--------CHHHHHHHHHhCCCCC
Confidence 34456666664 2788999999988764
No 63
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=40.27 E-value=48 Score=27.95 Aligned_cols=91 Identities=16% Similarity=0.351 Sum_probs=48.7
Q ss_pred HHHHHH-HHHHHHH-HhccCCCCCcccCCC--CC-------ccccHHHHHHHHH-----hCCCCCCCCHHHHHHHHHHHH
Q 048279 26 IVTNTL-RRALSYH-STLQAHDGHWPGDYG--GP-------MFLMPGLVITLSI-----TGALNAVLSEEHKKEMCRYVY 89 (202)
Q Consensus 26 ~v~~ai-~ra~~~L-~~~Q~~DG~W~g~~~--~~-------~~~ta~~v~~l~~-----~g~~~~~~~~~~~~~~~~~L~ 89 (202)
++..-+ ++.+.|. ...+.++|.+...+. +. .+..+.++.++.. +|. +.-.+..+++++||.
T Consensus 11 ~~~~~l~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~---~~~~~~A~~~~~~l~ 87 (388)
T 2gz6_A 11 LYKNALLNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKR---ENWLKIARNGAKFLA 87 (388)
T ss_dssp HHHHHHHHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Confidence 344444 5678887 445555777644322 11 1123334433322 232 112356788899999
Q ss_pred hh-ccCCCCccccc--CC-----CCcccchHHHHHHHH
Q 048279 90 NH-QNRDGGWGLHI--EG-----PSTMFGSVLNYVTLR 119 (202)
Q Consensus 90 ~~-Q~~DGgWg~~~--~g-----~s~v~~T~~ay~AL~ 119 (202)
++ +.+||||--.. +| ...++.-+.+..||.
T Consensus 88 ~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~ 125 (388)
T 2gz6_A 88 QHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFS 125 (388)
T ss_dssp HHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHH
Confidence 98 77899986443 22 234455555555553
No 64
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=37.74 E-value=83 Score=26.42 Aligned_cols=71 Identities=13% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhc-cCCCCCcccCC--CC-------CccccHHHHHHH----HHhCCCCCCCCHHHHHHHHHHHHh
Q 048279 25 DIVTNTLRRALSYHSTL-QAHDGHWPGDY--GG-------PMFLMPGLVITL----SITGALNAVLSEEHKKEMCRYVYN 90 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~-Q~~DG~W~g~~--~~-------~~~~ta~~v~~l----~~~g~~~~~~~~~~~~~~~~~L~~ 90 (202)
+...++++++++||.+. +.+||.|.... .+ ..+-.+.++.++ ..+|.. .--+..+++.+++.+
T Consensus 73 ~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~---~~l~~A~~~~~~i~~ 149 (388)
T 2gz6_A 73 ENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEE---WAKDVAMQAYNNVLR 149 (388)
T ss_dssp HHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 45677889999999998 67789887432 11 222334444443 234431 011345566778888
Q ss_pred hccC-CCCc
Q 048279 91 HQNR-DGGW 98 (202)
Q Consensus 91 ~Q~~-DGgW 98 (202)
+... +|.|
T Consensus 150 ~~~d~~g~~ 158 (388)
T 2gz6_A 150 RKDNPKGKY 158 (388)
T ss_dssp C--------
T ss_pred HhcCCCccc
Confidence 7643 3443
No 65
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=37.57 E-value=17 Score=26.77 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcc-CCCCcccc-cCCCCccc------c--hHHHHHHHHHcCCCCCCCC
Q 048279 60 PGLVITLSITGALNAVLSEEHKKEMCRYVYNHQN-RDGGWGLH-IEGPSTMF------G--SVLNYVTLRLLGEGANDGR 129 (202)
Q Consensus 60 a~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~-~DGgWg~~-~~g~s~v~------~--T~~ay~AL~l~G~~~~~p~ 129 (202)
....-+++..|. + .+++..||..|+. .|-|.-.- .+.+-+++ . .-..+..|.-+|.+.+...
T Consensus 23 ~~~~kAl~~~g~-~-------~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~ 94 (118)
T 4ae4_A 23 ECVLRAMKAAGA-N-------IEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIK 94 (118)
T ss_dssp HHHHHHHHHHCS-C-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCc-C-------HHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHH
Confidence 334457777775 3 5778999999974 22222100 00000000 0 1123566666775443100
Q ss_pred CC-CCchhHHHHHHHHHHHcCCC
Q 048279 130 GA-NDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 130 ~~-~~~~~~l~ra~~wI~~~GG~ 151 (202)
.. -..+--+.||.+||.+.-|+
T Consensus 95 ~AL~~~~nd~erAlewL~~~~~~ 117 (118)
T 4ae4_A 95 EVLLLHNNDQDNALEDLMARAGA 117 (118)
T ss_dssp HHHHHTTTCHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHhccc
Confidence 00 00000478899999988664
No 66
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.45 E-value=43 Score=20.00 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=18.9
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
+..-.|..||+..| + +.+|.+||.+|
T Consensus 21 F~~~~a~~AL~~~~----n----------~e~A~~~L~~h 46 (47)
T 2ekk_A 21 FTREHAMEALLNTS----T----------MEQATEYLLTH 46 (47)
T ss_dssp CCHHHHHHHHHHSC----S----------HHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcC----C----------HHHHHHHHHcC
Confidence 34556777888873 2 68899999876
No 67
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=33.90 E-value=1.1e+02 Score=26.26 Aligned_cols=93 Identities=12% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHH-hccCCCCCcccCC--CCCcc--------ccHHHHHHH----HHhCCCCCCCCHHHHHHHHHHHH
Q 048279 25 DIVTNTLRRALSYHS-TLQAHDGHWPGDY--GGPMF--------LMPGLVITL----SITGALNAVLSEEHKKEMCRYVY 89 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~-~~Q~~DG~W~g~~--~~~~~--------~ta~~v~~l----~~~g~~~~~~~~~~~~~~~~~L~ 89 (202)
.=+.+.+++.+.|-. ..+.++|.+...+ .+... ..+-++.++ ..+|. +.-.+..+++++||.
T Consensus 9 ~~l~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~---~~~l~~A~~~~~fl~ 85 (402)
T 3gt5_A 9 DFLRTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGT---AEYLDAVHHGLSYVR 85 (402)
T ss_dssp HHHHHHHHHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCC---hHHHHHHHHHHHHHH
Confidence 346677889999864 4566788886532 22221 233343333 23443 111345678899998
Q ss_pred hh-ccCC-CCccccc-CC-----CCcccchHHHHHHHHH
Q 048279 90 NH-QNRD-GGWGLHI-EG-----PSTMFGSVLNYVTLRL 120 (202)
Q Consensus 90 ~~-Q~~D-GgWg~~~-~g-----~s~v~~T~~ay~AL~l 120 (202)
++ ..++ |||.-.. +| +..++.-+.++.||..
T Consensus 86 ~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~ 124 (402)
T 3gt5_A 86 DVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSC 124 (402)
T ss_dssp HTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHH
T ss_pred HhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHH
Confidence 85 4456 8886432 22 2344555555555543
No 68
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.28 E-value=41 Score=23.23 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=21.2
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
+....|..||+..+- -+.||.+||.+|+|
T Consensus 41 F~~~~A~~AL~~t~g-------------dve~A~e~L~sh~~ 69 (83)
T 1veg_A 41 FDTVVAEAALRVFGG-------------NVQLAAQTLAHHGG 69 (83)
T ss_dssp CCHHHHHHHHHHTTT-------------CHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHcCC-------------CHHHHHHHHHhCCC
Confidence 345556677777642 37999999999977
No 69
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.92 E-value=53 Score=21.16 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCCC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGGA 151 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG~ 151 (202)
+....|..||+..|-. -+++|.+||++|..-
T Consensus 21 F~~~~a~~AL~~t~~~------------nve~A~ewLl~~~~d 51 (64)
T 1whc_A 21 FPRGRAEKALALTGNQ------------GIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCHHHHHHHHHHHTSC------------CHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhcCC------------CHHHHHHHHHhCCCC
Confidence 4556778888877421 379999999998643
No 70
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.58 E-value=32 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccCCCC
Q 048279 31 LRRALSYHSTLQAHDG 46 (202)
Q Consensus 31 i~ra~~~L~~~Q~~DG 46 (202)
|++|++||.+.+..+|
T Consensus 48 ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 48 TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHhCCCccC
Confidence 6789999999988776
No 71
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.99 E-value=77 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccC
Q 048279 61 GLVITLSITGALNAVLSEEHKKEMCRYVYNHQNR 94 (202)
Q Consensus 61 ~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~ 94 (202)
...-+|+..+.. -+++++.||.+|+.+
T Consensus 35 ~a~~AL~~t~~~-------nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 35 RAQKALASTGGR-------SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHTTTS-------CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHcCCC-------CHHHHHHHHHhCCCC
Confidence 344566666531 157889999999875
No 72
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=28.87 E-value=56 Score=20.16 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=20.5
Q ss_pred chHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 110 GSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 110 ~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
..-.+..||+..+- -+.+|.+||.+++
T Consensus 25 ~~~~~~~AL~~t~g-------------nve~Ave~L~~~~ 51 (53)
T 2knz_A 25 NREANLQALIATGG-------------DINAAIERLLGSQ 51 (53)
T ss_dssp CHHHHHHHHHHHTS-------------CHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhCC-------------CHHHHHHHHHHcC
Confidence 44567888888743 3799999999875
No 73
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=28.65 E-value=5 Score=26.10 Aligned_cols=13 Identities=23% Similarity=0.739 Sum_probs=10.9
Q ss_pred HHHhhccCCCCcc
Q 048279 87 YVYNHQNRDGGWG 99 (202)
Q Consensus 87 ~L~~~Q~~DGgWg 99 (202)
+|-..|++||.|.
T Consensus 12 ~I~~s~RpDGT~R 24 (58)
T 1rk8_C 12 FIPATKRPDGTWR 24 (58)
T ss_dssp EECCEECTTSCEE
T ss_pred EcccccCCCCccc
Confidence 5667899999996
No 74
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=28.16 E-value=70 Score=29.14 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhccCCC---CCcccC-------------------------------------CCCCc
Q 048279 17 KDTEDVTEDIVTNTLRRALSYHSTLQAHD---GHWPGD-------------------------------------YGGPM 56 (202)
Q Consensus 17 ~~~~~~~~~~v~~ai~ra~~~L~~~Q~~D---G~W~g~-------------------------------------~~~~~ 56 (202)
+|.+-.+. ...++++++++++..+|+++ |.|... ++--+
T Consensus 197 gD~~~f~~-~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGLi~S~fRPSDDa~~yg~~i 275 (489)
T 2p0v_A 197 GDASVFSD-EWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGLIASAFRPSDDATTFQFLV 275 (489)
T ss_dssp CCCTTSSH-HHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSCCCCSBCTTSCBCSSSEEH
T ss_pred CCchhhHH-HHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCceeCCCCCCCcchhcCcch
Q ss_pred cccHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHh-------hccCCCC--cccccCCCCcc----cchHHHHHHH
Q 048279 57 FLMPGLVITLSITGALNAVLS-----EEHKKEMCRYVYN-------HQNRDGG--WGLHIEGPSTM----FGSVLNYVTL 118 (202)
Q Consensus 57 ~~ta~~v~~l~~~g~~~~~~~-----~~~~~~~~~~L~~-------~Q~~DGg--Wg~~~~g~s~v----~~T~~ay~AL 118 (202)
.....++.+|..+...-..+. .+..++..+-|.+ ..++.+| +..-.+|-++. .+-+-.+++|
T Consensus 276 pSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~ifAyEVDG~G~~~~mDDanvpSLLsl 355 (489)
T 2p0v_A 276 PSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIYAFEVDGFGNQLLMDDANVPSLIAL 355 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEECSEECSSSCEECCCCSSSSCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEEEEEecCCCCcccCCCCCccHHHHH
Q ss_pred HHcC-CCCCCCCCCCCchhHHHHHHHHHHHc
Q 048279 119 RLLG-EGANDGRGANDGRGAMERGRSWILEH 148 (202)
Q Consensus 119 ~l~G-~~~~~p~~~~~~~~~l~ra~~wI~~~ 148 (202)
=++| .+++|| ..++-|++|++.
T Consensus 356 PylG~~~~dDp--------iy~nTr~~IlS~ 378 (489)
T 2p0v_A 356 PYLGDVKVTDP--------IYQNTRKFVWSE 378 (489)
T ss_dssp HHHTSSCTTCH--------HHHHHHHHHTST
T ss_pred HHhCCCCCCCH--------HHHHHHHHHHhh
No 75
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=27.55 E-value=1.2e+02 Score=29.46 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhccCCCCCcccCCCCC-----ccccHHHHHHH----HHhCCCCCCCC--HHHHHHHHHHHHhhccCCCCc
Q 048279 30 TLRRALSYHSTLQAHDGHWPGDYGGP-----MFLMPGLVITL----SITGALNAVLS--EEHKKEMCRYVYNHQNRDGGW 98 (202)
Q Consensus 30 ai~ra~~~L~~~Q~~DG~W~g~~~~~-----~~~ta~~v~~l----~~~g~~~~~~~--~~~~~~~~~~L~~~Q~~DGgW 98 (202)
-.++.++.+.+.|.+||.++...... ...+..+++++ ...|-.. .+. -+.++++++|+.++..+||-|
T Consensus 596 lar~~L~~l~~~Q~~dG~ip~~~p~~~~~~~~~~~~~~i~~~~~yy~~tGD~~-~L~e~yp~lk~~l~~~~~~~d~~GLl 674 (956)
T 2okx_A 596 IVERCLNLVPGSADETPLYLDQVPSAWSSVIPNWTFFWILACREYAAHTGNEA-FAARIWPAVKHTLTHYLEHIDDSGLL 674 (956)
T ss_dssp HHHHHHHHGGGGTTTCTTCCSBSSCSSCCCCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHHHTTBCTTSSB
T ss_pred HHHHHHHHHHhhcccCCCcCccccccccCCCcChHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 35677888889999999987533210 01111122222 1123210 011 146778899999887777643
No 76
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=27.35 E-value=2.6e+02 Score=24.11 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhccCCCCc--ccc-c---CCCCcccchHHHHHHHHHcC
Q 048279 80 HKKEMCRYVYNHQNRDGGW--GLH-I---EGPSTMFGSVLNYVTLRLLG 122 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGgW--g~~-~---~g~s~v~~T~~ay~AL~l~G 122 (202)
..+++++|+.++..+||++ -.. + ..+-+.|+++.+..+|..+.
T Consensus 245 ~A~~la~~~l~~~~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~ 293 (377)
T 2ahf_A 245 TAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIA 293 (377)
T ss_dssp HHHHHHHHHHTTCCTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHH
Confidence 4567789999999888983 211 1 12346677777666665443
No 77
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=27.25 E-value=88 Score=26.66 Aligned_cols=129 Identities=8% Similarity=-0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCC----Cccc------------------CCCCCccccHHHHHHHHHhCCCC--CCCCHHH
Q 048279 25 DIVTNTLRRALSYHSTLQAHDG----HWPG------------------DYGGPMFLMPGLVITLSITGALN--AVLSEEH 80 (202)
Q Consensus 25 ~~v~~ai~ra~~~L~~~Q~~DG----~W~g------------------~~~~~~~~ta~~v~~l~~~g~~~--~~~~~~~ 80 (202)
....+.+++.+++|.+.+. +| +|.. .+-+-.-..++.+.+|....... .+...+.
T Consensus 153 ~~~~~~~~~~~~~l~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~ 231 (409)
T 2g0d_A 153 EQYDDLKILIINFLSNLTK-ENNGLISLYIKSENQMSQSESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSA 231 (409)
T ss_dssp GGGHHHHHHHHHHHHHTTS-CCSSSCTTCBCGGGSSSHHHHHHCTTCBEECCTTTSHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHh-cCCCCCceeecCCccccchhhhcCCCCCccCCchhhHHHHHHHHHHHHHhCCCChhHHHH
Q ss_pred HHHHHHHHHhhcc--CCCC-ccc----------------ccCCCCcccchHHHHHHHHHcCCCCCCCCCCCCchhHHHHH
Q 048279 81 KKEMCRYVYNHQN--RDGG-WGL----------------HIEGPSTMFGSVLNYVTLRLLGEGANDGRGANDGRGAMERG 141 (202)
Q Consensus 81 ~~~~~~~L~~~Q~--~DGg-Wg~----------------~~~g~s~v~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra 141 (202)
++++++|+.+.+. ++|. |.. ....++=-.+++=...++..++....++ ...+.++++
T Consensus 232 ~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~d~----~~~~~a~~~ 307 (409)
T 2g0d_A 232 LQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDND----YFVDKAEKI 307 (409)
T ss_dssp HHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTTCH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCCCCCCcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHH
Q ss_pred HHHHHHcCCCcchhhHH
Q 048279 142 RSWILEHGGATALTSWG 158 (202)
Q Consensus 142 ~~wI~~~GG~~~~~~~~ 158 (202)
.+.+.+.++....+.++
T Consensus 308 ~~~~~~~~~~~~~~~LC 324 (409)
T 2g0d_A 308 LESAMQRKLGIDSYMIC 324 (409)
T ss_dssp HHHHHHHCTTCCSCCTT
T ss_pred HHHHHHhccCCCCCCCC
No 78
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=26.39 E-value=43 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHhhccCC
Q 048279 75 VLSEEHKKEMCRYVYNHQNRD 95 (202)
Q Consensus 75 ~~~~~~~~~~~~~L~~~Q~~D 95 (202)
.++++.++.+++||.+.++.+
T Consensus 67 ~ls~~ei~~l~~yl~~~~~~~ 87 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYDQASGD 87 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHccCC
Confidence 467888999999999988755
No 79
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=26.09 E-value=21 Score=25.10 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHhhccC-CCCcc
Q 048279 75 VLSEEHKKEMCRYVYNHQNR-DGGWG 99 (202)
Q Consensus 75 ~~~~~~~~~~~~~L~~~Q~~-DGgWg 99 (202)
.++++.++.+++||.+.... +++||
T Consensus 104 ~Ls~~ei~~l~~Yl~~l~~~~~~~w~ 129 (129)
T 1f1c_A 104 NISEDDLYNVAGYILLQPKVRGEQWG 129 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHcCccccccCC
Confidence 47888999999999997764 46686
No 80
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.96 E-value=90 Score=20.12 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=20.0
Q ss_pred cHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccC
Q 048279 59 MPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNR 94 (202)
Q Consensus 59 ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~ 94 (202)
.....-+|+..+..+ ++.|+.||++|+.+
T Consensus 23 ~~~a~~AL~~t~n~~-------~e~A~~wL~~h~~d 51 (64)
T 2crn_A 23 VHTALKALAATGRKT-------AEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHHTSCC-------HHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHhCCCC
Confidence 344555777776422 57789999999874
No 81
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=23.92 E-value=81 Score=20.88 Aligned_cols=29 Identities=21% Similarity=0.579 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 109 FGSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 109 ~~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
+..-.|..||+..+- -+.+|.+||.++.+
T Consensus 41 F~~~~a~~AL~~t~~-------------nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 41 FAEDVARKALKASGG-------------DIEKATDWVFNNSG 69 (73)
T ss_dssp CCHHHHHHHHHHTTS-------------CHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhCC-------------CHHHHHHHHHhCCC
Confidence 345556777877642 37899999998864
No 82
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=22.91 E-value=1.4e+02 Score=26.22 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=28.0
Q ss_pred cCCCCCCCCcccccCCCCCChHHHHHHHHHHHHHHHhc
Q 048279 4 ENPGVRVLPQVKVKDTEDVTEDIVTNTLRRALSYHSTL 41 (202)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~ 41 (202)
+......+-+.+......++.+.++++|+++++-+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 42 (397)
T 2zzr_A 5 PVKVESIENPKRFLNSRLLTKIEVEEAIEKALKQLYIN 42 (397)
T ss_dssp CCCCCCCSSTHHHHTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcChhhhccccccCHHHHHHHHHHHHHHHHHH
Confidence 34445555556666677899999999999998887664
No 83
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.66 E-value=89 Score=19.43 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcCC
Q 048279 113 LNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHGG 150 (202)
Q Consensus 113 ~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~GG 150 (202)
.+..||+..+- -+.+|++||.+++.
T Consensus 26 ~n~~AL~~~~G-------------dv~~Ave~L~~~~~ 50 (54)
T 2dah_A 26 ANLQALIATGG-------------DVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHHHTS-------------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCC-------------CHHHHHHHHHhCCC
Confidence 45667776632 38999999998864
No 84
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=22.38 E-value=41 Score=24.46 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcc
Q 048279 75 VLSEEHKKEMCRYVYNHQNRDGGWG 99 (202)
Q Consensus 75 ~~~~~~~~~~~~~L~~~Q~~DGgWg 99 (202)
.++++.++.+++||.+..+..-+||
T Consensus 106 ~Lsd~ei~~laaYl~~~~~~~~~w~ 130 (135)
T 1e29_A 106 NYTEDDIFDVAGYTLIAPKLDERWG 130 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCHHHHHHHHHHHHhccCcCCCCC
Confidence 3678899999999998877666898
No 85
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=22.21 E-value=98 Score=29.14 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhccCCCC-------cc--cccCCCCcccchHHHHHHHHHc
Q 048279 80 HKKEMCRYVYNHQNRDGG-------WG--LHIEGPSTMFGSVLNYVTLRLL 121 (202)
Q Consensus 80 ~~~~~~~~L~~~Q~~DGg-------Wg--~~~~g~s~v~~T~~ay~AL~l~ 121 (202)
+++++++|+.++..+||= |. +..+..-.+..+++.|.||+.+
T Consensus 465 ~~~~~~~~~~~~~~~~GL~~~~~~DW~D~~~~~~g~~v~~~a~~y~al~~~ 515 (807)
T 1v7w_A 465 HMKAALDFSAEYVGQTGICKGLRADWNDCLNLGGGESSMVSFLHFWALQEF 515 (807)
T ss_dssp HHHHHHHHHHHSBCTTSCBEEETCSSSTTCCCEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCcCCCCCCeehhHHHHHHHHHHHH
Confidence 488999999998777764 42 1111111244567777777654
No 86
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=62 Score=20.64 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=18.9
Q ss_pred chHHHHHHHHHcCCCCCCCCCCCCchhHHHHHHHHHHHcC
Q 048279 110 GSVLNYVTLRLLGEGANDGRGANDGRGAMERGRSWILEHG 149 (202)
Q Consensus 110 ~T~~ay~AL~l~G~~~~~p~~~~~~~~~l~ra~~wI~~~G 149 (202)
..-.|..||+..+- -+.+|.+||.+|.
T Consensus 22 ~~~~a~~AL~~t~~-------------nve~A~e~L~~~~ 48 (63)
T 2dak_A 22 SRDQALKALRATNN-------------SLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTTS-------------CSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------------CHHHHHHHHHhCC
Confidence 45567777877643 2588899999874
No 87
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=20.95 E-value=2.1e+02 Score=19.59 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=39.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhhccCCCCc
Q 048279 19 TEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNHQNRDGGW 98 (202)
Q Consensus 19 ~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~Q~~DGgW 98 (202)
++.|.-.++++||++-++|--+. .-.++-++...|. .++-++.-|+++|...|+=
T Consensus 6 rssvnhrevdeaidnilrytnst-----------------eqqfleamestgg--------rvriaiakllskqtsggsg 60 (104)
T 2l3n_A 6 RSSVNHREVDEAIDNILRYTNST-----------------EQQFLEAMESTGG--------RVRIAIAKLLSKQTSGGSG 60 (104)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCC-----------------HHHHHHHHHHHTT--------CHHHHHHHHHTTSCCCCSS
T ss_pred hhhcchhHHHHHHHHHHHhccch-----------------HHHHHHHHHhcCC--------eeehHHHHHHhhccCCCCC
Confidence 34566778999999988874321 2344556666664 2455788899999988775
Q ss_pred ccccC
Q 048279 99 GLHIE 103 (202)
Q Consensus 99 g~~~~ 103 (202)
|-..+
T Consensus 61 gsklg 65 (104)
T 2l3n_A 61 GSKLG 65 (104)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 54433
No 88
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=20.14 E-value=98 Score=22.64 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=38.0
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhccCCCCCcccCCCCCccccHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhh
Q 048279 17 KDTEDVTEDIVTNTLRRALSYHSTLQAHDGHWPGDYGGPMFLMPGLVITLSITGALNAVLSEEHKKEMCRYVYNH 91 (202)
Q Consensus 17 ~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~ta~~v~~l~~~g~~~~~~~~~~~~~~~~~L~~~ 91 (202)
...-.+|..+|+++|+.|++..+...++|= + .-++...+......+-+.|.+..++++|+..
T Consensus 55 A~k~~TT~s~VEraIR~aIe~aw~~g~~~~-----------l--~~ifg~t~~~~~~kPTnsEFI~~iad~Lr~~ 116 (120)
T 1fc3_A 55 AKKYNTTASRVERAIRHAIEVAWSRGNLES-----------I--SSLFGYTVSVSKAKPTNSEFIAMVADKLRLE 116 (120)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHSSCTTT-----------T--HHHHCHHHHTCSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHCCCHHH-----------H--HHHHCCCcccCCCCCCHHHHHHHHHHHHHHH
Confidence 334457889999999999999988765441 1 1112222211112245567888888888754
Done!