Query 048281
Match_columns 660
No_of_seqs 667 out of 4041
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 08:05:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.1E-94 2.4E-99 806.9 72.6 616 27-654 182-797 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.2E-84 2.6E-89 709.2 65.5 554 93-654 81-635 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.6E-78 5.7E-83 675.3 59.3 543 26-582 80-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-65 2.5E-70 561.2 58.5 503 28-542 366-909 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 7.8E-66 1.7E-70 562.5 55.7 504 63-582 366-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.2E-64 4.8E-69 550.0 52.0 442 27-480 118-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8E-32 1.7E-36 308.7 60.5 530 29-578 326-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-31 3.7E-36 306.0 61.0 524 33-576 296-832 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-22 2.3E-27 233.6 60.7 521 36-579 116-744 (1157)
10 PRK11447 cellulose synthase su 99.9 1.7E-22 3.7E-27 231.9 57.8 522 35-577 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.2E-19 2.6E-24 198.9 54.1 513 43-577 55-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 3.8E-21 8.2E-26 186.7 37.2 437 108-565 57-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 4.1E-19 8.8E-24 194.8 55.0 520 34-577 8-673 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.1E-19 2.5E-24 176.5 30.1 418 139-577 53-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-18 7.1E-23 184.7 43.9 417 139-576 132-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 2.5E-17 5.5E-22 169.0 41.0 526 35-578 165-747 (1018)
17 PRK11788 tetratricopeptide rep 99.8 9.7E-19 2.1E-23 179.4 30.5 292 280-583 45-354 (389)
18 PRK10049 pgaA outer membrane p 99.8 1.3E-16 2.8E-21 175.4 46.3 393 140-576 21-456 (765)
19 PRK11788 tetratricopeptide rep 99.8 7.1E-18 1.5E-22 173.0 33.3 289 210-541 45-346 (389)
20 PRK15174 Vi polysaccharide exp 99.8 6.2E-17 1.3E-21 174.1 40.7 352 181-547 17-386 (656)
21 KOG2002 TPR-containing nuclear 99.8 4.4E-16 9.5E-21 160.0 41.0 522 40-578 207-800 (1018)
22 TIGR00990 3a0801s09 mitochondr 99.8 5.4E-16 1.2E-20 167.5 44.3 421 102-546 130-575 (615)
23 PRK15174 Vi polysaccharide exp 99.8 1.8E-16 3.9E-21 170.5 38.9 327 235-577 42-382 (656)
24 PRK14574 hmsH outer membrane p 99.8 2.9E-15 6.4E-20 161.3 44.8 435 109-576 44-513 (822)
25 PRK10049 pgaA outer membrane p 99.8 5.5E-15 1.2E-19 162.7 45.6 412 25-474 8-456 (765)
26 KOG4422 Uncharacterized conser 99.8 1.6E-14 3.4E-19 135.2 41.2 427 27-508 111-588 (625)
27 PRK14574 hmsH outer membrane p 99.8 1E-14 2.2E-19 157.2 45.3 440 75-548 42-519 (822)
28 KOG2003 TPR repeat-containing 99.8 4.1E-15 9E-20 139.9 30.8 272 278-562 427-709 (840)
29 KOG4422 Uncharacterized conser 99.7 5.9E-14 1.3E-18 131.4 36.6 346 98-492 115-479 (625)
30 KOG2076 RNA polymerase III tra 99.7 4E-12 8.6E-17 130.6 47.9 534 40-577 147-850 (895)
31 KOG0495 HAT repeat protein [RN 99.7 5.2E-12 1.1E-16 124.7 43.7 369 201-589 517-891 (913)
32 KOG0495 HAT repeat protein [RN 99.6 9.6E-11 2.1E-15 116.0 46.6 463 73-555 412-893 (913)
33 KOG2076 RNA polymerase III tra 99.6 1.1E-10 2.4E-15 120.1 45.0 349 78-437 150-553 (895)
34 PF13429 TPR_15: Tetratricopep 99.6 4.2E-15 9.1E-20 144.2 10.4 256 308-575 15-276 (280)
35 KOG0547 Translocase of outer m 99.6 6.6E-12 1.4E-16 120.0 31.2 412 104-575 120-565 (606)
36 KOG2003 TPR repeat-containing 99.6 2.2E-11 4.8E-16 115.1 31.0 451 105-575 207-688 (840)
37 KOG4318 Bicoid mRNA stability 99.6 1E-10 2.2E-15 119.8 37.8 521 26-586 19-603 (1088)
38 KOG1155 Anaphase-promoting com 99.6 2.9E-11 6.3E-16 115.0 31.6 194 379-575 330-535 (559)
39 KOG1915 Cell cycle control pro 99.5 9E-10 2E-14 105.2 40.6 492 65-573 71-622 (677)
40 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.2E-17 129.6 22.6 162 409-575 420-585 (638)
41 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 110.1 34.7 258 307-575 233-494 (559)
42 PRK10747 putative protoheme IX 99.5 6E-11 1.3E-15 120.5 33.6 285 213-542 97-390 (398)
43 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.3E-15 114.2 33.1 491 25-575 9-517 (611)
44 PRK10747 putative protoheme IX 99.5 1.9E-11 4.2E-16 124.1 29.3 275 283-575 97-389 (398)
45 KOG1915 Cell cycle control pro 99.5 2E-09 4.3E-14 102.9 39.4 460 98-574 72-583 (677)
46 KOG1126 DNA-binding cell divis 99.5 5E-12 1.1E-16 125.9 22.5 276 285-578 334-622 (638)
47 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.5E-15 119.1 33.5 290 212-541 96-398 (409)
48 TIGR00540 hemY_coli hemY prote 99.4 1.7E-10 3.7E-15 117.9 29.7 279 283-575 97-398 (409)
49 KOG4318 Bicoid mRNA stability 99.4 4.6E-10 1E-14 115.1 31.9 461 53-575 11-556 (1088)
50 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.8E-17 126.7 12.9 188 273-471 81-274 (280)
51 COG3071 HemY Uncharacterized e 99.4 1.4E-09 3E-14 102.3 31.4 287 213-542 97-390 (400)
52 KOG2047 mRNA splicing factor [ 99.4 1.3E-07 2.9E-12 94.1 43.8 302 249-562 361-709 (835)
53 KOG3785 Uncharacterized conser 99.4 5.9E-09 1.3E-13 96.0 31.9 176 395-582 339-520 (557)
54 COG2956 Predicted N-acetylgluc 99.4 1.3E-09 2.9E-14 99.2 27.2 267 213-522 48-324 (389)
55 KOG4162 Predicted calmodulin-b 99.4 4.9E-08 1.1E-12 99.5 40.9 400 164-577 318-784 (799)
56 TIGR02521 type_IV_pilW type IV 99.4 1.8E-10 3.8E-15 108.9 22.8 196 379-575 31-231 (234)
57 COG3071 HemY Uncharacterized e 99.3 1.6E-09 3.5E-14 101.9 27.4 277 283-575 97-389 (400)
58 KOG1840 Kinesin light chain [C 99.3 1.8E-09 3.8E-14 109.2 27.8 239 272-574 201-477 (508)
59 PF13041 PPR_2: PPR repeat fam 99.3 5.2E-12 1.1E-16 85.5 5.1 50 97-146 1-50 (50)
60 KOG0547 Translocase of outer m 99.3 4.4E-08 9.5E-13 94.4 32.6 219 310-543 335-567 (606)
61 KOG1174 Anaphase-promoting com 99.2 7.6E-08 1.6E-12 90.8 32.2 303 231-547 190-505 (564)
62 KOG2047 mRNA splicing factor [ 99.2 8.5E-07 1.8E-11 88.6 40.8 499 67-575 102-686 (835)
63 COG2956 Predicted N-acetylgluc 99.2 6.4E-09 1.4E-13 94.9 23.9 287 283-582 48-353 (389)
64 PF13041 PPR_2: PPR repeat fam 99.2 2.9E-11 6.4E-16 81.8 6.8 50 408-457 1-50 (50)
65 KOG2376 Signal recognition par 99.2 5E-07 1.1E-11 89.5 38.1 465 33-572 13-516 (652)
66 PRK12370 invasion protein regu 99.2 4.7E-09 1E-13 111.6 26.3 244 316-577 276-536 (553)
67 KOG1173 Anaphase-promoting com 99.2 1.7E-07 3.7E-12 92.3 32.3 262 283-556 257-532 (611)
68 TIGR02521 type_IV_pilW type IV 99.2 1.1E-08 2.4E-13 96.5 23.7 198 301-542 31-232 (234)
69 KOG3785 Uncharacterized conser 99.2 9.6E-07 2.1E-11 81.8 34.1 445 74-580 29-494 (557)
70 PRK12370 invasion protein regu 99.2 6.2E-09 1.3E-13 110.7 23.5 211 350-576 275-502 (553)
71 COG3063 PilF Tfp pilus assembl 99.1 5.7E-09 1.2E-13 91.0 18.1 164 412-578 37-204 (250)
72 KOG1129 TPR repeat-containing 99.1 1.7E-09 3.6E-14 98.5 15.4 225 305-577 227-459 (478)
73 KOG0624 dsRNA-activated protei 99.1 2.3E-07 4.9E-12 85.5 28.7 344 273-648 41-416 (504)
74 PRK11189 lipoprotein NlpI; Pro 99.1 1.1E-08 2.4E-13 99.3 21.8 193 379-578 64-267 (296)
75 KOG1156 N-terminal acetyltrans 99.1 6.6E-06 1.4E-10 82.7 40.7 470 34-572 10-507 (700)
76 KOG4162 Predicted calmodulin-b 99.1 1.1E-05 2.4E-10 82.8 42.3 430 109-548 294-789 (799)
77 KOG0985 Vesicle coat protein c 99.1 2.4E-06 5.1E-11 89.6 37.5 473 70-573 609-1246(1666)
78 PRK11189 lipoprotein NlpI; Pro 99.1 7E-08 1.5E-12 93.8 25.4 226 316-557 41-281 (296)
79 KOG1129 TPR repeat-containing 99.1 4.2E-09 9.2E-14 96.0 15.2 234 272-552 225-468 (478)
80 KOG1174 Anaphase-promoting com 99.1 4.8E-06 1E-10 79.0 35.0 384 168-576 96-500 (564)
81 PF12569 NARP1: NMDA receptor- 99.1 3.3E-06 7.2E-11 86.9 37.2 428 106-572 11-516 (517)
82 KOG1156 N-terminal acetyltrans 99.0 6.2E-06 1.3E-10 82.9 35.0 113 478-590 366-487 (700)
83 KOG3616 Selective LIM binding 99.0 3.3E-06 7.2E-11 85.5 33.1 262 277-577 739-1025(1636)
84 KOG1840 Kinesin light chain [C 99.0 1.2E-07 2.6E-12 96.2 23.1 237 135-403 200-474 (508)
85 KOG2376 Signal recognition par 99.0 9.4E-06 2E-10 80.7 34.3 408 106-576 19-487 (652)
86 KOG0548 Molecular co-chaperone 98.9 6E-06 1.3E-10 81.3 31.2 89 488-576 365-455 (539)
87 PF12569 NARP1: NMDA receptor- 98.9 1.1E-06 2.4E-11 90.4 27.7 283 278-574 12-332 (517)
88 KOG1125 TPR repeat-containing 98.9 3.7E-08 8E-13 97.2 15.7 219 346-575 295-526 (579)
89 KOG4340 Uncharacterized conser 98.9 1.4E-06 2.9E-11 79.0 24.2 410 136-576 12-443 (459)
90 COG3063 PilF Tfp pilus assembl 98.9 3.9E-07 8.4E-12 79.7 19.9 196 379-575 35-235 (250)
91 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.5E-12 90.8 18.2 159 382-547 105-270 (290)
92 KOG3616 Selective LIM binding 98.9 1.4E-05 3.1E-10 81.1 33.1 47 78-124 455-502 (1636)
93 KOG3617 WD40 and TPR repeat-co 98.9 1.4E-05 2.9E-10 82.4 33.3 402 64-530 723-1188(1416)
94 KOG0985 Vesicle coat protein c 98.9 4E-05 8.7E-10 80.8 36.4 433 36-525 842-1325(1666)
95 KOG0548 Molecular co-chaperone 98.9 5.4E-06 1.2E-10 81.6 28.1 167 385-560 304-473 (539)
96 KOG3617 WD40 and TPR repeat-co 98.8 7.1E-05 1.5E-09 77.3 35.7 471 42-577 810-1360(1416)
97 KOG1127 TPR repeat-containing 98.8 1.8E-05 4E-10 83.3 31.5 529 31-575 491-1103(1238)
98 PRK04841 transcriptional regul 98.8 5E-05 1.1E-09 87.3 39.1 263 311-576 462-760 (903)
99 KOG1127 TPR repeat-containing 98.7 8.9E-05 1.9E-09 78.4 34.1 505 38-570 465-1030(1238)
100 KOG1128 Uncharacterized conser 98.7 6.2E-07 1.4E-11 91.1 17.8 186 379-579 398-585 (777)
101 cd05804 StaR_like StaR_like; a 98.7 2.2E-05 4.8E-10 79.4 29.6 257 309-577 51-337 (355)
102 KOG4340 Uncharacterized conser 98.7 3.7E-06 8E-11 76.2 20.5 318 230-572 5-335 (459)
103 PF04733 Coatomer_E: Coatomer 98.7 3E-07 6.6E-12 87.9 14.2 149 418-576 110-265 (290)
104 PRK10370 formate-dependent nit 98.7 1.4E-06 3E-11 78.7 17.7 147 418-578 24-175 (198)
105 KOG1070 rRNA processing protei 98.7 6.6E-06 1.4E-10 89.5 24.1 198 379-580 1458-1667(1710)
106 TIGR03302 OM_YfiO outer membra 98.7 2.2E-06 4.7E-11 80.9 18.8 59 518-576 171-232 (235)
107 KOG0624 dsRNA-activated protei 98.7 0.00028 6.1E-09 65.7 30.7 312 171-577 40-395 (504)
108 PRK15359 type III secretion sy 98.6 7.9E-07 1.7E-11 75.9 13.7 122 431-558 14-137 (144)
109 cd05804 StaR_like StaR_like; a 98.6 8.5E-05 1.9E-09 75.1 31.0 189 344-542 122-336 (355)
110 PRK15359 type III secretion sy 98.6 9.4E-07 2E-11 75.4 13.0 107 466-577 14-122 (144)
111 PRK15363 pathogenicity island 98.6 4.3E-06 9.4E-11 69.9 15.5 118 481-621 35-154 (157)
112 PLN02789 farnesyltranstransfer 98.5 3.2E-05 6.8E-10 75.2 22.8 213 350-574 51-300 (320)
113 COG5010 TadD Flp pilus assembl 98.5 7.2E-06 1.6E-10 73.6 16.6 127 449-577 70-198 (257)
114 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 56.6 3.8 32 164-195 2-33 (34)
115 PRK10370 formate-dependent nit 98.5 1.6E-05 3.5E-10 71.8 18.3 156 384-550 21-181 (198)
116 KOG1128 Uncharacterized conser 98.5 8.7E-06 1.9E-10 83.1 17.4 218 333-576 395-616 (777)
117 PF12854 PPR_1: PPR repeat 98.5 2.7E-07 5.8E-12 55.8 4.0 33 265-297 2-34 (34)
118 PRK04841 transcriptional regul 98.5 0.00034 7.4E-09 80.5 32.8 261 211-473 463-759 (903)
119 COG5010 TadD Flp pilus assembl 98.4 2.2E-05 4.7E-10 70.6 17.6 160 409-572 66-227 (257)
120 PRK15179 Vi polysaccharide bio 98.4 3.2E-05 7E-10 83.0 21.7 131 409-543 85-218 (694)
121 COG4783 Putative Zn-dependent 98.4 0.00017 3.7E-09 70.8 23.0 176 393-573 251-434 (484)
122 TIGR03302 OM_YfiO outer membra 98.3 2.8E-05 6E-10 73.3 17.0 164 379-544 33-234 (235)
123 TIGR02552 LcrH_SycD type III s 98.3 6.3E-06 1.4E-10 70.0 11.4 96 481-576 17-114 (135)
124 COG4783 Putative Zn-dependent 98.3 0.00071 1.5E-08 66.5 26.1 180 376-577 271-455 (484)
125 KOG1125 TPR repeat-containing 98.3 3.3E-05 7.2E-10 76.9 17.3 240 312-566 296-561 (579)
126 PLN02789 farnesyltranstransfer 98.3 0.0001 2.2E-09 71.8 20.4 192 381-575 39-249 (320)
127 KOG0550 Molecular chaperone (D 98.3 6.7E-05 1.5E-09 71.6 17.2 205 411-648 169-395 (486)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.7E-05 3.8E-10 78.5 13.7 122 447-573 171-294 (395)
129 KOG1070 rRNA processing protei 98.2 0.00034 7.3E-09 76.8 23.6 203 334-542 1455-1663(1710)
130 PRK14720 transcript cleavage f 98.2 0.00022 4.7E-09 77.5 22.3 149 380-558 117-268 (906)
131 TIGR02552 LcrH_SycD type III s 98.2 3.8E-05 8.1E-10 65.2 13.3 113 432-548 5-120 (135)
132 KOG1914 mRNA cleavage and poly 98.2 0.0088 1.9E-07 59.7 38.6 161 410-573 366-536 (656)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.2E-05 2E-09 73.4 17.2 127 380-509 170-296 (395)
134 PRK15179 Vi polysaccharide bio 98.2 0.0004 8.6E-09 74.8 23.2 138 379-520 86-229 (694)
135 KOG3081 Vesicle coat complex C 98.2 0.0014 3.1E-08 59.2 22.4 156 384-546 113-275 (299)
136 TIGR00756 PPR pentatricopeptid 98.1 5.9E-06 1.3E-10 50.8 4.3 35 100-134 1-35 (35)
137 KOG2053 Mitochondrial inherita 98.1 0.024 5.1E-07 60.3 41.8 510 43-574 20-606 (932)
138 PF09976 TPR_21: Tetratricopep 98.0 0.00015 3.1E-09 62.3 13.7 114 458-572 24-143 (145)
139 TIGR00756 PPR pentatricopeptid 98.0 8.1E-06 1.8E-10 50.2 4.4 34 411-444 1-34 (35)
140 PRK14720 transcript cleavage f 98.0 0.0026 5.6E-08 69.4 25.8 30 199-228 30-59 (906)
141 KOG3060 Uncharacterized conser 98.0 0.00049 1.1E-08 61.6 16.7 164 379-545 52-223 (289)
142 KOG3060 Uncharacterized conser 98.0 0.0013 2.9E-08 58.9 19.1 163 412-578 54-222 (289)
143 PF13812 PPR_3: Pentatricopept 98.0 8.6E-06 1.9E-10 49.7 4.0 33 100-132 2-34 (34)
144 KOG0553 TPR repeat-containing 98.0 3.5E-05 7.5E-10 70.8 9.4 92 454-547 90-183 (304)
145 PF13414 TPR_11: TPR repeat; P 98.0 2.2E-05 4.7E-10 57.4 6.5 64 512-575 2-66 (69)
146 cd00189 TPR Tetratricopeptide 98.0 5.8E-05 1.2E-09 59.2 9.7 94 483-576 2-97 (100)
147 PLN03088 SGT1, suppressor of 98.0 0.00011 2.3E-09 73.4 13.4 85 491-575 12-98 (356)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00045 9.8E-09 59.2 15.5 125 412-540 14-145 (145)
149 KOG3081 Vesicle coat complex C 98.0 0.002 4.3E-08 58.3 19.4 168 324-508 96-269 (299)
150 KOG1914 mRNA cleavage and poly 98.0 0.028 6E-07 56.3 37.0 143 352-507 347-498 (656)
151 PF13812 PPR_3: Pentatricopept 97.9 1.9E-05 4.1E-10 48.2 4.3 33 411-443 2-34 (34)
152 PF12895 Apc3: Anaphase-promot 97.9 1E-05 2.2E-10 61.8 3.6 78 494-572 2-83 (84)
153 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00015 3.2E-09 59.9 10.9 94 483-576 4-105 (119)
154 PF13432 TPR_16: Tetratricopep 97.9 4.1E-05 8.9E-10 55.1 6.2 58 519-576 3-60 (65)
155 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00031 6.6E-09 57.9 11.2 104 447-550 4-113 (119)
156 KOG0553 TPR repeat-containing 97.8 0.00019 4.2E-09 66.0 9.9 100 417-520 88-189 (304)
157 PLN03088 SGT1, suppressor of 97.8 0.00039 8.4E-09 69.4 13.0 105 453-559 10-116 (356)
158 KOG2053 Mitochondrial inherita 97.7 0.1 2.3E-06 55.7 40.5 123 80-206 22-151 (932)
159 PF14559 TPR_19: Tetratricopep 97.7 0.00013 2.8E-09 53.0 6.3 53 524-576 2-54 (68)
160 COG4235 Cytochrome c biogenesi 97.7 0.0011 2.5E-08 61.5 13.4 104 476-579 151-259 (287)
161 cd00189 TPR Tetratricopeptide 97.7 0.00051 1.1E-08 53.6 10.0 91 452-544 7-99 (100)
162 PRK02603 photosystem I assembl 97.7 0.0012 2.6E-08 58.5 13.3 131 409-562 34-166 (172)
163 PF01535 PPR: PPR repeat; Int 97.7 6.5E-05 1.4E-09 44.5 3.6 31 100-130 1-31 (31)
164 PF13432 TPR_16: Tetratricopep 97.6 0.00011 2.4E-09 52.8 5.4 61 487-547 3-65 (65)
165 PRK02603 photosystem I assembl 97.6 0.0006 1.3E-08 60.5 11.2 81 482-562 36-121 (172)
166 PF01535 PPR: PPR repeat; Int 97.6 8E-05 1.7E-09 44.1 3.5 31 411-441 1-31 (31)
167 PRK10153 DNA-binding transcrip 97.6 0.0029 6.3E-08 66.1 17.0 139 407-547 334-487 (517)
168 PF04840 Vps16_C: Vps16, C-ter 97.6 0.086 1.9E-06 51.4 28.9 108 382-506 180-287 (319)
169 CHL00033 ycf3 photosystem I as 97.6 0.00064 1.4E-08 60.0 10.5 94 480-573 34-139 (168)
170 PF04840 Vps16_C: Vps16, C-ter 97.6 0.079 1.7E-06 51.6 25.5 111 446-573 178-288 (319)
171 PF13371 TPR_9: Tetratricopept 97.6 0.00027 5.8E-09 52.2 6.5 59 520-578 2-60 (73)
172 PRK15331 chaperone protein Sic 97.6 0.0017 3.6E-08 54.9 11.7 89 487-575 43-133 (165)
173 CHL00033 ycf3 photosystem I as 97.5 0.0054 1.2E-07 54.1 15.8 81 410-492 35-117 (168)
174 PF05843 Suf: Suppressor of fo 97.5 0.0032 7E-08 60.6 14.6 133 411-546 2-140 (280)
175 PF08579 RPM2: Mitochondrial r 97.5 0.001 2.2E-08 51.7 8.5 79 103-181 29-116 (120)
176 KOG1538 Uncharacterized conser 97.5 0.045 9.7E-07 55.9 22.2 125 385-541 709-845 (1081)
177 PF10037 MRP-S27: Mitochondria 97.4 0.0015 3.3E-08 65.2 11.6 121 62-182 61-186 (429)
178 PF12895 Apc3: Anaphase-promot 97.4 0.00062 1.3E-08 51.9 6.9 47 424-470 3-50 (84)
179 COG3898 Uncharacterized membra 97.4 0.15 3.2E-06 49.2 27.5 245 312-577 131-393 (531)
180 PF13414 TPR_11: TPR repeat; P 97.4 0.00037 7.9E-09 50.8 5.2 65 480-544 2-69 (69)
181 PF13431 TPR_17: Tetratricopep 97.4 0.00013 2.8E-09 44.0 2.2 33 536-568 2-34 (34)
182 PRK10153 DNA-binding transcrip 97.4 0.0072 1.6E-07 63.2 16.5 135 440-578 332-484 (517)
183 PF14559 TPR_19: Tetratricopep 97.4 0.0002 4.3E-09 52.1 3.6 58 493-550 3-62 (68)
184 PF07079 DUF1347: Protein of u 97.3 0.19 4E-06 49.6 33.3 59 514-573 461-521 (549)
185 COG4700 Uncharacterized protei 97.3 0.039 8.5E-07 47.3 16.7 133 441-575 85-221 (251)
186 PF10037 MRP-S27: Mitochondria 97.3 0.0028 6.1E-08 63.4 11.5 117 167-283 64-186 (429)
187 PF07079 DUF1347: Protein of u 97.3 0.23 5E-06 49.0 35.5 446 43-518 17-530 (549)
188 PRK15363 pathogenicity island 97.2 0.024 5.3E-07 47.8 15.0 93 383-476 39-134 (157)
189 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0014 3E-08 64.8 8.8 63 513-575 75-140 (453)
190 PF08579 RPM2: Mitochondrial r 97.2 0.0032 6.9E-08 49.1 8.8 79 204-282 29-116 (120)
191 PF13428 TPR_14: Tetratricopep 97.2 0.00062 1.4E-08 44.1 4.2 42 514-555 2-43 (44)
192 PF14938 SNAP: Soluble NSF att 97.2 0.039 8.5E-07 53.3 18.5 24 450-473 160-183 (282)
193 PF12688 TPR_5: Tetratrico pep 97.2 0.0037 8E-08 50.7 9.2 87 487-573 7-101 (120)
194 PRK10866 outer membrane biogen 97.2 0.12 2.6E-06 48.5 20.5 174 384-574 37-239 (243)
195 PF13371 TPR_9: Tetratricopept 97.1 0.0013 2.9E-08 48.4 6.0 64 488-551 2-67 (73)
196 PF05843 Suf: Suppressor of fo 97.1 0.0049 1.1E-07 59.3 11.4 129 446-576 2-136 (280)
197 PRK10803 tol-pal system protei 97.1 0.0036 7.9E-08 59.0 10.2 92 484-575 146-245 (263)
198 PF12688 TPR_5: Tetratrico pep 97.1 0.017 3.7E-07 46.9 12.5 93 415-507 6-101 (120)
199 KOG1538 Uncharacterized conser 97.1 0.18 4E-06 51.7 21.6 35 157-194 623-657 (1081)
200 KOG2280 Vacuolar assembly/sort 97.0 0.54 1.2E-05 49.5 25.1 111 269-402 683-793 (829)
201 KOG1130 Predicted G-alpha GTPa 97.0 0.0038 8.3E-08 59.9 9.2 129 446-574 196-342 (639)
202 KOG0543 FKBP-type peptidyl-pro 97.0 0.0061 1.3E-07 59.0 10.5 64 513-576 257-320 (397)
203 COG4700 Uncharacterized protei 97.0 0.021 4.6E-07 48.8 12.3 108 469-576 77-189 (251)
204 PF06239 ECSIT: Evolutionarily 97.0 0.0088 1.9E-07 52.9 10.3 97 399-496 34-153 (228)
205 PF14938 SNAP: Soluble NSF att 97.0 0.4 8.6E-06 46.4 24.0 105 303-411 157-269 (282)
206 PF13281 DUF4071: Domain of un 97.0 0.3 6.6E-06 48.1 21.7 165 379-546 141-338 (374)
207 KOG2796 Uncharacterized conser 96.9 0.12 2.7E-06 46.9 16.7 140 202-343 179-326 (366)
208 PF13424 TPR_12: Tetratricopep 96.8 0.0021 4.7E-08 48.1 5.0 62 514-575 6-74 (78)
209 PRK10866 outer membrane biogen 96.8 0.47 1E-05 44.5 22.4 67 301-369 32-102 (243)
210 KOG2796 Uncharacterized conser 96.8 0.26 5.6E-06 44.9 17.7 136 412-547 179-320 (366)
211 PF13525 YfiO: Outer membrane 96.8 0.089 1.9E-06 47.9 15.7 168 381-567 7-198 (203)
212 PF06239 ECSIT: Evolutionarily 96.7 0.0068 1.5E-07 53.6 7.7 36 149-184 118-153 (228)
213 PRK10803 tol-pal system protei 96.7 0.028 6.1E-07 53.1 12.5 100 448-547 146-251 (263)
214 COG3898 Uncharacterized membra 96.7 0.65 1.4E-05 45.0 27.1 245 248-509 133-391 (531)
215 KOG2041 WD40 repeat protein [G 96.7 1.1 2.3E-05 46.9 28.8 151 148-326 748-903 (1189)
216 PF14432 DYW_deaminase: DYW fa 96.6 0.0025 5.3E-08 51.5 3.9 60 583-654 2-69 (116)
217 KOG0550 Molecular chaperone (D 96.6 0.87 1.9E-05 44.6 21.1 86 419-507 258-347 (486)
218 PF03704 BTAD: Bacterial trans 96.5 0.0081 1.8E-07 51.5 7.1 69 514-582 63-136 (146)
219 KOG0543 FKBP-type peptidyl-pro 96.5 0.036 7.9E-07 53.8 11.6 137 417-575 215-354 (397)
220 PF09205 DUF1955: Domain of un 96.5 0.19 4.1E-06 40.5 13.3 140 421-579 13-152 (161)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.1 2.4E-05 44.3 30.7 134 410-546 397-535 (660)
222 KOG2041 WD40 repeat protein [G 96.4 1.5 3.3E-05 45.8 26.5 19 420-438 933-951 (1189)
223 COG4235 Cytochrome c biogenesi 96.4 0.2 4.2E-06 47.0 15.4 104 442-547 153-261 (287)
224 PF13512 TPR_18: Tetratricopep 96.4 0.07 1.5E-06 44.3 11.1 88 489-576 18-128 (142)
225 KOG2280 Vacuolar assembly/sort 96.4 1.8 3.8E-05 45.9 33.8 326 205-572 442-795 (829)
226 COG3118 Thioredoxin domain-con 96.3 0.23 5E-06 46.4 15.3 121 453-576 142-265 (304)
227 KOG4555 TPR repeat-containing 96.3 0.032 6.9E-07 44.7 8.3 89 490-578 52-146 (175)
228 KOG1130 Predicted G-alpha GTPa 96.2 0.022 4.7E-07 54.9 8.3 133 338-473 197-343 (639)
229 PF12921 ATP13: Mitochondrial 96.2 0.073 1.6E-06 43.7 10.3 97 379-491 2-98 (126)
230 PF13424 TPR_12: Tetratricopep 96.0 0.0099 2.1E-07 44.4 4.1 61 482-542 6-75 (78)
231 PRK11906 transcriptional regul 96.0 0.12 2.5E-06 51.8 12.2 65 511-575 336-400 (458)
232 PF13525 YfiO: Outer membrane 95.8 1.4 3.1E-05 40.1 19.7 58 308-365 12-71 (203)
233 COG0457 NrfG FOG: TPR repeat [ 95.7 1.7 3.7E-05 40.2 27.1 196 379-576 59-265 (291)
234 KOG2114 Vacuolar assembly/sort 95.7 3.9 8.5E-05 44.0 30.0 158 30-196 281-458 (933)
235 PF10300 DUF3808: Protein of u 95.5 0.83 1.8E-05 47.6 17.3 116 458-575 246-375 (468)
236 PF03704 BTAD: Bacterial trans 95.5 0.18 3.8E-06 43.2 10.4 71 412-483 64-138 (146)
237 KOG1258 mRNA processing protei 95.5 3.8 8.2E-05 42.5 33.1 419 98-561 44-489 (577)
238 PF00515 TPR_1: Tetratricopept 95.5 0.031 6.8E-07 33.6 4.1 33 514-546 2-34 (34)
239 PF07719 TPR_2: Tetratricopept 95.4 0.042 9.2E-07 32.9 4.7 33 514-546 2-34 (34)
240 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.093 2E-06 52.3 9.1 63 480-542 74-141 (453)
241 PRK11906 transcriptional regul 95.3 0.91 2E-05 45.7 15.7 144 426-572 274-432 (458)
242 KOG1585 Protein required for f 95.3 2.2 4.9E-05 38.7 16.7 201 338-571 33-251 (308)
243 COG3118 Thioredoxin domain-con 95.3 1.8 3.9E-05 40.7 16.4 148 417-566 141-291 (304)
244 KOG1920 IkappaB kinase complex 95.2 7.1 0.00015 44.0 23.8 27 271-297 791-819 (1265)
245 COG1729 Uncharacterized protei 95.1 0.23 5.1E-06 45.9 10.3 57 519-575 184-243 (262)
246 PRK15331 chaperone protein Sic 95.1 0.54 1.2E-05 40.1 11.6 87 420-509 47-133 (165)
247 KOG1920 IkappaB kinase complex 95.0 6.5 0.00014 44.3 22.0 92 278-406 960-1053(1265)
248 KOG3941 Intermediate in Toll s 94.9 0.28 6.1E-06 45.2 9.9 110 398-508 53-186 (406)
249 PF04053 Coatomer_WDAD: Coatom 94.6 0.63 1.4E-05 47.8 13.0 134 418-577 269-403 (443)
250 KOG2066 Vacuolar assembly/sort 94.6 7.8 0.00017 41.6 23.4 102 141-247 363-467 (846)
251 COG1729 Uncharacterized protei 94.6 0.3 6.5E-06 45.2 9.5 89 458-548 154-250 (262)
252 KOG1941 Acetylcholine receptor 94.5 0.46 1E-05 45.5 10.7 194 379-573 43-272 (518)
253 PF12921 ATP13: Mitochondrial 94.5 0.34 7.5E-06 39.8 8.8 93 335-453 1-96 (126)
254 smart00299 CLH Clathrin heavy 94.4 2.7 5.8E-05 35.5 15.1 123 415-557 12-135 (140)
255 PF04053 Coatomer_WDAD: Coatom 94.3 1.1 2.4E-05 46.0 14.0 157 107-295 269-427 (443)
256 KOG2610 Uncharacterized conser 94.3 0.5 1.1E-05 44.7 10.2 159 422-583 115-283 (491)
257 COG4785 NlpI Lipoprotein NlpI, 94.3 3.8 8.3E-05 36.6 16.9 163 410-578 99-268 (297)
258 KOG1941 Acetylcholine receptor 94.2 4.1 8.9E-05 39.4 16.1 126 381-506 124-271 (518)
259 PF13281 DUF4071: Domain of un 94.2 2.5 5.5E-05 41.8 15.5 33 233-265 303-335 (374)
260 KOG4234 TPR repeat-containing 94.2 0.31 6.6E-06 42.5 8.0 87 491-577 105-198 (271)
261 PF04184 ST7: ST7 protein; In 94.1 2.2 4.8E-05 43.2 14.9 193 422-629 180-382 (539)
262 KOG3941 Intermediate in Toll s 94.0 0.27 5.9E-06 45.2 7.8 89 96-184 64-173 (406)
263 COG4105 ComL DNA uptake lipopr 93.9 5.4 0.00012 36.9 18.3 170 386-575 41-232 (254)
264 PF04184 ST7: ST7 protein; In 93.8 8.8 0.00019 39.1 20.4 16 560-575 415-430 (539)
265 COG0457 NrfG FOG: TPR repeat [ 93.7 5.6 0.00012 36.5 25.7 197 337-545 60-268 (291)
266 KOG1585 Protein required for f 93.7 5.5 0.00012 36.4 16.1 145 379-536 91-250 (308)
267 PF07035 Mic1: Colon cancer-as 93.6 3.8 8.2E-05 35.4 13.7 138 220-369 14-153 (167)
268 smart00299 CLH Clathrin heavy 93.4 4.2 9.2E-05 34.2 15.3 86 102-195 10-95 (140)
269 PF13181 TPR_8: Tetratricopept 93.3 0.16 3.4E-06 30.4 3.7 31 515-545 3-33 (34)
270 PF02259 FAT: FAT domain; Int 93.3 9.7 0.00021 38.1 20.8 148 409-559 145-304 (352)
271 KOG4555 TPR repeat-containing 93.0 0.33 7.1E-06 39.1 5.9 56 521-576 51-106 (175)
272 KOG1258 mRNA processing protei 93.0 13 0.00028 38.7 26.4 121 445-567 297-420 (577)
273 KOG2610 Uncharacterized conser 92.9 2.9 6.3E-05 39.8 12.7 154 391-547 115-283 (491)
274 PF13176 TPR_7: Tetratricopept 92.8 0.21 4.5E-06 30.5 3.7 26 516-541 2-27 (36)
275 KOG4648 Uncharacterized conser 92.6 0.25 5.4E-06 46.8 5.5 111 452-569 104-217 (536)
276 COG5107 RNA14 Pre-mRNA 3'-end 92.4 13 0.00028 37.3 31.0 86 26-112 36-122 (660)
277 PF13176 TPR_7: Tetratricopept 92.1 0.31 6.6E-06 29.7 3.9 26 549-574 1-26 (36)
278 PF10300 DUF3808: Protein of u 92.1 17 0.00037 38.0 23.0 161 203-366 191-377 (468)
279 PRK11619 lytic murein transgly 92.1 21 0.00046 38.9 29.0 113 424-539 255-372 (644)
280 PF13512 TPR_18: Tetratricopep 91.8 4.4 9.5E-05 33.9 11.3 114 418-547 18-133 (142)
281 PF13428 TPR_14: Tetratricopep 91.8 0.33 7.2E-06 31.2 3.9 37 483-519 3-41 (44)
282 PF08631 SPO22: Meiosis protei 91.4 14 0.0003 35.6 25.7 19 522-540 255-273 (278)
283 TIGR02561 HrpB1_HrpK type III 91.1 1.5 3.2E-05 36.6 7.8 55 524-578 21-75 (153)
284 PRK09687 putative lyase; Provi 91.0 15 0.00033 35.3 26.8 119 414-544 146-265 (280)
285 COG3629 DnrI DNA-binding trans 90.9 1.1 2.5E-05 42.2 7.9 59 515-573 155-213 (280)
286 PF09613 HrpB1_HrpK: Bacterial 90.8 1.6 3.5E-05 37.1 8.0 53 524-576 21-73 (160)
287 PF13170 DUF4003: Protein of u 90.3 13 0.00028 36.0 14.8 63 116-178 79-150 (297)
288 PF09205 DUF1955: Domain of un 90.0 9.4 0.0002 31.2 14.3 62 414-477 90-151 (161)
289 PRK09687 putative lyase; Provi 89.9 19 0.00041 34.6 24.4 75 267-346 203-277 (280)
290 PRK12798 chemotaxis protein; R 89.9 23 0.0005 35.5 19.5 180 392-574 125-322 (421)
291 PRK10941 hypothetical protein; 89.8 2.5 5.4E-05 40.1 9.3 63 515-577 183-245 (269)
292 PF14853 Fis1_TPR_C: Fis1 C-te 89.5 2.5 5.3E-05 28.4 6.5 51 549-625 3-53 (53)
293 COG4105 ComL DNA uptake lipopr 89.4 18 0.00039 33.6 20.9 137 416-576 40-196 (254)
294 PF02259 FAT: FAT domain; Int 89.4 20 0.00044 35.8 16.5 65 511-575 144-212 (352)
295 KOG4648 Uncharacterized conser 89.2 1.2 2.5E-05 42.5 6.5 87 417-507 104-191 (536)
296 KOG2114 Vacuolar assembly/sort 89.0 39 0.00085 36.9 26.7 46 519-567 711-756 (933)
297 PF07719 TPR_2: Tetratricopept 88.6 0.76 1.6E-05 27.2 3.5 29 548-576 2-30 (34)
298 PF13174 TPR_6: Tetratricopept 88.6 0.87 1.9E-05 26.7 3.7 28 518-545 5-32 (33)
299 PF10345 Cohesin_load: Cohesin 88.6 41 0.0009 36.7 33.8 56 519-574 540-604 (608)
300 KOG2066 Vacuolar assembly/sort 88.5 41 0.00088 36.5 22.5 55 73-127 362-420 (846)
301 PF13374 TPR_10: Tetratricopep 88.5 1 2.2E-05 28.2 4.2 27 515-541 4-30 (42)
302 KOG4234 TPR repeat-containing 88.5 7.3 0.00016 34.4 10.2 98 455-554 105-209 (271)
303 COG2976 Uncharacterized protei 88.5 17 0.00037 32.1 13.9 114 428-545 70-191 (207)
304 PF10602 RPN7: 26S proteasome 88.4 4.8 0.0001 35.6 9.7 92 482-573 37-139 (177)
305 KOG4570 Uncharacterized conser 88.1 2.2 4.9E-05 40.2 7.4 105 59-164 56-165 (418)
306 COG3629 DnrI DNA-binding trans 87.5 6.8 0.00015 37.1 10.4 60 379-438 153-215 (280)
307 PHA02875 ankyrin repeat protei 87.4 38 0.00081 34.9 18.0 209 40-270 7-230 (413)
308 COG4649 Uncharacterized protei 87.4 7.7 0.00017 33.4 9.5 117 282-406 70-194 (221)
309 KOG4570 Uncharacterized conser 87.4 5.3 0.00011 37.8 9.4 92 379-474 64-164 (418)
310 PF07035 Mic1: Colon cancer-as 87.2 19 0.00041 31.2 15.6 134 155-329 15-148 (167)
311 PF09613 HrpB1_HrpK: Bacterial 86.8 19 0.00041 30.8 12.2 87 455-544 20-108 (160)
312 PF11207 DUF2989: Protein of u 86.7 4 8.7E-05 36.3 7.9 75 492-567 118-198 (203)
313 PF00515 TPR_1: Tetratricopept 86.6 1.8 3.9E-05 25.6 4.3 28 411-438 2-29 (34)
314 PF13170 DUF4003: Protein of u 86.6 32 0.0007 33.3 15.1 134 318-490 79-226 (297)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 86.3 5.4 0.00012 30.5 7.2 63 425-489 22-84 (103)
316 PF02284 COX5A: Cytochrome c o 86.2 5.7 0.00012 30.7 7.4 61 427-489 27-87 (108)
317 PF00637 Clathrin: Region in C 85.9 0.93 2E-05 38.5 3.7 51 106-156 14-64 (143)
318 PRK15180 Vi polysaccharide bio 85.8 13 0.00029 37.4 11.6 84 492-575 334-419 (831)
319 COG2976 Uncharacterized protei 85.6 25 0.00055 31.1 12.2 90 487-577 95-189 (207)
320 smart00028 TPR Tetratricopepti 85.5 1.6 3.5E-05 24.7 3.8 30 515-544 3-32 (34)
321 KOG1308 Hsp70-interacting prot 85.5 0.53 1.1E-05 44.9 2.1 89 493-581 126-216 (377)
322 KOG3364 Membrane protein invol 85.3 10 0.00023 31.1 8.9 24 552-575 76-99 (149)
323 PF07721 TPR_4: Tetratricopept 85.1 1.3 2.8E-05 24.5 2.8 23 549-571 3-25 (26)
324 PF14853 Fis1_TPR_C: Fis1 C-te 85.1 2.2 4.8E-05 28.7 4.4 31 518-548 6-36 (53)
325 PF13374 TPR_10: Tetratricopep 85.1 1.7 3.8E-05 27.1 3.9 28 548-575 3-30 (42)
326 PF13181 TPR_8: Tetratricopept 84.9 2 4.3E-05 25.4 3.8 28 548-575 2-29 (34)
327 PF04097 Nic96: Nup93/Nic96; 84.4 68 0.0015 35.0 21.4 43 104-147 116-158 (613)
328 PF10602 RPN7: 26S proteasome 84.1 9.9 0.00021 33.6 9.4 25 172-196 39-63 (177)
329 PF00637 Clathrin: Region in C 83.7 1.2 2.7E-05 37.7 3.5 86 37-126 12-97 (143)
330 KOG0545 Aryl-hydrocarbon recep 83.4 19 0.0004 33.1 10.5 61 516-576 233-293 (329)
331 KOG1464 COP9 signalosome, subu 82.7 41 0.0009 31.3 18.3 240 284-537 41-327 (440)
332 KOG0890 Protein kinase of the 82.7 1.4E+02 0.003 37.4 28.8 65 512-578 1669-1733(2382)
333 PF13174 TPR_6: Tetratricopept 82.5 1.6 3.5E-05 25.5 2.7 28 549-576 2-29 (33)
334 COG1747 Uncharacterized N-term 82.3 64 0.0014 33.2 22.5 163 379-548 66-240 (711)
335 KOG1550 Extracellular protein 82.2 77 0.0017 34.1 16.9 179 395-580 228-430 (552)
336 PF13431 TPR_17: Tetratricopep 82.1 1.7 3.6E-05 26.0 2.6 20 513-532 13-32 (34)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 81.2 11 0.00025 28.8 7.1 48 115-162 23-70 (103)
338 PF06552 TOM20_plant: Plant sp 80.2 3.5 7.7E-05 35.8 4.8 45 529-573 51-99 (186)
339 KOG0890 Protein kinase of the 79.1 1.8E+02 0.0039 36.4 28.5 160 139-307 1388-1552(2382)
340 PF02284 COX5A: Cytochrome c o 79.0 12 0.00026 29.0 6.7 47 117-163 28-74 (108)
341 PRK13800 putative oxidoreducta 78.6 1.3E+02 0.0029 34.7 24.8 256 290-575 624-880 (897)
342 PF08631 SPO22: Meiosis protei 78.5 65 0.0014 31.0 24.2 65 272-336 123-192 (278)
343 PF11207 DUF2989: Protein of u 78.1 21 0.00045 31.9 9.0 79 421-501 118-198 (203)
344 KOG0376 Serine-threonine phosp 77.5 5 0.00011 40.5 5.7 87 489-575 12-100 (476)
345 PF07721 TPR_4: Tetratricopept 77.5 4.6 0.0001 22.2 3.3 21 485-505 5-25 (26)
346 PF13762 MNE1: Mitochondrial s 76.4 42 0.00091 28.3 9.9 89 58-147 28-128 (145)
347 PF14561 TPR_20: Tetratricopep 76.3 8.7 0.00019 29.4 5.6 43 534-576 9-51 (90)
348 PF04910 Tcf25: Transcriptiona 75.8 89 0.0019 31.4 14.0 64 512-575 99-167 (360)
349 KOG4279 Serine/threonine prote 75.5 73 0.0016 34.5 13.3 184 303-546 203-399 (1226)
350 COG4455 ImpE Protein of avirul 75.0 15 0.00032 33.1 7.2 63 484-546 4-68 (273)
351 TIGR03504 FimV_Cterm FimV C-te 75.0 6.2 0.00014 25.3 3.7 27 551-577 3-29 (44)
352 KOG4507 Uncharacterized conser 74.9 7.9 0.00017 40.0 6.3 101 455-558 617-721 (886)
353 KOG4642 Chaperone-dependent E3 74.9 8.6 0.00019 35.0 5.8 84 455-541 20-106 (284)
354 PRK15180 Vi polysaccharide bio 74.8 23 0.00049 35.9 9.1 87 456-544 334-422 (831)
355 COG3947 Response regulator con 74.8 11 0.00025 35.4 6.7 60 515-574 281-340 (361)
356 KOG2063 Vacuolar assembly/sort 74.6 69 0.0015 36.0 13.7 27 303-329 506-532 (877)
357 TIGR02561 HrpB1_HrpK type III 74.6 52 0.0011 27.8 10.4 50 457-511 22-74 (153)
358 COG4785 NlpI Lipoprotein NlpI, 74.3 68 0.0015 29.1 16.9 157 379-543 99-267 (297)
359 TIGR02508 type_III_yscG type I 74.3 39 0.00083 26.2 8.7 61 277-340 46-106 (115)
360 PHA02875 ankyrin repeat protei 73.8 1.1E+02 0.0024 31.4 18.5 54 279-336 174-230 (413)
361 PF06552 TOM20_plant: Plant sp 73.7 43 0.00093 29.3 9.5 45 529-580 96-140 (186)
362 KOG1550 Extracellular protein 73.6 1.4E+02 0.003 32.2 22.7 177 394-576 343-538 (552)
363 PRK10941 hypothetical protein; 72.3 27 0.00059 33.2 9.0 66 484-549 184-251 (269)
364 PF04097 Nic96: Nup93/Nic96; 72.1 1.6E+02 0.0034 32.3 17.0 62 275-336 116-187 (613)
365 KOG0551 Hsp90 co-chaperone CNS 71.2 16 0.00034 35.2 6.9 90 484-573 84-179 (390)
366 PF04190 DUF410: Protein of un 71.2 96 0.0021 29.5 18.8 163 282-473 2-169 (260)
367 PF13762 MNE1: Mitochondrial s 69.9 59 0.0013 27.4 9.3 50 199-248 78-128 (145)
368 COG2909 MalT ATP-dependent tra 68.8 2E+02 0.0043 32.2 27.9 222 348-573 427-685 (894)
369 PF09670 Cas_Cas02710: CRISPR- 68.8 94 0.002 31.5 12.5 120 420-541 141-269 (379)
370 PRK11619 lytic murein transgly 68.4 1.9E+02 0.0041 31.8 38.4 191 380-581 313-510 (644)
371 KOG1586 Protein required for f 68.4 99 0.0021 28.5 14.5 89 459-547 128-229 (288)
372 cd00280 TRFH Telomeric Repeat 68.3 84 0.0018 27.6 11.0 64 497-561 85-158 (200)
373 PRK13342 recombination factor 68.3 1.5E+02 0.0033 30.5 14.4 116 116-249 154-279 (413)
374 TIGR02508 type_III_yscG type I 67.8 56 0.0012 25.4 9.6 62 386-450 46-107 (115)
375 smart00028 TPR Tetratricopepti 67.6 9.6 0.00021 21.2 3.4 29 548-576 2-30 (34)
376 PF10579 Rapsyn_N: Rapsyn N-te 67.2 14 0.0003 27.2 4.4 47 457-503 18-65 (80)
377 PF10579 Rapsyn_N: Rapsyn N-te 67.1 12 0.00025 27.5 4.0 45 525-569 18-65 (80)
378 KOG3364 Membrane protein invol 66.7 55 0.0012 27.1 8.1 71 478-548 29-106 (149)
379 COG1747 Uncharacterized N-term 65.5 1.8E+02 0.0038 30.3 22.4 50 460-509 184-233 (711)
380 smart00386 HAT HAT (Half-A-TPR 64.8 13 0.00029 21.2 3.6 29 527-555 1-29 (33)
381 KOG0276 Vesicle coat complex C 64.8 59 0.0013 34.2 9.9 129 138-295 618-746 (794)
382 COG4649 Uncharacterized protei 64.6 97 0.0021 27.0 16.2 121 420-541 68-195 (221)
383 KOG1464 COP9 signalosome, subu 64.4 1.3E+02 0.0027 28.3 15.0 152 205-357 70-252 (440)
384 KOG1586 Protein required for f 62.3 1.3E+02 0.0028 27.7 15.5 87 383-481 97-189 (288)
385 PF07720 TPR_3: Tetratricopept 62.2 28 0.00061 21.1 4.5 29 516-544 4-34 (36)
386 PF12862 Apc5: Anaphase-promot 61.6 28 0.00061 26.8 5.8 53 523-575 8-69 (94)
387 KOG0403 Neoplastic transformat 61.5 1.9E+02 0.0042 29.4 15.5 323 103-460 218-589 (645)
388 KOG4077 Cytochrome c oxidase, 61.2 56 0.0012 26.6 7.1 60 428-489 67-126 (149)
389 TIGR03504 FimV_Cterm FimV C-te 60.6 22 0.00047 22.8 4.0 24 307-330 5-28 (44)
390 KOG2471 TPR repeat-containing 60.5 2.1E+02 0.0046 29.6 13.4 312 147-492 30-380 (696)
391 PF11846 DUF3366: Domain of un 59.2 36 0.00079 30.5 7.0 34 511-544 142-175 (193)
392 PF07163 Pex26: Pex26 protein; 59.1 1.2E+02 0.0025 28.8 9.9 87 417-506 90-183 (309)
393 COG0790 FOG: TPR repeat, SEL1 59.1 1.7E+02 0.0038 28.1 17.5 180 392-578 54-268 (292)
394 KOG0276 Vesicle coat complex C 58.7 80 0.0017 33.3 9.6 78 68-160 615-692 (794)
395 PF10366 Vps39_1: Vacuolar sor 58.5 66 0.0014 25.6 7.4 28 302-329 40-67 (108)
396 COG4976 Predicted methyltransf 56.1 16 0.00035 33.1 3.9 57 490-546 4-62 (287)
397 PF07163 Pex26: Pex26 protein; 56.0 89 0.0019 29.6 8.6 86 105-192 89-181 (309)
398 KOG0991 Replication factor C, 55.7 1.7E+02 0.0037 27.0 15.4 138 381-544 132-269 (333)
399 COG5159 RPN6 26S proteasome re 55.0 1.9E+02 0.0042 27.4 17.6 33 206-238 9-41 (421)
400 COG3947 Response regulator con 54.9 2E+02 0.0043 27.5 13.9 99 441-541 223-341 (361)
401 PF09986 DUF2225: Uncharacteri 54.7 78 0.0017 29.0 8.3 63 515-577 120-195 (214)
402 PF12968 DUF3856: Domain of Un 54.6 1.1E+02 0.0025 24.7 8.0 62 512-573 54-126 (144)
403 PF10345 Cohesin_load: Cohesin 54.5 3.3E+02 0.0071 29.9 32.4 162 31-193 58-249 (608)
404 KOG0292 Vesicle coat complex C 53.7 20 0.00044 39.2 4.7 95 423-541 606-700 (1202)
405 PF10366 Vps39_1: Vacuolar sor 53.5 1E+02 0.0022 24.5 7.7 55 383-438 3-67 (108)
406 PF09477 Type_III_YscG: Bacter 53.5 1.1E+02 0.0024 24.2 9.0 86 351-448 21-106 (116)
407 PF12796 Ank_2: Ankyrin repeat 53.3 60 0.0013 24.3 6.4 16 76-91 32-47 (89)
408 KOG4077 Cytochrome c oxidase, 53.1 71 0.0015 26.0 6.5 47 117-163 67-113 (149)
409 PF09477 Type_III_YscG: Bacter 53.0 1.1E+02 0.0025 24.1 8.6 86 250-339 21-106 (116)
410 KOG3824 Huntingtin interacting 51.9 27 0.00058 33.2 4.7 61 492-552 127-189 (472)
411 cd08819 CARD_MDA5_2 Caspase ac 51.9 96 0.0021 23.4 6.7 65 153-219 21-85 (88)
412 KOG2422 Uncharacterized conser 51.6 2E+02 0.0044 30.3 11.1 50 421-471 249-310 (665)
413 PF04190 DUF410: Protein of un 51.5 2.2E+02 0.0048 27.0 17.4 141 210-365 20-170 (260)
414 COG2912 Uncharacterized conser 51.1 1.1E+02 0.0024 28.8 8.6 60 517-576 185-244 (269)
415 cd08819 CARD_MDA5_2 Caspase ac 50.8 84 0.0018 23.8 6.2 66 51-119 21-86 (88)
416 PF11846 DUF3366: Domain of un 50.4 53 0.0011 29.5 6.5 55 455-509 118-172 (193)
417 PF13934 ELYS: Nuclear pore co 50.1 1.8E+02 0.0039 26.9 10.0 107 412-527 78-186 (226)
418 PF12796 Ank_2: Ankyrin repeat 49.6 63 0.0014 24.2 6.0 80 77-168 4-86 (89)
419 COG5159 RPN6 26S proteasome re 49.3 2.4E+02 0.0052 26.9 15.0 32 308-339 10-41 (421)
420 COG4976 Predicted methyltransf 49.1 33 0.00071 31.3 4.6 56 523-578 5-60 (287)
421 PF14863 Alkyl_sulf_dimr: Alky 49.0 74 0.0016 26.8 6.5 63 497-562 57-119 (141)
422 PHA03100 ankyrin repeat protei 48.8 3.4E+02 0.0074 28.5 17.5 50 38-91 38-94 (480)
423 PF14561 TPR_20: Tetratricopep 48.0 1.2E+02 0.0027 23.1 7.9 53 511-563 20-74 (90)
424 PF11848 DUF3368: Domain of un 47.9 57 0.0012 21.4 4.6 34 144-177 12-45 (48)
425 PF11768 DUF3312: Protein of u 47.5 2.4E+02 0.0052 29.7 11.0 56 383-438 412-472 (545)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 47.2 1.3E+02 0.0028 24.8 7.7 42 531-572 81-124 (126)
427 KOG3636 Uncharacterized conser 47.0 2.7E+02 0.0059 28.2 10.8 82 129-211 178-271 (669)
428 PF11848 DUF3368: Domain of un 45.9 73 0.0016 20.8 4.9 34 210-243 12-45 (48)
429 PRK10564 maltose regulon perip 44.5 43 0.00093 32.1 4.9 41 303-343 259-299 (303)
430 KOG3824 Huntingtin interacting 43.3 32 0.00069 32.7 3.8 51 455-508 126-177 (472)
431 PF12862 Apc5: Anaphase-promot 43.1 88 0.0019 24.0 5.9 26 517-542 45-70 (94)
432 COG2909 MalT ATP-dependent tra 42.7 5.4E+02 0.012 29.0 25.6 223 180-406 426-686 (894)
433 smart00777 Mad3_BUB1_I Mad3/BU 42.2 1.9E+02 0.0042 23.7 7.8 40 532-571 82-123 (125)
434 COG4455 ImpE Protein of avirul 42.0 2.8E+02 0.006 25.4 11.5 126 413-546 4-138 (273)
435 PF11663 Toxin_YhaV: Toxin wit 41.5 38 0.00082 27.9 3.5 32 111-144 107-138 (140)
436 KOG1308 Hsp70-interacting prot 41.5 16 0.00034 35.4 1.6 118 524-657 125-247 (377)
437 PF14689 SPOB_a: Sensor_kinase 41.5 39 0.00084 23.6 3.2 23 415-437 28-50 (62)
438 cd00280 TRFH Telomeric Repeat 41.5 1.7E+02 0.0037 25.8 7.6 35 488-522 118-152 (200)
439 KOG2396 HAT (Half-A-TPR) repea 41.4 4.4E+02 0.0095 27.6 34.0 239 319-573 300-556 (568)
440 KOG4567 GTPase-activating prot 40.4 2.9E+02 0.0063 26.7 9.4 42 155-196 264-305 (370)
441 PF08424 NRDE-2: NRDE-2, neces 40.3 3.7E+02 0.0081 26.5 17.0 142 426-578 47-211 (321)
442 TIGR02710 CRISPR-associated pr 40.1 4.1E+02 0.0089 26.9 12.0 27 419-445 139-165 (380)
443 PHA03100 ankyrin repeat protei 40.1 4.6E+02 0.01 27.5 13.8 108 53-168 87-203 (480)
444 KOG4507 Uncharacterized conser 39.1 1.1E+02 0.0023 32.3 7.0 83 212-295 619-701 (886)
445 KOG4567 GTPase-activating prot 39.1 3.7E+02 0.008 26.1 10.2 73 430-508 263-345 (370)
446 PRK10564 maltose regulon perip 38.4 64 0.0014 30.9 5.1 41 411-451 258-298 (303)
447 KOG0545 Aryl-hydrocarbon recep 38.3 2.2E+02 0.0048 26.5 8.1 67 483-549 232-300 (329)
448 PF11663 Toxin_YhaV: Toxin wit 38.2 46 0.00099 27.5 3.5 31 212-244 107-137 (140)
449 PF12069 DUF3549: Protein of u 38.2 4.1E+02 0.0089 26.3 12.6 86 385-473 172-258 (340)
450 TIGR01503 MthylAspMut_E methyl 37.9 2.5E+02 0.0054 28.9 9.2 48 114-164 69-116 (480)
451 PRK14700 recombination factor 37.9 3.9E+02 0.0084 25.9 10.1 48 304-351 126-176 (300)
452 KOG2422 Uncharacterized conser 37.5 4.3E+02 0.0092 28.2 10.8 81 12-92 319-403 (665)
453 KOG1524 WD40 repeat-containing 37.4 1.7E+02 0.0037 30.4 8.0 89 480-571 572-668 (737)
454 KOG2062 26S proteasome regulat 37.3 6.1E+02 0.013 28.0 25.5 500 27-546 52-638 (929)
455 PF08424 NRDE-2: NRDE-2, neces 37.2 4.2E+02 0.0091 26.1 17.0 119 461-581 47-188 (321)
456 PF04090 RNA_pol_I_TF: RNA pol 35.5 3.3E+02 0.0073 24.5 10.8 28 35-62 44-71 (199)
457 COG5191 Uncharacterized conser 35.2 68 0.0015 30.7 4.6 76 478-553 104-182 (435)
458 KOG0686 COP9 signalosome, subu 34.6 5.1E+02 0.011 26.3 14.1 92 379-472 150-256 (466)
459 PRK13342 recombination factor 34.6 5.3E+02 0.011 26.5 17.1 45 413-457 230-277 (413)
460 KOG3807 Predicted membrane pro 34.5 4.5E+02 0.0097 25.7 14.0 18 531-548 380-397 (556)
461 PF13934 ELYS: Nuclear pore co 34.0 3.9E+02 0.0084 24.8 17.6 51 487-538 114-165 (226)
462 PF11838 ERAP1_C: ERAP1-like C 33.7 4.6E+02 0.01 25.6 21.2 111 460-571 145-261 (324)
463 PF04910 Tcf25: Transcriptiona 33.7 5.1E+02 0.011 26.1 18.8 55 417-471 110-165 (360)
464 KOG0508 Ankyrin repeat protein 33.6 3.8E+02 0.0082 27.6 9.6 96 53-154 98-200 (615)
465 KOG4814 Uncharacterized conser 33.4 3.9E+02 0.0085 28.8 10.0 83 493-575 366-456 (872)
466 PHA02537 M terminase endonucle 32.8 3.9E+02 0.0085 24.8 9.1 23 420-442 93-115 (230)
467 PF14689 SPOB_a: Sensor_kinase 32.8 1.2E+02 0.0026 21.2 4.6 27 447-473 25-51 (62)
468 PF10516 SHNi-TPR: SHNi-TPR; 32.5 1.1E+02 0.0023 19.0 3.7 28 548-575 2-29 (38)
469 PF12069 DUF3549: Protein of u 31.8 5.2E+02 0.011 25.6 11.6 88 175-265 172-260 (340)
470 PF13929 mRNA_stabil: mRNA sta 31.6 4.8E+02 0.01 25.1 19.7 61 265-325 197-262 (292)
471 COG0735 Fur Fe2+/Zn2+ uptake r 31.5 2.6E+02 0.0057 23.6 7.4 47 203-249 23-69 (145)
472 PF04034 DUF367: Domain of unk 31.4 3E+02 0.0064 22.7 7.4 57 482-538 67-124 (127)
473 KOG2659 LisH motif-containing 30.9 4.2E+02 0.0091 24.4 8.7 55 451-506 70-128 (228)
474 PRK11639 zinc uptake transcrip 30.9 2.4E+02 0.0053 24.6 7.3 50 202-251 27-76 (169)
475 KOG0686 COP9 signalosome, subu 30.6 5.9E+02 0.013 25.9 12.6 60 170-229 151-216 (466)
476 PLN03192 Voltage-dependent pot 30.3 8.8E+02 0.019 27.8 14.0 31 121-151 540-572 (823)
477 COG5108 RPO41 Mitochondrial DN 30.3 2.2E+02 0.0047 30.7 7.6 74 139-212 33-115 (1117)
478 COG5191 Uncharacterized conser 30.0 1.3E+02 0.0028 29.0 5.5 68 510-577 104-172 (435)
479 cd08326 CARD_CASP9 Caspase act 29.7 2.5E+02 0.0053 21.2 6.4 38 282-319 42-79 (84)
480 cd08326 CARD_CASP9 Caspase act 28.9 2.5E+02 0.0053 21.2 6.0 38 390-427 41-78 (84)
481 COG5187 RPN7 26S proteasome re 28.5 3.2E+02 0.007 26.1 7.7 27 480-506 114-140 (412)
482 PF11768 DUF3312: Protein of u 28.2 3.3E+02 0.0072 28.7 8.6 57 173-229 412-473 (545)
483 PF10255 Paf67: RNA polymerase 28.0 3.5E+02 0.0077 27.6 8.6 55 519-573 128-190 (404)
484 KOG0991 Replication factor C, 27.7 5E+02 0.011 24.1 12.9 57 398-456 227-283 (333)
485 PF07575 Nucleopor_Nup85: Nup8 27.6 8.1E+02 0.018 26.5 12.5 26 99-125 149-174 (566)
486 COG0735 Fur Fe2+/Zn2+ uptake r 27.5 3.4E+02 0.0075 22.9 7.4 47 304-350 23-69 (145)
487 KOG0376 Serine-threonine phosp 27.4 68 0.0015 32.8 3.5 57 521-577 12-68 (476)
488 cd07153 Fur_like Ferric uptake 27.3 1.3E+02 0.0028 24.1 4.7 44 105-148 6-49 (116)
489 PF09986 DUF2225: Uncharacteri 27.2 4.9E+02 0.011 23.8 10.2 23 486-508 170-192 (214)
490 PF11817 Foie-gras_1: Foie gra 27.0 2.2E+02 0.0048 26.8 6.8 17 455-471 188-204 (247)
491 COG5108 RPO41 Mitochondrial DN 26.2 4.9E+02 0.011 28.2 9.3 87 384-473 33-131 (1117)
492 PF14669 Asp_Glu_race_2: Putat 25.8 4.9E+02 0.011 23.3 14.5 104 292-405 98-207 (233)
493 PF03745 DUF309: Domain of unk 25.8 1.5E+02 0.0033 20.7 4.1 34 110-143 10-43 (62)
494 PRK11639 zinc uptake transcrip 25.7 2.5E+02 0.0053 24.6 6.4 40 106-145 32-71 (169)
495 KOG3636 Uncharacterized conser 25.5 6E+02 0.013 26.0 9.3 86 437-524 175-271 (669)
496 KOG1498 26S proteasome regulat 25.0 7.3E+02 0.016 25.1 17.8 190 379-597 52-262 (439)
497 PF14044 NETI: NETI protein 24.9 67 0.0015 21.8 2.0 17 613-629 10-26 (57)
498 PF09454 Vps23_core: Vps23 cor 24.5 1.7E+02 0.0037 20.7 4.2 46 410-456 8-53 (65)
499 KOG0687 26S proteasome regulat 24.4 6.9E+02 0.015 24.6 13.6 93 379-473 104-209 (393)
500 PF10475 DUF2450: Protein of u 24.3 4.5E+02 0.0097 25.5 8.6 50 278-329 106-155 (291)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-94 Score=806.92 Aligned_cols=616 Identities=36% Similarity=0.647 Sum_probs=592.7
Q ss_pred CCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHH
Q 048281 27 NHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMI 106 (660)
Q Consensus 27 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li 106 (660)
...|+..+|+.+|++|...+++..+.++|..|.+.|+.|++.++|+||++|+++|+++.|.++|+ .++.||+.+||++|
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~-~m~~~d~~s~n~li 260 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD-RMPRRDCISWNAMI 260 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh-cCCCCCcchhHHHH
Confidence 45566667777777777777777777777777777777788888999999999999999999999 88999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChH
Q 048281 107 SGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 186 (660)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++||.+|+++|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCC
Q 048281 187 EALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGY 266 (660)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 266 (660)
+|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+
T Consensus 341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 048281 267 DSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPAC 346 (660)
Q Consensus 267 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 346 (660)
.|+..++++|+++|+++|++++|.++|++|.++|+++|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 6999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 048281 347 SHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQG 426 (660)
Q Consensus 347 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 426 (660)
++.|+++.+.+++..+.+.|+.++ ..++|+|+++|+++|++++|.++|+.+ .+|+.+||+||.+|+++|+.
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~--------~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFD--------GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCcc--------ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCH
Confidence 999999999999999999999998 999999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 427 KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++++++|+++|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996679999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEE
Q 048281 507 MPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSW 586 (660)
Q Consensus 507 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 586 (660)
|+.+||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|+..|+|++|.++++.|++.|++++||+||
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCcccCceeeccCCChhhhhHhhhHHHHHhhc
Q 048281 587 IELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGDCCAGTLFDSDSTASGFEKHRLYLEEVIAK 654 (660)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (660)
+++++.+|.|..++.+||+..+|+..++.|..+|++.||.||+.... +.+.++.|..+.+++||||-
T Consensus 731 ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~ 797 (857)
T PLN03077 731 VEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAI 797 (857)
T ss_pred EEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999987544 55778899999999999984
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-84 Score=709.21 Aligned_cols=554 Identities=30% Similarity=0.532 Sum_probs=542.3
Q ss_pred CCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhH
Q 048281 93 LSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLG-VLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYI 171 (660)
Q Consensus 93 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 171 (660)
....++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.+++..|.+.|+.||..+
T Consensus 81 ~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 81 TQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred ccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 3445677899999999999999999999999998864 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 048281 172 GSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFF 251 (660)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 251 (660)
|+.|+.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 048281 252 KNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAG 331 (660)
Q Consensus 252 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 331 (660)
+.+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh
Q 048281 332 FQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVA 411 (660)
Q Consensus 332 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 411 (660)
+.||..||+.++.+|++.|+++.|.+++..+.+.|+.++ ..++++|+++|+++|++++|.++|++|.++|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d--------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--------IVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC--------eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDML 491 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 491 (660)
+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988779999999999999999
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 048281 492 GRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 571 (660)
++.|++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.++++++++.|++..+|..|+++|++.|+|++|.++++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCcccCceeeccCCChhhhhHhhhHHHHH
Q 048281 572 TMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGDCCAGTLFDSDSTASGFEKHRLYLEEV 651 (660)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 651 (660)
.|++.|+++.||++|+++.+.+|.|..++..||+..+++..+..+..+|++.||.||+.....+++.++.|..+.+++||
T Consensus 553 ~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsek 632 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEK 632 (697)
T ss_pred HHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred hhc
Q 048281 652 IAK 654 (660)
Q Consensus 652 ~~~ 654 (660)
||-
T Consensus 633 la~ 635 (697)
T PLN03081 633 LAI 635 (697)
T ss_pred HHH
Confidence 974
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-78 Score=675.29 Aligned_cols=543 Identities=30% Similarity=0.495 Sum_probs=521.5
Q ss_pred CCCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHH
Q 048281 26 FNHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAM 105 (660)
Q Consensus 26 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 105 (660)
.+.+|+..+|..++..|.+.+.++.|.++|..+.+.|..++...+|+|+++|++.|+++.|.++|+ .+++||+.+||.+
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~-~m~~~d~~~~n~l 158 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG-KMPERDLFSWNVL 158 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh-cCCCCCeeEHHHH
Confidence 455677778888888888888888888888888888888888899999999999999999999999 8899999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 048281 106 ISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFM 185 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 185 (660)
|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++||.+|+++|++
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhC
Q 048281 186 EEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMG 265 (660)
Q Consensus 186 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (660)
++|.++|++|+.+|.++||++|.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g 318 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 048281 266 YDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPA 345 (660)
Q Consensus 266 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 345 (660)
+.||..+|++|+.+|+++|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus 319 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 048281 346 CSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQ 425 (660)
Q Consensus 346 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 425 (660)
|++.|+++.|.++++.+.+.|+.++ ..++++|+++|+++|++++|.++|++|.++|+++|+.||.+|++.|+
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~--------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISY--------VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcc--------hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 048281 426 GKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELAL 505 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 505 (660)
.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999986 59999999999999999999999999999999995 999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-hCCCccCC
Q 048281 506 AMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMR-QQNVRKNP 582 (660)
Q Consensus 506 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 582 (660)
.+ ++|..+|++++.+|.++|+.++|.++|++|.+. .|+ ..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 549 ~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 549 SH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 98 689999999999999999999999999999885 564 5789999999999999999999999997 67887764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-65 Score=561.22 Aligned_cols=503 Identities=17% Similarity=0.196 Sum_probs=404.0
Q ss_pred CCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCC-CCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHH
Q 048281 28 HPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGI-IDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMI 106 (660)
Q Consensus 28 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li 106 (660)
++++...|..++..|.+.|+++.|.++|+.|.+.|+ .++..+++.++..|++.|.+++|.++|+ .++.||..+||.+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCCCCHHHHHHHH
Confidence 345566778888888888888888888888888885 5677777888888888888888888888 77778888888888
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChH
Q 048281 107 SGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 186 (660)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCC----CCCchhHHHHHHHHHhCCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCCchhHHHHHHH
Q 048281 187 EALKVFEELP----LRDVVLWNAMVNGYAQIGEFHKALEVFRRMSK--EGIWMSRFTVTGVLSALIMMGFFKNGRVVHGI 260 (660)
Q Consensus 187 ~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 260 (660)
+|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888885 46888888888888888888888888888865 56788888888888888888888888888888
Q ss_pred HHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH
Q 048281 261 VVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE----KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL 336 (660)
Q Consensus 261 ~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 336 (660)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 88888888888888888888888888888888888864 57778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCHhH
Q 048281 337 VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS----KKDVAS 412 (660)
Q Consensus 337 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~ 412 (660)
.+|+.+|.+|++.|+++.|.++|+.|...|+.|+ ..+|+.||.+|++.|++++|.++|++|. .||..+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--------vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--------VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 8888888888888888888888888888787777 8888888888888888888888888775 478888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----c-------------------CCHHHHHHHHH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH----S-------------------GFLSQGREFLP 469 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~ 469 (660)
|+.++.+|++.|+.++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 888888888888888888888888888888888888887765432 1 11355777777
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 470 LMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN---EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
+|.+. |+.||..+|+.++.++.+.+..+.+..+++.|.. .|+..+|++++.++.+. .++|..++++|.+.
T Consensus 837 eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 837 ETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 77774 7777777777777777777777777777776643 35566777777776322 35677777777664
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.8e-66 Score=562.53 Aligned_cols=504 Identities=17% Similarity=0.198 Sum_probs=466.0
Q ss_pred CCCChhHHHHHHHHhHcCCChhHHHHHHccCCCC-----CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccH
Q 048281 63 IIDSPLSITSLINMYSKCCQMKYALFVFNNLSCE-----PNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTF 137 (660)
Q Consensus 63 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 137 (660)
..++...|..+++.+++.|++++|+++|+ .|+. ++...++.++.+|.+.|..++|+.+|+.|.. ||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd-~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLE-DMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 45678899999999999999999999999 5443 4555677888899999999999999999974 899999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC----CCCchhHHHHHHHHHhC
Q 048281 138 PCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP----LRDVVLWNAMVNGYAQI 213 (660)
Q Consensus 138 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 213 (660)
+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|++++|.++|++|. .||..+|+++|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 57999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHH--hCCCCCchHHHHHHHHHHcCCCHHHHHH
Q 048281 214 GEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVK--MGYDSGVPVMNALIDMYGKGKCVGEALE 291 (660)
Q Consensus 214 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~~~~~~A~~ 291 (660)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+ .|+.||..+|++++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHHhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCc
Q 048281 292 IFEMMEE----KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGL 367 (660)
Q Consensus 292 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 367 (660)
+|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048281 368 AKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS----KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP 443 (660)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (660)
.++ ..+|++||.+|+++|++++|.++|++|. .||..+||.||.+|++.|++++|+++|++|...|+.|
T Consensus 681 ~pd--------~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 681 KLG--------TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred CCC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 998 9999999999999999999999999995 6899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh----hcC-------------------CHHHH
Q 048281 444 DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG----RAG-------------------QLNEA 500 (660)
Q Consensus 444 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g-------------------~~~~A 500 (660)
|..||+.++.+|++.|++++|.++|++|.+. |+.||..+|++++.++. +++ ..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999995 99999999999997643 222 24679
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 501 YELALAMPN---EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL-EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 501 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+|++|.. .||..+|+.++.++...+..+.+..+++.+... .+.+..+|..|++.+.+. .++|..++++|...
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 999999876 699999999998888888888888888776432 445567899999887332 36899999999999
Q ss_pred CCccCC
Q 048281 577 NVRKNP 582 (660)
Q Consensus 577 ~~~~~~ 582 (660)
|+.|+.
T Consensus 910 Gi~p~~ 915 (1060)
T PLN03218 910 GVVPSV 915 (1060)
T ss_pred CCCCCc
Confidence 998875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-64 Score=550.04 Aligned_cols=442 Identities=20% Similarity=0.364 Sum_probs=426.3
Q ss_pred CCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHH
Q 048281 27 NHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMI 106 (660)
Q Consensus 27 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li 106 (660)
+.+|+..+|+.++.+|.+.++++.|.++|..|.+.|+.|++.+||.|+++|++.|+++.|.++|+ .++.||..+||++|
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~-~m~~~~~~t~n~li 196 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD-EMPERNLASWGTII 196 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHh-cCCCCCeeeHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999 88899999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChH
Q 048281 107 SGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 186 (660)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..++++||++|+++|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCC
Q 048281 187 EALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGY 266 (660)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 266 (660)
+|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~ 356 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 048281 267 DSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPAC 346 (660)
Q Consensus 267 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 346 (660)
.||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHH-hCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC-CCCHhHHHHHHHHHHhcC
Q 048281 347 SHLAALMHGRQIHGYIVV-NGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS-KKDVASWNIMILGYGMDG 424 (660)
Q Consensus 347 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g 424 (660)
++.|.+++|.++|+.|.+ .|+.|+ ..+|+.++++|++.|++++|.+++++|. .|+..+|++|+.+|..+|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~--------~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g 508 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPR--------AMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK 508 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCC--------ccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999986 588888 9999999999999999999999999997 789999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 048281 425 QGKEALDMFSCMCEAKLKPD-EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT 480 (660)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 480 (660)
+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.++ |+...
T Consensus 509 ~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 509 NLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred CcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 99999999999875 4554 678999999999999999999999999985 77543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8e-32 Score=308.73 Aligned_cols=530 Identities=12% Similarity=0.014 Sum_probs=361.5
Q ss_pred CCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccC--CCCCCcccHHHHH
Q 048281 29 PFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNL--SCEPNVFTYNAMI 106 (660)
Q Consensus 29 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li 106 (660)
|.+...+..+...+...|+++.|...+..+.... +.+...+..+...|.+.|++++|.+.|++. ..+.+...|..+.
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 404 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3445566677777788888888888888777654 345667777888888888888888888742 2233455677777
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChH
Q 048281 107 SGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 186 (660)
..+...|++++|+..|+.+.+.... +......++..+.+.|++++|..+++.+.+.. +.+..++..+...|...|+++
T Consensus 405 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 482 (899)
T TIGR02917 405 ISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLA 482 (899)
T ss_pred HHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHH
Confidence 7777888888888888877765432 23344556667777777777777777776643 345667777777777777777
Q ss_pred HHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 048281 187 EALKVFEELPL---RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVK 263 (660)
Q Consensus 187 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 263 (660)
+|...|+++.. .+...+..+...+...|++++|.+.++++...+ +.+..++..+...+...|+.++|...+..+.+
T Consensus 483 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777776542 245566667777777777777777777776643 23455666677777777777777777777766
Q ss_pred hCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHH
Q 048281 264 MGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFS 340 (660)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 340 (660)
.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 562 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 639 (899)
T TIGR02917 562 LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALL 639 (899)
T ss_pred hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 54 33455666677777777777777777777653 245667777777777777777777777776542 22444566
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 048281 341 TVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMI 417 (660)
Q Consensus 341 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 417 (660)
.+...+...|+++.|...++.+....... ...+..++..+...|++++|.++++.+.+ .+...+..+.
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 710 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDN---------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHH
Confidence 66666777777777777777776654333 56667777777777777777777776652 3455666667
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQL 497 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 497 (660)
..+...|++++|+..|+++... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|++
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCH
Confidence 7777777777777777777764 34445666666677777777777777777765 3445566677777777777777
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 498 NEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 498 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
++|...|+++.. ++++.+++.++..+...|+ ++|+..+++++++.|+++..+..++.++...|++++|.++++++.+
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777776543 3456666777777777777 6677777777777777766666777777777777777777777766
Q ss_pred CCC
Q 048281 576 QNV 578 (660)
Q Consensus 576 ~~~ 578 (660)
.+.
T Consensus 866 ~~~ 868 (899)
T TIGR02917 866 IAP 868 (899)
T ss_pred hCC
Confidence 543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-31 Score=306.00 Aligned_cols=524 Identities=12% Similarity=0.012 Sum_probs=411.7
Q ss_pred hhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccC--CCCCCcccHHHHHHHHH
Q 048281 33 ATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNL--SCEPNVFTYNAMISGFY 110 (660)
Q Consensus 33 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~ 110 (660)
..+..+...+...|+++.|...+..+.+... .+...+..+...+.+.|+++.|...+++. ..+.+...|+.+...+.
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL 374 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444555667788888888888888877653 35566777788888889999998888742 23345667888888888
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHH
Q 048281 111 SNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALK 190 (660)
Q Consensus 111 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 190 (660)
+.|++++|..+|+++.+... .+...+..+...+...|++++|...++.+.+.... .......++..+.+.|++++|..
T Consensus 375 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 375 ALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHH
Confidence 88999999999888877532 24556777777788888899898888888876533 33455667788888899999988
Q ss_pred HHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCC
Q 048281 191 VFEELPL---RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYD 267 (660)
Q Consensus 191 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 267 (660)
+++.+.. .+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +
T Consensus 453 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 453 AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 8887753 356778888888888899999999998887643 2344566777788888889999998888888765 3
Q ss_pred CCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 048281 268 SGVPVMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLP 344 (660)
Q Consensus 268 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 344 (660)
.+..++..+...|.+.|+.++|..+|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4667788888888888999999888888754 245667788888888899999999988887653 445677888888
Q ss_pred HHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHH
Q 048281 345 ACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYG 421 (660)
Q Consensus 345 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 421 (660)
.+...|+++.|...++.+.+..... ...+..+...|.+.|++++|...|+++. ..+..+|..++..+.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDS---------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 8888899999998888887765433 6677888888888899999998888765 335678888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 048281 422 MDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAY 501 (660)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 501 (660)
..|++++|..+++.+.+.+ +++...+..+...+...|++++|...++.+.. ..|+..++..++.++.+.|++++|.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHH
Confidence 8899999999998888764 45666777777888888999999999888876 2355577778888888899999998
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 502 ELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 502 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+.++++.. +.+...+..+...|...|+.++|...|+++++..|+++..+..+++++...|+ .+|+.+++++.+.
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88887643 45677888888888888999999999999988888888888888899888888 8888888888664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.1e-22 Score=233.55 Aligned_cols=521 Identities=11% Similarity=0.032 Sum_probs=375.6
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHH-HHhHcCCChhHHHHHHccCC--CCCCcccHHHHHHHHHcC
Q 048281 36 IASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLI-NMYSKCCQMKYALFVFNNLS--CEPNVFTYNAMISGFYSN 112 (660)
Q Consensus 36 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~ 112 (660)
..+...+...|++++|.+.++.+.+... |+........ ......|+.++|++.|++.. .+.+...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 3444567888999999999999887643 3322111122 22234589999999998522 233556678888889999
Q ss_pred CChhHHHHHHHHHHHCCC------------------C--------------CCcccH---------------------HH
Q 048281 113 DFAFKGLDFFNHMRQLGV------------------L--------------PDKYTF---------------------PC 139 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~~------------------~--------------p~~~t~---------------------~~ 139 (660)
|+.++|+..|+++.+... . |+...+ ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999988754321 0 111000 01
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCC--CCc---hhHHHH--------
Q 048281 140 LIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPL--RDV---VLWNAM-------- 206 (660)
Q Consensus 140 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l-------- 206 (660)
....+...|++++|+..+++.++... .+...+..|..+|.+.|++++|...|++..+ |+. ..|..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 12334566888888888888887642 3567777888888888888888888877653 211 122221
Q ss_pred ----HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 048281 207 ----VNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGK 282 (660)
Q Consensus 207 ----i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (660)
...+.+.|++++|++.|++..... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 335667888888888888887753 2344566667778888888888888888887764 233455666666664
Q ss_pred CCCHHHHHHHHHhcCCCC------------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHhcc
Q 048281 283 GKCVGEALEIFEMMEEKD------------IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPD-LVTFSTVLPACSHL 349 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 349 (660)
.++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 456788888887765321 123455667788899999999999999876 454 44566777888999
Q ss_pred cchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CH---------hHHHHH
Q 048281 350 AALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK----DV---------ASWNIM 416 (660)
Q Consensus 350 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l 416 (660)
|++++|...++.+.+..... ...+..+...+...++.++|...++.+... +. ..+..+
T Consensus 509 G~~~~A~~~l~~al~~~P~~---------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPND---------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 99999999999988765433 445555666677889999999999987632 11 112345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+.+.+ .-+.+...+..++.+|...|+
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCC
Confidence 6678899999999999872 245556677788889999999999999999987 344567889999999999999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhCCChHHHHH
Q 048281 497 LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG------NYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 497 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~ 568 (660)
+++|++.++.... +.+...+..+..++...|++++|.+.++++++..|+++. .+..++.++...|++++|..
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998765 345667888889999999999999999999998765543 56677999999999999999
Q ss_pred HHHHHHh-CCCc
Q 048281 569 IRHTMRQ-QNVR 579 (660)
Q Consensus 569 ~~~~~~~-~~~~ 579 (660)
.+++... .|+.
T Consensus 733 ~y~~Al~~~~~~ 744 (1157)
T PRK11447 733 TYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhcCCC
Confidence 9998853 3453
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.7e-22 Score=231.89 Aligned_cols=522 Identities=10% Similarity=0.027 Sum_probs=288.5
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCC-CCCCcc-c-----------
Q 048281 35 CIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLS-CEPNVF-T----------- 101 (660)
Q Consensus 35 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~-~----------- 101 (660)
.....+.+...++.+.|.+.+.++..... .++.++..++..+.+.|+.++|.+.+++.. ..|+.. .
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 34444555555666666666665555432 244555555555566666666666555311 112111 1
Q ss_pred -----HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 048281 102 -----YNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKY-TFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSAL 175 (660)
Q Consensus 102 -----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 175 (660)
.-.+.+.+...|++++|+..|+.+.+.. +|+.. ............|+.++|+..++.+.+..+ -+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 1122234555566666666666655432 12211 011111111233556666666666655432 234445555
Q ss_pred HHHhHhcCChHHHHHHHccCCCCC-----------------------chhH-----------------------------
Q 048281 176 VNTYLKCQFMEEALKVFEELPLRD-----------------------VVLW----------------------------- 203 (660)
Q Consensus 176 i~~~~~~g~~~~A~~~~~~~~~~~-----------------------~~~~----------------------------- 203 (660)
...+...|+.++|...|+++.... ...+
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 555555666666655555432100 0000
Q ss_pred -----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC-chHH----
Q 048281 204 -----NAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSG-VPVM---- 273 (660)
Q Consensus 204 -----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~---- 273 (660)
......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++...+...... ...+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 011233455667777777777666532 12445566666666677777777777766665532211 1111
Q ss_pred --------HHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-HHHHHH
Q 048281 274 --------NALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPD-LVTFST 341 (660)
Q Consensus 274 --------~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 341 (660)
......+.+.|++++|+..|++..+ .+...+..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 1123445566777777777766654 23445566666677777777777777766654 232 222222
Q ss_pred HHH------------------------------------------HHhcccchHHHHHHHHHHHHhCccCCCCCCCCcch
Q 048281 342 VLP------------------------------------------ACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDV 379 (660)
Q Consensus 342 ll~------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 379 (660)
+.. .+...|++++|...++.+++..+.. .
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~---------~ 495 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS---------V 495 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------H
Confidence 222 2334455555555555555444332 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------H
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSK--K-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV---------T 447 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~ 447 (660)
.++..+...|.+.|++++|...|+++.+ | +...+..+...+...++.++|+..++++......++.. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 4455555555555555555555555431 1 33333333344445555555555555443221111111 1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRL 525 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 525 (660)
+......+...|+.++|..+++. .+.+...+..+...|.+.|++++|++.|+++.. +.++..+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 12234455666677777666651 234555677788888888999999888887654 4567788888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 526 HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
.|++++|++.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 8999999999998888888888888888888888999999999988887653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.2e-19 Score=198.91 Aligned_cols=513 Identities=8% Similarity=-0.031 Sum_probs=331.9
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCC-CCCCcccHHHHHHHHHcCCChhHHHHH
Q 048281 43 AHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLS-CEPNVFTYNAMISGFYSNDFAFKGLDF 121 (660)
Q Consensus 43 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~ 121 (660)
...|++++|...|+..++..+.. +.++..|...|.+.|++++|+..+++.. ..|+-..|..++..+ +++.+|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 34488888888888888876443 7777888888888888888888887421 223222222222222 555566666
Q ss_pred HHHHHHCC--------------------------------------CCCCcccHHHH-HHHHhhhCCHHHHHHHHHHHHH
Q 048281 122 FNHMRQLG--------------------------------------VLPDKYTFPCL-IKCCCDVMAVLEVKKIHGLVFK 162 (660)
Q Consensus 122 ~~~m~~~~--------------------------------------~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~ 162 (660)
|+++.... ..|+..+.... .+.|...+++++|+.++..+.+
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 66654431 12223333333 6677788888889999988888
Q ss_pred hCCCCChhHHHHHHHHhHh-cCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CChhhHHH
Q 048281 163 LGLDLDVYIGSALVNTYLK-CQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIW-MSRFTVTG 240 (660)
Q Consensus 163 ~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~t~~~ 240 (660)
.+.. +......|..+|.. .++ +++..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |...++..
T Consensus 211 ~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 211 QNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred cCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 8643 34446666667777 366 88888877655568888999999999999999999999987543221 22222211
Q ss_pred H------------------------------HHHHHccCCchhHHHHHH-----------------------------HH
Q 048281 241 V------------------------------LSALIMMGFFKNGRVVHG-----------------------------IV 261 (660)
Q Consensus 241 l------------------------------l~~~~~~~~~~~a~~~~~-----------------------------~~ 261 (660)
. +..+.+.++++.++++.. .+
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence 1 233344444444443321 11
Q ss_pred HHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC-C-----ChhhHHHHHHHHHHcCC---hHHHHHH---------
Q 048281 262 VKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE-K-----DIFSWNSIMTVHEQCGN---HDGTLRL--------- 323 (660)
Q Consensus 262 ~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~~a~~~--------- 323 (660)
.+. .+.+....--+.-...+.|+.++|.++|+.... + +...-+-++..|.+.+. ..++..+
T Consensus 369 y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 369 YQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred Hhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 111 011333333334445678888999998888754 1 22234456666666655 3333322
Q ss_pred -------------HHHHhh-cCCCC---CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH
Q 048281 324 -------------FDRMLS-AGFQP---DLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM 386 (660)
Q Consensus 324 -------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 386 (660)
+..... .+..| +...+..+..++.. +++++|...+.......+. ......+.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd----------~~~~L~lA 516 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD----------AWQHRAVA 516 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc----------hHHHHHHH
Confidence 111111 11223 34445555544444 7777788877766655432 22233445
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 048281 387 DMYTKCGSMRDAQMVFTKMSK--KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQG 464 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 464 (660)
..+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 555678888888888887652 344556667777888888888888888888753 22223333334445566888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 465 REFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
...+++..+ ..|+...+..+..++.+.|+.++|...+++... +.+...++.+..++...|+.++|+..+++++++
T Consensus 596 l~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888875 445677888888888888888888888887654 445667788888888888888888888888888
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 543 EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 543 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
.|+++..+..++.++...|++++|...+++..+..
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888876543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.8e-21 Score=186.67 Aligned_cols=437 Identities=12% Similarity=0.052 Sum_probs=319.0
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHH
Q 048281 108 GFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEE 187 (660)
Q Consensus 108 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 187 (660)
-..+.|++++|.+.-...-+.+.. +....-.+-..+.+..+.+...+--....+.. +--..+|+.+.+.+-..|++++
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHH
Confidence 334456666665544433332211 22222222233333334444333322222221 2234566666777767777777
Q ss_pred HHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH-HHHHHHccCCchhHHHHHHHHHH
Q 048281 188 ALKVFEELPLR---DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTG-VLSALIMMGFFKNGRVVHGIVVK 263 (660)
Q Consensus 188 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~ 263 (660)
|+.+++.+.+. .+..|-.+..++...|+.+.|.+.|.+..+ +.|+.....+ +-......|++.+|...+-+.+.
T Consensus 135 al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 135 ALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 77777665432 456677777777777777777777777765 3455543332 33334455777777777766665
Q ss_pred hCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH-HHH
Q 048281 264 MGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDI---FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL-VTF 339 (660)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~ 339 (660)
... .-...|+.|...+-..|+...|+..|++..+-|+ .+|-.|...|...+.+++|+..|.+.... .|+. ..+
T Consensus 213 ~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~ 289 (966)
T KOG4626|consen 213 TQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAH 289 (966)
T ss_pred hCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhc
Confidence 531 2345677788888888999999999888776433 57888888899999999999988887764 5654 466
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHH
Q 048281 340 STVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIM 416 (660)
Q Consensus 340 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 416 (660)
..+...|-..|.++.|...+++.+...+.. +..|+.|..++-..|++.+|.+.|++.. ..-..+.+.|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F---------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQPNF---------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcCCCc---------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 667777888899999999999988877666 7899999999999999999999999876 2345688999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhc
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPDE-VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI-EHYTCVIDMLGRA 494 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 494 (660)
...|...|.+++|..+|....+ +.|.- ..++.|...|-++|++++|+..|+++++ +.|+. ..|+.+...|...
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHh
Confidence 9999999999999999999987 45553 5678888899999999999999999974 77775 7899999999999
Q ss_pred CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHH
Q 048281 495 GQLNEAYELALAMPN-EA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 495 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 565 (660)
|+.+.|...+.+... .| -....+.|.+.|...|+..+|++.|+++++++|+.+.+|..++..+--..+|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999988654 33 356889999999999999999999999999999999999999887766555554
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.1e-19 Score=194.80 Aligned_cols=520 Identities=9% Similarity=-0.025 Sum_probs=357.1
Q ss_pred hHHHHHHHhhccCChhHHHHHHHHHHHhCCCCC--hhHHHHHHH--HhHcCCChhHHHHHHccC--CCCCCcccHHHHHH
Q 048281 34 TCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDS--PLSITSLIN--MYSKCCQMKYALFVFNNL--SCEPNVFTYNAMIS 107 (660)
Q Consensus 34 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~--~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~ 107 (660)
++..||-.|...+..- +..+-....+.++.+- -.++-.+.. .+...|++++|+..|+.. ..+-+...+..|.+
T Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~ 86 (987)
T PRK09782 8 GWSGLLLTSLLSTSAL-ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAE 86 (987)
T ss_pred CchHHHHHHHhccHhh-hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3444444444443332 3333334455555432 122223333 233459999999999952 33445778899999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH--------h
Q 048281 108 GFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNT--------Y 179 (660)
Q Consensus 108 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~ 179 (660)
.|...|++++|+..+++..+. .|+...|..++..+ ++.++|..+++++.+..+. +..++..+... |
T Consensus 87 ~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 87 AYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhh
Confidence 999999999999999999886 45555555555333 8999999999999997533 45555555555 7
Q ss_pred HhcCChHHHHHHHccCCCCC--chhHH-HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCCchhHH
Q 048281 180 LKCQFMEEALKVFEELPLRD--VVLWN-AMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIM-MGFFKNGR 255 (660)
Q Consensus 180 ~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~ 255 (660)
.+.++..+++. .+...++ ..... .+...|.+.+++++|++++.++.+.+.. +..-...+-.++.. .++ +.+.
T Consensus 161 ~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~ 236 (987)
T PRK09782 161 AQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLL 236 (987)
T ss_pred hhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHH
Confidence 77777777776 3333343 43344 4489999999999999999999997643 33335555556766 366 6666
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CChhh---------------------------
Q 048281 256 VVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE-----KDIFS--------------------------- 303 (660)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~--------------------------- 303 (660)
.+++. .+..+..++..++..|.+.|+.++|.++++++.. |...+
T Consensus 237 al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 237 ALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 66432 3346788888999999999999999988887642 00000
Q ss_pred ----------------HH--------------------------------------------------HHHHHHHHcCCh
Q 048281 304 ----------------WN--------------------------------------------------SIMTVHEQCGNH 317 (660)
Q Consensus 304 ----------------~~--------------------------------------------------~li~~~~~~g~~ 317 (660)
|. -+.-...+.|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence 00 001123456888
Q ss_pred HHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHhcccc---hHHH----------------------HHHHHHHHHhCccCC
Q 048281 318 DGTLRLFDRMLSA-G-FQPDLVTFSTVLPACSHLAA---LMHG----------------------RQIHGYIVVNGLAKN 370 (660)
Q Consensus 318 ~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~---~~~a----------------------~~~~~~~~~~~~~~~ 370 (660)
++|.++|+..... + ..++......++..+...+. ...+ ......+...-. .+
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-~~ 471 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG-DM 471 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc-cC
Confidence 9999999998762 1 23344444466666655544 2222 222222222211 10
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 048281 371 GSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTF 448 (660)
Q Consensus 371 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 448 (660)
+..-+...+..+..++.. ++.++|...|.+.. .|+......+...+...|++++|...|+++... .|+...+
T Consensus 472 ---p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 472 ---SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred ---CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 000017788888888887 89989999777765 344333333344456899999999999998664 5555666
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC
Q 048281 449 VGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRLHG 527 (660)
Q Consensus 449 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g 527 (660)
..+..++.+.|+.++|...++...+. . +.....+..+...+.+.|++++|...+++... .|+...|..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 67778889999999999999999873 2 33334444444555567999999999998664 578889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 528 NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+.++|+..++++++++|+++..+..++.++...|++++|+..+++..+..
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999987754
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-19 Score=176.52 Aligned_cols=418 Identities=11% Similarity=0.076 Sum_probs=337.2
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCC
Q 048281 139 CLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR---DVVLWNAMVNGYAQIGE 215 (660)
Q Consensus 139 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 215 (660)
.|..-..+.|++.+|++.-..+-... +.+....-.+-..+....+.+.....-....+. -..+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444557789999888665554432 222233333445566666776655433332222 45689999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCch-HHHHHHHHHHcCCCHHHHHHHH
Q 048281 216 FHKALEVFRRMSKEGIWMS-RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVP-VMNALIDMYGKGKCVGEALEIF 293 (660)
Q Consensus 216 ~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~A~~~~ 293 (660)
+++|+.+++.+++. .|+ ...|..+..++...|+.+.|.+.|.+.++.. |+.. ..+-+.......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999884 454 5589999999999999999999999888764 4433 3344555666688999999988
Q ss_pred HhcCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCccC
Q 048281 294 EMMEE--KD-IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL-VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAK 369 (660)
Q Consensus 294 ~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 369 (660)
.+..+ |. .++|+.|...+-..|+...|+..|++..+. .|+- ..|..+-..+...+.++.|...+..........
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 77654 32 368999999999999999999999999864 5654 467777788888888888888888877665554
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H
Q 048281 370 NGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--KK-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD-E 445 (660)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 445 (660)
..++..+...|-..|.++.|+..|++.. +| -...|+.|..++-..|++.+|...|.+.... .|+ .
T Consensus 286 ---------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~ha 354 (966)
T KOG4626|consen 286 ---------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHA 354 (966)
T ss_pred ---------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccH
Confidence 7788889999999999999999999876 34 3579999999999999999999999999985 444 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN-PVVWRTLLAA 522 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~ 522 (660)
...+.|...+...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+.-+++... +|. ...++.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 6788899999999999999999999865 4555 46789999999999999999999998654 454 5689999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
|...|+.+.|.+.+.+++..+|.-++++..|+.+|-..|+..+|+.-++...+..
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999999999987743
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.3e-18 Score=184.69 Aligned_cols=417 Identities=11% Similarity=-0.012 Sum_probs=270.0
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCC
Q 048281 139 CLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR---DVVLWNAMVNGYAQIGE 215 (660)
Q Consensus 139 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~ 215 (660)
.....+.+.|+++.|...|++.++. .|+...|..+..+|.+.|++++|+..++...+. +...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4444556666777777777666653 345556666666677777777777666655432 34466666667777777
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHh
Q 048281 216 FHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEM 295 (660)
Q Consensus 216 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 295 (660)
+++|+..|......+.. +......++..... ..+........+.. +.+...+..+.. |...........-+..
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 77777666555432211 11111111111110 11111111222211 122222222222 2111111111111111
Q ss_pred cCCCCh---hhHHHHHHHH---HHcCChHHHHHHHHHHhhcC-CCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCc
Q 048281 296 MEEKDI---FSWNSIMTVH---EQCGNHDGTLRLFDRMLSAG-FQPDL-VTFSTVLPACSHLAALMHGRQIHGYIVVNGL 367 (660)
Q Consensus 296 ~~~~~~---~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 367 (660)
..+.+. ..+..+...+ ...+++++|++.|++..+.+ ..|+. ..+..+...+...|+++.|...++..+....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 1111111111 23467889999999888764 33433 4566666677788999999999998887754
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048281 368 AKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD 444 (660)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 444 (660)
.. ...|..+...+...|++++|...|+... ..+...|..+...+...|++++|+..|++.++.. +.+
T Consensus 363 ~~---------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 363 RV---------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred Cc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 43 6678888899999999999999998765 3467789999999999999999999999999853 334
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-HH-------H
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN-PV-------V 515 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~-------~ 515 (660)
...+..+...+.+.|++++|+..++.+.+ ..+.+...+..+..+|...|++++|.+.|++... .|+ .. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 56677777888999999999999999987 3455678899999999999999999999988543 222 11 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 516 WRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
++..+..+...|++++|+..++++++++|++...+..++.++.+.|++++|.+++++..+.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2222233445699999999999999999999889999999999999999999999998664
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.5e-17 Score=168.96 Aligned_cols=526 Identities=13% Similarity=0.045 Sum_probs=372.4
Q ss_pred HHHHHHHhh--ccCChhHHHHHHHHHHHhCC--CCChhHHHHHHHHhHcCCChhHHHHHHccCCCCC---CcccHHHHHH
Q 048281 35 CIASLQLCA--HQTNLQKGQEIHSYMLRTGI--IDSPLSITSLINMYSKCCQMKYALFVFNNLSCEP---NVFTYNAMIS 107 (660)
Q Consensus 35 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~ 107 (660)
...|.++|. ..+++..|..+|...+.... .|++. ..+-.++.+.|+.+.|+..|. ...+. ++.++-.|--
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~-ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE-RALQLDPTCVSALVALGE 241 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH-HHHhcChhhHHHHHHHHH
Confidence 344556665 45689999999999766653 34443 334466778999999999998 43332 3333332222
Q ss_pred HHHcCC---ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhHhc
Q 048281 108 GFYSND---FAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDL--DVYIGSALVNTYLKC 182 (660)
Q Consensus 108 ~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~ 182 (660)
.-.... .+..++.++...-.... -|+...+.|.+.+...|++..+..+...+......- -...|--+..+|-..
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 222333 34456666655544332 367788889999999999999999999888764221 123466688899999
Q ss_pred CChHHHHHHHccCCCC--C--chhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccC----Cchh
Q 048281 183 QFMEEALKVFEELPLR--D--VVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMS-RFTVTGVLSALIMMG----FFKN 253 (660)
Q Consensus 183 g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~----~~~~ 253 (660)
|++++|...|.+.... | +..+--|...|.+.|+++.+...|+...+. .|| ..|...+...|+..+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999998776543 2 344556788899999999999999999874 344 456777777777664 3455
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHH------HHHHHHHhc-CCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 048281 254 GRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVG------EALEIFEMM-EEKDIFSWNSIMTVHEQCGNHDGTLRLFDR 326 (660)
Q Consensus 254 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~------~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 326 (660)
|..++....+.- +.|...|-.+...|-....+. .|..++..- ....+...|.+...+...|++.+|...|..
T Consensus 399 a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 399 ASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 555555555443 456777877777776654433 333333222 235677889999999999999999999988
Q ss_pred Hhhc---CCCCCH------HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHH
Q 048281 327 MLSA---GFQPDL------VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRD 397 (660)
Q Consensus 327 m~~~---g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 397 (660)
.... -..+|. .+--.+.......++.+.|.+.+..+.+..+.. +..|-.++.+....+...+
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y---------Id~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY---------IDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh---------HHHHHHhhHHHHhccCcHH
Confidence 7754 123333 122234445566778999999999998876554 4555555544445577788
Q ss_pred HHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------cCCH
Q 048281 398 AQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAK-LKPDEVTFVGVLSACSH------------SGFL 461 (660)
Q Consensus 398 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~ 461 (660)
|...+.... ..++..|..+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.+ .+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 888888765 4577788888888888888888888777666542 24677777777665533 2456
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048281 462 SQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRV 539 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (660)
++|+++|.++++ ..+.|...-+.+.-+++..|++.+|..+|.++.+ ..+..+|-.+..+|...|++..|+++|+..
T Consensus 629 ~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 788899998887 5666777778888889999999999999998765 235678999999999999999999999999
Q ss_pred Hhc--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 540 FQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 540 ~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
++. ..+++.....|++++.+.|+|.+|.+.+.......+
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 886 345677888999999999999999999888766543
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=9.7e-19 Score=179.38 Aligned_cols=292 Identities=12% Similarity=0.084 Sum_probs=197.6
Q ss_pred HHcCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHhcccchH
Q 048281 280 YGKGKCVGEALEIFEMMEEK---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPD---LVTFSTVLPACSHLAALM 353 (660)
Q Consensus 280 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~ 353 (660)
+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555555431 223455555555555555555555555554321111 123444455555556666
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--------HhHHHHHHHHHHhcCC
Q 048281 354 HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKD--------VASWNIMILGYGMDGQ 425 (660)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~ 425 (660)
.|..++..+.+..... ..+++.++..|.+.|++++|.+.++.+.+.+ ...|..++..+.+.|+
T Consensus 125 ~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 125 RAEELFLQLVDEGDFA---------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHHHHHHHcCCcch---------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 6666665555432211 4556666666666677777766666654211 1235567777888899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 048281 426 GKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELAL 505 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 505 (660)
+++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......++..++.+|...|++++|...++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988753 233556777778888999999999999998763 222224567888999999999999999998
Q ss_pred hCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---CCChHHHHHHHHHHHhCCCccC
Q 048281 506 AMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVA---GGKYEEVLDIRHTMRQQNVRKN 581 (660)
Q Consensus 506 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 581 (660)
++.. .|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.+++..++++|.++++.++
T Consensus 274 ~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 274 RALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 8654 56766778889999999999999999999999999875 45555555443 5689999999999999999888
Q ss_pred Cc
Q 048281 582 PG 583 (660)
Q Consensus 582 ~~ 583 (660)
|.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 86
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.3e-16 Score=175.42 Aligned_cols=393 Identities=9% Similarity=0.010 Sum_probs=198.0
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCCh
Q 048281 140 LIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP---LRDVVLWNAMVNGYAQIGEF 216 (660)
Q Consensus 140 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 216 (660)
.+......|+.++|++++..+.... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3344444455555555555444311 2223334455555555555555555555532 12334444555555555555
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhc
Q 048281 217 HKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMM 296 (660)
Q Consensus 217 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 296 (660)
++|+..+++..+.. +.+.. +..+..++...|+.+.|...++.+.+.. +.+...+..+..++...+..+.|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 55555555555431 11222 4444445555555555555555555543 223334445566666666677777766665
Q ss_pred CCCChh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHhhc-CCCCCHH-HHHHHHHHHhcccchHHHHHH
Q 048281 297 EEKDIF--------SWNSIMTVHE-----QCGNH---DGTLRLFDRMLSA-GFQPDLV-TFSTVLPACSHLAALMHGRQI 358 (660)
Q Consensus 297 ~~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 358 (660)
.. ++. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~------------------ 237 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ------------------ 237 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH------------------
Confidence 54 111 0111111111 11112 4445555554432 1112111 000
Q ss_pred HHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---H-hHHHHHHHHHHhcCChHHHHHHHH
Q 048281 359 HGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKD---V-ASWNIMILGYGMDGQGKEALDMFS 434 (660)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~ 434 (660)
......+.++...|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+
T Consensus 238 ---------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 238 ---------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred ---------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 000111122234455666666666555321 1 111113455666666666666666
Q ss_pred HHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHhhcCCHH
Q 048281 435 CMCEAKLKP---DEVTFVGVLSACSHSGFLSQGREFLPLMESRYG----------VVPT---IEHYTCVIDMLGRAGQLN 498 (660)
Q Consensus 435 ~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~ 498 (660)
++....... .......+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 655432110 012344444455666666666666666654210 0122 123455666667777777
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 499 EAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 499 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+|++.++++.. +.+...+..++..+...|+.++|++.++++++++|+++..+..++..+...|++++|..+++.+.+.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777776543 3455667777777777777777777777777777777777777777777777777777777776553
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=7.1e-18 Score=173.00 Aligned_cols=289 Identities=13% Similarity=0.063 Sum_probs=196.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC---chHHHHHHHHHHcCCCH
Q 048281 210 YAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSG---VPVMNALIDMYGKGKCV 286 (660)
Q Consensus 210 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~~~~ 286 (660)
+...|++++|+..|.++.+.+. .+..++..+...+...|+++.|..+++.+.+.+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455566666666666655321 1223444455555555555555555555444321111 13455566666666666
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 048281 287 GEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIV 363 (660)
Q Consensus 287 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 363 (660)
++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------ 179 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------------ 179 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH------------------------
Confidence 667666666654 24455666666666666666666666666654322211100
Q ss_pred HhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048281 364 VNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAK 440 (660)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (660)
...+..+...+.+.|++++|...|+++.+ .+...+..++..+.+.|++++|.++|+++.+.+
T Consensus 180 ---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 180 ---------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred ---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 23445667777888888888888887652 245678888899999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHH
Q 048281 441 LKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTL 519 (660)
Q Consensus 441 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l 519 (660)
......++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.. .|+...++.+
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l 321 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRL 321 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 2223456788889999999999999999998763 46667778899999999999999999987654 6888889988
Q ss_pred HHHHHH---cCChHHHHHHHHHHHh
Q 048281 520 LAASRL---HGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 520 ~~~~~~---~g~~~~A~~~~~~~~~ 541 (660)
+..+.. .|+.+++...++++++
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHH
Confidence 887765 5688899988888876
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=6.2e-17 Score=174.06 Aligned_cols=352 Identities=11% Similarity=-0.028 Sum_probs=259.8
Q ss_pred hcCChHHHHHHHccCCCC------CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhH
Q 048281 181 KCQFMEEALKVFEELPLR------DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNG 254 (660)
Q Consensus 181 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 254 (660)
+..+++.-.-.|...++. +......++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 344444444444444321 23334556677788888888888888887764333 33444455666678888888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 048281 255 RVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--K-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAG 331 (660)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 331 (660)
...++.+.+.. +.+...+..+...+.+.|++++|...+++..+ | +...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888887764 34556777888888899999999999888765 3 55678888888999999999999998887653
Q ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---C
Q 048281 332 FQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---K 408 (660)
Q Consensus 332 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 408 (660)
|+.......+..+...|++++|...++.+........ ......+...+.+.|++++|...|++... .
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~--------~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALER--------QESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc--------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3322222223346778999999998888776643332 44455667788899999999999988763 3
Q ss_pred CHhHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 048281 409 DVASWNIMILGYGMDGQGKE----ALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHY 484 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 484 (660)
+...+..+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 56788889999999999885 899999998853 334567888888999999999999999998872 33445677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 485 TCVIDMLGRAGQLNEAYELALAMPN-EANPVV-WRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 485 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
..+..+|.+.|++++|...++++.. .|+... +..+..++...|+.++|+..|+++++..|++.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 8889999999999999999988764 455433 44456788999999999999999999998864
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.4e-16 Score=160.00 Aligned_cols=522 Identities=13% Similarity=0.045 Sum_probs=378.7
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHc---CCChhHHHHHHcc--CCCCCCcccHHHHHHHHHcCCC
Q 048281 40 QLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSK---CCQMKYALFVFNN--LSCEPNVFTYNAMISGFYSNDF 114 (660)
Q Consensus 40 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~~~~ 114 (660)
..+...++.+.|...|.+.+.... -++.++-.|--.-.. ...+..+..++.. ....-|++..+.|-.-|.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc
Confidence 334677889999999999888653 122222222211111 2345555666552 1345678889999999999999
Q ss_pred hhHHHHHHHHHHHCCCC--CCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHH
Q 048281 115 AFKGLDFFNHMRQLGVL--PDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVF 192 (660)
Q Consensus 115 ~~~a~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 192 (660)
+..++.+...+...... .-...|..+.+++-..|++++|..+|.+..+....--...+--|..+|.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 99999999999875311 1234588899999999999999999988877543222344456889999999999999999
Q ss_pred ccCCCC---CchhHHHHHHHHHhCC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHH----
Q 048281 193 EELPLR---DVVLWNAMVNGYAQIG----EFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIV---- 261 (660)
Q Consensus 193 ~~~~~~---~~~~~~~li~~~~~~~----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~---- 261 (660)
+.+... +..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-...-+.. ..++..+
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L 443 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDIL 443 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence 998643 4556666666666664 4567777777766542 3456677766666665544443 6666544
Q ss_pred HHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------Ch------hhHHHHHHHHHHcCChHHHHHHHHHHh
Q 048281 262 VKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEK-------DI------FSWNSIMTVHEQCGNHDGTLRLFDRML 328 (660)
Q Consensus 262 ~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 328 (660)
...+-.+.+.+.|.+...+...|++++|...|...... +. ..-..+...+-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45566688889999999999999999999999876432 22 123345566666789999999999999
Q ss_pred hcCCCCCHH-HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC-
Q 048281 329 SAGFQPDLV-TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS- 406 (660)
Q Consensus 329 ~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 406 (660)
+. .|.-. .|..+....-..+....|...+..+....-.. +.+++.+.+.|.+...+..|.+-|..+.
T Consensus 524 ke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n---------p~arsl~G~~~l~k~~~~~a~k~f~~i~~ 592 (1018)
T KOG2002|consen 524 KE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN---------PNARSLLGNLHLKKSEWKPAKKKFETILK 592 (1018)
T ss_pred HH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC---------cHHHHHHHHHHHhhhhhcccccHHHHHHh
Confidence 76 56654 33333323334567788888888776654433 6788888889999999988888666554
Q ss_pred ----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048281 407 ----KKDVASWNIMILGYGM------------DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPL 470 (660)
Q Consensus 407 ----~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 470 (660)
.+|..+.-+|.+.|.+ .+..++|+++|.+.+... +-|...-+.+.-.++..|++..|..+|.+
T Consensus 593 ~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 593 KTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred hhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 2355555555554432 345788999999998864 44667777777889999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 471 MESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN----EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
+.+. ......+|-.+.++|..+|++-.|+++|+.... +.++.+...|..++...|.+.+|.+.+..++.+.|.+
T Consensus 672 VrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 672 VREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 9984 334456889999999999999999999987533 4678899999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh-------------------CCChHHHHHHHHHHHhCCC
Q 048281 547 CGNYVLMSNIYVA-------------------GGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 547 ~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~~~~~~~ 578 (660)
+.....++-+..+ .+..++|.++|..+...+-
T Consensus 750 ~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 750 TSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred chHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8877766655443 2467788888888866543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=5.4e-16 Score=167.53 Aligned_cols=421 Identities=11% Similarity=-0.056 Sum_probs=293.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh
Q 048281 102 YNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLK 181 (660)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 181 (660)
+......+.+.|++++|+..|++..+ +.|+...|..+..++.+.|++++|...++..++... .+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34566788899999999999999886 467888899999999999999999999999988642 345688889999999
Q ss_pred cCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHH
Q 048281 182 CQFMEEALKVFEELPLR---DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVH 258 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 258 (660)
.|++++|...|...... +......++..+.. ..+........+.. +++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 99999999877654321 11111122221111 22233333333221 122122222222 21111111111111
Q ss_pred HHHHHhCCCCCc-hHHHHHHHH---HHcCCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHh
Q 048281 259 GIVVKMGYDSGV-PVMNALIDM---YGKGKCVGEALEIFEMMEEK------DIFSWNSIMTVHEQCGNHDGTLRLFDRML 328 (660)
Q Consensus 259 ~~~~~~g~~~~~-~~~~~li~~---~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 328 (660)
....+ ..+.. ..+..+... ....+.+++|.+.|+...+. ....|+.+...+...|++++|+..|++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11000 11111 111111111 12346789999999887642 34568888889999999999999999988
Q ss_pred hcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 048281 329 SAGFQPD-LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK 407 (660)
Q Consensus 329 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 407 (660)
+. .|+ ...|..+...+...|+++.|...++.++...... ..++..+...|...|++++|...|++...
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED---------PDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 455 4477777788889999999999999998775433 77899999999999999999999998763
Q ss_pred ---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---
Q 048281 408 ---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI--- 481 (660)
Q Consensus 408 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 481 (660)
.+...|..+...+.+.|++++|+..|++.+... +.+...+..+...+...|++++|...|+...+. .-..+.
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~ 505 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYM 505 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccc
Confidence 356788889999999999999999999998752 335678888889999999999999999998762 211111
Q ss_pred ---HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 482 ---EHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 482 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
..++.....+...|++++|.+++++... +.+...+..++..+...|++++|+..|+++.++.+..
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 1122223334457999999999998533 3445678999999999999999999999999987654
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.8e-16 Score=170.53 Aligned_cols=327 Identities=11% Similarity=-0.045 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhhHHHHHHHH
Q 048281 235 RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--K-DIFSWNSIMTVH 311 (660)
Q Consensus 235 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 311 (660)
......++..+.+.|+++.|..++.........+ ...+..++.++...|++++|...|+++.+ | +...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667888899999999999999998886444 44455556777789999999999999875 3 556788899999
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHH
Q 048281 312 EQCGNHDGTLRLFDRMLSAGFQPD-LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYT 390 (660)
Q Consensus 312 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (660)
.+.|++++|...+++..+. .|+ ...+..+...+...|+++.|...+..+......+ ...+..+. .+.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~---------~~a~~~~~-~l~ 188 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR---------GDMIATCL-SFL 188 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC---------HHHHHHHH-HHH
Confidence 9999999999999999875 454 4567778888999999999999999887776554 33443343 478
Q ss_pred hcCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH---
Q 048281 391 KCGSMRDAQMVFTKMSKK----DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQ--- 463 (660)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~--- 463 (660)
..|++++|...++.+.+. +...+..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 899999999999987642 33345556778899999999999999999864 3356677778889999999985
Q ss_pred -HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048281 464 -GREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVF 540 (660)
Q Consensus 464 -a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (660)
|...++.+.+ ..+.+...+..+...+.+.|++++|...+++... +.+...+..+..++...|++++|+..+++++
T Consensus 268 ~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999986 3344668899999999999999999999998654 4456788889999999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 541 QLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 541 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+..|+++..+..++.++...|++++|...+++..+..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999987767778899999999999999999987654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=2.9e-15 Score=161.31 Aligned_cols=435 Identities=11% Similarity=0.002 Sum_probs=272.9
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCc--ccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChH
Q 048281 109 FYSNDFAFKGLDFFNHMRQLGVLPDK--YTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 109 ~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 186 (660)
..++|++..|+..|++..+. .|+. ..+ .++..+...|+.++|..++++.... -.........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 45667777777777777654 3332 233 6666666667777777777766511 0111222222344666667777
Q ss_pred HHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 048281 187 EALKVFEELPLR---DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVK 263 (660)
Q Consensus 187 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 263 (660)
+|.++|+++.+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777766532 4455556666667777777777777776553 34444443333333334444446666666666
Q ss_pred hCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHH
Q 048281 264 MGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEK-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTV 342 (660)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 342 (660)
.. +.+...+..+..++.+.|-...|.++..+-+.- +...+.-+ +.+.|. ++++.+..|+..
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a----~~vr~a~~~~~~----- 259 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAA----EQVRMAVLPTRS----- 259 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHH----HHHhhccccccc-----
Confidence 54 334555566666666666666666665553320 00000000 001111 111111111100
Q ss_pred HHHHhcccc---hHHHHHHHHHHHHh-CccCCCCCCCCcc-hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC----HhHH
Q 048281 343 LPACSHLAA---LMHGRQIHGYIVVN-GLAKNGSCKDIDD-VFMNNALMDMYTKCGSMRDAQMVFTKMSKKD----VASW 413 (660)
Q Consensus 343 l~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 413 (660)
...+ .+.+..-++.+... +..|. ..+. ..+.--.+-++.+.|++.++++.|+.+..+. ..+-
T Consensus 260 -----~~~r~~~~d~ala~~~~l~~~~~~~p~----~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 260 -----ETERFDIADKALADYQNLLTRWGKDPE----AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred -----chhhHHHHHHHHHHHHHHHhhccCCCc----cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 0111 23344444444332 11111 0000 1122233456778999999999999998432 2355
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CC
Q 048281 414 NIMILGYGMDGQGKEALDMFSCMCEAK-----LKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYG----------VV 478 (660)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~ 478 (660)
..+..+|...+++++|+.+|+++.... ..++......|.-++...+++++|..+++.+.+... -.
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 678899999999999999999997643 122333457788899999999999999999987211 01
Q ss_pred CCh---HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 479 PTI---EHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 479 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
|+. ..+..++..+...|++.+|++.++++.. +.|...+..+...+...|+...|++.++.+..++|++..+....
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 222 3455678888999999999999999754 67888999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 048281 554 SNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+.++...|+|.+|..+.+.+.+.
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999887654
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=5.5e-15 Score=162.65 Aligned_cols=412 Identities=10% Similarity=-0.046 Sum_probs=275.0
Q ss_pred CCCCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccC--CCCCCcccH
Q 048281 25 TFNHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNL--SCEPNVFTY 102 (660)
Q Consensus 25 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~ 102 (660)
....|.++.-..-.+......|+.++|..++....... +.+...+..+..++.+.|++++|..+|++. ..+.+...+
T Consensus 8 ~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 8 ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45667888888889999999999999999999887733 345567889999999999999999999952 334556678
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhc
Q 048281 103 NAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKC 182 (660)
Q Consensus 103 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 182 (660)
..+...+...|++++|+..+++..+... .+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 8888999999999999999999988632 2445 888888899999999999999999997543 455666778888889
Q ss_pred CChHHHHHHHccCCCCCch--------hHHHHHHHHHh-----CCCh---hHHHHHHHHHHHC-CCCCChh-hHH----H
Q 048281 183 QFMEEALKVFEELPLRDVV--------LWNAMVNGYAQ-----IGEF---HKALEVFRRMSKE-GIWMSRF-TVT----G 240 (660)
Q Consensus 183 g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~A~~~~~~m~~~-~~~p~~~-t~~----~ 240 (660)
|..+.|...++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. .
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999988775 211 12222222221 1233 6778888887753 2223221 111 1
Q ss_pred HHHHHHccCCchhHHHHHHHHHHhCCC-CCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHH
Q 048281 241 VLSALIMMGFFKNGRVVHGIVVKMGYD-SGVPVMNALIDMYGKGKCVGEALEIFEMMEEKD-------IFSWNSIMTVHE 312 (660)
Q Consensus 241 ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~li~~~~ 312 (660)
.+.++...|+.++|...|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+.+ ...+..+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133445557777777777777766522 221 22224566777777777777777664422 123444555666
Q ss_pred HcCChHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh
Q 048281 313 QCGNHDGTLRLFDRMLSAGFQPDLV-TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK 391 (660)
Q Consensus 313 ~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (660)
..|++++|..+++.+.+. .|... .+... ...|+ ......+..+...+..
T Consensus 322 ~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~-----------------------~~~p~-----~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 322 ESENYPGALTVTAHTINN--SPPFLRLYGSP-----------------------TSIPN-----DDWLQGQSLLSQVAKY 371 (765)
T ss_pred hcccHHHHHHHHHHHhhc--CCceEeecCCC-----------------------CCCCC-----chHHHHHHHHHHHHHH
Confidence 777777777777776654 22111 00000 00000 0002344556667777
Q ss_pred cCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 048281 392 CGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD-EVTFVGVLSACSHSGFLSQGREF 467 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 467 (660)
.|+.++|+++++++. ..+...+..+...+...|++++|++.+++.... .|+ ...+......+...|++++|..+
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 777777777777765 235667777777888888888888888877774 455 34445555567777888888888
Q ss_pred HHHhHHh
Q 048281 468 LPLMESR 474 (660)
Q Consensus 468 ~~~~~~~ 474 (660)
++.+++.
T Consensus 450 ~~~ll~~ 456 (765)
T PRK10049 450 TDDVVAR 456 (765)
T ss_pred HHHHHHh
Confidence 8888764
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.6e-14 Score=135.21 Aligned_cols=427 Identities=12% Similarity=0.080 Sum_probs=265.7
Q ss_pred CCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHc--CCChhHHHHH-H-c-----c-----
Q 048281 27 NHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSK--CCQMKYALFV-F-N-----N----- 92 (660)
Q Consensus 27 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g~~~~A~~~-~-~-----~----- 92 (660)
-.|.+..+=+.|++ ....|.++.+.-+++.|...|.+.+..+--.|+...+- ..++.-|+.- | . +
T Consensus 111 ~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 111 ADPLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred CCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 34556666677766 45678899999999999999998888888877765443 3333322211 1 1 0
Q ss_pred -----------CCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHH
Q 048281 93 -----------LSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVF 161 (660)
Q Consensus 93 -----------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 161 (660)
...+.+..+|.+||.++++--..+.|.++|++......+.+..+||.+|.+..-. ..+++..+|.
T Consensus 190 WK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMi 265 (625)
T KOG4422|consen 190 WKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMI 265 (625)
T ss_pred cccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHH
Confidence 1123455678888888888877888888888887777777888888887765433 3377778888
Q ss_pred HhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 048281 162 KLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGV 241 (660)
Q Consensus 162 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 241 (660)
.....||..|+|+++++..+.|+++.|.. .|++++.+|++-|+.|...+|..+
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~i 318 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLI 318 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHH
Confidence 88788888888888888888887777664 356777777788888888888877
Q ss_pred HHHHHccCCchh-HHHHHHHHHHh----CCCC----CchHHHHHHHHHHcCCCHHHHHHHHHhcCCC-----------Ch
Q 048281 242 LSALIMMGFFKN-GRVVHGIVVKM----GYDS----GVPVMNALIDMYGKGKCVGEALEIFEMMEEK-----------DI 301 (660)
Q Consensus 242 l~~~~~~~~~~~-a~~~~~~~~~~----g~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~~ 301 (660)
|..+.+.++..+ +..+...+... .++| |...+..-+..|.+..+.+-|.++-.-+... ..
T Consensus 319 ik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~ 398 (625)
T KOG4422|consen 319 IKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRN 398 (625)
T ss_pred HHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHH
Confidence 777777766644 23333333221 1222 3334455566666777777776665544321 12
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhH
Q 048281 302 FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFM 381 (660)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (660)
.-|..+....|+....+.-..+|+.|.-.-+-|+..+...++++..-.+.++-..+++..++..|.... ..+
T Consensus 399 fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r--------~~l 470 (625)
T KOG4422|consen 399 FYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR--------SDL 470 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh--------HHH
Confidence 346667788888888999999999999888889999999999999999999999999988888776554 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSKKDVA---SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
..-++..+++..- .|+.. -+.....-++ ..-.+.....-.+|.+..+.| ...+.++-.+.+.
T Consensus 471 ~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~ 535 (625)
T KOG4422|consen 471 REEILMLLARDKL------------HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRA 535 (625)
T ss_pred HHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHc
Confidence 3223333332210 11111 1111111000 001111122223344433333 3344444556667
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHH---HHHHHHhhcCCHHHHHHHHHhCC
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYT---CVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
|..++|.+++..+.++.+-.|.....+ -+++.-.+..+.-.|...++-|.
T Consensus 536 G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 536 GRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred chHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777777777655433334444444 33444455666666666666653
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1e-14 Score=157.15 Aligned_cols=440 Identities=11% Similarity=-0.002 Sum_probs=309.0
Q ss_pred HHhHcCCChhHHHHHHccCC-CCCCcc-cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc-HHHH--HHHHhhhCC
Q 048281 75 NMYSKCCQMKYALFVFNNLS-CEPNVF-TYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT-FPCL--IKCCCDVMA 149 (660)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~l--l~~~~~~~~ 149 (660)
-...+.|+++.|+..|++.. ..|+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 34568899999999999532 334432 23388899999999999999999987 343333 3333 456778899
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHh--CCChhHHHHHHHHHH
Q 048281 150 VLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQ--IGEFHKALEVFRRMS 227 (660)
Q Consensus 150 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~ 227 (660)
+++|.++++.+.+..+. +...+..++..|...++.++|+..++++...+......+..++.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999997643 466777888999999999999999999986544433334444444 566666999999999
Q ss_pred HCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHH
Q 048281 228 KEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSI 307 (660)
Q Consensus 228 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 307 (660)
+.. +-+...+.....++.+.|-...|.++... .|+..+-...... +.+.|.+..+.-..++..-
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~---- 260 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSE---- 260 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccccc----
Confidence 863 23455678888899999998888877554 2332221111110 1222222222211110000
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc-CCCCCH-HH----HHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhH
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSA-GFQPDL-VT----FSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFM 381 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (660)
-. +---.+.|+.-++.+... +-.|.. .. ..--+-++...++...+.+.++.+...+.+.. ..+
T Consensus 261 ~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P--------~y~ 329 (822)
T PRK14574 261 TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP--------DYA 329 (822)
T ss_pred hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC--------HHH
Confidence 00 000124455555555431 222322 11 22334567778888888888888888776544 778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSKK---------DVASWNIMILGYGMDGQGKEALDMFSCMCEAKL----------- 441 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------- 441 (660)
..++.++|...+++++|+.+|..+... +......|.-+|...+++++|..+++++.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 888899999999999999999887431 223346788899999999999999999987311
Q ss_pred CCCH--H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHH
Q 048281 442 KPDE--V-TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVW 516 (660)
Q Consensus 442 ~p~~--~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 516 (660)
.||+ . .+..++..+...|++.+|++.++++.. .-+-|......+.+.+...|.+.+|++.++.... +.+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 1222 2 234456678899999999999999976 5677889999999999999999999999987544 4456677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
...+.++...+++++|..+.+.+++..|+++.
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 78888999999999999999999999999874
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=4.1e-15 Score=139.87 Aligned_cols=272 Identities=13% Similarity=0.033 Sum_probs=205.6
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCChhhHHH----HHH-HHHH-cCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccc
Q 048281 278 DMYGKGKCVGEALEIFEMMEEKDIFSWNS----IMT-VHEQ-CGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----li~-~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (660)
.-|.+.|+++.|+++++-..++|..+-.+ |-. -|.+ -.++..|.++-+...... +-+......--......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 45778899999999888887665433222 211 2222 235666666655544321 1122111111122335689
Q ss_pred hHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHH
Q 048281 352 LMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKE 428 (660)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 428 (660)
+++|.+.+.+.+...... ......+.-.+-+.|++++|++.|-++. ..++...-.+...|-...+..+
T Consensus 506 ~dka~~~ykeal~ndasc---------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASC---------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred HHHHHHHHHHHHcCchHH---------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence 999999999988776555 3344445667788999999999998765 4577777788889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 429 ALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 429 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
|++++.+.... ++.|+..+.-|...|-+.|+-.+|.+.+-+--+ -++.+..+...|..-|....-+++|+.+|++..
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999887764 566778888899999999999999998877655 566788999999999999999999999999864
Q ss_pred C-CCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 509 N-EANPVVWRTLLAAS-RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 509 ~-~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
. +|+.+-|..++..| ++.|++.+|..+|+......|.+...+..|.+++...|.
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 4 89999999988755 678999999999999999999999999999999988874
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=5.9e-14 Score=131.45 Aligned_cols=346 Identities=13% Similarity=0.064 Sum_probs=255.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhC--CHHHH-HHHHHHHHHhCCCCChhHHHH
Q 048281 98 NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVM--AVLEV-KKIHGLVFKLGLDLDVYIGSA 174 (660)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a-~~~~~~~~~~g~~~~~~~~~~ 174 (660)
.+.+=|.|+.. ..+|....+.-+|+.|.+.|+..+...--.|++..+-.+ ++--+ .+.|-.|.+.|-+. ..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--
Confidence 34456666664 566788999999999999998777766556655533222 22211 22333444444322 2222
Q ss_pred HHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhH
Q 048281 175 LVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNG 254 (660)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 254 (660)
+.|.+.+ ++-+...+...+|.+||.++++--..+.|.+++++-.....+.+..+||.+|.+.+-. ..
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 4455544 4445555677899999999999999999999999999998999999999999876543 33
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 048281 255 RVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQP 334 (660)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 334 (660)
+++..+|....+.||..|+|+++++..+.|+++.|.+. |++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCc
Confidence 88999999999999999999999999999998877754 577889999999999
Q ss_pred CHHHHHHHHHHHhcccchHHH-HHHHHHHHHh----CccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 048281 335 DLVTFSTVLPACSHLAALMHG-RQIHGYIVVN----GLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-- 407 (660)
Q Consensus 335 ~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 407 (660)
...+|..+|..+++.++..+. ..+...+... .+.+. .+.|...+...+..+.+..+.+-|.++-.-...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~----~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI----TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC----CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 999999999999998887553 3333333222 22221 223466777788888899999999887665441
Q ss_pred ------C---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048281 408 ------K---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVV 478 (660)
Q Consensus 408 ------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 478 (660)
+ ...-|..+....|+....+.-+.+|+.|+-.-+-|+..+...++++....|.++-.-+++..++. +|..
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght 465 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHT 465 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhh
Confidence 1 22356677788888899999999999999888899999999999999999999999999999887 5655
Q ss_pred CChHHHHHHHHHHh
Q 048281 479 PTIEHYTCVIDMLG 492 (660)
Q Consensus 479 ~~~~~~~~l~~~~~ 492 (660)
.+.....-+...++
T Consensus 466 ~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 466 FRSDLREEILMLLA 479 (625)
T ss_pred hhHHHHHHHHHHHh
Confidence 44444433333333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=4e-12 Score=130.57 Aligned_cols=534 Identities=11% Similarity=0.061 Sum_probs=361.4
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHcc--CCCCCCcccHHHHHHHHHcCCChhH
Q 048281 40 QLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNN--LSCEPNVFTYNAMISGFYSNDFAFK 117 (660)
Q Consensus 40 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~ 117 (660)
......|+++.|.+++..+++.. +.+...|-.|...|-..|+.+++...+-- ...+.|...|-.+-.-..+.|++.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33445599999999999999986 45778999999999999999999988751 3455566889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHH----HHHHhHhcCChHHHHHHHc
Q 048281 118 GLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSA----LVNTYLKCQFMEEALKVFE 193 (660)
Q Consensus 118 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 193 (660)
|.-+|.+.++... ++...+---...|-+.|+...|..-+.++.....+.|..-... .++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999998742 3444445556778899999999999999998765434333333 3455667777799998888
Q ss_pred cCCC-----CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----------------------hhHH----HHH
Q 048281 194 ELPL-----RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSR----------------------FTVT----GVL 242 (660)
Q Consensus 194 ~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------------~t~~----~ll 242 (660)
.... -+...++.++..|.+...++.|......+......+|. ..|. -++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7654 25567899999999999999999999988762222221 1111 223
Q ss_pred HHHHccCCchhHHHHHHHHHHhCC--CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCC
Q 048281 243 SALIMMGFFKNGRVVHGIVVKMGY--DSGVPVMNALIDMYGKGKCVGEALEIFEMMEE----KDIFSWNSIMTVHEQCGN 316 (660)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~ 316 (660)
-++.+....+....+.....+..+ .-++..|.-+..+|...|.+..|+.+|..+.. .+...|-.+...|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344455666666667777777663 44566889999999999999999999999875 366789999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCH
Q 048281 317 HDGTLRLFDRMLSAGFQPDL-VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSM 395 (660)
Q Consensus 317 ~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 395 (660)
+++|.+.|+..+.. .|+. ..-.++-..+-+.|+.++|.+.+..+..-+...-..+...++..+.-...+.|.+.|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999875 5554 34445556678899999999998887632222123333344466666667777777776
Q ss_pred HHHHHHHhcCC----------------------------------------CC-------------------------CH
Q 048281 396 RDAQMVFTKMS----------------------------------------KK-------------------------DV 410 (660)
Q Consensus 396 ~~A~~~~~~~~----------------------------------------~~-------------------------~~ 410 (660)
++=..+-..|. .+ ++
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 65332211110 00 00
Q ss_pred h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCH-H-HH-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh
Q 048281 411 A----SWNIMILGYGMDGQGKEALDMFSCMCEAKL--KPDE-V-TF-VGVLSACSHSGFLSQGREFLPLMESRYGVVPTI 481 (660)
Q Consensus 411 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~-~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 481 (660)
. .+.-++.++++.+++++|+.+...+....+ .++. . .+ ...+.++...+++..|...++.+...++...++
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 1 134466788899999999999988886532 2222 1 22 334556778899999999999988753333322
Q ss_pred ---HHHHHHHHHHhhc-----------------------------------CCHHHHHHHHHhCCC-CCCHHHHHHHH-H
Q 048281 482 ---EHYTCVIDMLGRA-----------------------------------GQLNEAYELALAMPN-EANPVVWRTLL-A 521 (660)
Q Consensus 482 ---~~~~~l~~~~~~~-----------------------------------g~~~~A~~~~~~~~~-~~~~~~~~~l~-~ 521 (660)
..|+...+...+. +.+..|+..+-+.-. .|+.+..+.++ .
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgl 782 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGL 782 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 3344333322222 334444443322211 23322222111 1
Q ss_pred HHH----------HcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 522 ASR----------LHGNTDLAEIAAQRVFQLEPG--HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 522 ~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
++. ++-..-.++..+.+..++... .-+++.+++++|-..|-..-|..+++++.+-.
T Consensus 783 afih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 783 AFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 111 111233445555555444222 34678889999999999999999999987743
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=5.2e-12 Score=124.73 Aligned_cols=369 Identities=9% Similarity=0.008 Sum_probs=289.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 048281 201 VLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMY 280 (660)
Q Consensus 201 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 280 (660)
.+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..+.-..+++.+...- +-....|.....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 35666666677777777777777777653 22233445555555556677777777777776653 23344566667777
Q ss_pred HcCCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHH
Q 048281 281 GKGKCVGEALEIFEMMEE--K-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQ 357 (660)
Q Consensus 281 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 357 (660)
-..|++..|+.++.+.-+ | +...|-+-+..-..+.+++.|..+|.+.... .|+...|..-+..---.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 788999999998887765 2 4567888888888999999999999988764 5666666655555556788899999
Q ss_pred HHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHH
Q 048281 358 IHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK--K-DVASWNIMILGYGMDGQGKEALDMFS 434 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 434 (660)
+++..++.-... ...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+..+|..+|+
T Consensus 673 llEe~lk~fp~f---------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 673 LLEEALKSFPDF---------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred HHHHHHHhCCch---------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 999888876655 67899999999999999999999987653 3 56688888888888889999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH
Q 048281 435 CMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPV 514 (660)
Q Consensus 435 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 514 (660)
+..-.+ +-|...|...|..-.+.|+.+.|..++.++.+ ..+.+...|..-|.+..+-++-..+.+.+++.. .|+.
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dph 818 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPH 818 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCch
Confidence 988764 45677888999999999999999999999988 577777888888988888888777777777765 4677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEE
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIEL 589 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
+..++...+....++++|..-|.++++.+|++..+|..+-..+.+.|.-++-.+++.+.... .|..|..|..+
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 77788888889999999999999999999999999999999999999999999999887663 44556556543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=9.6e-11 Score=115.98 Aligned_cols=463 Identities=11% Similarity=0.051 Sum_probs=364.2
Q ss_pred HHHHhHcCCChhHHHHHHcc--CCCCCCcccHHHHHHHHHcCCChhHHHHHHHH----HHHCCCCCCcccHHHHHHHHhh
Q 048281 73 LINMYSKCCQMKYALFVFNN--LSCEPNVFTYNAMISGFYSNDFAFKGLDFFNH----MRQLGVLPDKYTFPCLIKCCCD 146 (660)
Q Consensus 73 ll~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~ 146 (660)
|.-+|++...++.|..++++ ...+.+...|-+--..=-.+|+.+...++..+ +...|+..|...|-.=...|-+
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34456666777888888874 23445666676655555667887777776655 4557888898899888889999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHhHhcCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHH
Q 048281 147 VMAVLEVKKIHGLVFKLGLDLD--VYIGSALVNTYLKCQFMEEALKVFEELPL---RDVVLWNAMVNGYAQIGEFHKALE 221 (660)
Q Consensus 147 ~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 221 (660)
.|..-.+..+....+..|++-. ..+|..-...|.+.+.++-|..+|....+ .+...|......--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999988887543 46888888899999999999999887664 366778887777777899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--C
Q 048281 222 VFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--K 299 (660)
Q Consensus 222 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~ 299 (660)
+|++.... ++-....+....+..-..|+...|..++..+.+... .+..+|-.-+..-....+++.|..+|.+... +
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 99999875 333444455555566677999999999999988763 3677898999999999999999999998765 5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcc
Q 048281 300 DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLV-TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDD 378 (660)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 378 (660)
+...|.--+..---.++.++|++++++..+. -|+-. .|..+-+.+.+.++.+.|...|..-.+.-+..
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--------- 718 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--------- 718 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC---------
Confidence 6667776666666779999999999998875 56654 56666677888888888888876544443322
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
+..|-.|...--+.|.+-.|..+|++.. ..+...|-..|+.-.+.|+.+.|..++.+.++. ++.+...|..-|...
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE 797 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence 7789999999999999999999999876 347789999999999999999999999998876 455667788777777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~ 533 (660)
.+.++-......++. ...|..+.-++..++....++++|.+.|.+... .|| -.+|.-+...+..+|.-+.-.
T Consensus 798 ~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred cCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 777665554444443 445777888999999999999999999998654 344 468888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHH
Q 048281 534 IAAQRVFQLEPGHCGNYVLMSN 555 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~~~l~~ 555 (660)
+++.+...-+|.+...|.....
T Consensus 872 ev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhccCCCCCcHHHHHhh
Confidence 9999999999998777766554
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.1e-10 Score=120.11 Aligned_cols=349 Identities=11% Similarity=0.006 Sum_probs=250.1
Q ss_pred HcCCChhHHHHHHccCC--CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHH
Q 048281 78 SKCCQMKYALFVFNNLS--CEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKK 155 (660)
Q Consensus 78 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 155 (660)
.-.|++++|.+++.+.+ .+.+...|.+|...|-+.|+.+++...+-..-..... |...|..+.......|.+++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 33499999999999633 4567788999999999999999999887665544322 66789999999999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCc----hhH----HHHHHHHHhCCChhHHHHHHHHHH
Q 048281 156 IHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDV----VLW----NAMVNGYAQIGEFHKALEVFRRMS 227 (660)
Q Consensus 156 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~~~~~~A~~~~~~m~ 227 (660)
.|.+.++..+ ++....-.-...|-+.|+...|...|.++.+.+. .-. -..++.+...++-+.|++.+....
T Consensus 229 cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999853 4555555667888999999999998888765332 222 234566777777799999888876
Q ss_pred HC-CCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHh---------------------------CCCCCchH-HHHHHH
Q 048281 228 KE-GIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKM---------------------------GYDSGVPV-MNALID 278 (660)
Q Consensus 228 ~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~li~ 278 (660)
.. +-..+...++.+...+.....++.+.......... ++.++..+ ...+.-
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 62 23345556777777777777777776665555441 22333334 222212
Q ss_pred HHHcCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHH
Q 048281 279 MYGKGKCVGEALEIFEMMEE----KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMH 354 (660)
Q Consensus 279 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (660)
.-.+.+...+++..|-.... .++..|.-+..+|.+.|++.+|+.+|..+...-.--+...|..+...+...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 22233344444443333222 24456888999999999999999999999987555567788889999999999999
Q ss_pred HHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH------------hHHHHHHHHHHh
Q 048281 355 GRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDV------------ASWNIMILGYGM 422 (660)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~ 422 (660)
|.+.++.++...+.. ..+.-.|...|.+.|+.++|.+++..+..||. ...-.....+.+
T Consensus 468 A~e~y~kvl~~~p~~---------~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDN---------LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHHHHHHhcCCCc---------hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999887655 56677888999999999999999999875541 111223344566
Q ss_pred cCChHHHHHHHHHHH
Q 048281 423 DGQGKEALDMFSCMC 437 (660)
Q Consensus 423 ~g~~~~A~~~~~~m~ 437 (660)
.|+.++=+.+-..|+
T Consensus 539 ~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 539 VGKREEFINTASTLV 553 (895)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666665444444443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=4.2e-15 Score=144.16 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=112.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHH-HHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVL-PACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM 386 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 386 (660)
...+.+.|++++|++++++......+|+...|..++ ..+...++.+.|...++.+...+... +..+..++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---------~~~~~~l~ 85 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---------PQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------cccccccc
Confidence 334445555555555554333222123333333322 23334555666666666655544332 44555566
Q ss_pred HHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHH
Q 048281 387 DMYTKCGSMRDAQMVFTKMS--KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAK-LKPDEVTFVGVLSACSHSGFLSQ 463 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 463 (660)
.. ...+++++|.+++.... .++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 65 57788888888777653 3456677778888899999999999999987543 34566777788888999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 464 GREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
|.+.++++.+. .+.+......++..+...|+.+++.++++.... +.++..|..+..+|...|+.++|...++++.+
T Consensus 165 A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 165 ALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999873 334577888999999999999997777766533 45677899999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 542 LEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 542 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..|+|+.....++.++...|+.++|.++++++.+
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999887643
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=6.6e-12 Score=120.01 Aligned_cols=412 Identities=14% Similarity=0.078 Sum_probs=246.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCC-hhHHHHHHHHhHh
Q 048281 104 AMISGFYSNDFAFKGLDFFNHMRQLGVLPD-KYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLD-VYIGSALVNTYLK 181 (660)
Q Consensus 104 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 181 (660)
....-|.++|++++|++.|.+.++. .|| +..|.....+|...|+++++.+--...++. .|+ +-.+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888999999999998874 677 677888888888889998888877766663 444 3355555667777
Q ss_pred cCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHH--------HH-C--CCCCChhhHHHHHHHHHccCC
Q 048281 182 CQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRM--------SK-E--GIWMSRFTVTGVLSALIMMGF 250 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m--------~~-~--~~~p~~~t~~~ll~~~~~~~~ 250 (660)
.|++++|+.= ++-.++..++....-..-+.+++++. .+ . .+-|+.....+....+...-
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~- 265 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP- 265 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc-
Confidence 7888777632 23334444444433333333443332 11 1 12233333333222221100
Q ss_pred chhHHHHHHHHHHhCCCCCchHHHHHHHH----HHcC-CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 048281 251 FKNGRVVHGIVVKMGYDSGVPVMNALIDM----YGKG-KCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFD 325 (660)
Q Consensus 251 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~-~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 325 (660)
......+.......+..+ +... ..+.+|...+.+-.. ....... .+..+.-+ +
T Consensus 266 -----------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~~~--~n~~d~~l---e 323 (606)
T KOG0547|consen 266 -----------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESSLS--VNEIDAEL---E 323 (606)
T ss_pred -----------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhhcc--ccccchhH---H
Confidence 000000000001111110 0000 011122111111000 0000000 00000000 0
Q ss_pred HHhhcCCCCCHHHHHHHHHH--HhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048281 326 RMLSAGFQPDLVTFSTVLPA--CSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFT 403 (660)
Q Consensus 326 ~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 403 (660)
.| .-..++.+ +.-.|+.-.+..-++.++.....+ ...|--+..+|....+.++-+..|+
T Consensus 324 ~~----------A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~---------~~lyI~~a~~y~d~~~~~~~~~~F~ 384 (606)
T KOG0547|consen 324 YM----------AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF---------NSLYIKRAAAYADENQSEKMWKDFN 384 (606)
T ss_pred HH----------HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc---------chHHHHHHHHHhhhhccHHHHHHHH
Confidence 00 00111111 223466667777777777666555 3346666677788888888888887
Q ss_pred cCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 048281 404 KMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVP 479 (660)
Q Consensus 404 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 479 (660)
... ..|..+|..-...+.-.+++++|..=|++.+.. .| +...|..+-.+..+.+.++++...|++.++ .++.
T Consensus 385 ~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~ 460 (606)
T KOG0547|consen 385 KAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPN 460 (606)
T ss_pred HHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCC
Confidence 665 335566766666667778899999999998874 45 345666666677788899999999999988 5777
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN---------PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
.+.+|+.....+.-++++++|.+.|+.... +|. +.+-.+++ ...-.+++..|+.+++++++++|....+
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHH
Confidence 778899999999999999999999987543 333 12222222 2334589999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 550 YVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 550 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
|..|+.+-..+|+.++|+++|++...
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999997643
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=2.2e-11 Score=115.10 Aligned_cols=451 Identities=11% Similarity=0.073 Sum_probs=285.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHhhhCCHHHHHHHHHHHHHhCCCCChh----HHHHHHHHh
Q 048281 105 MISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPC-LIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY----IGSALVNTY 179 (660)
Q Consensus 105 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~ 179 (660)
|.+-|..+....+|+..|+-+.+....||...... +-..+.+.+.+..|.++++..+..-+..+.. +.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33455556677889999999888888888765432 3355678889999999999888774443333 445555667
Q ss_pred HhcCChHHHHHHHccCCC--CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH--------HHHHHHHHccC
Q 048281 180 LKCQFMEEALKVFEELPL--RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTV--------TGVLSALIMMG 249 (660)
Q Consensus 180 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~--------~~ll~~~~~~~ 249 (660)
.+.|.++.|...|+...+ ||..+--.|+-.+..-|+.++..+.|.+|+.-...||..-| ..++.-..+..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999988763 55554333444555568889999999999875444444322 11221111111
Q ss_pred CchhHHHHHHHHHHhCCCCCc----hHHHHHHHHHHcCC---CHHHHHHHHHhcCCCCh--hhHHHHHHHHHHcCChHHH
Q 048281 250 FFKNGRVVHGIVVKMGYDSGV----PVMNALIDMYGKGK---CVGEALEIFEMMEEKDI--FSWNSIMTVHEQCGNHDGT 320 (660)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a 320 (660)
.+..|.+.. +.+. .+...+|.-...-. -.+-+.+.++.-..... ..--.-..-+.++|+++.|
T Consensus 367 -------~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 367 -------HLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred -------HHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 111121111 0000 01011110000000 00111111111000000 0000113457889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHH--HHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHH
Q 048281 321 LRLFDRMLSAGFQPDLVTFS--TVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDA 398 (660)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 398 (660)
+++++-+.+..-+.-...-+ ..+.-+-.-.++..|.++-+..+...--. +...+.-.+.-...|++++|
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn---------~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN---------AAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC---------HHHhhcCCceeeecCcHHHH
Confidence 99999887653222222222 22222222346666766666554332211 23333333444567999999
Q ss_pred HHHHhcCCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048281 399 QMVFTKMSKKDVASWNIM---ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRY 475 (660)
Q Consensus 399 ~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 475 (660)
.+.|.+....|...-.+| .-.+-..|+.++|+..|-++..- +..+...+..+...|....+..+|++++-+...
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-- 586 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-- 586 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--
Confidence 999999887776544443 33567889999999999887653 344666777788889999999999999998865
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 476 GVVPTIEHYTCVIDMLGRAGQLNEAYELALA-MPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
-++.|+.+...|.+.|-+.|+-.+|.+..-. ..- +-+..+..-|...|....-+++|+..|+++--++|+....-..+
T Consensus 587 lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 587 LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 6777889999999999999999999887543 222 45666777777778877888999999999988899765444566
Q ss_pred HHHHHhCCChHHHHHHHHHHHh
Q 048281 554 SNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+.++.+.|++..|..+++..-+
T Consensus 667 asc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6778889999999999998854
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=1e-10 Score=119.75 Aligned_cols=521 Identities=10% Similarity=0.007 Sum_probs=293.8
Q ss_pred CCCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHH
Q 048281 26 FNHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAM 105 (660)
Q Consensus 26 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 105 (660)
.++-|..-||.+++..|+..|+.+.|- +|..|.-...+.+..+++.++....+.|+.+.+. .|...+|..|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep~aDtyt~L 89 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EPLADTYTNL 89 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CCchhHHHHH
Confidence 455666677777777777777777766 7777777666667777777777777766665333 5777889999
Q ss_pred HHHHHcCCChhHHHHHHHH-HHH-------CCCCCCcccHHH--------------HHHHHhhhCCHHHHHHHHHHHHHh
Q 048281 106 ISGFYSNDFAFKGLDFFNH-MRQ-------LGVLPDKYTFPC--------------LIKCCCDVMAVLEVKKIHGLVFKL 163 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~-m~~-------~~~~p~~~t~~~--------------ll~~~~~~~~~~~a~~~~~~~~~~ 163 (660)
+.+|.+.|+... ++..++ |.. .|+.--..-|-. ++......|-++.+.+++..+...
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999988754 222222 221 122111111111 111112223333333333222111
Q ss_pred CCCCChhHHHHHHHHhHh-cCChHHHHHHHccCCC-CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 048281 164 GLDLDVYIGSALVNTYLK-CQFMEEALKVFEELPL-RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGV 241 (660)
Q Consensus 164 g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l 241 (660)
...- .... .+.-+.. ...+++-....+.... ++..+|.+++..-...|+.+.|..++.+|++.|++.+.+-|-.+
T Consensus 169 a~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 169 AWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred cccc-hHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1000 0000 1222211 2234444444444443 78899999999999999999999999999999999998877777
Q ss_pred HHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC-----
Q 048281 242 LSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGN----- 316 (660)
Q Consensus 242 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~----- 316 (660)
+-+ .++...+..+..-|...|+.|+..|+.-.+-.+...|....+....+.-.--....+..+.++.....+
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl 322 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNL 322 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHH
Confidence 766 788888999999999999999999998877777765542222111100000011223333333111111
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHH
Q 048281 317 HDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMR 396 (660)
Q Consensus 317 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 396 (660)
..-....+++..-.|+......|...++. ...|.-+...++-..+..-....++ .++..+..++.-
T Consensus 323 ~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~-----~~V~a~~~~lrq-------- 388 (1088)
T KOG4318|consen 323 RKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSG-----QNVDAFGALLRQ-------- 388 (1088)
T ss_pred HHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCc-----chHHHHHHHHHH--------
Confidence 11222333333334444444444433332 2255556666665555332222210 013334443333
Q ss_pred HHHHHHhcCCCCCHh-HHHHHHHHHHh---cC------------ChHHHHHHHHHHHHc----CCC-------CCHHHHH
Q 048281 397 DAQMVFTKMSKKDVA-SWNIMILGYGM---DG------------QGKEALDMFSCMCEA----KLK-------PDEVTFV 449 (660)
Q Consensus 397 ~A~~~~~~~~~~~~~-~~~~li~~~~~---~g------------~~~~A~~~~~~m~~~----g~~-------p~~~~~~ 449 (660)
.|.+...+... .++ ...+... .. +...+++-+...... ... |-...-+
T Consensus 389 ----yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 389 ----YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred ----HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 34333332211 111 1111111 11 111122211111110 011 1122345
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHH
Q 048281 450 GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE-----ANPVVWRTLLAASR 524 (660)
Q Consensus 450 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~ 524 (660)
.++..|++.-+..++...-+..... -+. ..|..|++.+....+.+.|..+.++...+ -|...+..+.....
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 5666777766667776555544431 222 67899999999999999999999988642 34455677888888
Q ss_pred HcCChHHHHHHHHHHHhc---CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEE
Q 048281 525 LHGNTDLAEIAAQRVFQL---EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSW 586 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 586 (660)
+.+....+..+++++.+. .|....+...+.+..+..|.-+...++++-+...|+.- .|.-|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 889999999998888774 33334556677777788999999999999998888866 34433
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.9e-11 Score=115.02 Aligned_cols=194 Identities=10% Similarity=0.052 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
+.+...+.+-|.-.++.++|...|++..+ .....|+.|..-|...++...|++-++.+++-. +.|-..|-.|.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 44566667777777777888888877653 344678888888888888888888888887743 44667788888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE--ANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
.-.+.+.-|+-+|+++.+ --+.|...|.+|.++|.+.++.++|.+-|.+...- .+...+..|...|.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 888888888888888765 34446678888888888888888888888776542 33467778888888888888888
Q ss_pred HHHHHHHhc-------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 534 IAAQRVFQL-------EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 534 ~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+.|++.++. .|....+...|+.-+.+.+++++|..+......
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 888877762 232333445577777788888888777666544
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=9e-10 Score=105.20 Aligned_cols=492 Identities=11% Similarity=0.043 Sum_probs=335.8
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHccC--CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc-cHHHHH
Q 048281 65 DSPLSITSLINMYSKCCQMKYALFVFNNL--SCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKY-TFPCLI 141 (660)
Q Consensus 65 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll 141 (660)
.+...|....+.=-.++++..|+.+|++. ....+...|-..+..=.++.....|..++++.... -|-+. .|---+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 35566666666667778888888888852 34567777877888888888888888888887764 33222 233333
Q ss_pred HHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC--CCCchhHHHHHHHHHhCCChhHH
Q 048281 142 KCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP--LRDVVLWNAMVNGYAQIGEFHKA 219 (660)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A 219 (660)
..=-..|++..|.++|+...+ ..|+...|.+.|+.=.+....+.|..++++.. .|++.+|--..+-=.++|+...|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 334456888888888888776 57888888888888888888888988888764 67888888888888888888888
Q ss_pred HHHHHHHHHCCCCCChh----hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCC-chHHHHHHHHHHcCCCHH---HHHH
Q 048281 220 LEVFRRMSKEGIWMSRF----TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSG-VPVMNALIDMYGKGKCVG---EALE 291 (660)
Q Consensus 220 ~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~---~A~~ 291 (660)
.++|....+. -.|.. .+.+....=.+...++.|.-++...++.-.... ...|..+...=-+.|+.. +++-
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 8888887653 12222 333333333455678888888888877642221 334555544444455543 3332
Q ss_pred H-----HHhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH-------HHHHHHHHHH---hcccchH
Q 048281 292 I-----FEMMEEK---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL-------VTFSTVLPAC---SHLAALM 353 (660)
Q Consensus 292 ~-----~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~ 353 (660)
- ++.+... |-.+|--.++.--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2 2333333 4456666777777789999999999998865 55532 1222222222 3467889
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCcchhHHHHH----HHHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChH
Q 048281 354 HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNAL----MDMYTKCGSMRDAQMVFTKMS--KKDVASWNIMILGYGMDGQGK 427 (660)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 427 (660)
.+.++++..++. ++.. ..++.-+ ...-.++.++..|.+++.... .|..-++...|..-.+.++++
T Consensus 384 rtr~vyq~~l~l-IPHk--------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHK--------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHHHHHHHHHhh-cCcc--------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHH
Confidence 999999988883 2232 3444433 444457889999999998766 567778888888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 048281 428 EALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAM 507 (660)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 507 (660)
.+..++++.++-+ +-|..+|......-...|+.+.|..+|.-++...........|.+.|+.=...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999964 446678888877778889999999999999875444455577888888888999999999999997
Q ss_pred CC-CCCHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhc--CCCCcchHHHHHH----HHHhCCChH
Q 048281 508 PN-EANPVVWRTLLAASR-----LHG-----------NTDLAEIAAQRVFQL--EPGHCGNYVLMSN----IYVAGGKYE 564 (660)
Q Consensus 508 ~~-~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~--~p~~~~~~~~l~~----~~~~~g~~~ 564 (660)
.. .+...+|.++...-. +.+ +...|..+|+++... +.+..+--..|.. .-...|...
T Consensus 534 L~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~ 613 (677)
T KOG1915|consen 534 LDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEG 613 (677)
T ss_pred HHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchh
Confidence 65 456668887765433 233 456788888887663 1111222222222 223345555
Q ss_pred HHHHHHHHH
Q 048281 565 EVLDIRHTM 573 (660)
Q Consensus 565 ~a~~~~~~~ 573 (660)
+...+-.+|
T Consensus 614 d~~~V~s~m 622 (677)
T KOG1915|consen 614 DVERVQSKM 622 (677)
T ss_pred hHHHHHHhc
Confidence 555555554
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.5e-12 Score=129.64 Aligned_cols=162 Identities=12% Similarity=0.088 Sum_probs=93.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-IEHYTC 486 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 486 (660)
.+.+|-++.++|.-+++++.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+.++. +.|. -..|..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHh
Confidence 4556666666666666666666666666652 34 445555555555555566666666665532 2221 122333
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 048281 487 VIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYE 564 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 564 (660)
|.-.|.+.++++.|+-.|+++.. +.+.++...++..+.+.|+.|+|++++++++.++|.++-.-...+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 44556666666666666666543 3344555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHh
Q 048281 565 EVLDIRHTMRQ 575 (660)
Q Consensus 565 ~a~~~~~~~~~ 575 (660)
+|.+.++++++
T Consensus 575 eal~~LEeLk~ 585 (638)
T KOG1126|consen 575 EALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-10 Score=110.10 Aligned_cols=258 Identities=12% Similarity=0.057 Sum_probs=203.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH
Q 048281 307 IMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM 386 (660)
Q Consensus 307 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 386 (660)
+..++....+.+++++-.......|+.-+...-+....+.-...|+++|+.+|+.+.++.+-. ..|..+|+.++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------l~dmdlySN~L 306 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------LDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------chhHHHHhHHH
Confidence 344555666788888888888888876666655555556677889999999999999885432 12367777765
Q ss_pred HHHHhcCCHH-HHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHH
Q 048281 387 DMYTKCGSMR-DAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD-EVTFVGVLSACSHSGFLSQG 464 (660)
Q Consensus 387 ~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a 464 (660)
-.--.+.++. -|..+++ +.+-.+.|...+.+-|.-.++.++|...|++.++. .|. ...|+.+..-|....+...|
T Consensus 307 Yv~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHHhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHH
Confidence 4433322222 2333332 22334566777788888899999999999999985 444 35677777789999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 465 REFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
++-++.+++ -.+.|-..|-.|.++|.-.+...-|+-.|++... +.|+..|.+|+.+|.+.++.++|++.|.+++..
T Consensus 384 i~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999986 4556779999999999999999999999999765 678899999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 543 EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 543 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
...+...+..|+++|-+.++.++|.+.+.+..+
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666778999999999999999999999998765
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=6e-11 Score=120.51 Aligned_cols=285 Identities=12% Similarity=-0.048 Sum_probs=164.4
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHH--HHHHHHHHcCCCHHHHH
Q 048281 213 IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVM--NALIDMYGKGKCVGEAL 290 (660)
Q Consensus 213 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~~~~~~A~ 290 (660)
.|+++.|.+.+....+..-.| ...|.....+..+.|+.+.+...+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555443321111 112222233335556666666666555543 2333222 23355667777777777
Q ss_pred HHHHhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCc
Q 048281 291 EIFEMMEEK---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGL 367 (660)
Q Consensus 291 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 367 (660)
..++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 777776542 4556677777777778888888888877776544222 111110
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048281 368 AKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD 444 (660)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 444 (660)
...|..++.......+.+...++++.+. ..++.....+...+...|+.++|..++++..+. .||
T Consensus 229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~ 295 (398)
T PRK10747 229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYD 295 (398)
T ss_pred -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 0112222222223334455555555554 235666777777777888888888888777763 444
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAAS 523 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~ 523 (660)
.... ++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|+.... .|+...+..+..++
T Consensus 296 ~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 296 ERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred HHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4221 23333445777777777777765 3444555666777777777777777777776544 46666666777777
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 048281 524 RLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~ 542 (660)
.+.|+.++|.+++++.+.+
T Consensus 372 ~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 372 DRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHcCCHHHHHHHHHHHHhh
Confidence 7777777777777776654
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-10 Score=114.16 Aligned_cols=491 Identities=11% Similarity=-0.007 Sum_probs=289.0
Q ss_pred CCCCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHcc-CCCCCCcccHH
Q 048281 25 TFNHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNN-LSCEPNVFTYN 103 (660)
Q Consensus 25 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~ 103 (660)
+...-.+.+-+..+++-+....+++.|.-+-+++...+..|+ .---+.+++.-.|+++.|..+... .+...|..+..
T Consensus 9 ~~~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cry 86 (611)
T KOG1173|consen 9 TLADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRY 86 (611)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 455566778888899988888888888888888877664443 444466778888888888888763 35667888888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 048281 104 AMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQ 183 (660)
Q Consensus 104 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 183 (660)
.....+.+...+++|..++..-.. .-+...|-.-=. +..-..+.+. ++. ++......+-.-...|....
T Consensus 87 L~~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~ 155 (611)
T KOG1173|consen 87 LAAKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALD 155 (611)
T ss_pred HHHHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhc
Confidence 888888888899999888873311 001111100000 0000001110 000 00000111111123344445
Q ss_pred ChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCC----CCChhhHHHHHHHHH-ccCCchhHHHHH
Q 048281 184 FMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGI----WMSRFTVTGVLSALI-MMGFFKNGRVVH 258 (660)
Q Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~t~~~ll~~~~-~~~~~~~a~~~~ 258 (660)
..++|...|.+....|+..+.++...-.. ..-.+.+.+..+..... ..+......+..... +..+.+ ....-
T Consensus 156 n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~ 232 (611)
T KOG1173|consen 156 NREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRN 232 (611)
T ss_pred cHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccC
Confidence 56666666655554444444433221111 11112122222211100 001111111111000 000000 00000
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHH
Q 048281 259 GIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVT 338 (660)
Q Consensus 259 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 338 (660)
....-.+... ++.....-..-+-..+++.+..++.+...+.. ++....
T Consensus 233 ~~~sl~~l~~-------------------------------~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~ 280 (611)
T KOG1173|consen 233 EDESLIGLAE-------------------------------NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPC 280 (611)
T ss_pred chhhhhhhhh-------------------------------cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcch
Confidence 0000001112 22223333344445556666666666655431 223333
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHH
Q 048281 339 FSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK---DVASWNI 415 (660)
Q Consensus 339 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 415 (660)
+..=|..+...|+-..-..+-..+++.-+.. +.+|-++..-|.-.|+..+|++.|.+...- -...|-.
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~---------a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~ 351 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLYPSK---------ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLA 351 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCCC---------CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHH
Confidence 3333344555555555555555555554444 677888888888889999999999876533 3468999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG 495 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 495 (660)
+...|+-.|..++|+..+..+-+. ++-....+..+..-|.+.++.+.|.++|.++.. -.+.|+.+++-+.-.....+
T Consensus 352 fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYE 428 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHh
Confidence 999999999999999998887764 122222333344568888999999999999864 23445667777777777888
Q ss_pred CHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH
Q 048281 496 QLNEAYELALAMPN--------EA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 496 ~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 566 (660)
.+.+|..+|+.... .+ -..+++.|+.+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+++.|
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH
Confidence 99999998876542 11 3457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048281 567 LDIRHTMRQ 575 (660)
Q Consensus 567 ~~~~~~~~~ 575 (660)
...|.+..-
T Consensus 509 id~fhKaL~ 517 (611)
T KOG1173|consen 509 IDHFHKALA 517 (611)
T ss_pred HHHHHHHHh
Confidence 999988754
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.9e-11 Score=124.08 Aligned_cols=275 Identities=9% Similarity=0.012 Sum_probs=201.4
Q ss_pred CCCHHHHHHHHHhcCCC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHhcccchHHHHH
Q 048281 283 GKCVGEALEIFEMMEEK--DIF-SWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFS--TVLPACSHLAALMHGRQ 357 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 357 (660)
.|+++.|++.+....+. ++. .|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765442 222 2333344447788888888888888764 45543332 22456677888888888
Q ss_pred HHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---H--------hHHHHHHHHHHhcCCh
Q 048281 358 IHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKD---V--------ASWNIMILGYGMDGQG 426 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~ 426 (660)
.++.+.+..+.. +.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.
T Consensus 175 ~l~~~~~~~P~~---------~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 175 GVDKLLEVAPRH---------PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHhcCCCC---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 888887777555 7788888889999999999998888876421 1 1333344444444555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 427 KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
+...++++.+.+. .+.++.....+..++...|+.++|..++++..+ ..|+.... ++.+....++.+++.+..++
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHH
Confidence 6666677766443 355777888899999999999999999999876 34454322 23333456999999999987
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 507 MPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 507 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
... +.|+..+.++...|...+++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 654 3456678899999999999999999999999999976 5678999999999999999999997644
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2e-09 Score=102.91 Aligned_cols=460 Identities=9% Similarity=0.035 Sum_probs=335.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048281 98 NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVN 177 (660)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (660)
+...|-...+-=..++++..|..+|++....... +...|---+..=.+.+.+..|..+++..+..=+..|. .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 3444544444445677888999999999886533 6666777777778889999999999999886443333 3444555
Q ss_pred HhHhcCChHHHHHHHccCC--CCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHH
Q 048281 178 TYLKCQFMEEALKVFEELP--LRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGR 255 (660)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 255 (660)
+=-..|++..|.++|++-. +|+..+|++.|.-=.+...++.|..++++..- +.|+..+|.--.+.=-+.|+...+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 5567799999999999865 68999999999999999999999999999976 6699999999888889999999999
Q ss_pred HHHHHHHHh-CC-CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC----C-ChhhHHHHHHHHHHcCChHHHHHH-----
Q 048281 256 VVHGIVVKM-GY-DSGVPVMNALIDMYGKGKCVGEALEIFEMMEE----K-DIFSWNSIMTVHEQCGNHDGTLRL----- 323 (660)
Q Consensus 256 ~~~~~~~~~-g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~~----- 323 (660)
.++..+++. |- ..+...+.+....=.++..++.|.-+|+-..+ . ....|..+...=-+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999987765 21 12233455555555667788888888765543 2 123344443333344554433322
Q ss_pred ---HHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHH--------HHhc
Q 048281 324 ---FDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDM--------YTKC 392 (660)
Q Consensus 324 ---~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~ 392 (660)
|+.+...+ +-|-.++--.++.....|+.+...++++.++..-++.. ....|...|-. -...
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~-------ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS-------EKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444432 34556777777777788999999999999987654432 12233322222 1246
Q ss_pred CCHHHHHHHHhcCC---CCCHhHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 048281 393 GSMRDAQMVFTKMS---KKDVASWN----IMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGR 465 (660)
Q Consensus 393 g~~~~A~~~~~~~~---~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 465 (660)
.+++.+.++|+... .....|+. ....--.++.+...|.+++...+ |..|-..+|...|..-.+.+.++...
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 78889999997654 23334443 33444557789999999998876 56899999999999999999999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 466 EFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
.+++..++ -.+-+..+|......=...|+.+.|..+|+-...+|. ...|.+.|..-...|.++.|..+|+++++
T Consensus 458 kLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 458 KLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999987 2344567888888888899999999999998776553 45788888888889999999999999999
Q ss_pred cCCCCcchHHHHHHHHH-----hCC-----------ChHHHHHHHHHHH
Q 048281 542 LEPGHCGNYVLMSNIYV-----AGG-----------KYEEVLDIRHTMR 574 (660)
Q Consensus 542 ~~p~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 574 (660)
..+.. .+|...+.--. ..| ....|.++|+...
T Consensus 536 rt~h~-kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 536 RTQHV-KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hcccc-hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 87654 36666665443 334 5667888887763
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=5e-12 Score=125.92 Aligned_cols=276 Identities=12% Similarity=0.036 Sum_probs=216.2
Q ss_pred CHHHHHHHHHhcCCC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHhcccchHHHHHHH
Q 048281 285 CVGEALEIFEMMEEK--DI-FSWNSIMTVHEQCGNHDGTLRLFDRMLSAG--FQPDLVTFSTVLPACSHLAALMHGRQIH 359 (660)
Q Consensus 285 ~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 359 (660)
+..+|...|..+++. |+ .....+..+|...+++++|.++|+...+.. ..-+...|++++..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886652 33 445667889999999999999999998752 112556788777654321 111122
Q ss_pred -HHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 048281 360 -GYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK---DVASWNIMILGYGMDGQGKEALDMFSC 435 (660)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 435 (660)
+.+++..... +.+|.++.+.|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.
T Consensus 410 aq~Li~~~~~s---------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 410 AQDLIDTDPNS---------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHhhCCCC---------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 2222332222 889999999999999999999999998854 456888888888899999999999998
Q ss_pred HHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC
Q 048281 436 MCEAKLKPDE-VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EA 511 (660)
Q Consensus 436 m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 511 (660)
.+. +.|.. ..|..+...|.++++++.|.-.|+.+.+ +.| +......+...+.+.|+.++|+++++++.. +.
T Consensus 481 Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 481 ALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 875 23332 3455677789999999999999999975 444 556778888999999999999999999643 55
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
|+..--.-+..+...+++++|+..++++.++-|++...+..++.+|.+.|+.+.|+.-|.-+.+...
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6666666777888899999999999999999999999999999999999999999998888776543
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.2e-10 Score=119.13 Aligned_cols=290 Identities=10% Similarity=-0.018 Sum_probs=161.7
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHH
Q 048281 212 QIGEFHKALEVFRRMSKEGIWMSRF-TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEAL 290 (660)
Q Consensus 212 ~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 290 (660)
..|+++.|.+.+.+..+. .|++. .+-....+..+.|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 23332 233334555566777777777666655432222223334466667777777777
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCc
Q 048281 291 EIFEMMEE--K-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGL 367 (660)
Q Consensus 291 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 367 (660)
..++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+.. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 77777654 2 4456667777777777777777777777776533222 1211100
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048281 368 AKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD 444 (660)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 444 (660)
..+..++..-......+...+.+...+. .+...+..++..+...|++++|.+++++..+. .||
T Consensus 230 ------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd 295 (409)
T TIGR00540 230 ------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGD 295 (409)
T ss_pred ------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCC
Confidence 0011111111111223344444444442 36777778888888888888888888888875 344
Q ss_pred HHHH--HHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHH
Q 048281 445 EVTF--VGV-LSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALA--M-PNEANPVVWRT 518 (660)
Q Consensus 445 ~~~~--~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~ 518 (660)
.... ..+ .......++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 4321 111 1122334566666666666655222222214555666666666666666666662 2 22466666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
+...+.+.|+.++|.+++++.+.
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666544
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=1.7e-10 Score=117.94 Aligned_cols=279 Identities=9% Similarity=0.015 Sum_probs=173.1
Q ss_pred CCCHHHHHHHHHhcCCC--C-hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHhcccchHHHHH
Q 048281 283 GKCVGEALEIFEMMEEK--D-IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLV--TFSTVLPACSHLAALMHGRQ 357 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~ 357 (660)
.|+++.|.+.+....+. + ...+-.......+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555554331 1 122333344455556666666666665543 23321 22223444555666666666
Q ss_pred HHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHH----HHHHHHHhcCChHHHH
Q 048281 358 IHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK---DVASWN----IMILGYGMDGQGKEAL 430 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~ 430 (660)
.++.+.+..+.. +.++..+...|.+.|+++.|.+.+..+.+. +...+. ....++...+..+++.
T Consensus 175 ~l~~l~~~~P~~---------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 175 GVDKLLEMAPRH---------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred HHHHHHHhCCCC---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 666666655433 556666677777777777777776666532 222221 1111223333334444
Q ss_pred HHHHHHHHcCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 048281 431 DMFSCMCEAKL---KPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM--LGRAGQLNEAYELAL 505 (660)
Q Consensus 431 ~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 505 (660)
+.+..+.+... +.+...+..+...+...|+.++|.+.+++..+. .+.+......++.. ....++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 55555555421 237788888889999999999999999999873 22222110012222 234577888888887
Q ss_pred hCCC--CCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 506 AMPN--EANP--VVWRTLLAASRLHGNTDLAEIAAQ--RVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 506 ~~~~--~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+... +.|+ ....++...|.+.|++++|.+.|+ ...+..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7543 3345 677899999999999999999999 577778865 5577999999999999999999998643
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=4.6e-10 Score=115.07 Aligned_cols=461 Identities=9% Similarity=-0.012 Sum_probs=231.7
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCC----CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 048281 53 EIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSC----EPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQL 128 (660)
Q Consensus 53 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 128 (660)
.++..+...|+.|+..+|.++|..||..|+++.|- +|. .+. +-+...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~-fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFP-FMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chh-hhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 56788899999999999999999999999999998 776 442 235567999999999999888765
Q ss_pred CCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHH-------hCCCCChh--------------HHHHHHHHhHhcCChHH
Q 048281 129 GVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFK-------LGLDLDVY--------------IGSALVNTYLKCQFMEE 187 (660)
Q Consensus 129 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~~~~~~--------------~~~~li~~~~~~g~~~~ 187 (660)
.|...||..|+.+|...||+..-..+-+.+.. .|.-.... -....+....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 68899999999999999997652222221221 11100000 00111222222233333
Q ss_pred HHHHHccCCCC--CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhC
Q 048281 188 ALKVFEELPLR--DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMG 265 (660)
Q Consensus 188 A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (660)
+.+++..++.. +. +...+++-+... .....+++...+...-.|++.+|..++.+....|+.+.|..++..|.+.|
T Consensus 158 llkll~~~Pvsa~~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHhhCCcccccc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 44443333321 00 000011111111 11111222111111013555555555555555555555555555555555
Q ss_pred CCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 048281 266 YDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPA 345 (660)
Q Consensus 266 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 345 (660)
++.+..-+-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..
T Consensus 235 fpir~HyFwpLl~g----------------------------------~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG----------------------------------INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred CCcccccchhhhhc----------------------------------CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 55544443333322 34444444445555555555555554444433
Q ss_pred HhcccchHH------------------------HH------------HHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH
Q 048281 346 CSHLAALMH------------------------GR------------QIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY 389 (660)
Q Consensus 346 ~~~~~~~~~------------------------a~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 389 (660)
+...|.... +. ..+....-.|++.. ..+|...+ -.
T Consensus 281 ~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~--------~aiws~c~-~l 351 (1088)
T KOG4318|consen 281 QLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDIL--------EAIWSMCE-KL 351 (1088)
T ss_pred hhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccc--------hHHHHHHH-HH
Confidence 333211111 00 01111111233222 22222222 12
Q ss_pred HhcCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHhcCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHhccCC
Q 048281 390 TKCGSMRDAQMVFTKMSKK-------DVASWNIMILGYGMDGQGKEALDMFS--CMCEAKLKPDEVTFVGVLSACSHSGF 460 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~g~ 460 (660)
..+|+-++.+.+-..+..| ++..|..++.-|.+.-+..-...++. +.+.. ..+....--+.....+. .
T Consensus 352 ~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-r 428 (1088)
T KOG4318|consen 352 RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-R 428 (1088)
T ss_pred HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-C
Confidence 2256666666666555432 34455555554443322111111111 11111 00000000011111100 1
Q ss_pred HHHHHHHHHHhHHh---cCCCC-------ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 048281 461 LSQGREFLPLMESR---YGVVP-------TIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 461 ~~~a~~~~~~~~~~---~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 530 (660)
...+.+-+...... ..+.| -...-+.++..+.+.-+..+++...++.....-...|..|+.-+..++..+
T Consensus 429 kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle 508 (1088)
T KOG4318|consen 429 KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLE 508 (1088)
T ss_pred cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHH
Confidence 11111111111100 01111 123445566666776666777655554433223467899999999999999
Q ss_pred HHHHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 531 LAEIAAQRVFQLEPG---HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.|.....+....+.. +-.-+..+.+++.+.+...++..+++.+.+
T Consensus 509 ~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 509 YALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 999999887654221 224577899999999999999999999876
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=1.3e-12 Score=126.74 Aligned_cols=188 Identities=15% Similarity=0.107 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHhcc
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEE--KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAG-FQPDLVTFSTVLPACSHL 349 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~ 349 (660)
+..++.. ...+++++|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+++...|......+.+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 3334433 344555555555444322 233444445555555555555555555544321 122333333444444444
Q ss_pred cchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCh
Q 048281 350 AALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQG 426 (660)
Q Consensus 350 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 426 (660)
|+.+.|...++.+++..+.. ..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|++
T Consensus 160 G~~~~A~~~~~~al~~~P~~---------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDD---------PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT----------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred CCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 44444444444444443332 3334444444444444444333333222 12333444444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 048281 427 KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLM 471 (660)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 471 (660)
++|+.+|++..+.. +.|......+..++...|+.++|.++..++
T Consensus 231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 44444444444421 223333444444444444444444444433
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.4e-09 Score=102.30 Aligned_cols=287 Identities=13% Similarity=0.020 Sum_probs=194.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHH
Q 048281 213 IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEI 292 (660)
Q Consensus 213 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 292 (660)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+..++.++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777655544322 2345555566667777777777777766664455666666677777777777777776
Q ss_pred HHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccC
Q 048281 293 FEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAK 369 (660)
Q Consensus 293 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 369 (660)
..++.+ .++.........|.+.|++.....++..|.+.|+--|+..-..=
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le--------------------------- 228 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE--------------------------- 228 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH---------------------------
Confidence 665543 46677778888888888888888888888888765554221100
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 048281 370 NGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV 446 (660)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 446 (660)
..+|+.+++-....+..+.-...|+..+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+-.
T Consensus 229 ---------~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 229 ---------QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred ---------HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 3344445544444444444455566555 3356666677778888888888988888888887766622
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRL 525 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~ 525 (660)
.+-.+.+.++...-++..+...+.++..| ..+.+|...|.+.+.|.+|.+.|+.... .|+...|+-+..++.+
T Consensus 300 ----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 300 ----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ 373 (400)
T ss_pred ----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 22356677777777777777766444444 6777888888888888888888876433 6778888888888888
Q ss_pred cCChHHHHHHHHHHHhc
Q 048281 526 HGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 526 ~g~~~~A~~~~~~~~~~ 542 (660)
.|+.++|.++.++.+-+
T Consensus 374 ~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 374 LGEPEEAEQVRREALLL 390 (400)
T ss_pred cCChHHHHHHHHHHHHH
Confidence 88888888888877654
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=1.3e-07 Score=94.13 Aligned_cols=302 Identities=14% Similarity=0.111 Sum_probs=178.9
Q ss_pred CCchhHHHHHHHHHHhCC-----CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh-------hhHHHHHHHHHHcCC
Q 048281 249 GFFKNGRVVHGIVVKMGY-----DSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDI-------FSWNSIMTVHEQCGN 316 (660)
Q Consensus 249 ~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~ 316 (660)
|+..+-...+.++++.-- ..-...|..+...|-..|+++.|..+|++..+-+- .+|..-...=.++.+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 445555556666655411 11233678889999999999999999999876322 345555566667788
Q ss_pred hHHHHHHHHHHhhcCCC----------C-------CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcch
Q 048281 317 HDGTLRLFDRMLSAGFQ----------P-------DLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDV 379 (660)
Q Consensus 317 ~~~a~~~~~~m~~~g~~----------p-------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 379 (660)
++.|++++++.....-. | +...|+..+..-...|-++....+++.+++..+.. +
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT---------P 511 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT---------P 511 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---------H
Confidence 89999988876532111 1 11233344444455677888889999998887765 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCH-hHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMS----KKDV-ASWNIMILGYGMD---GQGKEALDMFSCMCEAKLKPDEVTFVGV 451 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l 451 (660)
.+.-.....+-...-++++.+++++-. -|++ ..|+..+.-+.+. ...+.|..+|++.++ |.+|...-+..|
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyL 590 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYL 590 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Confidence 443344444555677889999998765 3444 4787776665542 368999999999999 677766544444
Q ss_pred HHH--HhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHH---HHHHHHHHH
Q 048281 452 LSA--CSHSGFLSQGREFLPLMESRYGVVPTI--EHYTCVIDMLGRAGQLNEAYELALAMPN-EANPV---VWRTLLAAS 523 (660)
Q Consensus 452 l~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~l~~~~ 523 (660)
+-+ --.-|....|+.+++.+.. ++++.. ..|+..|.--+..=-+.....+|++..+ =|+.. ...-....-
T Consensus 591 lYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlE 668 (835)
T KOG2047|consen 591 LYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLE 668 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 433 2345788889999998765 555543 4555555422211111112222222211 12222 122223334
Q ss_pred HHcCChHHHHHHHHHHHhc-CCC-CcchHHHHHHHHHhCCC
Q 048281 524 RLHGNTDLAEIAAQRVFQL-EPG-HCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~ 562 (660)
.+.|..+.|..++...-++ +|. ++..|...=.--.+.|+
T Consensus 669 tklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 669 TKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred hhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 5667777777777776665 443 23334444444445565
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=5.9e-09 Score=96.04 Aligned_cols=176 Identities=13% Similarity=0.112 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048281 395 MRDAQMVFTKMSK-----KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLP 469 (660)
Q Consensus 395 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 469 (660)
+.-|...|+-.-. .++.--.++..++.-..++++++..+..+..--..-|...| .+..+.+..|.+.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 3445555554331 12334455666666667888888888888776444444444 46789999999999999998
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 470 LMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTL-LAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
.+... .++.+..-...|.++|.++++.+-|++++-++..+.+..+...+ ..-|.+.+.+--|-+.|..+..++|. |+
T Consensus 418 ~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pE 495 (557)
T KOG3785|consen 418 RISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PE 495 (557)
T ss_pred hhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cc
Confidence 87542 33434444456788999999999999999988866566555544 46789999999999999998888884 44
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNP 582 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 582 (660)
.| .|+...-..+|+.+.....+|.|
T Consensus 496 nW---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 496 NW---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred cc---------CCccchHHHHHHHHHcCCCCCCc
Confidence 44 34445555666666554444433
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.3e-09 Score=99.25 Aligned_cols=267 Identities=12% Similarity=0.075 Sum_probs=157.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCC-C--chHHHHHHHHHHcCCCHHHH
Q 048281 213 IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDS-G--VPVMNALIDMYGKGKCVGEA 289 (660)
Q Consensus 213 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~~~~~~A 289 (660)
+.+.++|.++|-+|.+.. +-+..+..++-+.+.+.|..+.|.++++.+.++.--+ + ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567788888888886631 1222344566677777788888888877776652111 1 12334566777788888888
Q ss_pred HHHHHhcCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC
Q 048281 290 LEIFEMMEEKD---IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNG 366 (660)
Q Consensus 290 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 366 (660)
+.+|..+.+.+ ..+...|+..|-...+|++|+++-+++.+.|-.+..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 88888776633 235566777787888888888877777766544332211
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048281 367 LAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP 443 (660)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (660)
...|.-|...+....+++.|..++.+..+. .+..--.+.+.+...|+++.|.+.++...+.+..-
T Consensus 180 ------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 180 ------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred ------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 444555555555566666666666655422 23333445566677777777777777777664333
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 048281 444 DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYEL-ALAMPNEANPVVWRTLLAA 522 (660)
Q Consensus 444 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~ 522 (660)
-+.+...|..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.+.|... .+.+..+|+...+..++..
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3445566666777777777777777766552 22333333333333333333333333 3334445555555544443
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=4.9e-08 Score=99.45 Aligned_cols=400 Identities=14% Similarity=0.066 Sum_probs=266.3
Q ss_pred CCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hHH
Q 048281 164 GLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR---DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRF-TVT 239 (660)
Q Consensus 164 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~ 239 (660)
.+.-|..+|..|.-+..++|+++.+-+.|++...- ....|+.+-..|...|.-..|+.+++.-......|+.. .+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35567888888888999999999999999987643 55679999999999999999999998876654345444 343
Q ss_pred HHHHHHH-ccCCchhHHHHHHHHHHh--CC--CCCchHHHHHHHHHHcCC-----------CHHHHHHHHHhcCCC---C
Q 048281 240 GVLSALI-MMGFFKNGRVVHGIVVKM--GY--DSGVPVMNALIDMYGKGK-----------CVGEALEIFEMMEEK---D 300 (660)
Q Consensus 240 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~~-----------~~~~A~~~~~~~~~~---~ 300 (660)
..-+.|. +.+..+++..+-..+++. +. ......|..+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444 446777777777666662 21 223445555555554321 134566677776442 3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchh
Q 048281 301 IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVF 380 (660)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (660)
+.+..-+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|..+.+.....-...- .
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~---------~ 548 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH---------V 548 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh---------h
Confidence 3333334455777889999999999999887677888888888888888999999998887754422210 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc--------------------------CC----CC-C-HhHHHHHHHHHHhcCChHH
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTK--------------------------MS----KK-D-VASWNIMILGYGMDGQGKE 428 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~--------------------------~~----~~-~-~~~~~~li~~~~~~g~~~~ 428 (660)
....-++.-...++.++|...... +. ++ + +.++..+..-... +...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~ 626 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKS 626 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhh
Confidence 000111111223333333332221 11 00 1 1122222111110 0000
Q ss_pred HHHHHHHHHHcCCCC--CH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 048281 429 ALDMFSCMCEAKLKP--DE------VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEA 500 (660)
Q Consensus 429 A~~~~~~m~~~g~~p--~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 500 (660)
+..-.. +...-+.| +. ..|......+...+..++|...+.++.+ ..+.....|......+...|++++|
T Consensus 627 ~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 627 AGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 000000 11111222 21 1344455677888999999988888876 4556678888888999999999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 501 YELALAMPN--EANPVVWRTLLAASRLHGNTDLAEI--AAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 501 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.+.|..... +.++.+..++...+...|+...|.. ++..+++++|.+++.|..++.++.+.|+.++|.+.|+...+.
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999987543 5567799999999999999888888 999999999999999999999999999999999999988664
Q ss_pred C
Q 048281 577 N 577 (660)
Q Consensus 577 ~ 577 (660)
.
T Consensus 784 e 784 (799)
T KOG4162|consen 784 E 784 (799)
T ss_pred c
Confidence 3
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.8e-10 Score=108.93 Aligned_cols=196 Identities=14% Similarity=0.021 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 56788889999999999999999997652 356788889999999999999999999999864 34556777788889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
...|++++|.+.++.+.+..........+..+...+...|++++|...+++... +.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987322233456778889999999999999999988654 345678889999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 534 IAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999888888888999999999999999999888755
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.6e-09 Score=101.87 Aligned_cols=277 Identities=14% Similarity=0.097 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 048281 283 GKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIH 359 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 359 (660)
.|++.+|++...+-.+ ..+..|-.-+.+-.+.|+.+.+-.++.+.-+.--.++.....+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777888877766443 2344555556667777888888888888877533445555556666677788888888888
Q ss_pred HHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-----------HhHHHHHHHHHHhcCChHH
Q 048281 360 GYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKD-----------VASWNIMILGYGMDGQGKE 428 (660)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~ 428 (660)
..+.+.+..+ +.+......+|.+.|++.....++..+.+.. ..+|+.++.=....+..+.
T Consensus 177 ~~ll~~~pr~---------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 177 DQLLEMTPRH---------PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred HHHHHhCcCC---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 8887777766 7788888888999999988888888887432 2367777776666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 429 ALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 429 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
-...|+..... .+-++..-.+++.-+.+.|+.++|.++..+..++ +..|+ ...++. ..+-++.+.=++..++-.
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLIP-RLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHHh-hcCCCCchHHHHHHHHHH
Confidence 66677766554 4667777788888999999999999999999985 77776 222222 234555444444443321
Q ss_pred C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 509 N--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 509 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
. +.++..+.+|..-|.+++.+.+|...|+.+++..|. ...|..++.++.+.|+.++|.+.+++...
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 345588999999999999999999999999999885 58899999999999999999999988753
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1.8e-09 Score=109.18 Aligned_cols=239 Identities=18% Similarity=0.202 Sum_probs=150.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHhhc---CCCCCHH
Q 048281 272 VMNALIDMYGKGKCVGEALEIFEMMEE----------KDIF-SWNSIMTVHEQCGNHDGTLRLFDRMLSA---GFQPDLV 337 (660)
Q Consensus 272 ~~~~li~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~ 337 (660)
+...|..+|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++... ..-++..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 333455555555555555555554322 1111 1234566677778888888887776632 1111111
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHH
Q 048281 338 TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMI 417 (660)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 417 (660)
.+ ..+++.|..+|.+.|++++|...++
T Consensus 281 ~v---------------------------------------a~~l~nLa~ly~~~GKf~EA~~~~e-------------- 307 (508)
T KOG1840|consen 281 AV---------------------------------------AATLNNLAVLYYKQGKFAEAEEYCE-------------- 307 (508)
T ss_pred HH---------------------------------------HHHHHHHHHHHhccCChHHHHHHHH--------------
Confidence 11 4566667777888888887777654
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCC----ChHHHHHHHHH
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPDEV-TFVGVLSACSHSGFLSQGREFLPLMESRYG--VVP----TIEHYTCVIDM 490 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~ 490 (660)
.|++++++.... ..|... -++.+...|+..+.+++|..+++...+.+. ..+ -..+++.|...
T Consensus 308 ----------~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 308 ----------RALEIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred ----------HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 344444441111 122222 233444456666777777766666554322 111 13578888888
Q ss_pred HhhcCCHHHHHHHHHhCCC-------C--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCc---chHHHH
Q 048281 491 LGRAGQLNEAYELALAMPN-------E--A-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQL----EPGHC---GNYVLM 553 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~-------~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~---~~~~~l 553 (660)
|...|++++|.++++++.. + + ....++.|...|.+.+++++|.++|.+.... .|+++ .+|..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 9999999999888887542 1 1 2346778888999999999999999887653 55554 578899
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 048281 554 SNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~~~ 574 (660)
+.+|.+.|++++|.++.+.+.
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999874
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=5.2e-12 Score=85.46 Aligned_cols=50 Identities=38% Similarity=0.747 Sum_probs=43.8
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhh
Q 048281 97 PNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCD 146 (660)
Q Consensus 97 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 146 (660)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.4e-08 Score=94.45 Aligned_cols=219 Identities=11% Similarity=-0.036 Sum_probs=171.6
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH
Q 048281 310 VHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY 389 (660)
Q Consensus 310 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 389 (660)
.+.-.|+.-.|...|+..+.....++. .|..+...|.+..+.++..+.|....+.+... +.+|..-.+++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n---------~dvYyHRgQm~ 404 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPEN---------PDVYYHRGQMR 404 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC---------CchhHhHHHHH
Confidence 345568888888888888876444333 26666677888888899999999888877665 67888888888
Q ss_pred HhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048281 390 TKCGSMRDAQMVFTKMSKK---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
.-.+++++|..-|++...- ++..|-.+..+.-+.+++++++..|++.++. ++.-+..|+.....+..+++++.|.+
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 8899999999999987743 5567777777777888999999999999986 45566788989999999999999999
Q ss_pred HHHHhHHhcCCCCC---------hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 048281 467 FLPLMESRYGVVPT---------IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIA 535 (660)
Q Consensus 467 ~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 535 (660)
.|+..++ +.|+ +.+.-+++..-.+ +++..|..++++..+ +.....+.+|...-.+.|+.++|+++
T Consensus 484 ~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 484 QYDKAIE---LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHHh---hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999875 2332 2233333333333 899999999998765 34567899999999999999999999
Q ss_pred HHHHHhcC
Q 048281 536 AQRVFQLE 543 (660)
Q Consensus 536 ~~~~~~~~ 543 (660)
|++...+-
T Consensus 560 FEksa~lA 567 (606)
T KOG0547|consen 560 FEKSAQLA 567 (606)
T ss_pred HHHHHHHH
Confidence 99987764
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.6e-08 Score=90.80 Aligned_cols=303 Identities=9% Similarity=-0.046 Sum_probs=210.9
Q ss_pred CCCChhhHHHHHHHHHcc--CCchhHHHHHHHHHHhC-CCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh---hH
Q 048281 231 IWMSRFTVTGVLSALIMM--GFFKNGRVVHGIVVKMG-YDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIF---SW 304 (660)
Q Consensus 231 ~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 304 (660)
+.|...+...-+.++++. ++...+.+.+-.+.+.. ++.|+.....+..+|...|+.++|+..|++..--|+. ..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 334444555555555443 44444555555554443 5667888899999999999999999999987654443 33
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHH
Q 048281 305 NSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNA 384 (660)
Q Consensus 305 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (660)
......+.+.|++++...+...+.... .-+...|-.-....-...+++.|..+-+..++.+... ...+-.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~---------~~alil 339 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN---------HEALIL 339 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc---------chHHHh
Confidence 333455677888888888887776532 1122222222333345567777777777776665444 555555
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccC
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMS--K-KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVL-SACS-HSG 459 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g 459 (660)
-...+...|+.++|.-.|+... . -+..+|.-|+.+|...|++.+|..+-+..... +..+..+...+. ..|. ...
T Consensus 340 KG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 340 KGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred ccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 5667778899999988888765 3 37789999999999999999998887776654 344555555442 2333 333
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048281 460 FLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAGQLNEAYELALAMP-NEANPVVWRTLLAASRLHGNTDLAEIAAQ 537 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (660)
--++|..+++...+ +.|+ ....+.+...+.+.|+.++++.++++.. ..+|.+..+.|...++..+.+.+|...|.
T Consensus 419 ~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 419 MREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred hHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45778888887753 5555 3566778888889999999999998854 46888999999999999999999999999
Q ss_pred HHHhcCCCCc
Q 048281 538 RVFQLEPGHC 547 (660)
Q Consensus 538 ~~~~~~p~~~ 547 (660)
.++.++|++.
T Consensus 496 ~ALr~dP~~~ 505 (564)
T KOG1174|consen 496 KALRQDPKSK 505 (564)
T ss_pred HHHhcCccch
Confidence 9999999873
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=8.5e-07 Score=88.59 Aligned_cols=499 Identities=10% Similarity=0.054 Sum_probs=307.7
Q ss_pred hhHHHHHHHHhHcCCChhHHHHHHccC----CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 048281 67 PLSITSLINMYSKCCQMKYALFVFNNL----SCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIK 142 (660)
Q Consensus 67 ~~~~~~ll~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 142 (660)
+.+|-..+....++|++...+..|+.. ........|...+.-....+-++-++.+|++..+. ++..-.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345566666677788888888888851 23346667999999999999999999999998874 3333666778
Q ss_pred HHhhhCCHHHHHHHHHHHHHhC------CCCChhHHHHHHHHhHhc---CChHHHHHHHccCCCC----CchhHHHHHHH
Q 048281 143 CCCDVMAVLEVKKIHGLVFKLG------LDLDVYIGSALVNTYLKC---QFMEEALKVFEELPLR----DVVLWNAMVNG 209 (660)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~----~~~~~~~li~~ 209 (660)
.++..+++++|.+.+...+... .+.+...|.-+-+..++. +.--....+++.+..+ -...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8889999999999888776431 234455666655555544 2233344555555543 23579999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC----------------------chhHHHHHHHHHHhC--
Q 048281 210 YAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGF----------------------FKNGRVVHGIVVKMG-- 265 (660)
Q Consensus 210 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~g-- 265 (660)
|.+.|.++.|.++|++....- .+..-|..+.++|++-.. ++....-++.+....
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999999987642 233344455554433211 111222222222221
Q ss_pred ---------CCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---C------ChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 048281 266 ---------YDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE---K------DIFSWNSIMTVHEQCGNHDGTLRLFDRM 327 (660)
Q Consensus 266 ---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~a~~~~~~m 327 (660)
-+.++..|..-+.. ..|+..+-...|.+..+ | -...|..+.+.|-..|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 01122222222222 23555566666655432 1 2246889999999999999999999998
Q ss_pred hhcCCCCC---HHHHHHHHHHHhcccchHHHHHHHHHHHHhCcc-----CCCCCCC----CcchhHHHHHHHHHHhcCCH
Q 048281 328 LSAGFQPD---LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLA-----KNGSCKD----IDDVFMNNALMDMYTKCGSM 395 (660)
Q Consensus 328 ~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~li~~~~~~g~~ 395 (660)
.+-..+-- ..+|..-...=.+..+++.|..+.+......-. .++..+. ..+..+|...++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76533221 112222222223455667777766655322111 0111111 11245666667777778888
Q ss_pred HHHHHHHhcCCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cCCHHHHHHHH
Q 048281 396 RDAQMVFTKMSKKDVASWNIMI---LGYGMDGQGKEALDMFSCMCEAKLKPDE-VTFVGVLSACSH---SGFLSQGREFL 468 (660)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g~~~~a~~~~ 468 (660)
+....+++++..-.+.|=..++ .-+-.+.-++++.++|++-+..--.|+. ..|+..+.-+.+ ...++.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888899888743222211121 2233455678888888877665444554 356666654432 34799999999
Q ss_pred HHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 469 PLMESRYGVVPTI--EHYTCVIDMLGRAGQLNEAYELALAMPNEAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 469 ~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
+++.+ +.+|.. ..|-.....=.+-|....|+.++++...... ...||..|.--...=-+..-..+|+++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99998 776654 2333333444456888999999999765322 246776665433333345567889999998
Q ss_pred CCCCc--chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 543 EPGHC--GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 543 ~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
-|++. ......+..-.+.|..+-|+.++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 77653 2344566777788999999999876544
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=6.4e-09 Score=94.90 Aligned_cols=287 Identities=14% Similarity=0.109 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHhcCCCChhhH---HHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHhcccchHHHH
Q 048281 283 GKCVGEALEIFEMMEEKDIFSW---NSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL---VTFSTVLPACSHLAALMHGR 356 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~ 356 (660)
+.+.|+|.+.|-+|.+.|+.++ -+|.+.|-+.|..|.|+++-+.+.++.--+.. ...-.+.+-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3456667776666666544433 34566666667777777766666653111111 12223334455666677777
Q ss_pred HHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH--------hHHHHHHHHHHhcCChHH
Q 048281 357 QIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDV--------ASWNIMILGYGMDGQGKE 428 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~ 428 (660)
++|..+.+.+.-. ......|+..|-+..++++|+++-+++.+.+. ..|.-+...+....+.+.
T Consensus 128 ~~f~~L~de~efa---------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 128 DIFNQLVDEGEFA---------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HHHHHHhcchhhh---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 7776666544322 44566777788888888888877765543222 234455566666788999
Q ss_pred HHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 048281 429 ALDMFSCMCEAKLKPDEVTFV-GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAM 507 (660)
Q Consensus 429 A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 507 (660)
|..++.+..+. .|+.+--+ .+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++
T Consensus 199 A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 199 ARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999886 44443333 3445788899999999999999884 55555678889999999999999999998875
Q ss_pred CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHH-HH--hCCChHHHHHHHHHHHhCCCccCC
Q 048281 508 PN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI-YV--AGGKYEEVLDIRHTMRQQNVRKNP 582 (660)
Q Consensus 508 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~~~a~~~~~~~~~~~~~~~~ 582 (660)
.. .+.+..-..+...-....-.+.|...+.+-+..+|.--. +..+... .. ..|++.+....++.|....++..|
T Consensus 276 ~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 276 METNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred HHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 44 455555555555555555566777777777777886533 3344443 33 356788999999999766555444
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=2.9e-11 Score=81.77 Aligned_cols=50 Identities=32% Similarity=0.519 Sum_probs=46.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048281 408 KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH 457 (660)
Q Consensus 408 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 457 (660)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5e-07 Score=89.49 Aligned_cols=465 Identities=12% Similarity=0.100 Sum_probs=259.3
Q ss_pred hhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHH--HHHH-
Q 048281 33 ATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAM--ISGF- 109 (660)
Q Consensus 33 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l--i~~~- 109 (660)
..+.+=+..+...+++++|.+....++..+ +-+...+.+=+-+..+.+.+++|+.+.+ ... -..+++.. =.+|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik-k~~--~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK-KNG--ALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH-hcc--hhhhcchhhHHHHHH
Confidence 345556677888899999999999999887 3345555666667788999999998887 222 11222222 3444
Q ss_pred -HcCCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhHhcCChH
Q 048281 110 -YSNDFAFKGLDFFNHMRQLGVLPDK-YTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDL-DVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 110 -~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~ 186 (660)
.+.+..++|+..++ |..++. .+...-...|.+.+++++|..+|+.+.+++.+- +...-..++.+-.. -
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----L 159 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----h
Confidence 46799999999988 344433 366667788999999999999999998876432 22222333322111 1
Q ss_pred HHHHHHccCCCCCchhHHHH---HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHH
Q 048281 187 EALKVFEELPLRDVVLWNAM---VNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVK 263 (660)
Q Consensus 187 ~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 263 (660)
.+. +.+..+.....+|..+ ...+...|++.+|+++++...+.+.+ .+. .++.. -+.+-.++
T Consensus 160 ~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~-eEeie~el-- 223 (652)
T KOG2376|consen 160 QVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN-EEEIEEEL-- 223 (652)
T ss_pred hHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc-hhhHHHHH--
Confidence 111 3444443333344433 34567789999999999988432110 000 00000 00000000
Q ss_pred hCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCC---Ch----hhHHHHHHHHHHcCChH-HHHHHHHHHhhcCCCCC
Q 048281 264 MGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEK---DI----FSWNSIMTVHEQCGNHD-GTLRLFDRMLSAGFQPD 335 (660)
Q Consensus 264 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~p~ 335 (660)
..+-.-|..++-..|+.++|.+++..+.+. |. +.-|.++..-....-++ .++..++..... ..
T Consensus 224 ------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---l~ 294 (652)
T KOG2376|consen 224 ------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---LA 294 (652)
T ss_pred ------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---hH
Confidence 001122344455566666666666665442 21 11222222211111111 122222222110 00
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-HhHHH
Q 048281 336 LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKD-VASWN 414 (660)
Q Consensus 336 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 414 (660)
......+ ..-.+.. ...-+.++.+| .+..+.+.++-....... ...+.
T Consensus 295 ~~~l~~L-----------------s~~qk~~------------i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~ 343 (652)
T KOG2376|consen 295 EFLLSKL-----------------SKKQKQA------------IYRNNALLALF--TNKMDQVRELSASLPGMSPESLFP 343 (652)
T ss_pred HHHHHHH-----------------HHHHHHH------------HHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHH
Confidence 0000000 0000000 12223444444 345556666666655322 23334
Q ss_pred HHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------HhHHhcCCCCChH
Q 048281 415 IMILGYG--MDGQGKEALDMFSCMCEAKLKPDE--VTFVGVLSACSHSGFLSQGREFLP--------LMESRYGVVPTIE 482 (660)
Q Consensus 415 ~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~ 482 (660)
+++.... +...+..+.+++...-+. .|.. ......+......|+++.|.+++. .+.+ .+..| .
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~ 418 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP--G 418 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--h
Confidence 4433322 222467777777777664 3443 344445566778899999999888 4443 24444 4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMP--------NEA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
+..+++..|.+.++-+.|..++.+.. ..+ -..+|.-+...-.++|+.++|...++++++.+|++......+
T Consensus 419 ~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~l 498 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHH
Confidence 55677788888777655555554432 121 123445555556778999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 048281 554 SNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~ 572 (660)
+.+|+... .+.|..+-+.
T Consensus 499 V~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 499 VTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHhcC-HHHHHHHhhc
Confidence 99988763 5666665444
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=4.7e-09 Score=111.60 Aligned_cols=244 Identities=12% Similarity=0.057 Sum_probs=178.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHh---------cccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHH
Q 048281 316 NHDGTLRLFDRMLSAGFQPDLV-TFSTVLPACS---------HLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNAL 385 (660)
Q Consensus 316 ~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (660)
+.++|..+|++..+. .|+.. .+..+..++. ..++.+.|...++.+++.++.. ...+..+
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~---------~~a~~~l 344 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN---------PQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC---------HHHHHHH
Confidence 456788888888765 55543 3333332222 2345788999999888876554 7788889
Q ss_pred HHHHHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCH
Q 048281 386 MDMYTKCGSMRDAQMVFTKMS--KK-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV-TFVGVLSACSHSGFL 461 (660)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~ 461 (660)
...+...|++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++..+...|++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCH
Confidence 999999999999999999876 33 5668888999999999999999999999986 45432 333344456668999
Q ss_pred HHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 048281 462 SQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGNTDLAEIAAQR 538 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (660)
++|...++++.+. ..| +...+..+..+|...|+.++|...++++.. .|+ ...++.+...|...| +.|...+++
T Consensus 423 eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 423 DDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 9999999998763 234 455677888999999999999999998654 344 345566666777777 488888888
Q ss_pred HHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 539 VFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 539 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+++..-..+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 499 ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 499 FLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7775222222234477888888988888777 7776654
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-07 Score=92.27 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 048281 283 GKCVGEALEIFEMMEEK---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIH 359 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 359 (660)
.+++.+..++++.+.+. +...+..-|..+...|+..+-+.+=.+|.+. .+-...+|-.+.--|...|...+|++.+
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 33444444444444332 2223333344444445544444444444443 1222334444444444455555555555
Q ss_pred HHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048281 360 GYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCM 436 (660)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 436 (660)
......+... ...|-...+.|+-.|.-+.|...+....+ .....+--+..-|.+.++...|.+.|.+.
T Consensus 336 SKat~lD~~f---------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 336 SKATTLDPTF---------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHhhcCccc---------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5554443333 44566666666666666666665554321 11112223444567778888888888887
Q ss_pred HHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCC----CChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 048281 437 CEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRY-GVV----PTIEHYTCVIDMLGRAGQLNEAYELALAMPN- 509 (660)
Q Consensus 437 ~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 509 (660)
.. +.| |+..++-+.-.....+.+.+|..+|+...... .+. .-..+++.|..+|-+++++++|+..+++...
T Consensus 407 ~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 407 LA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred Hh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 76 344 44555555555556778888888888776311 111 1335688899999999999999999998543
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048281 510 -EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI 556 (660)
Q Consensus 510 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 556 (660)
+.+..++.+++-.|...|+.+.|...|.+++.+.|++..+-..|..+
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 67888999999999999999999999999999999985554444433
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1.1e-08 Score=96.52 Aligned_cols=198 Identities=12% Similarity=0.063 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcch
Q 048281 301 IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPD-LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDV 379 (660)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 379 (660)
...+..+...+...|++++|...+++..+.. |+ ...+..+...+...|+++.|.+.++.......
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------ 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------ 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------
Confidence 3456667777777777777777777766542 32 23333444444444455555444444443322
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHS 458 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 458 (660)
.+...+..+...+...|++++|...+++.......| ....+..+..++...
T Consensus 97 ----------------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 97 ----------------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred ----------------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 233444555555556666666666666665432112 223444455566666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
|++++|...+.+..+. .+.+...+..+...+...|++++|...+++... +.+...+..+...+...|+.++|....
T Consensus 149 g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 149 GDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred CCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6777777766666552 223345566666666677777777666665432 334455556666666677777777666
Q ss_pred HHHHhc
Q 048281 537 QRVFQL 542 (660)
Q Consensus 537 ~~~~~~ 542 (660)
+.+...
T Consensus 227 ~~~~~~ 232 (234)
T TIGR02521 227 AQLQKL 232 (234)
T ss_pred HHHHhh
Confidence 665544
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=9.6e-07 Score=81.81 Aligned_cols=445 Identities=11% Similarity=0.009 Sum_probs=234.4
Q ss_pred HHHhHcCCChhHHHHHHccCCCCC---CcccH-HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCC
Q 048281 74 INMYSKCCQMKYALFVFNNLSCEP---NVFTY-NAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMA 149 (660)
Q Consensus 74 l~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 149 (660)
+.-+....++..|+.+++ ..... ..... -.+.-.+.+.|++++|+..|..+.+. -.|+...+..|.-+..-.|.
T Consensus 29 Ledfls~rDytGAislLe-fk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLE-FKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHH-HhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 445555677777777766 22110 01111 22334556667777777777776653 34555555556555556677
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 048281 150 VLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKE 229 (660)
Q Consensus 150 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 229 (660)
+.+|+++.... +.++..-..|++.-.+.++-++-..+-+.+.... .---+|.....-.-.+.+|++++.+....
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77776665433 1122333344455555566555554444433211 11222333333334556666666666543
Q ss_pred CCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhhHHH
Q 048281 230 GIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--K-DIFSWNS 306 (660)
Q Consensus 230 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ 306 (660)
+ |.-...+.-+ .-+|.+..-++-+.++++-..+ | ++.+-|.
T Consensus 181 n--~ey~alNVy~----------------------------------ALCyyKlDYydvsqevl~vYL~q~pdStiA~NL 224 (557)
T KOG3785|consen 181 N--PEYIALNVYM----------------------------------ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNL 224 (557)
T ss_pred C--hhhhhhHHHH----------------------------------HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHH
Confidence 2 2222222222 2234444444444444433222 1 2223333
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHH-HHH-HHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHH
Q 048281 307 IMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFST-VLP-ACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNA 384 (660)
Q Consensus 307 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (660)
......+.=+-.-|.+-.+++.+.+-.. ..+.. +++ -+.-..+-+.|.+++--+.+.- +.....
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I------------PEARlN 290 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI------------PEARLN 290 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhhC------------hHhhhh
Confidence 3333333222223333333333322110 11110 110 0111123345555554443332 334455
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQ-------GKEALDMFSCMCEAKLKPDEV-TFVGVLSACS 456 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 456 (660)
|+--|.+.+++.+|..+..++...++.-|-.-...++..|+ ..-|.+.|+-.-+.+..-|.. --.++.+++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 77778999999999999988875554433322223333333 334555554443444333322 1223344445
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHH-HHHHHHcCChHHHH
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE--ANPVVWRTL-LAASRLHGNTDLAE 533 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l-~~~~~~~g~~~~A~ 533 (660)
-..++++.+.+++.+.. + +..|....-.+..+++..|.+.+|+++|-++..+ .+..+|.++ .++|.+.|..+.|.
T Consensus 371 L~~qFddVl~YlnSi~s-Y-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIES-Y-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHH-H-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 55678899999998876 3 3344444456789999999999999999887652 455666665 56778889999997
Q ss_pred HHHHHHHhcCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 534 IAAQRVFQLEPGHC-GNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 534 ~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
.++-++- .|.+. .....+++.|.+.+.+--|.+.|+.+......|
T Consensus 449 ~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 449 DMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 7764321 23222 234456778889999999999999998765443
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=6.2e-09 Score=110.69 Aligned_cols=211 Identities=13% Similarity=0.029 Sum_probs=164.6
Q ss_pred cchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh---------cCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 048281 350 AALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK---------CGSMRDAQMVFTKMSK---KDVASWNIMI 417 (660)
Q Consensus 350 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li 417 (660)
++.+.|...++..++..+.. ...+..+..+|.. .+++++|...+++..+ .+...|..+.
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~---------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg 345 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNS---------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLG 345 (553)
T ss_pred HHHHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34578888888888776554 5666666665542 3457899999998763 3677888898
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcC
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPD-EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI-EHYTCVIDMLGRAG 495 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 495 (660)
..+...|++++|...|+++.+. .|+ ...+..+..++...|++++|...++.+.+ ..|+. ..+..++..+...|
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhcc
Confidence 9999999999999999999986 454 55677788889999999999999999986 33432 33344455577789
Q ss_pred CHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 496 QLNEAYELALAMPN--EA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 496 ~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
++++|...+++... +| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 99999999988643 24 45567788888999999999999999998888888777888888888888 588887887
Q ss_pred HHhC
Q 048281 573 MRQQ 576 (660)
Q Consensus 573 ~~~~ 576 (660)
+.+.
T Consensus 499 ll~~ 502 (553)
T PRK12370 499 FLES 502 (553)
T ss_pred HHHH
Confidence 7553
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=5.7e-09 Score=90.95 Aligned_cols=164 Identities=15% Similarity=0.041 Sum_probs=139.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDML 491 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 491 (660)
+...|..+|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+.+.+ --+-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 44567778999999999999999999863 33456788888889999999999999999876 3344567888899999
Q ss_pred hhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 048281 492 GRAGQLNEAYELALAMPNEAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVL 567 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 567 (660)
+..|++++|...|++....|. ..+|..+..+..+.|+.+.|...+++.++++|+.+.....+++...+.|++.+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998765433 4588888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 048281 568 DIRHTMRQQNV 578 (660)
Q Consensus 568 ~~~~~~~~~~~ 578 (660)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99999877654
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.7e-09 Score=98.53 Aligned_cols=225 Identities=11% Similarity=0.040 Sum_probs=152.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHH
Q 048281 305 NSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNA 384 (660)
Q Consensus 305 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (660)
+.+.+.|.+.|.+.+|.+.|+.-.+. .|-..||..+-+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLsk---------------------------------------- 264 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSK---------------------------------------- 264 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHH----------------------------------------
Confidence 45666666777777776666666554 333334444444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSK--K-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFL 461 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 461 (660)
.|.+..+...|+.+|.+-.. | |+....-+.+.+-..++.++|.++|+...+.. +.+......+...|.-.+++
T Consensus 265 ---vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 265 ---VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred ---HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCCh
Confidence 44444555555555544331 2 22233334555666677777777777776642 33444555555566666777
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHHcCChHHHHHHH
Q 048281 462 SQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN---EAN--PVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
+-|+.+|+.+.+ .|+ -+...|+.+.-++.-.++++-++.-|++... .|+ ..+|-.+.......||+..|.+.|
T Consensus 341 E~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 341 EMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 777777777776 354 3556677777777777777777777665432 233 457888888888999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 537 QRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 537 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+-++..+|++.+.+++|+.+-.+.|++++|+.+++......
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999999999999999887654
No 73
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=2.3e-07 Score=85.55 Aligned_cols=344 Identities=14% Similarity=0.105 Sum_probs=236.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHH-HHHHHhc
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSI---MTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFST-VLPACSH 348 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 348 (660)
.-.+...+...|++..|+.-|....+-|+..|.++ ...|...|+..-|+.-+.+.++. +||-..-.. --..+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34456667778888899999988888777766655 45688888888888888888875 787543221 1234678
Q ss_pred ccchHHHHHHHHHHHHhCccCCCCCC----C--CcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 048281 349 LAALMHGRQIHGYIVVNGLAKNGSCK----D--IDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILG 419 (660)
Q Consensus 349 ~~~~~~a~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 419 (660)
.|.++.|..-|+.+++.......... - ..........+..+.-.|+...|+.....+.+ -|...|..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 89999999999988877653321100 0 00011222334455567888889888887763 377788888899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHH----HHHH---H----
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEH----YTCV---I---- 488 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---~---- 488 (660)
|...|.+..|+.=++...+.. .-+..++--+-..+...|+.+.++...++.. .+.||... |..| .
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999999888877653 3344455555667778899999888888875 45666432 2111 1
Q ss_pred --HHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 048281 489 --DMLGRAGQLNEAYELALAM-PNEANP-----VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 489 --~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 560 (660)
....+.++|.++.+-.+.. ..+|.. ..+..+-.++...+++.+|++...++++.+|++..++.--+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 1234566777777776663 334442 23444556778889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCcccCceeeccCCChhh
Q 048281 561 GKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGDCCAGTLFDSDSTASG 640 (660)
Q Consensus 561 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~p~~~~~~~~~~~~~ 640 (660)
..|++|+.-+++..+.+- +|. .+..-+.+..+-.+..|......++.+.-+++.
T Consensus 355 E~YD~AI~dye~A~e~n~-----------------------sn~---~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK 408 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNE-----------------------SNT---RAREGLERAKRLKKQSGKRDYYKILGVKRNASK 408 (504)
T ss_pred HHHHHHHHHHHHHHhcCc-----------------------ccH---HHHHHHHHHHHHHHHhccchHHHHhhhcccccH
Confidence 999999999999887543 222 223333333333445566666667777777777
Q ss_pred hhHhhhHH
Q 048281 641 FEKHRLYL 648 (660)
Q Consensus 641 ~~~~~~~~ 648 (660)
.|+-++|+
T Consensus 409 qEI~KAYR 416 (504)
T KOG0624|consen 409 QEITKAYR 416 (504)
T ss_pred HHHHHHHH
Confidence 77777665
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=1.1e-08 Score=99.35 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD-EVTFVGVLSA 454 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 454 (660)
...|..+...|.+.|+.++|...|++.. ..+...|+.+...+...|++++|...|++..+. .|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 5667888889999999999999999876 346789999999999999999999999999985 554 5677778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEI 534 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 534 (660)
+...|++++|.+.++...+. .|+..........+...++.++|.+.+++.....+...|. ........|+...+ +
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-T 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-H
Confidence 89999999999999999863 3433222222233456788999999997643322223333 23333446666554 2
Q ss_pred HHHHHH-------hcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 535 AAQRVF-------QLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 535 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
.+..+. ++.|..+.+|..++.++...|++++|...|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 444443 44566778999999999999999999999999987654
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.12 E-value=6.6e-06 Score=82.70 Aligned_cols=470 Identities=13% Similarity=0.069 Sum_probs=221.1
Q ss_pred hHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHcc--CCCCCCcccHHHHHHHHHc
Q 048281 34 TCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNN--LSCEPNVFTYNAMISGFYS 111 (660)
Q Consensus 34 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~ 111 (660)
-|...+. |...+.+..+....+.+++ +.+-.+.+.....-.+...|+-++|...... .....+.++|+.+.-.+..
T Consensus 10 lF~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 10 LFRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 3444444 4456677777777777777 3333444544444455566888888877762 1234566778888877888
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHH
Q 048281 112 NDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKV 191 (660)
Q Consensus 112 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (660)
..++++|+++|......+.. |...|.-+.-.=++.|+++.......++.+.
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql---------------------------- 138 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL---------------------------- 138 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------------------
Confidence 88888888888887764321 3333333322222333333222222222111
Q ss_pred HccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHH------HHHccCCchhHHHHHHHHHHh
Q 048281 192 FEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEG-IWMSRFTVTGVLS------ALIMMGFFKNGRVVHGIVVKM 264 (660)
Q Consensus 192 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~ 264 (660)
.......|..+..++.-.|+...|..++++..+.. -.|+...|..... .....|..+.|.+.+......
T Consensus 139 ----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 139 ----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred ----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence 11234567777778888888888888888887654 2455555443322 233444544444443322211
Q ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCC--ChhhHHH-HHHHHHHcCChHHHH-HHHHHHhhcCCCCCHHH-H
Q 048281 265 GYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEK--DIFSWNS-IMTVHEQCGNHDGTL-RLFDRMLSAGFQPDLVT-F 339 (660)
Q Consensus 265 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~t-~ 339 (660)
+......-..-...+.+.+++++|..++..+..+ |...|+- +..++.+-.+.-+++ .+|....+. .|.... -
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~ 291 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPR 291 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccch
Confidence 1111112223334455556666666666555442 2223322 222222222222222 333333322 111100 0
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHH
Q 048281 340 STVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILG 419 (660)
Q Consensus 340 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 419 (660)
..=++......-.+....++....+.|+ +.++..+...|-.....+ +++ .++..
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~-----------p~vf~dl~SLyk~p~k~~----~le-----------~Lvt~ 345 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGV-----------PSVFKDLRSLYKDPEKVA----FLE-----------KLVTS 345 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCC-----------CchhhhhHHHHhchhHhH----HHH-----------HHHHH
Confidence 0001111111112222233333333333 223333333332221111 110 11111
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCC
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEV--TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI-EHYTCVIDMLGRAGQ 496 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 496 (660)
|...-.........+.-. --+|... |+-.+...+-..|+++.|..+++.++. ..|+. ..|..=.+.+...|.
T Consensus 346 y~~~L~~~~~f~~~D~~~--~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~ 420 (700)
T KOG1156|consen 346 YQHSLSGTGMFNFLDDGK--QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGL 420 (700)
T ss_pred HHhhcccccCCCcccccc--cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCC
Confidence 111000000000000000 0134433 333455566677777777777777653 34443 455555666777777
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc-------chHH--HHHHHHHhCCChHH
Q 048281 497 LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC-------GNYV--LMSNIYVAGGKYEE 565 (660)
Q Consensus 497 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~--~l~~~~~~~g~~~~ 565 (660)
+++|..++++... .+|..+-.--.....+.++.++|.+++.+..+-.-+-. -.|. -=+.+|.++|++.+
T Consensus 421 l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 421 LDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred hHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 7777777776543 34444433445555666777777777766655332110 1122 22455667777777
Q ss_pred HHHHHHH
Q 048281 566 VLDIRHT 572 (660)
Q Consensus 566 a~~~~~~ 572 (660)
|++=+..
T Consensus 501 ALKkfh~ 507 (700)
T KOG1156|consen 501 ALKKFHE 507 (700)
T ss_pred HHHHHhh
Confidence 7654443
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=1.1e-05 Score=82.83 Aligned_cols=430 Identities=13% Similarity=0.048 Sum_probs=265.4
Q ss_pred HHcCCChhHHHH----HHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 048281 109 FYSNDFAFKGLD----FFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQF 184 (660)
Q Consensus 109 ~~~~~~~~~a~~----~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 184 (660)
++...+.+++.- .+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ .....|..+-..|..+|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhcc
Confidence 334444555443 233344444566788899999999999999999999998876533 356778888889999999
Q ss_pred hHHHHHHHccCCC----C-CchhHHHHHHHHHh-CCChhHHHHHHHHHHHC--CC--CCChhhHHHHHHHHHcc----C-
Q 048281 185 MEEALKVFEELPL----R-DVVLWNAMVNGYAQ-IGEFHKALEVFRRMSKE--GI--WMSRFTVTGVLSALIMM----G- 249 (660)
Q Consensus 185 ~~~A~~~~~~~~~----~-~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~--~~--~p~~~t~~~ll~~~~~~----~- 249 (660)
-..|..+++.-.. | |...+-..-..|.+ -+..++++.+-.+.... +. ......|..+.-+|... .
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999877643 3 23333333344444 36777777777766551 11 12233343333333221 1
Q ss_pred ------CchhHHHHHHHHHHhCC-CCCchHHHHHHHHHHcCCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCChH
Q 048281 250 ------FFKNGRVVHGIVVKMGY-DSGVPVMNALIDMYGKGKCVGEALEIFEMME----EKDIFSWNSIMTVHEQCGNHD 318 (660)
Q Consensus 250 ------~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~ 318 (660)
...++.+.++...+.+. .|++..| +.--|+-.++++.|.+..++.. ..+...|..+.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 13345566666666552 3333333 3345666778888888877654 347789999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCH-HHHHHHHHHHhcccchHHHHHH-------HH----------HHH----HhCccCCCCCCCC
Q 048281 319 GTLRLFDRMLSAGFQPDL-VTFSTVLPACSHLAALMHGRQI-------HG----------YIV----VNGLAKNGSCKDI 376 (660)
Q Consensus 319 ~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~-------~~----------~~~----~~~~~~~~~~~~~ 376 (660)
+|+.+.+...+. .|+. .....-+..-...++.+.+... |+ ... +.|...... .+.
T Consensus 531 ~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~-q~~ 607 (799)
T KOG4162|consen 531 EALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALS-QPT 607 (799)
T ss_pred HHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcc-ccc
Confidence 999998876643 1221 0000001111112222222221 11 111 112211111 111
Q ss_pred cchhHHHHHHHHHH---hcCCHHHHHHHHhcCCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 048281 377 DDVFMNNALMDMYT---KCGSMRDAQMVFTKMSKKD------VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVT 447 (660)
Q Consensus 377 ~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 447 (660)
....++..+..... +.-..+.....+.....|+ ...|......+...++.++|...+.+....- +-....
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~ 686 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASV 686 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHH
Confidence 11233333222222 1111111112222222232 2356667778889999999998888887642 334456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHH
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAGQLNEAYE--LALAMPN--EANPVVWRTLLAA 522 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~--~~~~~~~~~l~~~ 522 (660)
|......+...|...+|.+.|..... +.|+ +....++..++.+.|+..-|.. ++..+.. +.+...|..+...
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 66666677888999999999998864 5554 5788999999999998777777 7777654 5678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
+.+.|+.+.|-..|..+.++++.+|.
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999887763
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.4e-06 Score=89.56 Aligned_cols=473 Identities=14% Similarity=0.135 Sum_probs=268.1
Q ss_pred HHHHHHHhHcCCChhHHHHHHccCC-CCCCcc-----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 048281 70 ITSLINMYSKCCQMKYALFVFNNLS-CEPNVF-----TYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKC 143 (660)
Q Consensus 70 ~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 143 (660)
+..+.+.|-+.|-...|++.|.+.. .++.++ .-..++ .|.-.-.++.+.++++.|...++.-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6677888889999999998887311 111111 112233 344444678899999999988888887777777777
Q ss_pred HhhhCCHHHHHHHHHHHHHh-----------CCCCChhHHHHHHHHhHhcCChHHHHHHHccCCC---------------
Q 048281 144 CCDVMAVLEVKKIHGLVFKL-----------GLDLDVYIGSALVNTYLKCQFMEEALKVFEELPL--------------- 197 (660)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------- 197 (660)
|...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 77666667777777665432 3456777777889999999999999887765420
Q ss_pred ----C------------CchhH------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH-------------HHHH
Q 048281 198 ----R------------DVVLW------NAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTV-------------TGVL 242 (660)
Q Consensus 198 ----~------------~~~~~------~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~-------------~~ll 242 (660)
| |.+.| ...|..|.+.-++...-.+...+..-. -+.... ..+.
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~d--C~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVD--CSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCC--CcHHHHHHHHHHHhccCChHHHH
Confidence 0 11111 123445555444433333333332211 111111 1122
Q ss_pred HHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHH----------HHHHhcCCCCh-----------
Q 048281 243 SALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEAL----------EIFEMMEEKDI----------- 301 (660)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~----------~~~~~~~~~~~----------- 301 (660)
.-+-+.+++..-...++..+..| ..+..++|+|...|..+++-.+-. .+=+-..++|+
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 22334444444444555555555 345666777766665543321110 00000000000
Q ss_pred ------------hhHHHHHHHHHHcCChH---HH--------HHHHHHHhhcCCC--CCHHHHHHHHHHHhcccchHHHH
Q 048281 302 ------------FSWNSIMTVHEQCGNHD---GT--------LRLFDRMLSAGFQ--PDLVTFSTVLPACSHLAALMHGR 356 (660)
Q Consensus 302 ------------~~~~~li~~~~~~g~~~---~a--------~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~ 356 (660)
..|-...+-+.+..+.+ ++ .++.++..+.+++ .|....+..+.++...+-+.+-.
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 00111111122222211 11 1222222222211 12222333334444444444444
Q ss_pred HHHHHHHHhCccCCCCCCCCcchhHHHHH---------------------------HHHHHhcCCHHHHHHHHhcCCC--
Q 048281 357 QIHGYIVVNGLAKNGSCKDIDDVFMNNAL---------------------------MDMYTKCGSMRDAQMVFTKMSK-- 407 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------------------i~~~~~~g~~~~A~~~~~~~~~-- 407 (660)
++++.++-.....+++ ....|.| .......+-+++|..+|++...
T Consensus 1005 ELLEKIvL~~S~Fse~------~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSEN------RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred HHHHHHhcCCcccccc------hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccH
Confidence 4444443222111100 1111111 1122223344555555554320
Q ss_pred -----------------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 048281 408 -----------------------KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQG 464 (660)
Q Consensus 408 -----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 464 (660)
.....|..+..+-.+.|...+|++-|-+. -|+..|.-++..+.+.|.+++-
T Consensus 1079 ~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1079 SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 13457888999989999998888877542 3677899999999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 048281 465 REFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 544 (660)
..++..++++ .-.|.+. +.|+-+|++.+++.+-++++. -|+.........-|...|.++.|.-+|..
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH------
Confidence 9999988874 6666654 678999999999988777664 46777778888899999999999888764
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 545 GHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 545 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
.+.|..|+..+...|.+..|...-++.
T Consensus 1220 --vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 --VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345888888888888888776655543
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=7e-08 Score=93.83 Aligned_cols=226 Identities=12% Similarity=-0.029 Sum_probs=144.5
Q ss_pred ChHHHHHHHHHHhhcC-CCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhc
Q 048281 316 NHDGTLRLFDRMLSAG-FQPDL--VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKC 392 (660)
Q Consensus 316 ~~~~a~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 392 (660)
..+.++.-+.++.... ..|+. ..|......+...|+.+.|...+...++..+.. ...|+.+...|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------~~a~~~lg~~~~~~ 111 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------ADAYNYLGIYLTQA 111 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHC
Confidence 3344445555554321 12221 234444445566666666666666666654433 67888888889999
Q ss_pred CCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048281 393 GSMRDAQMVFTKMSK--K-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLP 469 (660)
Q Consensus 393 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 469 (660)
|+++.|...|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+.
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999998888753 3 5678888888899999999999999999885 5554322222223445678999999997
Q ss_pred HhHHhcCCCCChHHHHHHHHHHhhcCCH--HHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 470 LMESRYGVVPTIEHYTCVIDMLGRAGQL--NEAYELALAMPN------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
.... ...|+... ..+...+ .|+. +++.+.+.+... +.....|..+...+...|++++|+..|+++++
T Consensus 190 ~~~~--~~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 190 QRYE--KLDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHh--hCCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7654 33444322 2333333 4444 333333332211 12345899999999999999999999999999
Q ss_pred cCCC-CcchHHHHHHHH
Q 048281 542 LEPG-HCGNYVLMSNIY 557 (660)
Q Consensus 542 ~~p~-~~~~~~~l~~~~ 557 (660)
.+|. ..+.-..++.+.
T Consensus 265 ~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 265 NNVYNFVEHRYALLELA 281 (296)
T ss_pred hCCchHHHHHHHHHHHH
Confidence 9974 444444444443
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=4.2e-09 Score=95.98 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=179.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHH-HHHhc
Q 048281 272 VMNALIDMYGKGKCVGEALEIFEMMEE--KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVL-PACSH 348 (660)
Q Consensus 272 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~ 348 (660)
--+-+..+|.+.|.+.+|++.|+.-.+ +-+.+|-.|-+.|.+..++..|+.++.+-.+. .|..+||..=+ +.+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 346789999999999999999988754 67789999999999999999999999998875 67777764322 22333
Q ss_pred ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCC
Q 048281 349 LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQ 425 (660)
Q Consensus 349 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 425 (660)
.++.++|.++++...+ .++.+..++..+|.-.++
T Consensus 303 -------------------------------------------m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~ 339 (478)
T KOG1129|consen 303 -------------------------------------------MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN 339 (478)
T ss_pred -------------------------------------------HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC
Confidence 3445555555554432 245555666777888889
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHH
Q 048281 426 GKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT--IEHYTCVIDMLGRAGQLNEAYEL 503 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 503 (660)
++-|+.+|+++.+.|+ -++..|+.+.-+|.-.+.+|-++.-|..+... .-.|+ ..+|..+.......|++.-|.+-
T Consensus 340 PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred hHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 9999999999999885 46677888888888888999998888888763 44344 36788888888889999999998
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHH
Q 048281 504 ALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVL 552 (660)
Q Consensus 504 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 552 (660)
|+-... ..+...++.|.-.-.+.|++++|..++..+....|+-.+...+
T Consensus 418 frlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 418 FRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 887554 3455788888888888999999999999998888875544333
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.8e-06 Score=78.98 Aligned_cols=384 Identities=10% Similarity=0.010 Sum_probs=243.8
Q ss_pred ChhHHHHHHHHhHhcCChHHHHHHHccCCCCC-chhHHHHHHHHHhCC-C-hhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048281 168 DVYIGSALVNTYLKCQFMEEALKVFEELPLRD-VVLWNAMVNGYAQIG-E-FHKALEVFRRMSKEGIWMSRFTVTGVLSA 244 (660)
Q Consensus 168 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~-~-~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 244 (660)
+...-...+.+|...++-+.|.....+.+..- ..--|.|+.-+.+.| + .+.++..-.-.++.-+ .+. .|.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~-----aL~-~i~~ 169 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM-----ALQ-VIEA 169 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch-----HHH-HHHH
Confidence 33444556777888889999999888887553 333344444333333 2 2222222222222110 000 0111
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcC--CCHHHHHHHHH--hcC---CCChhhHHHHHHHHHHcCCh
Q 048281 245 LIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKG--KCVGEALEIFE--MME---EKDIFSWNSIMTVHEQCGNH 317 (660)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--~~~~~A~~~~~--~~~---~~~~~~~~~li~~~~~~g~~ 317 (660)
....+ +..+..--..|.....+|.......-+.+|+.+ ++-..|...+- +.. ..|+.....+...+...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 11100 011111111222333444444444445544433 33333333332 222 24777788999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcC
Q 048281 318 DGTLRLFDRMLSAGFQPDLV----TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCG 393 (660)
Q Consensus 318 ~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 393 (660)
++|+..|++..-. .|+.. .|..+ +.+.|+.+....+...+....-.. ...|..-.......+
T Consensus 249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~t---------a~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 249 FQAEDIFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKYT---------ASHWFVHAQLLYDEK 314 (564)
T ss_pred hHHHHHHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhcc---------hhhhhhhhhhhhhhh
Confidence 9999999987754 44433 23333 356677777777766665443111 223333344455677
Q ss_pred CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048281 394 SMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPL 470 (660)
Q Consensus 394 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 470 (660)
+++.|+.+-++..+ +++..|-.=...+...|++++|.-.|+..+... +-+-.+|..|+.+|...|.+.+|.-.-+.
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 88888888887663 345555555677889999999999999988742 34678999999999999999999988888
Q ss_pred hHHhcCCCCChHHHHHHH-HHHhh-cCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 471 MESRYGVVPTIEHYTCVI-DMLGR-AGQLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
..+ -++.+..+...+. ..+.- ..--|+|.+++++... +|+ ....+.+...|...|.++.++.++++.+...|+.
T Consensus 394 ~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 394 TIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 776 4555666665553 33322 2234789999988554 455 4577888889999999999999999999988865
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 547 CGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+..|++++...+.+.+|...|....+.
T Consensus 472 -~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 472 -NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 78899999999999999999999987763
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=3.3e-06 Score=86.93 Aligned_cols=428 Identities=13% Similarity=0.083 Sum_probs=208.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC--
Q 048281 106 ISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQ-- 183 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 183 (660)
...+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.++ .|..-|..|..+..-..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 35567889999999999775443 443345566677888899999999999999998863 24445555555552222
Q ss_pred ---ChHHHHHHHccCCCC--CchhHHHHHHHHHhCCChh-HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHH
Q 048281 184 ---FMEEALKVFEELPLR--DVVLWNAMVNGYAQIGEFH-KALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVV 257 (660)
Q Consensus 184 ---~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 257 (660)
..+....+++++... ...+...+.-.+.....+. .+...+..+...|+++ +|+.+-..|.......-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 355556666655432 1122222222222212222 3444555556666532 233333333333333323333
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC-CCh--hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCC
Q 048281 258 HGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE-KDI--FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQP 334 (660)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 334 (660)
+.......- ..+.+.... ..-.+ |.. .++.-+...|...|++++|+.++++.++. .|
T Consensus 166 ~~~~~~~l~---------------~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tP 225 (517)
T PF12569_consen 166 VEEYVNSLE---------------SNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TP 225 (517)
T ss_pred HHHHHHhhc---------------ccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence 322221100 000000000 00001 111 12344455555666666666666666554 44
Q ss_pred CH-HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH---
Q 048281 335 DL-VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDV--- 410 (660)
Q Consensus 335 ~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 410 (660)
+. ..|..-.+.+-+.|++.+|...++.....+... ..+-+-.+..+.++|++++|.+++....+++.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D---------RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD---------RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh---------HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 43 344444555666666666666666665554433 45555555566666666666666665554321
Q ss_pred -------hHH--HHHHHHHHhcCChHHHHHHHHHHHHc--CC-------------CCCHHHHHHHHHHHhccCC------
Q 048281 411 -------ASW--NIMILGYGMDGQGKEALDMFSCMCEA--KL-------------KPDEVTFVGVLSACSHSGF------ 460 (660)
Q Consensus 411 -------~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~-------------~p~~~~~~~ll~~~~~~g~------ 460 (660)
..| .....+|.+.|++..|+..|....+. .+ +.+..+|..++...-+...
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~r 376 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRR 376 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHH
Confidence 122 22345566666666666655544432 01 1122233333332211111
Q ss_pred -HHHHHHHHHHhHHhcCCCC-----------ChHHHHHHHHHH---hhcCCHHHHHHHHHh-----------C----CC-
Q 048281 461 -LSQGREFLPLMESRYGVVP-----------TIEHYTCVIDML---GRAGQLNEAYELALA-----------M----PN- 509 (660)
Q Consensus 461 -~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~- 509 (660)
...|.+++-.+-....... +..--..+..-. .+...-+++...-.+ . +.
T Consensus 377 aa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (517)
T PF12569_consen 377 AAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKK 456 (517)
T ss_pred HHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCc
Confidence 1223333333322100000 000000111000 111111111111100 0 00
Q ss_pred -CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 510 -EANPVVWRTLLAASRLHG-NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 510 -~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
.+|+. ..-+.+.. =.++|.+.++-+.+..|++..+|..--.+|.+.|++--|++.+.+
T Consensus 457 ~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 457 KDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 12221 11122223 367899999999999999999999999999999999999887764
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=6.2e-06 Score=82.89 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=85.3
Q ss_pred CCChHH--HHHHHHHHhhcCCHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 478 VPTIEH--YTCVIDMLGRAGQLNEAYELALAMPN-EANP-VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 478 ~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
+|.... +..++..|-+.|+++.|...++.... .|.. ..|..-.+.+...|+.++|-..++++.+++..|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 444443 45678888999999999999998765 3443 3566667889999999999999999999976664333356
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCcc-----CCcEEEEEEC
Q 048281 554 SNIYVAGGKYEEVLDIRHTMRQQNVRK-----NPGCSWIELK 590 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~ 590 (660)
+.-..++++.++|.++..+..+.|... +..|+|..+.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 666778999999999999997766421 2357777654
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=3.3e-06 Score=85.51 Aligned_cols=262 Identities=13% Similarity=0.140 Sum_probs=172.5
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCChh--hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHH
Q 048281 277 IDMYGKGKCVGEALEIFEMMEEKDIF--SWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMH 354 (660)
Q Consensus 277 i~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (660)
+.+......|.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.- .+.-.|..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44455667788888888877766544 36667778888888888888876532 23455667778888887
Q ss_pred HHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 048281 355 GRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFS 434 (660)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 434 (660)
|.++-... .|.+.. ...|-+-..-.-+.|++.+|+++|-.+..|+. -|..|-++|..+..+++..
T Consensus 810 a~kla~e~--~~~e~t--------~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEAT--------ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHh--cCchhH--------HHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHH
Confidence 77765443 234443 55666666667778888888888888877764 3667888888888887776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC----
Q 048281 435 CMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE---- 510 (660)
Q Consensus 435 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 510 (660)
+-... --..|-..+..-+...|+++.|..-|-+... |.+-+++|-..+-|++|.++-+.-...
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k 941 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEK 941 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHH
Confidence 54321 1234556667778888999999887766643 677788899999999998887653211
Q ss_pred CCHHHHHH------HHHHHHHcCChH-------------HHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 048281 511 ANPVVWRT------LLAASRLHGNTD-------------LAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 511 ~~~~~~~~------l~~~~~~~g~~~-------------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 571 (660)
.-...|.. ....+-++|-.+ -|..+.+-..+ ..-++.+..++.-+-..|++++|.+-+-
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhH
Confidence 11122221 122233444443 34333333222 2345677888888999999999988877
Q ss_pred HHHhCC
Q 048281 572 TMRQQN 577 (660)
Q Consensus 572 ~~~~~~ 577 (660)
+..+.+
T Consensus 1020 eaikln 1025 (1636)
T KOG3616|consen 1020 EAIKLN 1025 (1636)
T ss_pred HHhhcc
Confidence 776654
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=1.2e-07 Score=96.17 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=116.4
Q ss_pred ccHHHHHHHHhhhCCHHHHHHHHHHHHHh-----C-CCCChh-HHHHHHHHhHhcCChHHHHHHHccCCC-------C--
Q 048281 135 YTFPCLIKCCCDVMAVLEVKKIHGLVFKL-----G-LDLDVY-IGSALVNTYLKCQFMEEALKVFEELPL-------R-- 198 (660)
Q Consensus 135 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 198 (660)
.+...+...|...|+++.|..++++.++. | ..|... ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666777777777777777666554 1 012211 122244445555555555555544321 0
Q ss_pred --CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCC-CCCch-HHH
Q 048281 199 --DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGY-DSGVP-VMN 274 (660)
Q Consensus 199 --~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~ 274 (660)
-..+++.|...|.+.|++++|...++...+- +.. ..|. .|.+. .++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLGASHPEVAAQLS 329 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhccChHHHHHHHH
Confidence 1223444444455555555544444443220 000 0011 11111 234
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcC-------CC-C---hhhHHHHHHHHHHcCChHHHHHHHHHHhhc----C--CCCC-H
Q 048281 275 ALIDMYGKGKCVGEALEIFEMME-------EK-D---IFSWNSIMTVHEQCGNHDGTLRLFDRMLSA----G--FQPD-L 336 (660)
Q Consensus 275 ~li~~~~~~~~~~~A~~~~~~~~-------~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~p~-~ 336 (660)
.+...++..+++++|..+++... .+ + .-+++.|...|...|++++|.+++++.... + ..+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 44555555566666555554432 11 2 135777777777888888887777776542 1 1222 3
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048281 337 VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFT 403 (660)
Q Consensus 337 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 403 (660)
..++.+-..|.+.+....+.++|....... ..-|...+ ....+|..|...|.+.|+++.|.++.+
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~-~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHP-DVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCC-chHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 456667777777777777777776554332 11110000 013445555555555555555555443
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=9.4e-06 Score=80.74 Aligned_cols=408 Identities=12% Similarity=0.103 Sum_probs=219.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHH--HHHHhH--h
Q 048281 106 ISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSA--LVNTYL--K 181 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 181 (660)
+.-+.+++++++|.....++...+ +-|...+..-+-+..+.+.++.|..+.+. .+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 455667788888888888888754 33455677777778888888888755432 211 112222 234444 6
Q ss_pred cCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCchhHHHHHHH
Q 048281 182 CQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRF-TVTGVLSALIMMGFFKNGRVVHGI 260 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 260 (660)
.+..++|...++...+.+..+...-...+.+.|++++|+++|+.+.+.+...-.. .-..++.+-... ....
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l--------~~~~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL--------QVQL 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh--------hHHH
Confidence 7888888888885555555566666677888888888888888887765422111 111122111110 0001
Q ss_pred HHHhCCCCCchHHHHH---HHHHHcCCCHHHHHHHHHhcC--------CCCh----------hhHHHHHHHHHHcCChHH
Q 048281 261 VVKMGYDSGVPVMNAL---IDMYGKGKCVGEALEIFEMME--------EKDI----------FSWNSIMTVHEQCGNHDG 319 (660)
Q Consensus 261 ~~~~g~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~g~~~~ 319 (660)
+......| ..+|..+ .-.+...|++.+|+++++... +.|. ..---|.-.+...|+..+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 12222222 2223222 234455677777777766651 1111 011223344555566666
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHH-HH
Q 048281 320 TLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMR-DA 398 (660)
Q Consensus 320 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A 398 (660)
|..++...++.. .+|....... -|.|+.+-....-++ .+
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~---------------------------------------~NNLva~~~d~~~~d~~~ 282 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVA---------------------------------------VNNLVALSKDQNYFDGDL 282 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHH---------------------------------------hcchhhhccccccCchHH
Confidence 666666665543 3333222111 111111111000000 11
Q ss_pred HHHHhcC------------C--CCCHhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccCCH
Q 048281 399 QMVFTKM------------S--KKDVASWN-IMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS--HSGFL 461 (660)
Q Consensus 399 ~~~~~~~------------~--~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g~~ 461 (660)
+..++.. . +......| .++..|. +..+.+.++..... +..|. ..+..++..+. +...+
T Consensus 283 l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 283 LKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKH 357 (652)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHH
Confidence 1111111 1 11112222 2333332 22233333332221 22333 34445554433 22357
Q ss_pred HHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH--------hCCC-CCCHHHHHHHHHHHHHcCChHH
Q 048281 462 SQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAGQLNEAYELAL--------AMPN-EANPVVWRTLLAASRLHGNTDL 531 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~-~~~~~~~~~l~~~~~~~g~~~~ 531 (660)
.++.+++....+ +.+-. ..+.-.++......|+++.|.+++. .+.. ...+.+..++..-+.+.++.+.
T Consensus 358 ~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 358 KKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 788888888765 33333 5666777888899999999999998 4443 3455677777888888888888
Q ss_pred HHHHHHHHHhc----CCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 532 AEIAAQRVFQL----EPGH---CGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 532 A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|..++..++.- .+.. -..+..++..-.+.|+-++|..+++++.+.
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 98888888762 3332 123333444445679999999999998774
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6e-06 Score=81.30 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHH
Q 048281 488 IDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 488 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 565 (660)
...+.+.|++..|++.|.++.. +.|...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777766666443 34556666666666777777777777777777776666666666666666666776
Q ss_pred HHHHHHHHHhC
Q 048281 566 VLDIRHTMRQQ 576 (660)
Q Consensus 566 a~~~~~~~~~~ 576 (660)
|.+.|++..+.
T Consensus 445 Aleay~eale~ 455 (539)
T KOG0548|consen 445 ALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHhc
Confidence 66666665543
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.1e-06 Score=90.39 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=166.8
Q ss_pred HHHHcCCCHHHHHHHHHhcCCC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh----c--
Q 048281 278 DMYGKGKCVGEALEIFEMMEEK--DI-FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACS----H-- 348 (660)
Q Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 348 (660)
..+...|++++|++.++.-... |. .........+.+.|+.++|..+|..+.+. .|+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 3445567777777777664432 32 34455666677777777777777777766 355555554444443 1
Q ss_pred ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHH-HHHHHHhcCCCCCH-hHHHHHHHHHHhcCCh
Q 048281 349 LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMR-DAQMVFTKMSKKDV-ASWNIMILGYGMDGQG 426 (660)
Q Consensus 349 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 426 (660)
..+.+....+++.+...-+... . ...+.-.+.....+. .+...+..+..+++ .+++.+-..|......
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~--------~--~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSD--------A--PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred cccHHHHHHHHHHHHHhCcccc--------c--hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH
Confidence 1234555566665544432221 0 000111111111111 12222223333333 3455555555544444
Q ss_pred HHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 427 KEALDMFSCMCEA----K----------LKPDE--VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 427 ~~A~~~~~~m~~~----g----------~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
.-...++...... + -.|.. .++..+...|...|++++|+++.+.++. .-+..+..|..-.+.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 4444444444322 1 12333 2445556678889999999999998886 233336788888899
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC-------cchHHHHHHHHHh
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP--GH-------CGNYVLMSNIYVA 559 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~ 559 (660)
|-+.|++++|.+.++.... ..|..+-+-....+.+.|+.++|++++......+- .. .......+.+|.+
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887654 45666777778888899999999998888766542 11 0122456788889
Q ss_pred CCChHHHHHHHHHHH
Q 048281 560 GGKYEEVLDIRHTMR 574 (660)
Q Consensus 560 ~g~~~~a~~~~~~~~ 574 (660)
.|++..|++.+..+.
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999998888776653
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=3.7e-08 Score=97.24 Aligned_cols=219 Identities=14% Similarity=0.080 Sum_probs=175.4
Q ss_pred HhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHh
Q 048281 346 CSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGM 422 (660)
Q Consensus 346 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 422 (660)
+.+.|++..|.-.|+..++..+.. ...|.-|.......++-..|+..+.+..+ .|....-.|.-.|..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~h---------aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQH---------AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHH---------HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 356788888888899988888777 88999999999999999999999888763 366778888888999
Q ss_pred cCChHHHHHHHHHHHHcCCC-----C---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 048281 423 DGQGKEALDMFSCMCEAKLK-----P---DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA 494 (660)
Q Consensus 423 ~g~~~~A~~~~~~m~~~g~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 494 (660)
.|.-.+|+..|+.-+....+ + +...-.. ..+.....+....++|-++....+..+|..+...|.-.|--.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999887654210 0 1000000 122223334556666766666557668888999999999999
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 495 GQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 495 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
|.+++|.+-|+.+.. +.|...||-|...+....+.++|+..|++++++.|.-..+...|+..|...|.++||.+.|-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999998654 456789999999999999999999999999999999999999999999999999999999887
Q ss_pred HHh
Q 048281 573 MRQ 575 (660)
Q Consensus 573 ~~~ 575 (660)
...
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 644
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.4e-06 Score=78.96 Aligned_cols=410 Identities=13% Similarity=0.065 Sum_probs=219.1
Q ss_pred cHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCC--CCchhHHH-HHHHHHh
Q 048281 136 TFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPL--RDVVLWNA-MVNGYAQ 212 (660)
Q Consensus 136 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~ 212 (660)
-+..++..+.+..++..|++++..-.+... .+....+.|..+|-...++..|-..++++.. |...-|.. -...+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 344555555555666666666555444321 1344445555666666666666666665542 22222221 1234455
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHH--HHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHH
Q 048281 213 IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSA--LIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEAL 290 (660)
Q Consensus 213 ~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~ 290 (660)
.+.+.+|+.+...|... |+...-..-+.+ .-+.+++..+..+.++.... .+..+.+...-...+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 66777777777666432 221111111222 22445666666665554322 23334444444556778888888
Q ss_pred HHHHhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHhcccchHHHHHHHHHHHHh
Q 048281 291 EIFEMMEE----KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVT-FSTVLPACSHLAALMHGRQIHGYIVVN 365 (660)
Q Consensus 291 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 365 (660)
+-|+...+ ....+||..+.. .+.|+++.|++...++.++|++..... ......+. ....+.....++...+
T Consensus 165 qkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh~Sal-- 240 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLHQSAL-- 240 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHHHHHHH--
Confidence 88887765 244566655544 456888888888888888875422110 00000000 0000000111111110
Q ss_pred CccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048281 366 GLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK-----DVASWNIMILGYGMDGQGKEALDMFSCMCEAK 440 (660)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (660)
+..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- -.+++.+..+-+.-+....
T Consensus 241 -------------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 241 -------------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -------------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 445566666778899999999999999843 667766553322 2355666666666666653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHHHHHH
Q 048281 441 LKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVV-PTIEHYTCVIDMLG-RAGQLNEAYELALAMPNEANPVVWRT 518 (660)
Q Consensus 441 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~ 518 (660)
. -...||..++-.||+..-++.|-.++.+-... -+. .+...|+ |++++. ..-..++|.+-++.+...-....-..
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRkl 383 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKL 383 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34579999999999998888888887764321 111 2233333 333333 34456777666655432100111111
Q ss_pred HHHHH-HHcCCh----HHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 519 LLAAS-RLHGNT----DLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 519 l~~~~-~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.+..- .++.+- ..|++-+++.+++- -++....+++|.+..++..+.++|+.-.+.
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111 111121 22333344444431 134567788899999999999999876654
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=3.9e-07 Score=79.74 Aligned_cols=196 Identities=12% Similarity=-0.013 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKK---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
..+...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..... +-+....|....-+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 445667888999999999999999998743 45689999999999999999999999999853 33557788888888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
|..|.+++|.+.|+.+.....+.--..+|..+.-+-.+.|+.+.|...|++... +..+.+...+.......|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999999998644444567999999999999999999999998654 445678888999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 534 IAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..+++.....+...+..-..+++-.+.|+.+.+.++=..+.+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999887777777787888888899999988887776654
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=1.2e-07 Score=90.79 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH---- 457 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---- 457 (660)
......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++..
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhC
Confidence 333445667788888888888765 45666777888899999999999999999874 334 445555555433
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh-HHHHH
Q 048281 458 SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNT-DLAEI 534 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~ 534 (660)
...+.+|.-+|+++.. ...+++.+.+.+..+....|++++|.+++.+... +.++.++..++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 2368899999999876 4567888888888899999999999999887543 34566777777777888877 66778
Q ss_pred HHHHHHhcCCCCc
Q 048281 535 AAQRVFQLEPGHC 547 (660)
Q Consensus 535 ~~~~~~~~~p~~~ 547 (660)
.+.++....|+++
T Consensus 258 ~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 258 YLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHCHHHTTTSH
T ss_pred HHHHHHHhCCCCh
Confidence 8888887888765
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.4e-05 Score=81.15 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=25.7
Q ss_pred HcCCChhHHHHHHccCCCCCCc-ccHHHHHHHHHcCCChhHHHHHHHH
Q 048281 78 SKCCQMKYALFVFNNLSCEPNV-FTYNAMISGFYSNDFAFKGLDFFNH 124 (660)
Q Consensus 78 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 124 (660)
...|+++.|..+++..-..|+. ..|-.+-......|+.--|.++|..
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3457777777777632233443 3465555555555555555554443
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.4e-05 Score=82.36 Aligned_cols=402 Identities=14% Similarity=0.095 Sum_probs=238.3
Q ss_pred CCChhHHHHHHH--HhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHC-C--------CCC
Q 048281 64 IDSPLSITSLIN--MYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQL-G--------VLP 132 (660)
Q Consensus 64 ~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p 132 (660)
.-|..+..++++ .|.--|+.+.|.+-.+ .+ .+-..|..|.+.+.+.++.+-|.-++-.|... | -.|
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~-~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQ-FI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHH-HH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 346778888875 6778899999988776 33 24457999999999999998888887777542 1 123
Q ss_pred CcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC-CchhHHHHHHHHH
Q 048281 133 DKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR-DVVLWNAMVNGYA 211 (660)
Q Consensus 133 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~ 211 (660)
+ .+=.-+.-.....|.+++|+.+|++..+. ..|=..|-..|.+++|.++-+.-.+- =..+|......+-
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 2 33233334456789999999999998874 33446677789999999886543321 1235555566666
Q ss_pred hCCChhHHHHHHHHH----------HHCCC---------CCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchH
Q 048281 212 QIGEFHKALEVFRRM----------SKEGI---------WMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPV 272 (660)
Q Consensus 212 ~~~~~~~A~~~~~~m----------~~~~~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 272 (660)
..++.+.|++.|++. ..... .-|...|.-...-+-..|+.+.|..+|....+
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 678888888887753 21111 12333333344444555666666666655443
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccc--
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLA-- 350 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-- 350 (660)
|-+++...|-.|+.++|-++-++- .|..+...+.+.|-..|++.+|...|.+.. +|...|+.|-..+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMK 1009 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHH
Confidence 344555566667777777766542 456677778888888888888888887764 2334443332221
Q ss_pred -------------chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----------
Q 048281 351 -------------ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---------- 407 (660)
Q Consensus 351 -------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 407 (660)
+.-.|..+|+.. | .-....+..|-+.|.+.+|+++--+-.+
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~---g-------------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEEL---G-------------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHc---c-------------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 222222232221 1 1122344567777777777765332221
Q ss_pred ----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---
Q 048281 408 ----KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT--- 480 (660)
Q Consensus 408 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 480 (660)
.|+...+.-..-++.+.++++|..++-..++ |...+..|... ++.-..++-+.|.-...-.|+
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~~~~e~~ 1143 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDDMPNEQE 1143 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCCCccHHH
Confidence 2555566666667778888888887766554 23333334332 222223333333211112222
Q ss_pred -hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 048281 481 -IEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 481 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 530 (660)
..+...+.+.+.++|.+..|-+-|.+...+ ...++++.+.|+.+
T Consensus 1144 R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1144 RKQVLEQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcc
Confidence 245666777778888887777777665432 12244455555544
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=4e-05 Score=80.77 Aligned_cols=433 Identities=12% Similarity=0.116 Sum_probs=231.8
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCCh
Q 048281 36 IASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFA 115 (660)
Q Consensus 36 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 115 (660)
..|...+-+.++++.-...++..+..|. -++.++|+|...|...++-++ ..+. ..+ .-=+..+.-||...++
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE--~fLk-eN~----yYDs~vVGkYCEKRDP 913 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPE--RFLK-ENP----YYDSKVVGKYCEKRDP 913 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChH--Hhcc-cCC----cchhhHHhhhhcccCC
Confidence 4466667777888777778888888885 488999999999987765443 2222 111 1112223344444444
Q ss_pred hHHHHHHHHHHHC----CCCCCcccHHHHHHHHhhhCCHHHH-----------HHHHHHHHHhCCC--CChhHHHHHHHH
Q 048281 116 FKGLDFFNHMRQL----GVLPDKYTFPCLIKCCCDVMAVLEV-----------KKIHGLVFKLGLD--LDVYIGSALVNT 178 (660)
Q Consensus 116 ~~a~~~~~~m~~~----~~~p~~~t~~~ll~~~~~~~~~~~a-----------~~~~~~~~~~g~~--~~~~~~~~li~~ 178 (660)
..|.-.|++=.-. .+.-....|....+.+.+..+.+.- +++.++.+..+++ .|+.--+.-+.+
T Consensus 914 ~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkA 993 (1666)
T KOG0985|consen 914 HLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKA 993 (1666)
T ss_pred ceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHH
Confidence 3333222211000 0111122233333333333333221 2344444444432 344455556667
Q ss_pred hHhcCChHHHHHHHccCC-CCCc-----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 048281 179 YLKCQFMEEALKVFEELP-LRDV-----VLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFK 252 (660)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 252 (660)
+...+-..+-.++++++. ++++ ..-|.||-...+ -+..++.+..+++-.-.. | .+...+...+-++
T Consensus 994 fMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~------~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 994 FMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-P------DIAEIAIENQLYE 1065 (1666)
T ss_pred HHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHH
Confidence 767777777777777664 2222 222333333222 344455555555533211 1 1233445555566
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 048281 253 NGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGF 332 (660)
Q Consensus 253 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 332 (660)
+|..+|+.. ..+....+.|+. .-+.+|.|.++-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 666666543 223333444443 235567777776666554 46788888888888888887776542
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh-
Q 048281 333 QPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVA- 411 (660)
Q Consensus 333 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 411 (660)
-|...|..++..+.+.|.++.-.+.+....+..-++. +-+.|+-+|++.+++.+-+++.. -||+.
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~----------id~eLi~AyAkt~rl~elE~fi~---gpN~A~ 1196 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY----------IDSELIFAYAKTNRLTELEEFIA---GPNVAN 1196 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc----------chHHHHHHHHHhchHHHHHHHhc---CCCchh
Confidence 3666788888888888888888877777666654443 45678888888888777666543 23333
Q ss_pred -------------------------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048281 412 -------------------------SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 412 -------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
.|..|...+...|++..|...-++. .+..||..+-.+|...+.+.-|
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-- 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-- 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH--
Confidence 3444444444444444444333322 2334555555555554443332
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 048281 467 FLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRL 525 (660)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 525 (660)
+|.. .++.....-..-|+.-|...|.+++-..+++.... +.....|+-|.-.|.+
T Consensus 1269 ---QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1269 ---QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ---HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 1211 12233344455666666666666666666665332 3344445555544444
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.4e-06 Score=81.60 Aligned_cols=167 Identities=16% Similarity=0.018 Sum_probs=114.7
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHH
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV-TFVGVLSACSHSGFLSQ 463 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 463 (660)
+..+|.+.++.+.|...|.+...+... -....+....++++.......- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 455677778888888888875421110 1122233444555555544443 233331 12222456778899999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 464 GREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
|...|.+++++ .+-|...|....-+|.+.|.+..|+.=.+...+ ++....|.-=+.++....+++.|.+.|.+.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999984 466778999999999999999999887766543 33344566666677778899999999999999
Q ss_pred cCCCCcchHHHHHHHHHhC
Q 048281 542 LEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 542 ~~p~~~~~~~~l~~~~~~~ 560 (660)
.+|.+.+....+.+++..+
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999877776666666543
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7.1e-05 Score=77.31 Aligned_cols=471 Identities=12% Similarity=0.069 Sum_probs=245.1
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCC-CcccHHHHHHHHHcCCChhHHHH
Q 048281 42 CAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEP-NVFTYNAMISGFYSNDFAFKGLD 120 (660)
Q Consensus 42 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~ 120 (660)
...+|.+++|..+|.+-.+.. .|=..|...|.+++|.++-+ .-.+. =-.||.....-+-..++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE-~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAE-TKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHh-hccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 345677777777777766643 34456777888898888877 32221 12355555566666677777777
Q ss_pred HHHHHH----------HCC---------CCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh
Q 048281 121 FFNHMR----------QLG---------VLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLK 181 (660)
Q Consensus 121 ~~~~m~----------~~~---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 181 (660)
.|++.. ... -.-|...|..--...-..|+.+.|..+|....+ |-+++...|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 776531 110 012334444444455556666666666665443 3455666666
Q ss_pred cCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-----------
Q 048281 182 CQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGF----------- 250 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~----------- 250 (660)
.|+.++|-++-++-. |..+.-.|.+.|-..|++.+|+.+|.+.. +|...|+.|-..+-
T Consensus 951 qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred ccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 777777777655433 55667778888888888888888887764 24444444433221
Q ss_pred ----chhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--------------CChhhHHHHHHHHH
Q 048281 251 ----FKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--------------KDIFSWNSIMTVHE 312 (660)
Q Consensus 251 ----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~ 312 (660)
.-.|-++|++ .|. -..--+..|-+.|.+.+|+++-=+-.+ .|+...+.-...++
T Consensus 1020 ~~~d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1112222221 111 111223455666666666554222111 24445555556666
Q ss_pred HcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhc
Q 048281 313 QCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKC 392 (660)
Q Consensus 313 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 392 (660)
...++++|..++-...+ |...+..|...|- .-..++-+.| .+..++..+...-..+...+.+.+.++
T Consensus 1092 ~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~m---Tp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELM---TPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhc---CcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 67777777766654432 3334444433321 1112221211 111111111111245667778888888
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH-------------HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 048281 393 GSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDM-------------FSCMCEAKLKPDEVTFVGVLSACSHSG 459 (660)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~ll~~~~~~g 459 (660)
|.+..|-+-|.+.-.+ -.-++++.+.|+.++..-. -.-++...+..|+.+...++.-|.+..
T Consensus 1159 G~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgq 1233 (1416)
T KOG3617|consen 1159 GAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQ 1233 (1416)
T ss_pred cchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcch
Confidence 8888887777654321 1234555556654432100 011222345556666666665555554
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHH----------HHHHH-cC
Q 048281 460 FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANP-VVWRTLL----------AASRL-HG 527 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~----------~~~~~-~g 527 (660)
.++.--.+|..... ..+..|..+-. ..|-+++|.+-+.+...+.+. ..++.|- ..... ..
T Consensus 1234 afd~LanFY~~cAq-----iEiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~e 1305 (1416)
T KOG3617|consen 1234 AFDHLANFYKSCAQ-----IEIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKE 1305 (1416)
T ss_pred hHHHHHHHHHHHHH-----hhHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444443322 11112221111 123445555555554432222 1222222 21111 11
Q ss_pred ChHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 528 NTDLAEIAAQRVFQLEPGHC------GNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
|....+.-.+.+++ +|..+ ..|..|+..+....+|.+|.+.+..|.++-
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 34444444444444 34332 467788999999999999999999998763
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=1.8e-05 Score=83.29 Aligned_cols=529 Identities=9% Similarity=-0.052 Sum_probs=255.7
Q ss_pred chhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCC--CCccc--HHHHH
Q 048281 31 TLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCE--PNVFT--YNAMI 106 (660)
Q Consensus 31 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~li 106 (660)
-...|..|-..|...-+...|...|....+... .+...+....+.|++..+++.|..+.-..... .-... |-...
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 355677777777777788888888888777652 35677778888888888888887764311110 01111 22222
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHhHhcCCh
Q 048281 107 SGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY-IGSALVNTYLKCQFM 185 (660)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~ 185 (660)
-.|.+.++...|+.-|+...+..+. |...|..+..+|.+.|.+..|.++|...... .|+.. .--...-+-+..|++
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhH
Confidence 2334445555555555555443222 4445555555555555555555555544432 22211 111111122344555
Q ss_pred HHHHHHHccCCCC----------CchhHHHHHHHHHhCCChhHHHHHHHHHH-------HCC------------------
Q 048281 186 EEALKVFEELPLR----------DVVLWNAMVNGYAQIGEFHKALEVFRRMS-------KEG------------------ 230 (660)
Q Consensus 186 ~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~-------~~~------------------ 230 (660)
.+|+..+..+... -..++-.+...+...|-...|.+.+++-+ ...
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 5555544433210 01111111111112222222222222111 111
Q ss_pred --CCCC---hhhHHHHHHHHHccCCchhHH----HHHHHHHHhCCCCCchHHHHHHHHHHc----C----CCHHHHHHHH
Q 048281 231 --IWMS---RFTVTGVLSALIMMGFFKNGR----VVHGIVVKMGYDSGVPVMNALIDMYGK----G----KCVGEALEIF 293 (660)
Q Consensus 231 --~~p~---~~t~~~ll~~~~~~~~~~~a~----~~~~~~~~~g~~~~~~~~~~li~~~~~----~----~~~~~A~~~~ 293 (660)
+.|| ......+..-.-..+....-. ..-.......+..+...|..|+..|.+ + .+...|+..+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 1122 222222222122222221000 000001111112223333333333322 1 1223566666
Q ss_pred HhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCC
Q 048281 294 EMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKN 370 (660)
Q Consensus 294 ~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 370 (660)
....+ .+...||.|.-. ...|++.-+.-.|-+-.... +-...+|..+--.+....+++.|...+.......+..
T Consensus 807 KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n- 883 (1238)
T KOG1127|consen 807 KKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN- 883 (1238)
T ss_pred HHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchh-
Confidence 55433 466677776655 44456665555555444331 2234456655556667778888888777766554433
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 048281 371 GSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--------KKDVASWNIMILGYGMDGQGKEALDMFSCMCEA--- 439 (660)
Q Consensus 371 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 439 (660)
...|--........|+.-++..+|..-. .++..-|-+-......+|+.++-+...+++...
T Consensus 884 --------l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 884 --------LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred --------hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 3333333333345677777777776521 134444544444555666666555444443321
Q ss_pred ------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHhhcCCHHHHHHHHHhCCC
Q 048281 440 ------KLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYT----CVIDMLGRAGQLNEAYELALAMPN 509 (660)
Q Consensus 440 ------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 509 (660)
|.+.+...|........+.+.+..|.+...+.+.-...+.+...|+ .+.+.+...|.++.|..-+.....
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 2233445666666666666666666665555443222233444444 344556667777777666655444
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 510 EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC---GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+.+..+-.+-+.. .-.|+++++.+.|++++.+.-++. .....++......+.-+.|...+-+...
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 4444444333333 335788888888888888643332 2334455555566777777776665544
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.80 E-value=5e-05 Score=87.28 Aligned_cols=263 Identities=15% Similarity=0.052 Sum_probs=134.6
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH
Q 048281 311 HEQCGNHDGTLRLFDRMLSAGFQPDL----VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM 386 (660)
Q Consensus 311 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 386 (660)
+...|++++|...+++..+.-...+. .....+...+...|+++.|...+............ .......+..+.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la 538 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQS 538 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHH
Confidence 33455555555555554432111111 12222333344455666655555554432111100 000022334455
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HHHHHHH
Q 048281 387 DMYTKCGSMRDAQMVFTKMSK-------K----DVASWNIMILGYGMDGQGKEALDMFSCMCEAK--LKPD--EVTFVGV 451 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~l 451 (660)
..+...|+++.|...+++... + ....+..+...+...|++++|...+++..... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 556666776666666554321 0 11223344455566677777777777665421 1121 2233334
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHH
Q 048281 452 LSACSHSGFLSQGREFLPLMESRYGVVPTIEHY-----TCVIDMLGRAGQLNEAYELALAMPNE--ANP----VVWRTLL 520 (660)
Q Consensus 452 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~ 520 (660)
.......|+.+.|.+.+..+..-.........+ ...+..+...|+.+.|...+...... ... ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 445667778888877777764411111111111 11123345577888888877664431 111 1134566
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 521 AASRLHGNTDLAEIAAQRVFQLEP------GHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.++...|+.++|...+++++.... ....++..++.++.+.|+.++|...+.+..+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677778888888888888776411 12235666777788888888888888877654
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=8.9e-05 Score=78.39 Aligned_cols=505 Identities=14% Similarity=0.047 Sum_probs=246.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCC-hhHHHHHHHHhHcCCChhHHHHHHcc--CCCCCCcccHHHHHHHHHcCCC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDS-PLSITSLINMYSKCCQMKYALFVFNN--LSCEPNVFTYNAMISGFYSNDF 114 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~li~~~~~~~~ 114 (660)
.+..|.+.. .. ..++..+....+.++ ...|..|-..|+..-+...|.+.|+. .....+...+......|++..+
T Consensus 465 ~a~~~~rK~-~~--~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 465 VALGCMRKN-SA--LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEEST 541 (1238)
T ss_pred HHHHHhhhh-HH--HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence 344444443 22 333333333334343 35677777888877777888888874 2344556677778888888888
Q ss_pred hhHHHHHHHHHHHCCC-CCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHc
Q 048281 115 AFKGLDFFNHMRQLGV-LPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFE 193 (660)
Q Consensus 115 ~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 193 (660)
++.|..+.-..-+... ..-...|..+--.+.+.++...+..-|+...+..+ -|...|..|..+|.++|++..|.++|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 8888777333222110 00111222233335566777777777777766432 256778888888888888888888887
Q ss_pred cCCCCCchhHH-H--HHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHHccCCchhHHHHHHHHHH-
Q 048281 194 ELPLRDVVLWN-A--MVNGYAQIGEFHKALEVFRRMSKE------GIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVK- 263 (660)
Q Consensus 194 ~~~~~~~~~~~-~--li~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 263 (660)
+...-++..+- . ....-+..|.+.+|+..+...... +..--..++.-+...+...|-...+..+++.-++
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 66543332221 1 112334567777777777766432 1111112233333333333333333333332221
Q ss_pred ------hCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhh--HHHHHHH-HHHcCCh---H---HHHHHHHHHh
Q 048281 264 ------MGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFS--WNSIMTV-HEQCGNH---D---GTLRLFDRML 328 (660)
Q Consensus 264 ------~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~-~~~~g~~---~---~a~~~~~~m~ 328 (660)
.....+...|-.+ ..|..+|-... |+.+. +...+.. .-..+.. + -+.+.+-.-.
T Consensus 701 f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 1111112222111 12333333333 33221 1111111 1111111 1 0111111111
Q ss_pred hcCCCCCHHHHHHHHHHHhc----cc----chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 048281 329 SAGFQPDLVTFSTVLPACSH----LA----ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQM 400 (660)
Q Consensus 329 ~~g~~p~~~t~~~ll~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 400 (660)
+ ...+..+|..+...+.+ .+ +...|...+...++..-.. ..+||+|.-. ...|.+.-|..
T Consensus 770 s--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann---------~~~WnaLGVl-sg~gnva~aQH 837 (1238)
T KOG1127|consen 770 S--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANN---------EGLWNALGVL-SGIGNVACAQH 837 (1238)
T ss_pred H--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhcc---------HHHHHHHHHh-hccchhhhhhh
Confidence 1 11122233333222211 11 1224444444444433222 5566666554 55566666666
Q ss_pred HHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH---h
Q 048281 401 VFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES---R 474 (660)
Q Consensus 401 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~ 474 (660)
.|-.-. +....+|..+...+.++.+++-|...|...+... +.|...|..........|+.-+...+|..--. .
T Consensus 838 CfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 838 CFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred hhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 665433 3456678777777788888888888888777642 23444554444444456666666666665111 1
Q ss_pred cCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 475 YGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN------------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 475 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
-|-.|+..-|.+....-...|+.++-+...+++.. +.+...|...+...-+.+.++.|.....+++.+
T Consensus 917 ~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rligl 996 (1238)
T KOG1127|consen 917 EGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGL 996 (1238)
T ss_pred ccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 13344444444444444556665555544444321 233456666666666666666666666665442
Q ss_pred ------CCCCcchHHHHHHHHHhCCChHHHHHHH
Q 048281 543 ------EPGHCGNYVLMSNIYVAGGKYEEVLDIR 570 (660)
Q Consensus 543 ------~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 570 (660)
...+...--.+++++...|.++.|...+
T Consensus 997 Le~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 997 LELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 1111123334566666666666555443
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=6.2e-07 Score=91.09 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
...-..+...+...|-...|..+|++. ..|...|.+|+..|+..+|..+..+-.++ +||+..|..+.......
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 566778889999999999999999975 67888999999999999999999998883 89999999998888888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
.-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.. +-...+|-.+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8888999888876542 222233334457888888888876332 345678888888888888889999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048281 537 QRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVR 579 (660)
Q Consensus 537 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 579 (660)
...+.++|++.+.|++++.+|.+.|+..+|...+++..+.+..
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 9888889988888999999999888888888888888776643
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=2.2e-05 Score=79.36 Aligned_cols=257 Identities=12% Similarity=0.026 Sum_probs=147.1
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHhc----ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHH
Q 048281 309 TVHEQCGNHDGTLRLFDRMLSAGFQPDLV-TFSTVLPACSH----LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNN 383 (660)
Q Consensus 309 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (660)
..+...|++++|.+.+++..+. .|+.. .+.. ...+.. .+....+.+.+.. .... .+.......
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~-----~~~~~~~~~ 118 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPE-----NPDYWYLLG 118 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcC-----CCCcHHHHH
Confidence 3455667777777777777665 34332 2221 111222 2333333333322 1111 011134445
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhc
Q 048281 384 ALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKL-KPDE--VTFVGVLSACSH 457 (660)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~ 457 (660)
.+...+...|++++|...+++.. ..+...+..+..+|...|++++|...+++...... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 56667788888888888888765 23456777788888888888888888888776421 1222 234456677888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHhhcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHHcC
Q 048281 458 SGFLSQGREFLPLMESRYGVVPTIEHY-T--CVIDMLGRAGQLNEAYE------LALAM-PNEANPVVWRTLLAASRLHG 527 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~------~~~~~-~~~~~~~~~~~l~~~~~~~g 527 (660)
.|++++|..+++.+.......+..... + .++.-+...|..+.+.+ ..... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 888888888888875421111222111 1 22333333443222222 21111 11111222235666778888
Q ss_pred ChHHHHHHHHHHHhcC-C---C-----CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 528 NTDLAEIAAQRVFQLE-P---G-----HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+.+.|...++.+.... . . ........+.++...|++++|.+.+......+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999998876632 1 1 23445567777889999999999999886654
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3.7e-06 Score=76.23 Aligned_cols=318 Identities=14% Similarity=0.081 Sum_probs=168.8
Q ss_pred CCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhhHHH-
Q 048281 230 GIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--KDIFSWNS- 306 (660)
Q Consensus 230 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~- 306 (660)
|+....--+.+++..+.+..++..+.+++..-.+.. +.+....+.|..+|-+..++..|-..++++.+ |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 343444456677777777777888877776655543 22455667777788888888888888887765 32222221
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHH--HhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHH
Q 048281 307 IMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPA--CSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNA 384 (660)
Q Consensus 307 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (660)
-...+-+.+.+.+|+++...|.+. |+...-..-+.+ .-..+++..++.+.+..... .+ ..+.+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~--------Ad~~in 149 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NE--------ADGQIN 149 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cc--------cchhcc
Confidence 234555667778888887777643 222221111111 12233444444433332111 11 233333
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSK----KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF 460 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 460 (660)
......+.|+.+.|.+-|+...+ .....||.-+.. .+.|+++.|++...++++.|++-.+..=..+..--...+.
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs 228 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS 228 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence 34444455555555555554432 123344433322 2345555555555555555543221100000000000000
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 461 LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN----EANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
+..-..+....+ +..+|.-...+.+.|+++.|.+.+-.|+. +.|+++...+.-.- ..++.....+-+
T Consensus 229 vgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 229 VGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred ccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 000000000000 11233333445688999999999988875 36777776654332 235566666777
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 537 QRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 537 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
.-+++++|-.++++..+.-+|++..-++-|..++-+
T Consensus 300 qFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 300 QFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 777888888788999999999998888888777643
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=3e-07 Score=87.93 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=116.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh----h
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG----R 493 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 493 (660)
..+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ ...| .+...+..++. -
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhC
Confidence 4566789999999998753 3556677788899999999999999999975 3334 33444444433 3
Q ss_pred cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh-HHHHHHH
Q 048281 494 AGQLNEAYELALAMPNE--ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKY-EEVLDIR 570 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~ 570 (660)
.+++.+|..+|+++..+ +++.+.+.+..++...|++++|+.++.++++.+|+++.+...++.+....|+. +.+.+++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 34799999999998663 67788899999999999999999999999999999999999999999999988 6677888
Q ss_pred HHHHhC
Q 048281 571 HTMRQQ 576 (660)
Q Consensus 571 ~~~~~~ 576 (660)
.+++..
T Consensus 260 ~qL~~~ 265 (290)
T PF04733_consen 260 SQLKQS 265 (290)
T ss_dssp HHCHHH
T ss_pred HHHHHh
Confidence 887763
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=1.4e-06 Score=78.67 Aligned_cols=147 Identities=9% Similarity=0.071 Sum_probs=113.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQL 497 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 497 (660)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 457777777765444322221 11 012235667788888887776 4566788899999999999999
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 498 NEAYELALAMPN--EANPVVWRTLLAAS-RLHGN--TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 498 ~~A~~~~~~~~~--~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
++|...|++... +.+...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988654 45677888888864 67777 59999999999999999999999999999999999999999999
Q ss_pred HHhCCC
Q 048281 573 MRQQNV 578 (660)
Q Consensus 573 ~~~~~~ 578 (660)
+.+...
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 987543
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.67 E-value=6.6e-06 Score=89.47 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=169.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKK--------DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVG 450 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 450 (660)
...|-..|......++.+.|++++++.... -...|.++++.-...|.-+...++|+++.+. .-.-..|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 678888888999999999999999987632 2357888888888888888999999999984 222356788
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHc
Q 048281 451 VLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN----EANPVVWRTLLAASRLH 526 (660)
Q Consensus 451 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~ 526 (660)
|...|.+.+..++|.++++.|.++++ ....+|..+++.+.+..+-+.|.+++.+... +.......-.+..-.++
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88899999999999999999999655 6778999999999999999999999987543 23455666677777899
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
|+.+.+..+|+..+.-.|.....|..+++.-.+.|..+.++.+|+++...++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999999999999999999999999987743
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=2.2e-06 Score=80.92 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=51.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPGH---CGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.+...+...|++++|+..++++++..|++ +..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45667889999999999999999987765 468899999999999999999999988654
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=0.00028 Score=65.72 Aligned_cols=312 Identities=13% Similarity=0.097 Sum_probs=170.0
Q ss_pred HHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHH---HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048281 171 IGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVN---GYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIM 247 (660)
Q Consensus 171 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 247 (660)
-..-|.+.+...|++.+|+.-|....+-|+..|.++.+ .|...|+...|+.=|.+.++ .+||-..-. +
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR--i----- 110 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR--I----- 110 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH--H-----
Confidence 33445566666778888888887777777777766643 56666777777776666655 345532211 0
Q ss_pred cCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh------------------hHHHHHH
Q 048281 248 MGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIF------------------SWNSIMT 309 (660)
Q Consensus 248 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~li~ 309 (660)
++ ...+.+.|.++.|..=|+.+.+.++. .....+.
T Consensus 111 ---------------QR------------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~ 163 (504)
T KOG0624|consen 111 ---------------QR------------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLK 163 (504)
T ss_pred ---------------Hh------------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHH
Confidence 00 12334455555555555554432210 0111222
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH
Q 048281 310 VHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY 389 (660)
Q Consensus 310 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 389 (660)
.+...|+...|+.....+++.. +-| ...+..-..+|
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wd-------------------------------------------a~l~~~Rakc~ 199 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWD-------------------------------------------ASLRQARAKCY 199 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cch-------------------------------------------hHHHHHHHHHH
Confidence 3333445555555544444421 122 33344444444
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHH-------H--HH
Q 048281 390 TKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVT----FVG-------V--LS 453 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~-------l--l~ 453 (660)
...|++..|+.-+.... ..+..+.--+-..+...|+.+.++...++-++ +.||... |.. | +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333222 23333333444444445555555555554444 2344321 110 1 11
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHc
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPT-----IEHYTCVIDMLGRAGQLNEAYELALAMPN-EA-NPVVWRTLLAASRLH 526 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~ 526 (660)
.....+++.++.+..+...+. .|. ...+..+-.+|...|++.+|++...++.. .| |+.++.--..+|.-.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 233456666666666666542 233 23456667778888999999998887654 34 467888888899988
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..++.|+.-|+++.+.+|++..+- .| .+.|.++.+...++.
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~r---------eG-le~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAR---------EG-LERAKRLKKQSGKRD 395 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHH---------HH-HHHHHHHHHHhccch
Confidence 999999999999999999875432 11 455555555554443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=7.9e-07 Score=75.88 Aligned_cols=122 Identities=11% Similarity=0.007 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 048281 431 DMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN- 509 (660)
Q Consensus 431 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 509 (660)
.+|++.++. .|+. +.....++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++...
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444442 3443 33445566667777777777777664 2334556667777777777777777777766543
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 510 -EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 510 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
+.++..|..+..++...|+.++|+..|++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777766666555543
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=8.5e-05 Score=75.11 Aligned_cols=189 Identities=11% Similarity=0.037 Sum_probs=101.4
Q ss_pred HHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCH--hHHHHH
Q 048281 344 PACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KDV--ASWNIM 416 (660)
Q Consensus 344 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~l 416 (660)
..+...|+++.|...++......+.. ...+..+...|...|++++|...+++... ++. ..|..+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~---------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDD---------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC---------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 34455555555555555555544332 44556666677777777777777666542 111 234456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhccCCHHHHHHH--HHHhHHhcCCC--CChHHHHHHH
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKL-KPDEVTF-V--GVLSACSHSGFLSQGREF--LPLMESRYGVV--PTIEHYTCVI 488 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~~~--~~~~~~~~l~ 488 (660)
...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. ....... ... .........+
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a 271 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAA 271 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHH
Confidence 6777778888888888887754321 1111111 1 222333334433333332 1111110 111 1112223456
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 489 DMLGRAGQLNEAYELALAMPN--EA---------NPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~--~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
.++...|+.++|..+++.+.. .. .........-++...|+.+.|...+..++.+
T Consensus 272 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 272 LALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667788888888888876543 11 1122223334567889999999999888775
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=9.4e-07 Score=75.42 Aligned_cols=107 Identities=11% Similarity=-0.105 Sum_probs=92.5
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 048281 466 EFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (660)
.+++...+ +.|+ .+..+...+...|++++|...|+.... +.+...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555543 3344 466678889999999999999998654 5678899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 544 PGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 544 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
|+++..+..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997754
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.58 E-value=4.3e-06 Score=69.90 Aligned_cols=118 Identities=11% Similarity=-0.012 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
......+...+...|++++|.++|+-+.. +.+..-|-.|..+|...|++++|+..|.++..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34566677778899999999999998543 5677889999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048281 559 AGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLR 621 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 621 (660)
..|+.+.|++.|+...... ..+|+...+....+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999987742 145666666666655555443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=3.2e-05 Score=75.20 Aligned_cols=213 Identities=8% Similarity=0.017 Sum_probs=144.8
Q ss_pred cchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC
Q 048281 350 AALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCG-SMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQ 425 (660)
Q Consensus 350 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 425 (660)
+..+.|......++...+.. ..+|+.-..++...| ++++++..++++. .++..+|+.....+.+.|+
T Consensus 51 e~serAL~lt~~aI~lnP~~---------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGN---------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred CCCHHHHHHHHHHHHHCchh---------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 34445555555555544433 455655555666666 5688888887765 3355677766655666665
Q ss_pred h--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc---CCH---
Q 048281 426 G--KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA---GQL--- 497 (660)
Q Consensus 426 ~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~--- 497 (660)
. ++++.+++++.+.. +-|..+|..-..++...|+++++++.++++++. -.-+...|+....++.+. |..
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccccccccc
Confidence 3 67788888888753 345677877777888888899999999999873 334555666655555444 222
Q ss_pred -HHHHHHHHhCC-C-CCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC---------
Q 048281 498 -NEAYELALAMP-N-EANPVVWRTLLAASRLH----GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG--------- 561 (660)
Q Consensus 498 -~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 561 (660)
++++....++. . +.+...|+.+...+... ++..+|...+.++++.+|.++.++..|+++|++..
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 45666664433 2 45778899988888773 44567989999988889999889999999998743
Q ss_pred ---------ChHHHHHHHHHHH
Q 048281 562 ---------KYEEVLDIRHTMR 574 (660)
Q Consensus 562 ---------~~~~a~~~~~~~~ 574 (660)
..++|.++++.+.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccccccccHHHHHHHHHHHH
Confidence 2366777777773
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=7.2e-06 Score=73.65 Aligned_cols=127 Identities=16% Similarity=0.058 Sum_probs=95.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc
Q 048281 449 VGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH 526 (660)
Q Consensus 449 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 526 (660)
..+-.++...|+-+....+...... ....+......++....+.|++.+|...+++... ++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4455566677777777777766543 3444555666677888888888888888887644 67778888888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
|+.+.|...|.+++++.|+++..+++++..|.-.|+++.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888887776544
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.7e-07 Score=56.64 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=18.7
Q ss_pred CCCCChhHHHHHHHHhHhcCChHHHHHHHccC
Q 048281 164 GLDLDVYIGSALVNTYLKCQFMEEALKVFEEL 195 (660)
Q Consensus 164 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 195 (660)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555556666555555555
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.6e-05 Score=71.83 Aligned_cols=156 Identities=9% Similarity=0.007 Sum_probs=121.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 048281 384 ALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQ 463 (660)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 463 (660)
.-+-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34557889999888765554332221 01223567788888888888764 5677889999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCC--HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048281 464 GREFLPLMESRYGVVPTIEHYTCVIDM-LGRAGQ--LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQR 538 (660)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (660)
|...|+.+.+ -.+.+...+..+..+ |.+.|+ .++|.+++++... +.+...+..+...+...|++++|+..+++
T Consensus 92 A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987 344567888888886 467787 5999999999765 45778999999999999999999999999
Q ss_pred HHhcCCCCcchH
Q 048281 539 VFQLEPGHCGNY 550 (660)
Q Consensus 539 ~~~~~p~~~~~~ 550 (660)
++++.|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999988765433
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=8.7e-06 Score=83.05 Aligned_cols=218 Identities=10% Similarity=-0.022 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCH
Q 048281 333 QPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--KKDV 410 (660)
Q Consensus 333 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~ 410 (660)
+|--..-..+...+...|-...|..++++ ...|..++..|+..|+..+|..+..+-. .|+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----------------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----------------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDP 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----------------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcc
Confidence 33333444455566677777888888776 4567788999999999999998877655 4677
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
..|..+.+...+..-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+ -.+....+|-.+.-+
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCA 528 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHH
Confidence 88888888877777788888888765432 112222223446899999999988766 233445688888888
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
..+.++++.|.+.|..... +.+...||++-.+|.+.|+-.+|...+.++++-+-++...|.+..-+..+.|.|++|.+
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 9999999999999987543 44567999999999999999999999999999888888888888999999999999999
Q ss_pred HHHHHHhC
Q 048281 569 IRHTMRQQ 576 (660)
Q Consensus 569 ~~~~~~~~ 576 (660)
.+.++.+.
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99988554
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.7e-07 Score=55.80 Aligned_cols=33 Identities=42% Similarity=0.623 Sum_probs=25.0
Q ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 048281 265 GYDSGVPVMNALIDMYGKGKCVGEALEIFEMME 297 (660)
Q Consensus 265 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 297 (660)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00034 Score=80.46 Aligned_cols=261 Identities=11% Similarity=-0.016 Sum_probs=116.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCchhHHHHHHHHHHhCCC-----CCchHHHHHHHHHH
Q 048281 211 AQIGEFHKALEVFRRMSKEGIWMSR----FTVTGVLSALIMMGFFKNGRVVHGIVVKMGYD-----SGVPVMNALIDMYG 281 (660)
Q Consensus 211 ~~~~~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~~~ 281 (660)
...|++++|...+++....-...+. ...+.+...+...|+++.|...+.......-. .....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 3455555555555554432111111 12233333444455555555555444322100 01123334444555
Q ss_pred cCCCHHHHHHHHHhcCC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCCC--HHHHHHHHHHH
Q 048281 282 KGKCVGEALEIFEMMEE-------KD----IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAG--FQPD--LVTFSTVLPAC 346 (660)
Q Consensus 282 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~t~~~ll~~~ 346 (660)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 55555555555444321 00 1122333344445566666655555543310 1111 12222333444
Q ss_pred hcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCH----hHHHHHHHH
Q 048281 347 SHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDV----ASWNIMILG 419 (660)
Q Consensus 347 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~li~~ 419 (660)
...|+.+.|...+............. ...........+..+...|+.+.|...+..... ... ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYH--SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhccccc--HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 55566666655555543321110000 000011111222334446666666666654431 111 123445566
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 420 YGMDGQGKEALDMFSCMCEA----KLKPD-EVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
+...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.++.+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777776543 22221 12444455567777777777777777766
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=2.2e-05 Score=70.61 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=131.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI 488 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 488 (660)
|... ..+-..+...|+.+....+..+.... -.-|......++....+.|++..|...++++.. .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3444 55666777788888888887776543 133444555678888999999999999999987 7788899999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH
Q 048281 489 DMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 566 (660)
-+|.+.|++++|..-|.+..+ ..++...+.+.-.+.-.|+.+.|+.++.......+.+..+-..|+.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 999999999999998887654 567788999999999999999999999999888887888889999999999999999
Q ss_pred HHHHHH
Q 048281 567 LDIRHT 572 (660)
Q Consensus 567 ~~~~~~ 572 (660)
..+...
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887554
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=3.2e-05 Score=82.96 Aligned_cols=131 Identities=13% Similarity=0.042 Sum_probs=77.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV-TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCV 487 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 487 (660)
++..+..|.....+.|++++|..+++...+. .|+.. ....+...+.+.+++++|....+.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3455556666666666666666666666663 45443 344445566666666666666666654 233344555566
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 048281 488 IDMLGRAGQLNEAYELALAMPN-E-ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 488 ~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (660)
..++...|++++|.++|+++.. . .+..+|..+..++...|+.++|...|+++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6666666666666666666543 2 234566666666666666666666666666653
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00017 Score=70.75 Aligned_cols=176 Identities=16% Similarity=0.068 Sum_probs=119.6
Q ss_pred CCHHHHHHHHhcCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048281 393 GSMRDAQMVFTKMSK------KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 393 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
.++.++...-+.++. ++...+...+.+.........+..++. +... -.-...-|...+ .+...|.+++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 355566666666652 344555555554433332222222222 2222 011222333333 3455688899999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 048281 467 FLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 544 (660)
.++.+++ ..+-|+..+....+.+.+.++.++|.+.++++.. .|+ ...+-++..++.+.|+..+|+.+++.....+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999876 5666777778888889999999999999988654 454 67788888899999999999999999888899
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 545 GHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 545 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
+++..|..|+..|..+|+..++....-+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999988887777776665554
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=2.8e-05 Score=73.33 Aligned_cols=164 Identities=14% Similarity=0.009 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CH---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--K-DV---ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV----TF 448 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 448 (660)
...+..++..+.+.|+++.|...|+++.. | +. .++..+..++...|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 66778888899999999999999998763 3 22 46788889999999999999999999985 34322 34
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCChH-H--------------HHHHHHHHhhcCCHHHHHHHHH
Q 048281 449 VGVLSACSHS--------GFLSQGREFLPLMESRYGVVPTIE-H--------------YTCVIDMLGRAGQLNEAYELAL 505 (660)
Q Consensus 449 ~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~-~--------------~~~l~~~~~~~g~~~~A~~~~~ 505 (660)
..+..++... |+.++|.+.++.+.+.+.-.+... . ...+...|.+.|++++|...++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4444455543 788999999999987422211110 1 1245677889999999999998
Q ss_pred hCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 048281 506 AMPN-EA----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 506 ~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 544 (660)
+... .| ....|..++.++...|++++|...++.+....|
T Consensus 191 ~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 191 TVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8643 12 356899999999999999999999988876555
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=6.3e-06 Score=69.99 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
......+...+...|++++|.+.++.+.. +.+...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34455666677777777777777776533 3456677777777888888888888888888888888888888888888
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048281 559 AGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~~~~ 576 (660)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777664
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=0.00071 Score=66.55 Aligned_cols=180 Identities=20% Similarity=0.150 Sum_probs=129.6
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 048281 376 IDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVL-S 453 (660)
Q Consensus 376 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~ 453 (660)
.++...+...+........-..+..++.+..+ .....+--..-.+...|++++|+..++.++.. .||...|..+. .
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~ 348 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGD 348 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 33455555555443333322233333322222 23344444445566789999999999999886 66666665554 5
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 530 (660)
.+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|+..+|+.+++.... +.|+..|..|..+|...|+..
T Consensus 349 i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 349 ILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 78899999999999999976 4455 56778889999999999999999988654 568899999999999999977
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 531 LAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
++... .+..|.-.|+|++|+..+....++.
T Consensus 426 ~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLA-----------------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 76554 4556677899999999999887753
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=3.3e-05 Score=76.94 Aligned_cols=240 Identities=10% Similarity=-0.013 Sum_probs=147.8
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHH
Q 048281 312 EQCGNHDGTLRLFDRMLSAGFQPD-LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYT 390 (660)
Q Consensus 312 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (660)
.+.|+..+|.-.|+..++. .|. ...|..|-......++-..|+..+.++.+..+.. ..+.-+|.-.|.
T Consensus 296 m~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---------leaLmaLAVSyt 364 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---------LEALMALAVSYT 364 (579)
T ss_pred HhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc---------HHHHHHHHHHHh
Confidence 3445555555555544443 232 2234444444444444444555555554444333 455555666666
Q ss_pred hcCCHHHHHHHHhcCCC--C----------CHhHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhc
Q 048281 391 KCGSMRDAQMVFTKMSK--K----------DVASWNIMILGYGMDGQGKEALDMFSCMC-EAKLKPDEVTFVGVLSACSH 457 (660)
Q Consensus 391 ~~g~~~~A~~~~~~~~~--~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~ 457 (660)
..|.-..|.+.++.-.. | +...-+. ..+..........++|-++. ..+..+|+..+..|.-.|--
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 66666666666654321 0 0000000 11111222334455555544 44545777778877777888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHH
Q 048281 458 SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGNTDLAEIA 535 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~ 535 (660)
.|++++|...|+.++. --+-|...|+.|.-.++...+.++|+..|.+... +|. +.++..|.-+|...|.+++|...
T Consensus 443 s~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred chHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 8999999999999976 3344568899999999999999999999999765 454 56888899999999999999999
Q ss_pred HHHHHhcCCCC-----c-----chHHHHHHHHHhCCChHHH
Q 048281 536 AQRVFQLEPGH-----C-----GNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 536 ~~~~~~~~p~~-----~-----~~~~~l~~~~~~~g~~~~a 566 (660)
|-.++.+.+.+ . .+|..|=.++...++.|-+
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 99999875541 1 2455555555555555433
No 126
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.0001 Score=71.76 Aligned_cols=192 Identities=11% Similarity=0.067 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDG-QGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
++..+-..+...++.++|+.+...+.+ .+..+|+.-..++...| ++++++..++++.+.. +-+..+|..-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 344445556667888899999888763 24567777777777777 5799999999999864 234445655444455
Q ss_pred ccCC--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc---CCh
Q 048281 457 HSGF--LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH---GNT 529 (660)
Q Consensus 457 ~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~ 529 (660)
+.|. .+++..+++.+.+ .-+-+..+|+....++.+.|+++++++.++++.. ..+...|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 5555 3678889988886 3455778899889999999999999999999765 45778888887776654 222
Q ss_pred ----HHHHHHHHHHHhcCCCCcchHHHHHHHHHhC----CChHHHHHHHHHHHh
Q 048281 530 ----DLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG----GKYEEVLDIRHTMRQ 575 (660)
Q Consensus 530 ----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~ 575 (660)
+.++....++++.+|+|..+|..+..++... ++..+|.+......+
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 4678888899999999999999999999873 445667777766554
No 127
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.7e-05 Score=71.60 Aligned_cols=205 Identities=12% Similarity=0.013 Sum_probs=147.7
Q ss_pred hHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCChHH----
Q 048281 411 ASWNIM-ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLS--ACSHSGFLSQGREFLPLMESRYGVVPTIEH---- 483 (660)
Q Consensus 411 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---- 483 (660)
.+|..+ ..++.-.|++++|...--..++.. ++ ..+..+++ ++...++.+.|...|++.++ ..|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhH
Confidence 444444 345677888898888777766542 22 22333443 34456788899998888754 4454322
Q ss_pred ---------HHHHHHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 484 ---------YTCVIDMLGRAGQLNEAYELALAMPN------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 484 ---------~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
+..=.+-..+.|++.+|.+.|.+... +++...|.....+..+.|+.++|+.-.+++++++|.-..
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 22223445688999999999988653 345566777778889999999999999999999999888
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCcccC
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGDCCA 628 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~p~ 628 (660)
.|..-+.++...++|++|.+-+++..+..-. .++.+.+.+....+++..-++.
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s---------------------------~e~r~~l~~A~~aLkkSkRkd~ 375 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD---------------------------CEIRRTLREAQLALKKSKRKDW 375 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------cchHHHHHHHHHHHHHhhhhhH
Confidence 9999999999999999999999998764321 1344556666677777777777
Q ss_pred ceeeccCCChhhhhHhhhHH
Q 048281 629 GTLFDSDSTASGFEKHRLYL 648 (660)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~ 648 (660)
..++.+..+++.-|+.+.++
T Consensus 376 ykilGi~~~as~~eikkayr 395 (486)
T KOG0550|consen 376 YKILGISRNASDDEIKKAYR 395 (486)
T ss_pred HHHhhhhhhcccchhhhHHH
Confidence 77777777777777777765
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=1.7e-05 Score=78.48 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=98.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASR 524 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 524 (660)
....|+..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++... +.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445666677778888888888888763 244 445577777778888888888877543 346667777777899
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
..++++.|+.+++++.++.|++..+|..|+.+|...|++++|+-.++.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998877
No 129
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.23 E-value=0.00034 Score=76.81 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=150.1
Q ss_pred CCH-HHHHHHHHHHhcccchHHHHHHHHHHHHh-CccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C-
Q 048281 334 PDL-VTFSTVLPACSHLAALMHGRQIHGYIVVN-GLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK-D- 409 (660)
Q Consensus 334 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~- 409 (660)
||. ..|...|.-....++.+.|+++.++++.. ++... ..-..+|.++++.-..-|.-+...++|++..+- |
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-----eEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-----EEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-----HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch
Confidence 443 45666666677778888888888777643 11110 001457777777777777788888888887743 2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+...-.-.+....-.+.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 356788888899999999999999999876 3456678888888888888888999999988773222224556667777
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 490 MLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
+-.+.|+.+.+..+|+.... +.-...|+.++..-.++|+.+.+..+|++++.+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 77889999998888887654 334568999999999999999999999998886
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.00022 Score=77.50 Aligned_cols=149 Identities=7% Similarity=0.024 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
.++..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.+++.+.+.. +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 3455566666666666666666665542 3455566666666666 666666666655542 33
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
..+++..+.++|..+.. ..+-+...+..+.+..... +....-+.++--+-..|...++++.+..++
T Consensus 181 ~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 34455555666665554 2222222222222221111 001122334444555666667777777777
Q ss_pred HHHHhcCCCCcchHHHHHHHHH
Q 048281 537 QRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 537 ~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7777777777666666666655
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=3.8e-05 Score=65.20 Aligned_cols=113 Identities=7% Similarity=-0.005 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 048281 432 MFSCMCEAKLKPDE-VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN- 509 (660)
Q Consensus 432 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 509 (660)
.+++.... .|+. .....+...+...|++++|.+.++.+.. ..+.+...+..+...|.+.|++++|...+++...
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 4433 4455566678888999999999998876 3345678888899999999999999999887643
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 510 -EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 510 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
+.+...+..+...+...|+++.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 456778888889999999999999999999999998754
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.0088 Score=59.69 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=120.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI 488 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 488 (660)
..+|-..++.-.+..-...|..+|.+..+.+..+ +...+++++..+|. ++..-|.++|+.=.+++| .+..--...+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 3467777887778888899999999999998877 66677788876665 789999999998877443 4445567788
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc----chHHHHHHHHHh
Q 048281 489 DMLGRAGQLNEAYELALAMPNE-----ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC----GNYVLMSNIYVA 559 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~ 559 (660)
+-+.+.++-..|..+|++.... ....+|..++..-..-|+.+.+.++-++....-|.+. ..-..+.+-|.=
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~ 522 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGI 522 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhh
Confidence 8899999999999999987643 2347999999999999999999999988877655221 123345555655
Q ss_pred CCChHHHHHHHHHH
Q 048281 560 GGKYEEVLDIRHTM 573 (660)
Q Consensus 560 ~g~~~~a~~~~~~~ 573 (660)
.+.+..-..-++.+
T Consensus 523 ~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 523 LDLYPCSLDELKFL 536 (656)
T ss_pred cccccccHHHHHhh
Confidence 56555444444433
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=9.2e-05 Score=73.44 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG 459 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 459 (660)
....+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.+... +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3444555666668889999999999887776667778888888888889999998888652 334455555556688888
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 048281 460 FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN 509 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 509 (660)
+.+.|+.+.+++.+ -.+-+..+|..|+.+|...|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999998876 3444457889999999999999999988888774
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.19 E-value=0.0004 Score=74.75 Aligned_cols=138 Identities=9% Similarity=0.021 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS--KK-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV-TFVGVLSA 454 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 454 (660)
+..+..|.....+.|+.++|+.+++... .| +...+..++.++.+.+++++|+..+++.... .|+.. ....+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence 7788889999999999999999999876 34 5567888889999999999999999999985 56554 45555667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLL 520 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 520 (660)
+.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++... .+....|+.++
T Consensus 164 l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 164 WDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8899999999999999986 3444578889999999999999999999998654 23344444443
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0014 Score=59.20 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cC
Q 048281 384 ALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH----SG 459 (660)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 459 (660)
.-...|+..|++++|.+.......-..... =...+.+..+.+-|...+++|.+- -+..|.+.|..++.+ .+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccch
Confidence 334456666777777766665322222222 223344555666666666666652 244555555555432 23
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh-HHHHHHH
Q 048281 460 FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNT-DLAEIAA 536 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 536 (660)
.+..|.-+|+++.+ ...|+..+.+....+....|++++|..++++... ..++.+...++-.-...|.. +--.+..
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45566666666644 3555555555555555566666666666555433 23444444444444444433 3333444
Q ss_pred HHHHhcCCCC
Q 048281 537 QRVFQLEPGH 546 (660)
Q Consensus 537 ~~~~~~~p~~ 546 (660)
.++....|.+
T Consensus 266 ~QLk~~~p~h 275 (299)
T KOG3081|consen 266 SQLKLSHPEH 275 (299)
T ss_pred HHHHhcCCcc
Confidence 4444445544
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5.9e-06 Score=50.84 Aligned_cols=35 Identities=31% Similarity=0.580 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCc
Q 048281 100 FTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDK 134 (660)
Q Consensus 100 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 134 (660)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888763
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.024 Score=60.28 Aligned_cols=510 Identities=11% Similarity=0.061 Sum_probs=261.1
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHh--HcCCChhHHHHHHccC--CCCCCcccHHHHHHHHHcCCChhHH
Q 048281 43 AHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMY--SKCCQMKYALFVFNNL--SCEPNVFTYNAMISGFYSNDFAFKG 118 (660)
Q Consensus 43 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a 118 (660)
...++++.|.+..+.+.+.. |+ ..|...+.++ .|.|+.++|..+++.. ....|..+...+-..|...+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35577888888888877763 33 3455555554 4789999999998841 2234777888889999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC----------hHHH
Q 048281 119 LDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQF----------MEEA 188 (660)
Q Consensus 119 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 188 (660)
..+|++..+. -|+..-...+..++.+.+++.+-.++--++-+. ++-+.+.+=++++.+...-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999999865 577888888889999998887766665555553 33445554455555543321 2334
Q ss_pred HHHHccCCCCC-----chhHHHHHHHHHhCCChhHHHHHH-HHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHH
Q 048281 189 LKVFEELPLRD-----VVLWNAMVNGYAQIGEFHKALEVF-RRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVV 262 (660)
Q Consensus 189 ~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 262 (660)
.+.++.+.+.+ ..-.-.-...+-..|.+++|++++ ....+.-...+...-+--+..+...+++.+..++-..+.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555554333 111112234455678899999998 444443334444555566777888888998888888888
Q ss_pred HhCCCCCchHHHHHHHHHH----------------cCCCHHHHHHHHHhcCCC-ChhhHHHHHHHHH---HcCChHHHHH
Q 048281 263 KMGYDSGVPVMNALIDMYG----------------KGKCVGEALEIFEMMEEK-DIFSWNSIMTVHE---QCGNHDGTLR 322 (660)
Q Consensus 263 ~~g~~~~~~~~~~li~~~~----------------~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~a~~ 322 (660)
..|... |...++.+. ..+..+...+..++.... .--.|-+-+..+. .-|+.+++.-
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 877332 333222221 122233333333222221 1122333333332 3466666554
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCH-----HH
Q 048281 323 LFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSM-----RD 397 (660)
Q Consensus 323 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~ 397 (660)
.|-+-. |-.| .|..=+..+...=..+....++...+.......+..+ -...+...+..-.-.|.+ +.
T Consensus 330 ~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k---~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEK---VLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHH---HHHHHHHHHHHHHHhhccccCChHH
Confidence 433221 1122 1111111111111112222222222111111000000 000011111111111211 11
Q ss_pred HH----HHHhcCCC---------C------CH---hHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHH
Q 048281 398 AQ----MVFTKMSK---------K------DV---ASWNIMILGYGMDGQGK---EALDMFSCMCEAKLKPDEVTFVGVL 452 (660)
Q Consensus 398 A~----~~~~~~~~---------~------~~---~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll 452 (660)
-. +++-...+ | +. .+-+.|+..+-+.++.. +|+-+++.-.... +-|..+-..+|
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLi 480 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHH
Confidence 11 11111111 1 11 24566777777777644 4555555554432 33445556677
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCh
Q 048281 453 SACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN---EANPVVWRTLLAASRLHGNT 529 (660)
Q Consensus 453 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 529 (660)
..|+-.|-...|.++|..+--+ .+..|..-|. +..-+...|++..+...+..... ..-..+-..+..| .+.|.+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~y 557 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAY 557 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCch
Confidence 7888888888888888877653 6666654332 23344556666666665554321 1111122222333 345666
Q ss_pred HHHHHHHHHHHhcCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 530 DLAEIAAQRVFQLEPG----HCGNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 530 ~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
.+..++..-=-++.-. -..+-+.....+...++.++-...+..|.
T Consensus 558 SkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 558 SKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 5554443221122111 11233455666777788777777777665
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00015 Score=62.25 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHH
Q 048281 458 SGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPNE-ANP----VVWRTLLAASRLHGNTDL 531 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~ 531 (660)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.+... |+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555544211110 0122223344455555555555555554331 222 123334455555555555
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 532 AEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
|+..++.. .-.+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442 11222334455566666666666666666554
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=8.1e-06 Score=50.20 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD 444 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 444 (660)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688999999999999999999999999998887
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0026 Score=69.42 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048281 199 DVVLWNAMVNGYAQIGEFHKALEVFRRMSK 228 (660)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 228 (660)
+...|..|+..+...+++++|.++.+...+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566777888888888888888888886555
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00049 Score=61.59 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIM---ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
..+|..++-+...+|+.+.|...++.+...-+.++... ..-+-..|++++|+++++..++.. +.|.+++--=+...
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34445555555556666666665555442111111111 111233455556666666555543 33444444434344
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC---ChH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHG---NTD 530 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g---~~~ 530 (660)
-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.--++++.- |.++..+..+...+.-.| +.+
T Consensus 131 ka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 444544555555555554 3445555555555555555555555555555322 223333444444433333 344
Q ss_pred HHHHHHHHHHhcCCC
Q 048281 531 LAEIAAQRVFQLEPG 545 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~ 545 (660)
.|.+.|.+++++.|.
T Consensus 209 ~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 209 LARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHhChH
Confidence 555555555555553
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0013 Score=58.89 Aligned_cols=163 Identities=10% Similarity=0.080 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGV-LSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
.|..++-+....|+.+.|...++++...- |.+.-...+ ..-+-..|.+++|+++++.+.++ -+.|..++-.=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 34455566677899999999999998863 554333222 22355678999999999999984 46677777777777
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC---ChHH
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG---KYEE 565 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 565 (660)
.-..|+--+|++-+.+... ..|...|.-+...|...|++++|.-++++++-.+|.++..+..++.++.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 7778887788877665443 4799999999999999999999999999999999999999999999987665 5667
Q ss_pred HHHHHHHHHhCCC
Q 048281 566 VLDIRHTMRQQNV 578 (660)
Q Consensus 566 a~~~~~~~~~~~~ 578 (660)
|.+++.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888766544
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=8.6e-06 Score=49.68 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 048281 100 FTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLP 132 (660)
Q Consensus 100 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 132 (660)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=3.5e-05 Score=70.76 Aligned_cols=92 Identities=11% Similarity=0.001 Sum_probs=66.1
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDL 531 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 531 (660)
-..+.+++.+|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+.... +....+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45667788888888888775 3344556666677778888888888777776543 2234577777778888888888
Q ss_pred HHHHHHHHHhcCCCCc
Q 048281 532 AEIAAQRVFQLEPGHC 547 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~ 547 (660)
|++.|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 8888888888888775
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.99 E-value=2.2e-05 Score=57.43 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG-KYEEVLDIRHTMRQ 575 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 575 (660)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999999998865
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=5.8e-05 Score=59.21 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 560 (660)
.+..+...+...|++++|...++++.. +.+...+..+...+...|+++.|...++++.+..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 355667777888888888888887543 334467777888888889999999999999888888888888899999999
Q ss_pred CChHHHHHHHHHHHhC
Q 048281 561 GKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 561 g~~~~a~~~~~~~~~~ 576 (660)
|++++|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999888887653
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00011 Score=73.41 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=45.6
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
+...|++++|++.|+++.. +.+...|..+..+|...|++++|+..++++++++|+++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445555555555554332 23344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 048281 569 IRHTMRQ 575 (660)
Q Consensus 569 ~~~~~~~ 575 (660)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555544
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.98 E-value=0.00045 Score=59.19 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDE----VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI--EHYT 485 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 485 (660)
.|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|+. ....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344455554 4778888888888888763 332 22333446678889999999999998874 423322 3445
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048281 486 CVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVF 540 (660)
Q Consensus 486 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (660)
.|..++...|++++|+..++.... ...+..+......+...|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 577888889999999999987654 3345567777888999999999999988753
No 149
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.002 Score=58.33 Aligned_cols=168 Identities=11% Similarity=0.047 Sum_probs=111.9
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048281 324 FDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFT 403 (660)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 403 (660)
.+.+.......+......-...|.+.++++.|.+....... ....-.=+..+.+..+++-|.+.++
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~--------------lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN--------------LEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333334457777788887776654211 2233333556677888899999999
Q ss_pred cCCCC-CHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 048281 404 KMSKK-DVASWNIMILGYGM----DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVV 478 (660)
Q Consensus 404 ~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 478 (660)
.|.+- +-.+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++++..+ ..
T Consensus 162 ~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~ 238 (299)
T KOG3081|consen 162 KMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DA 238 (299)
T ss_pred HHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cC
Confidence 88865 34566666666554 34688999999999875 5899999999999999999999999999999873 44
Q ss_pred CChHHHHHHHHHHhhcCCHHHH-HHHHHhCC
Q 048281 479 PTIEHYTCVIDMLGRAGQLNEA-YELALAMP 508 (660)
Q Consensus 479 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 508 (660)
.++.+...++-+-...|...++ .+.+.+..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5566777777666666765444 33444443
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.028 Score=56.33 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHh-CccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCC
Q 048281 352 LMHGRQIHGYIVVN-GLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KDVASWNIMILGYGMDGQ 425 (660)
Q Consensus 352 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~ 425 (660)
.+....+++.+... ..++ ..+|..+++.-.+..-+..|..+|.+..+ ..+...++++.-||. ++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~---------tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL---------TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCC---------ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CC
Confidence 44455555555443 2333 56777788888888888888888887763 256677777777665 56
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHhhcCCHHHHHH
Q 048281 426 GKEALDMFSCMCEAKLKPDE-VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI--EHYTCVIDMLGRAGQLNEAYE 502 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 502 (660)
..-|.++|+--.+. -+|. .-....+.-+.+.++-..+..+|+....+ ++.|+. .+|..+++-=..-|++..+.+
T Consensus 417 ~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 417 KETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred hhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 67788888765543 2333 33344566677778888888888888875 565553 678888887788888888877
Q ss_pred HHHhC
Q 048281 503 LALAM 507 (660)
Q Consensus 503 ~~~~~ 507 (660)
+-+++
T Consensus 494 lekR~ 498 (656)
T KOG1914|consen 494 LEKRR 498 (656)
T ss_pred HHHHH
Confidence 76654
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.9e-05 Score=48.15 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP 443 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 443 (660)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=1e-05 Score=61.82 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=52.0
Q ss_pred cCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHH
Q 048281 494 AGQLNEAYELALAMPN-EA---NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDI 569 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 569 (660)
.|++++|+.+++++.. .| +...|..+..+|.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4566667776666543 12 344555677777777777777777777 556666666666778888888888888877
Q ss_pred HHH
Q 048281 570 RHT 572 (660)
Q Consensus 570 ~~~ 572 (660)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00015 Score=59.89 Aligned_cols=94 Identities=16% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---cchHHHHH
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN-EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH---CGNYVLMS 554 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 554 (660)
++..++..+.+.|++++|.+.++.+.. .|+ ...+..+..++...|+++.|...++.++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344445555555555555555555432 121 2344445555666666666666666666555543 33455556
Q ss_pred HHHHhCCChHHHHHHHHHHHhC
Q 048281 555 NIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 555 ~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.++.+.|++++|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666665543
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.88 E-value=4.1e-05 Score=55.10 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=49.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+...+...|++++|+..|+++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888899999999999999999998889999999999999999999998888654
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00031 Score=57.95 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=72.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN----PVVWRTLL 520 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~ 520 (660)
++..+...+...|++++|...+..+.+...-.+ ....+..+..++.+.|++++|...++.+.. .|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777778888887777765321111 134556677788888888888888877543 222 45677788
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCcchH
Q 048281 521 AASRLHGNTDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 888888999999999999999888875443
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00019 Score=66.02 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=72.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcC
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAG 495 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 495 (660)
..-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 344677888888888888888852 33555566666788888888888887777764 4444 478888888888888
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHH
Q 048281 496 QLNEAYELALAMPN-EANPVVWRTLL 520 (660)
Q Consensus 496 ~~~~A~~~~~~~~~-~~~~~~~~~l~ 520 (660)
++++|++.|++... .|+..+|..=+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 99888888888654 56655554433
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00039 Score=69.41 Aligned_cols=105 Identities=12% Similarity=-0.031 Sum_probs=78.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 048281 453 SACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 453 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 530 (660)
..+...|++++|++.|+++++ ..+.+...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345566788888888888776 3334566777778888888888888888877643 446677888888888899999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 048281 531 LAEIAAQRVFQLEPGHCGNYVLMSNIYVA 559 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 559 (660)
+|+..|+++++++|+++.....+..+..+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999887776666555443
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.71 E-value=0.1 Score=55.67 Aligned_cols=123 Identities=18% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCChhHHHHHHccCC-CCCCcccHHHHHHHH--HcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHH
Q 048281 80 CCQMKYALFVFNNLS-CEPNVFTYNAMISGF--YSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKI 156 (660)
Q Consensus 80 ~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 156 (660)
.+++..|....++.. ..||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 355666666555322 33443 345555544 4678888888888777655544 677788888888888888888888
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhHhcCChH----HHHHHHccCCCCCchhHHHH
Q 048281 157 HGLVFKLGLDLDVYIGSALVNTYLKCQFME----EALKVFEELPLRDVVLWNAM 206 (660)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l 206 (660)
|++.... .|+......+..+|+|.+.+. .|.++++..+++--..|+.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 8877664 455666667777777776653 36667776665544455433
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=0.00013 Score=53.04 Aligned_cols=53 Identities=21% Similarity=0.356 Sum_probs=44.7
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
...|++++|+..|+++++..|+++..+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788889999999999989988888888999999999999999988887664
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0011 Score=61.49 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=89.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCcchH
Q 048281 476 GVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHG---NTDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
..+-|...|-.|...|.+.|+...|..-|.+... .+++..+..+..++.... ...++..+++++++++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3456788999999999999999999999988654 567778888887765443 46789999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048281 551 VLMSNIYVAGGKYEEVLDIRHTMRQQNVR 579 (660)
Q Consensus 551 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 579 (660)
..|+..+...|++.+|...++.|.+....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999987543
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00051 Score=53.63 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=47.4
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 048281 452 LSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNT 529 (660)
Q Consensus 452 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 529 (660)
...+...|++++|..+++.+.+ ..+.+...+..+...+...|++++|.+.++.... +.+..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444555555555555543 1222224444555555555555555555554322 22334555666666666666
Q ss_pred HHHHHHHHHHHhcCC
Q 048281 530 DLAEIAAQRVFQLEP 544 (660)
Q Consensus 530 ~~A~~~~~~~~~~~p 544 (660)
+.|...+.++++..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666665554
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0012 Score=58.51 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=90.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD--EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTC 486 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 486 (660)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+.++.+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345667777788888999999999988886543332 356777777888889999999998888762 3334566677
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 487 VIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
+..+|...|+...+..-++... ..+++|.+.++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777877777666554333211 23677889999999988877 5555555555443
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.65 E-value=6.5e-05 Score=44.52 Aligned_cols=31 Identities=35% Similarity=0.656 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 048281 100 FTYNAMISGFYSNDFAFKGLDFFNHMRQLGV 130 (660)
Q Consensus 100 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 130 (660)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00011 Score=52.80 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=50.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 487 VIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
+...+...|++++|.+.|+++.. +.+...|..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45678899999999999998654 34667899999999999999999999999999999874
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.0006 Score=60.47 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN-EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI 556 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 556 (660)
..+..+...|...|++++|...|++... .|+ ...+..+...+...|++++|+..++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4556666677777777777777776532 111 35778888889999999999999999999999888888888888
Q ss_pred HHhCCC
Q 048281 557 YVAGGK 562 (660)
Q Consensus 557 ~~~~g~ 562 (660)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=8e-05 Score=44.13 Aligned_cols=31 Identities=39% Similarity=0.552 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKL 441 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 441 (660)
++|+.|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888877663
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0029 Score=66.08 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=67.6
Q ss_pred CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 048281 407 KKDVASWNIMILGYGMD-----GQGKEALDMFSCMCEAKLKPDE-VTFVGVLSACSHS--------GFLSQGREFLPLME 472 (660)
Q Consensus 407 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 472 (660)
..+...|...+++.... ++...|..+|++.++. .|+. ..|..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677787777764432 2366888888888885 5654 3333332222111 01122222222221
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 473 SRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 473 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
.......+...|.++.-.+...|++++|...++++.. .|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1001222334444444444445555555555555332 34444555555555555555555555555555555544
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.086 Score=51.37 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFL 461 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 461 (660)
.+..+.-+...|+...|.++-.+..-|+...|-..+.+++..+++++-..+-.. +-.+.-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455666778888888888888778888888888888888888776655332 22346777888888888888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 462 SQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
.+|..+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88887777631 24456778888888888776544
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.00064 Score=60.05 Aligned_cols=94 Identities=13% Similarity=-0.061 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN-EA----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMS 554 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 554 (660)
....|..++..+...|++++|...|++... .+ ...+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 345667777788888999999998887632 12 2357889999999999999999999999999999888888888
Q ss_pred HHHH-------hCCChHHHHHHHHHH
Q 048281 555 NIYV-------AGGKYEEVLDIRHTM 573 (660)
Q Consensus 555 ~~~~-------~~g~~~~a~~~~~~~ 573 (660)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888777777654
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.079 Score=51.63 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRL 525 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (660)
.+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..|+|++-.++-.. +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555667777889888887775554 45 8899999999999999999998887654 3467889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 526 HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
.|+..+|.....++ | +..-...|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999998888761 1 245788899999999998875443
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00027 Score=52.24 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=51.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 520 LAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
...|.+.+++++|.+.++++++++|+++..+...+.++...|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998876543
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.55 E-value=0.0017 Score=54.90 Aligned_cols=89 Identities=15% Similarity=-0.005 Sum_probs=78.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 048281 487 VIDMLGRAGQLNEAYELALAMP--NEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYE 564 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 564 (660)
..--+...|++++|..+|.-+. ..-+..-|..|..+|...+++++|+..|..+..++++||..+...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344558999999999998743 35677788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048281 565 EVLDIRHTMRQ 575 (660)
Q Consensus 565 ~a~~~~~~~~~ 575 (660)
.|+..|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999877
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0054 Score=54.13 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=53.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD--EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCV 487 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 487 (660)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|+..++.+.+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34666777777788888888888888876532221 246666777777888888888888877652 22233445555
Q ss_pred HHHHh
Q 048281 488 IDMLG 492 (660)
Q Consensus 488 ~~~~~ 492 (660)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0032 Score=60.56 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSA-CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367778888888888999999999998543 2334444444433 33356778899999999984 6667788999999
Q ss_pred HHhhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 490 MLGRAGQLNEAYELALAMPNE-A----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.+.+.|+.+.|..+|++.... + ....|...+..=.+.|+.+...++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999986542 2 33589999999999999999999999999987774
No 175
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.001 Score=51.72 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHhhhC--------CHHHHHHHHHHHHHhCCCCChhHHH
Q 048281 103 NAMISGFYSNDFAFKGLDFFNHMRQLGV-LPDKYTFPCLIKCCCDVM--------AVLEVKKIHGLVFKLGLDLDVYIGS 173 (660)
Q Consensus 103 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 173 (660)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-....+|+.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 899999999999987663 3456778899999999999999999
Q ss_pred HHHHHhHh
Q 048281 174 ALVNTYLK 181 (660)
Q Consensus 174 ~li~~~~~ 181 (660)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.46 E-value=0.045 Score=55.90 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=73.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQG 464 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 464 (660)
...++...|+.++|..+ +..+|-.+-++++-+++-. .+..+...+...+.+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 34455556666666554 2344555555555544432 2334455555555666677778
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHH-H----------HHHHHHHHHHcCChHHH
Q 048281 465 REFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPV-V----------WRTLLAASRLHGNTDLA 532 (660)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~----------~~~l~~~~~~~g~~~~A 532 (660)
-++|..|-. ...++++....++|.+|..+-++.++ .+++. . +.-.-.+|.+.|+..+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 888887743 24567777888888888888888775 23321 1 12223456666777777
Q ss_pred HHHHHHHHh
Q 048281 533 EIAAQRVFQ 541 (660)
Q Consensus 533 ~~~~~~~~~ 541 (660)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 777766543
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0015 Score=65.24 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=93.6
Q ss_pred CCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCC-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc
Q 048281 62 GIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEP-----NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT 136 (660)
Q Consensus 62 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 136 (660)
+...+......+++.+....+++.+..++-+....| -..+.+++|+.|...|..+.++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 345566777778888888888888888775422222 233557899999999999999999998888999999999
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhc
Q 048281 137 FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKC 182 (660)
Q Consensus 137 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 182 (660)
|+.||+.+.+.|++..|.++...|...+.-.+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888877666666666656555555
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.40 E-value=0.00062 Score=51.90 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048281 424 GQGKEALDMFSCMCEAKLK-PDEVTFVGVLSACSHSGFLSQGREFLPL 470 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 470 (660)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555555555443210 1222233344444444555555544444
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.38 E-value=0.15 Score=49.18 Aligned_cols=245 Identities=18% Similarity=0.153 Sum_probs=166.9
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH
Q 048281 312 EQCGNHDGTLRLFDRMLSAGFQPDLV--TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY 389 (660)
Q Consensus 312 ~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 389 (660)
.-.|+++.|.+-|+.|... |... -...+.-..-+.|+.+.++++-+..-..-... ...+.+.+...
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l---------~WA~~AtLe~r 198 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL---------PWAARATLEAR 198 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC---------chHHHHHHHHH
Confidence 3458888888888888852 3322 22333334457788888888888776665555 67888999999
Q ss_pred HhcCCHHHHHHHHhcCC-----CCCHh--HHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcc
Q 048281 390 TKCGSMRDAQMVFTKMS-----KKDVA--SWNIMILGYG---MDGQGKEALDMFSCMCEAKLKPDEVTFV-GVLSACSHS 458 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~ 458 (660)
+..|+++.|+++.+.-. ++++. .-..|+.+-. -..+...|...-.+..+ +.||-..-. ....++.+.
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d 276 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRD 276 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhc
Confidence 99999999999998654 34432 1222222211 12345556655555554 567755333 334678999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH--H--HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEA--Y--ELALAMPNEANPVVWRTLLAASRLHGNTDLAEI 534 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 534 (660)
|++.++-.+++.+-+ ..|.+.++...+ +.+.|+.... . +-++.|. +.+..+..++..+....|++..|..
T Consensus 277 ~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 277 GNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred cchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHH
Confidence 999999999999955 456665554444 3566663222 1 1233444 4567788888888999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHhCC
Q 048281 535 AAQRVFQLEPGHCGNYVLMSNIYVAG-GKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 535 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 577 (660)
-.+.+....|.. ..|..|+++-... |+-.++...+-+..+.-
T Consensus 351 ~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 351 KAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 999999999965 6788899887655 99999999888776643
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00037 Score=50.82 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHG-NTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 544 (660)
+...|..+...+...|++++|+..|++... +.++..|..+..+|...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456788888888899999999998887654 446678899999999999 79999999999999887
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=0.00013 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.651 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 536 AQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 536 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.0072 Score=63.16 Aligned_cols=135 Identities=19% Similarity=0.118 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHHhc--cC---CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 048281 440 KLKPDEVTFVGVLSACSH--SG---FLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRA--------GQLNEAYELAL 505 (660)
Q Consensus 440 g~~p~~~~~~~ll~~~~~--~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 505 (660)
+.+.|...|..++.+... .+ +...|..+|+++.+ ..|+ ...|..+..+|... ++++.+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 456777888888887443 33 37789999999986 4555 34555544444322 23445555555
Q ss_pred hCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 506 AMP----NEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 506 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
+.. .+.++..+..+.-.....|++++|...++++++++| +...|..++.++...|+.++|...+++......
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 422 234567788887777788999999999999999999 578999999999999999999999999877654
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.0002 Score=52.07 Aligned_cols=58 Identities=24% Similarity=0.249 Sum_probs=29.8
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchH
Q 048281 493 RAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 493 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
..|++++|+++|+++.. +.+...+..++.+|.+.|++++|...++++...+|+++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 34555555555555432 23444555555555555555555555555555555544333
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.35 E-value=0.19 Score=49.62 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 514 VVWRTLLAA--SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 514 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
..-|.|..| +..+|++.++.-...-+.+..| ++.+|..+|-++....+++||..++..+
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344555443 5678888888887777788888 7888999999999999999999988875
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.039 Score=47.26 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-C---CCHHHH
Q 048281 441 LKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-E---ANPVVW 516 (660)
Q Consensus 441 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---~~~~~~ 516 (660)
+.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....++...|...++++-+ + ..+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4666666667888888999999999999998872 4556777888888888899999999988887543 2 223345
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..+.+++...|.+..|+..|+.++.--|+ +..-...+..+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56778889999999999999999998775 46667778889999998888776665544
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0028 Score=63.38 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=85.8
Q ss_pred CChhHHHHHHHHhHhcCChHHHHHHHccCCCC------CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHH
Q 048281 167 LDVYIGSALVNTYLKCQFMEEALKVFEELPLR------DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTG 240 (660)
Q Consensus 167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ 240 (660)
.+......+++.+....+++.+..++-+.... -..+..++++.|.+.|..+.++.+++.=...|+-||..|++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444555555555556666666665554321 123456888889999999999999988888899999999999
Q ss_pred HHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcC
Q 048281 241 VLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKG 283 (660)
Q Consensus 241 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 283 (660)
+|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999988888887766766666655555554
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.26 E-value=0.23 Score=48.96 Aligned_cols=446 Identities=11% Similarity=0.050 Sum_probs=222.0
Q ss_pred hccCChhHHHHHHHHHHHhCCC-CC----hhHHHHHHHHhHcCCChhHHHHHHccC-CCCCCcccHHHHHHHH--HcCCC
Q 048281 43 AHQTNLQKGQEIHSYMLRTGII-DS----PLSITSLINMYSKCCQMKYALFVFNNL-SCEPNVFTYNAMISGF--YSNDF 114 (660)
Q Consensus 43 ~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~li~~~--~~~~~ 114 (660)
.+.++..++..+|.++-+.--. |. ....+.++++|-.. +++.-...+.+. -..| ...|-.+..++ -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhh
Confidence 4667888888888887655321 11 23345677777643 333333322211 1112 33455555443 35677
Q ss_pred hhHHHHHHHHHHHC--CCCC------------CcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCC----CChhHHHHHH
Q 048281 115 AFKGLDFFNHMRQL--GVLP------------DKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLD----LDVYIGSALV 176 (660)
Q Consensus 115 ~~~a~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li 176 (660)
+.+|++.+..-... +..| |-.-=+..+..+...|++.+++.+++++...-++ -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 77887777666544 2222 1111233455566777777777777776654333 5666777666
Q ss_pred HHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC--CchhH
Q 048281 177 NTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMG--FFKNG 254 (660)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a 254 (660)
-++++.=-++--. .+...=...|--++-.|.+.=+.-++ ---..+.|-...+..++....-.. +..--
T Consensus 175 lmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~ 244 (549)
T PF07079_consen 175 LMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPL 244 (549)
T ss_pred HHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHH
Confidence 6655432222111 11111111233333333322111000 000112343333444443332221 22223
Q ss_pred HHHHHHHHHhCCCCCch-HHHHHHHHHHcCCCHHHHHHHHHhcC--------CCChhhHHHHHHHHHHcCChHHHHHHHH
Q 048281 255 RVVHGIVVKMGYDSGVP-VMNALIDMYGKGKCVGEALEIFEMME--------EKDIFSWNSIMTVHEQCGNHDGTLRLFD 325 (660)
Q Consensus 255 ~~~~~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 325 (660)
.+++..-...-+.|+.. +...|+....+ +.+++..+-+.+. +.=+.++..++....+.++..+|-+.+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33443334444445433 33344444443 3444444433332 2234567788888888888888888877
Q ss_pred HHhhcCCCCCHHHHHHH-------HHHHh-ccc---chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH---HHHHh
Q 048281 326 RMLSAGFQPDLVTFSTV-------LPACS-HLA---ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM---DMYTK 391 (660)
Q Consensus 326 ~m~~~g~~p~~~t~~~l-------l~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li---~~~~~ 391 (660)
-+.-. .|+...-..+ -+..+ .-. ++..-..+++.+...+++. ......|+ .-+-+
T Consensus 323 lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr---------qQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 323 LLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR---------QQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH---------HHHHHHHHHHHHHHHh
Confidence 66643 3433211111 11111 111 1222233444444444433 12222222 23344
Q ss_pred cCC-HHHHHHHHhcCC---CCCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--
Q 048281 392 CGS-MRDAQMVFTKMS---KKDVASWNIMI----LGYGM---DGQGKEALDMFSCMCEAKLKPDE----VTFVGVLSA-- 454 (660)
Q Consensus 392 ~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~-- 454 (660)
.|. -++|.++++.+. ..|...-|.+. ..|.+ .....+-+.+-+-..+.|+.|-. ..-+.|..|
T Consensus 392 ~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred cCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 454 777888887765 23444433322 22322 22344445555555667777643 344444443
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRT 518 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 518 (660)
+...|++.++.-.-..+. .+.|++.+|..+.-++....++++|.+++..++ |+..++++
T Consensus 472 Lysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 456788888866555553 578899999988888888899999999998887 35555554
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.25 E-value=0.024 Score=47.80 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG 459 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 459 (660)
-.+...+...|++++|.++|+.+. ..+..-|-.|..++-..|++++|+..|....... +-|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 344555667788888888887655 2355677778888888888888888888887764 345566777777788888
Q ss_pred CHHHHHHHHHHhHHhcC
Q 048281 460 FLSQGREFLPLMESRYG 476 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~ 476 (660)
+.+.|.+.|+.++...+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 88888888887776433
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.24 E-value=0.0014 Score=64.85 Aligned_cols=63 Identities=13% Similarity=-0.042 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 513 PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN---YVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
...|+.+..+|...|++++|+..|+++++++|+++.. |.+++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554432 45555555555555555555555444
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.23 E-value=0.0032 Score=49.05 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=64.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCC--------chhHHHHHHHHHHhCCCCCchHHH
Q 048281 204 NAMVNGYAQIGEFHKALEVFRRMSKEGI-WMSRFTVTGVLSALIMMGF--------FKNGRVVHGIVVKMGYDSGVPVMN 274 (660)
Q Consensus 204 ~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 274 (660)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3446666677999999999999999999 8999999999998876642 334567888888889999999999
Q ss_pred HHHHHHHc
Q 048281 275 ALIDMYGK 282 (660)
Q Consensus 275 ~li~~~~~ 282 (660)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887765
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.20 E-value=0.00062 Score=44.14 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSN 555 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 555 (660)
.+|..+..+|...|++++|+++++++++.+|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999988887764
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.039 Score=53.32 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=10.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHH
Q 048281 450 GVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 450 ~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
.+...+.+.|++++|.++|+++..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444444455555555544443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.17 E-value=0.0037 Score=50.73 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=58.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 048281 487 VIDMLGRAGQLNEAYELALAMPNE----A-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG---HCGNYVLMSNIYV 558 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 558 (660)
+..++-..|+.++|+.+|++.... + -...+..+.+.+...|++++|+.++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344556667777777777664331 1 1235556777788888888888888887777676 5555566677777
Q ss_pred hCCChHHHHHHHHHH
Q 048281 559 AGGKYEEVLDIRHTM 573 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~ 573 (660)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888887776544
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.15 E-value=0.12 Score=48.47 Aligned_cols=174 Identities=8% Similarity=-0.032 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC--CC-Hh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048281 384 ALMDMYTKCGSMRDAQMVFTKMSK--KD-VA---SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH 457 (660)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 457 (660)
.....+.+.|++++|.+.|+.+.. |+ .. ..-.++.+|.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344555667888888888887763 21 11 2234556777788888888888888775222122233333333321
Q ss_pred --c---------------CC---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 048281 458 --S---------------GF---LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWR 517 (660)
Q Consensus 458 --~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 517 (660)
. .+ ..+|...|+.+++ -|=...-..+|...+..+...- ..--.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHH-HHHHH
Confidence 0 01 1233344444443 2222233344444333332110 00111
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPGHC---GNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
.+..-|.+.|.+..|..-++.+++.-|+.+ ++...+..+|...|..++|.+..+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345668899999999999999999877654 567788899999999999999887664
No 195
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0013 Score=48.44 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=53.7
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHH
Q 048281 488 IDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYV 551 (660)
Q Consensus 488 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 551 (660)
-..|.+.+++++|.++++.+.. +.++..|......+...|++++|...++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 3567889999999999998754 456778888999999999999999999999999998765443
No 196
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.13 E-value=0.0049 Score=59.27 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=100.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR-AGQLNEAYELALAMPN--EANPVVWRTLLAA 522 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 522 (660)
.+|..++..+-+.+..+.|..+|.++.+ .-..+..+|...+.+-.+ .++.+.|.++|+.... ..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888888899999999999986 333455666666666444 5666679999998654 5678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHC---GNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+...|+.+.|..+|++++..-|.+. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999766543 46777788788899999999999888653
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.0036 Score=59.02 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 048281 484 YTCVIDMLGRAGQLNEAYELALAMPN-EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH---CGNYVLMSN 555 (660)
Q Consensus 484 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 555 (660)
|...+..+.+.|++++|...|+.+.. .|+ +..+.-++.+|...|++++|...|+++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555554332 122 2344455555666666666666666666555543 334444555
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 048281 556 IYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 556 ~~~~~g~~~~a~~~~~~~~~ 575 (660)
++...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666554
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.017 Score=46.86 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 048281 415 IMILGYGMDGQGKEALDMFSCMCEAKLKPDE--VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDML 491 (660)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 491 (660)
.+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677889999999999999988866553 3566677788889999999999998876422111 223333445567
Q ss_pred hhcCCHHHHHHHHHhC
Q 048281 492 GRAGQLNEAYELALAM 507 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~ 507 (660)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7888988888877543
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.07 E-value=0.18 Score=51.71 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHcc
Q 048281 157 HGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEE 194 (660)
Q Consensus 157 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 194 (660)
++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 455666666666543 33455567778888777643
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.54 Score=49.48 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=85.8
Q ss_pred CchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 048281 269 GVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSH 348 (660)
Q Consensus 269 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (660)
...+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+. .+.-|..+..+|.+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 334455556667778999999999999998999999888999999999998777766554 24567778889999
Q ss_pred ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 048281 349 LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVF 402 (660)
Q Consensus 349 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 402 (660)
.|+.++|.+++.++.. +.-.+.+|.+.|++.+|.++-
T Consensus 757 ~~n~~EA~KYiprv~~-----------------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGG-----------------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCC-----------------hHHHHHHHHHhccHHHHHHHH
Confidence 9999999888765421 114678899999988887764
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.0038 Score=59.87 Aligned_cols=129 Identities=15% Similarity=0.030 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C-CCCH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLME---SRYGVVPT-IEHYTCVIDMLGRAGQLNEAYELALAMP-------N-EANP 513 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~ 513 (660)
..|..|...|.-.|+++.|+..++.-. +.+|-+.. ...+..|.+++.-.|+++.|.+.|+... . ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666666667789999988776532 22444332 3678888999999999999999887532 1 1334
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQL------EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
.+..+|..+|.-..++++|+..+.+=+.+ ......++..|+.+|...|..+.|..+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56677888888888899999888775543 12334678899999999999999988776553
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0061 Score=58.98 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 513 PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+++.+..+|.+.+++..|++...++++++|+|.-....-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567788888999999999999999999999999999999999999999999999999999873
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.021 Score=48.80 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=93.4
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 469 PLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN---EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
++..+.....|++..-..|..++.+.|+..+|...|++... ..|......+.++....++...|...++.+.+-.|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 34444456778988889999999999999999999998654 468888899999999999999999999999998774
Q ss_pred --CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 546 --HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 546 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.|.....+++.|..+|++++|...|+.....
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 5677889999999999999999999988764
No 204
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.0088 Score=52.89 Aligned_cols=97 Identities=19% Similarity=0.256 Sum_probs=79.2
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 048281 399 QMVFTKM--SKKDVASWNIMILGYGMD-----GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS------------- 458 (660)
Q Consensus 399 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------- 458 (660)
...|+.. ..++-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 466788888888888754 67777888899999999999999999999988653
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 459 ---GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 459 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
.+-+-|++++++|.. +|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234668999999998 5999999999999999987775
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.97 E-value=0.4 Score=46.37 Aligned_cols=105 Identities=8% Similarity=0.121 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----CCHH-HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCC
Q 048281 303 SWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQ-----PDLV-TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDI 376 (660)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 376 (660)
.+..+...+.+.|++++|.++|++....... .+.. .|...+-.+...||+..|...++......+... ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~----~s 232 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA----SS 232 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST----TS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC----Cc
Confidence 3445667777788888888888777654322 1221 222333345556788888888777654432221 11
Q ss_pred cchhHHHHHHHHHHh--cCCHHHHHHHHhcCCCCCHh
Q 048281 377 DDVFMNNALMDMYTK--CGSMRDAQMVFTKMSKKDVA 411 (660)
Q Consensus 377 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~ 411 (660)
....+...|+.+|-. ...+..|..-|+.+.+.|.-
T Consensus 233 ~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 233 REYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 224566667777754 45677788888887765543
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.3 Score=48.09 Aligned_cols=165 Identities=18% Similarity=0.095 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKK-------DVASWNIMILGYGM---DGQGKEALDMFSCMCEAKLKPDEVTF 448 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 448 (660)
..+.-.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.||
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344456666799999999999999998743 12222234456666 89999999999997776678888888
Q ss_pred HHHHHHHhc---------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----
Q 048281 449 VGVLSACSH---------SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLN----EAYELA---LA-M---- 507 (660)
Q Consensus 449 ~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---- 507 (660)
..+...|-. ....++|+..|.+.- .+.|+...--.++..+...|... +..++- .. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 887765522 234778888888764 45566544333444444444322 222222 11 1
Q ss_pred CC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 508 PN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 508 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.. ..+--.+.+++.++.-.|++++|.+.++++.++.|+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 01 2344456788999999999999999999999998765
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.12 Score=46.90 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHH-----HH
Q 048281 202 LWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMN-----AL 276 (660)
Q Consensus 202 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~l 276 (660)
..+.++..+.-.|.+.-.+..+.+.++...+.++.....+.+...+.|+.+.|...++...+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4466777777788889999999999998878888888999999999999999999999887664344433333 33
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 048281 277 IDMYGKGKCVGEALEIFEMMEEK---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVL 343 (660)
Q Consensus 277 i~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 343 (660)
...|.-++++..|...|.++... |+..-|.-.-...-.|+..+|++.++.|.+. .|...+-.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 44566678888999999888764 4555555444455568999999999999976 55555444443
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.84 E-value=0.0021 Score=48.07 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQL----EPG---HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777778888888888888888887764 222 235677888888889999999888887643
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.79 E-value=0.47 Score=44.52 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHH----HHHHHHHHhcccchHHHHHHHHHHHHhCccC
Q 048281 301 IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVT----FSTVLPACSHLAALMHGRQIHGYIVVNGLAK 369 (660)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 369 (660)
...+-.....+...|++++|.+.|+++... .|+... ...+..++-+.++++.|...++..++..+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 333334455556678888888888887765 333321 1233445566666666666666666654443
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.26 Score=44.93 Aligned_cols=136 Identities=12% Similarity=0.013 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----CCCCChHHHHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRY----GVVPTIEHYTCV 487 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l 487 (660)
.-+.++.++.-.|.+.-.+.++++.++...+-++.....|.+.-.+.||.+.|..+|+...+.. ++.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666677788888888888886655566677777777788888888888888665531 223333333444
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 488 IDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 488 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
...|.-++++.+|...+.+++. +.++...|+-.-+..-.|+...|++..+.+.+..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4456667778888888877665 33455555555555556777778888888877777643
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.75 E-value=0.089 Score=47.94 Aligned_cols=168 Identities=14% Similarity=0.042 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMSK--K----DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDE--VTFVGVL 452 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll 452 (660)
.+-.....+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...+++.++. -|+. ..+...+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHH
Confidence 333455566678888888888887762 2 1235556677788888888888888887765 3332 2222222
Q ss_pred HHHhcc-------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 048281 453 SACSHS-------------GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTL 519 (660)
Q Consensus 453 ~~~~~~-------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 519 (660)
.+.+.. +...+|...|+. ++.-|=......+|...+..+... -..--..+
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~~~-la~~e~~i 147 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELRNR-LAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 222211 111233333333 333344444445554444433211 00111224
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhCCChHHHH
Q 048281 520 LAASRLHGNTDLAEIAAQRVFQLEPGHC---GNYVLMSNIYVAGGKYEEVL 567 (660)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~ 567 (660)
...|.+.|.+..|..-++.+++.-|+.+ .+...++..|.+.|..+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 5678889999999999999999988864 45667888899999887544
No 212
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.74 E-value=0.0068 Score=53.59 Aligned_cols=36 Identities=11% Similarity=-0.033 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 048281 149 AVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQF 184 (660)
Q Consensus 149 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 184 (660)
+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345677777777777777777777777777755543
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.028 Score=53.08 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=65.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHH
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN-EA----NPVVWRTLLA 521 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~ 521 (660)
|...+....+.|++++|...|+.+++.+.-.+ ....+..+..+|...|++++|...|+.+.. .| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44333333445677777777777766321111 124556677777777777777777777643 12 2445556677
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 522 ASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
.+...|+.+.|...|+++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 78888999999999999999888764
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.70 E-value=0.65 Score=44.99 Aligned_cols=245 Identities=16% Similarity=0.111 Sum_probs=119.6
Q ss_pred cCCchhHHHHHHHHHHhCCCCCchH--HHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChHHHHH
Q 048281 248 MGFFKNGRVVHGIVVKMGYDSGVPV--MNALIDMYGKGKCVGEALEIFEMMEE--K-DIFSWNSIMTVHEQCGNHDGTLR 322 (660)
Q Consensus 248 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~ 322 (660)
.|+.+.|.+-|+.|... |.... ...|.-.--+.|..+.|..+-+..-. | -...+.+.+...|..|+++.|++
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 35555555555555432 11111 11122222355667777666655443 2 23467778888888899999888
Q ss_pred HHHHHhhcC-CCCCHH--HHHHHHHHHhc---ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHH
Q 048281 323 LFDRMLSAG-FQPDLV--TFSTVLPACSH---LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMR 396 (660)
Q Consensus 323 ~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 396 (660)
+++.-.+.. +.++.. .-..++.+-+. ..+...+...-....+..... ...-..-..++.+.|++.
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl---------vPaav~AAralf~d~~~r 280 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL---------VPAAVVAARALFRDGNLR 280 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc---------chHHHHHHHHHHhccchh
Confidence 888766543 344443 22233332211 123444444444444433222 222233345566667777
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048281 397 DAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEA-KLKPDE-VTFVGVLSACSHSGFLSQGREFLPLMESR 474 (660)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 474 (660)
++-.+++.+-+.....--..+..+.+.|+ .++.-+++.... .++||. .....+..+-...|++..|..--+...
T Consensus 281 Kg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~-- 356 (531)
T COG3898 281 KGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA-- 356 (531)
T ss_pred hhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--
Confidence 77666666653222211112222233333 333333333221 134443 344444555556666666655444443
Q ss_pred cCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCCC
Q 048281 475 YGVVPTIEHYTCVIDMLGR-AGQLNEAYELALAMPN 509 (660)
Q Consensus 475 ~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 509 (660)
...|....|..|.+.-.. .|+-.++...+.+...
T Consensus 357 -r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 -REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 345666666666665433 3666666666555443
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.67 E-value=1.1 Score=46.91 Aligned_cols=151 Identities=10% Similarity=0.072 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC-----CchhHHHHHHHHHhCCChhHHHHH
Q 048281 148 MAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR-----DVVLWNAMVNGYAQIGEFHKALEV 222 (660)
Q Consensus 148 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~ 222 (660)
|++++|++++-++.+.. .-|..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655444332 2244455555555555555432211 123455555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh
Q 048281 223 FRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIF 302 (660)
Q Consensus 223 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 302 (660)
|..-... ...+.++.+..++++-+.+. ..++.+....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 5443110 11222222222222222211 1234444555555666666666666555554433331
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 048281 303 SWNSIMTVHEQCGNHDGTLRLFDR 326 (660)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~~~~~ 326 (660)
+.+..|...+++.+|.++-+.
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh
Confidence 223344455555555555443
No 216
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=96.60 E-value=0.0025 Score=51.47 Aligned_cols=60 Identities=37% Similarity=0.645 Sum_probs=45.5
Q ss_pred cEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCcccCceeeccCCChhhh--------hHhhhHHHHHhhc
Q 048281 583 GCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGDCCAGTLFDSDSTASGF--------EKHRLYLEEVIAK 654 (660)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 654 (660)
|++|..+ +.|.+++.+||+. .+..++...||.|++.....+...++. +..+..++||||-
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 5778776 9999999999988 344666778999988665555444433 6789999999974
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.87 Score=44.57 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=55.3
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhc
Q 048281 419 GYGMDGQGKEALDMFSCMCEA---KLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRA 494 (660)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 494 (660)
-..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.--++..+ +.+. +..|..-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHH
Confidence 345678888888888887753 2455555666666677778888888877777654 2222 12333334455566
Q ss_pred CCHHHHHHHHHhC
Q 048281 495 GQLNEAYELALAM 507 (660)
Q Consensus 495 g~~~~A~~~~~~~ 507 (660)
++|++|++-+++.
T Consensus 335 e~~e~AV~d~~~a 347 (486)
T KOG0550|consen 335 EKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888877764
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.54 E-value=0.0081 Score=51.55 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCC
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMR-----QQNVRKNP 582 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~ 582 (660)
.+...++..+...|+++.|...+++++..+|-+-..|..+..+|...|+..+|.+.|+++. +.|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788899999999999999999999999999999999999999999999998873 45776543
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.036 Score=53.80 Aligned_cols=137 Identities=16% Similarity=0.007 Sum_probs=97.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
.+.|.+.|++..|...|++.+.. |. +.+.-+.++...... .-..++..|.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777777777777776642 00 111111122211111 122367778888999999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH-HHHHHHH
Q 048281 497 LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV-LDIRHTM 573 (660)
Q Consensus 497 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~ 573 (660)
+.+|++...+... ++++-..---..+|...|+++.|+..|+++++++|+|..+-..|+.+--+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888654 567777777889999999999999999999999999988888888877766665554 7888888
Q ss_pred Hh
Q 048281 574 RQ 575 (660)
Q Consensus 574 ~~ 575 (660)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 44
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.48 E-value=0.19 Score=40.55 Aligned_cols=140 Identities=12% Similarity=0.095 Sum_probs=87.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEA 500 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 500 (660)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+.+- .....++.+|++.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457778888888887763 35556666666666666666777777777553222111 122334444444443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048281 501 YELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVR 579 (660)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 579 (660)
+..-....+.+....|+-+.-.+++..+.+-+..+|+....++.+|.+.|...++.+++++.-+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445556778888999999999999988655557888999999999999999999999999998874
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.43 E-value=1.1 Score=44.32 Aligned_cols=134 Identities=10% Similarity=0.020 Sum_probs=103.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAK-LKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI 488 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 488 (660)
...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++..++. |+...|..+|+.-.. .++.+..--+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 4567777777777777889999999999988 67788888888886664 788899999987665 3333333445667
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 489 DMLGRAGQLNEAYELALAMPN--EAN--PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.-+.+.++-+.|..+|+.... ..+ ..+|..++..-..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 778889999999999986443 122 4689999998889999999999989988888864
No 222
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=1.5 Score=45.85 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 048281 420 YGMDGQGKEALDMFSCMCE 438 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~ 438 (660)
+.+.|++-+|-+++.+|.+
T Consensus 933 ~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 933 DRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hhhcccchhHHHHHHHHhH
Confidence 4445555555566655543
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.2 Score=47.05 Aligned_cols=104 Identities=17% Similarity=-0.056 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCC--CCCHHHH
Q 048281 442 KPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG---QLNEAYELALAMPN--EANPVVW 516 (660)
Q Consensus 442 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~ 516 (660)
+-|...|..|...|...|+.+.|...|....+ --.++...+..+..++..+. ...++..+|+++.. +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44566777777777777777777777777766 33445556666666554432 34567777777544 3455666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
.-|...+...|++.+|...++.|++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677788888888888888888888876653
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.39 E-value=0.07 Score=44.26 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=61.6
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhC
Q 048281 489 DMLGRAGQLNEAYELALAMPNE-----ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG---NYVLMSNIYVAG 560 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 560 (660)
....+.|++++|.+.|+.+..+ -....-..|+.+|.+.|++++|...+++.++++|.++. ++...+-++.++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3345788888998888887652 23345667888999999999999999999999998764 333444444444
Q ss_pred CC---------------hHHHHHHHHHHHhC
Q 048281 561 GK---------------YEEVLDIRHTMRQQ 576 (660)
Q Consensus 561 g~---------------~~~a~~~~~~~~~~ 576 (660)
.. ..+|..-|+.+.++
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 33 55666666666553
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=1.8 Score=45.90 Aligned_cols=326 Identities=10% Similarity=0.054 Sum_probs=179.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHH-hCC-CCCchHHHHHHHHHHc
Q 048281 205 AMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVK-MGY-DSGVPVMNALIDMYGK 282 (660)
Q Consensus 205 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~-~~~~~~~~~li~~~~~ 282 (660)
.+|.-+...+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+ .+. ......|..+....-.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 45666666777777777766664322111 444554444444443211 1122222211 111 1233455666666667
Q ss_pred CCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHH
Q 048281 283 GKCVGEALEIFEMMEEK--------DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMH 354 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 354 (660)
+|+.+-|..+++.=+.. +..-+...+.-..+.|+.+-...++-.|... .+...|...+ .+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchh
Confidence 78888888877653321 2233455566667777777777777666543 2222232222 12234
Q ss_pred HHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHh--cC-----CCCCHhHHHHHHHHHHhcCChH
Q 048281 355 GRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFT--KM-----SKKDVASWNIMILGYGMDGQGK 427 (660)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~g~~~ 427 (660)
|..++....+..-... +-+.|-. ++...+...|. .. ..+-..........+.+.....
T Consensus 591 a~~lY~~~~r~~~~~~--------------l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s 655 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRAT--------------LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKS 655 (829)
T ss_pred hhHHHHHHHHhhchhh--------------hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhh
Confidence 4444444443211110 1111211 11111111111 00 0111122223333444433311
Q ss_pred ---H-------HHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 428 ---E-------ALDMFSCMCE-AKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 428 ---~-------A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
+ -+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..++
T Consensus 656 ~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 656 FEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhh
Confidence 1 1222222222 2334445566667777888899999988877663 3888999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 497 LNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 497 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
|++-+++-+... .+.-|.-...+|.+.|+.++|.+.+-++-. +.-...+|.+.|++.+|.++--+
T Consensus 731 weeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 731 WEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 999888877655 356677788999999999999888876422 22578889999999999887544
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.23 Score=46.39 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=87.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCCh
Q 048281 453 SACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRT---LLAASRLHGNT 529 (660)
Q Consensus 453 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~ 529 (660)
......|+..+|...|+..... .+-+...--.|+.+|...|+.+.|..++..++.+....-|.. -+..+.+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3456778899999999988763 334456777889999999999999999999887433333333 33444444444
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 530 DLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 530 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.+...+-+ -...+|+|...-..++..|...|+.++|.+.+-.+.++
T Consensus 220 ~~~~~l~~-~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQR-RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44433333 34458999999999999999999999999988777554
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.32 E-value=0.032 Score=44.66 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=72.6
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCC---cchHHHHHHHHHhCCCh
Q 048281 490 MLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE-PGH---CGNYVLMSNIYVAGGKY 563 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 563 (660)
+++..|+++.|++.|.+... +.....||.-..+++-.|+.++|+.-+++++++. |.. ...|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 56778899999998887543 5577889999999999999999999999999983 332 23577788889999999
Q ss_pred HHHHHHHHHHHhCCC
Q 048281 564 EEVLDIRHTMRQQNV 578 (660)
Q Consensus 564 ~~a~~~~~~~~~~~~ 578 (660)
+.|..-|....+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998877664
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.22 E-value=0.022 Score=54.94 Aligned_cols=133 Identities=9% Similarity=-0.036 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC-
Q 048281 338 TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS-------KKD- 409 (660)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~- 409 (660)
.|..+-..|.-.|+++.+...++.-....-+.... ......+..|.+++.-.|+++.|.+.|.... .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 34445555556788888888776543321111000 0014677788889999999999988887532 222
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 410 -VASWNIMILGYGMDGQGKEALDMFSCMCEA-----KLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 410 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
..+..+|...|.-..++++|+.++.+-..- ...-....+-+|..++...|..++|+.+.+...+
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 235556777887778888998887765431 1122345677888888888998988877766554
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.18 E-value=0.073 Score=43.71 Aligned_cols=97 Identities=10% Similarity=0.190 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
..++.+++.++++.|+++....+.+..-..++. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445566666666666666666655543211110 0000000 111234678888888888888888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYTCVIDML 491 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 491 (660)
|++..|+++.+...+.++++.+..+|..|++-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888888877778887777643
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.98 E-value=0.0099 Score=44.41 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN--------EAN-PVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
.+++.+...|...|++++|++.|++... .|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666666666665554321 122 456777777888888888888888877654
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=95.95 E-value=0.12 Score=51.78 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 511 ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 511 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.|+.....+..+....++.+.|...|+++..++|+.+.+|...+++..-.|+.++|.+.+++..+
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44555555555555555555555556655555565555555555555555555555555555433
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.82 E-value=1.4 Score=40.05 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=24.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHhcccchHHHHHHHHHHHHh
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSAGFQPD--LVTFSTVLPACSHLAALMHGRQIHGYIVVN 365 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 365 (660)
...+...|++.+|.+.|+.+........ ......+..++-+.|+++.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555566655555554311110 112223334444445555555444444443
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.71 E-value=1.7 Score=40.17 Aligned_cols=196 Identities=16% Similarity=0.089 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS-----KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLS 453 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 453 (660)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566666777777777776666543 23445566666677777778888888888776533331 22222222
Q ss_pred -HHhccCCHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHHcC
Q 048281 454 -ACSHSGFLSQGREFLPLMESRYGV--VPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EA-NPVVWRTLLAASRLHG 527 (660)
Q Consensus 454 -~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~g 527 (660)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+... +. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 67788888888888888744 121 12334444455556778888888888877554 23 3567778888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 528 NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+.+.|...+.......|.....+..++..+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888999998888888875566677777777777788888888877654
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=3.9 Score=44.04 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=96.9
Q ss_pred CchhhHHHHHHHhhccCChhHHHHH----HHHHHHhCC------------CCChhHHHHHHHHhHcCCChhHHHHHHccC
Q 048281 30 FTLATCIASLQLCAHQTNLQKGQEI----HSYMLRTGI------------IDSPLSITSLINMYSKCCQMKYALFVFNNL 93 (660)
Q Consensus 30 ~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~g~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 93 (660)
.+..+.++++.++...+.+-.-.-+ .+-+...+. ....-....-++.+.+..-++-|..+-+..
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~ 360 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ 360 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 5555667777777766654332222 222333330 112233455677777888888888877632
Q ss_pred CCCCCcccHHHH----HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCCh
Q 048281 94 SCEPNVFTYNAM----ISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDV 169 (660)
Q Consensus 94 ~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 169 (660)
.. +...-..+ ..-+.+.|++++|...|-+-... +.| ..++.-+.....+..-..+++.+.+.|+. +.
T Consensus 361 ~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~ 431 (933)
T KOG2114|consen 361 HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NS 431 (933)
T ss_pred CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cc
Confidence 22 22222222 34455678899888888766532 333 34566666666777777788888888875 34
Q ss_pred hHHHHHHHHhHhcCChHHHHHHHccCC
Q 048281 170 YIGSALVNTYLKCQFMEEALKVFEELP 196 (660)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 196 (660)
..-..|+.+|.+.++.++-.++.+...
T Consensus 432 dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 432 DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 444678888988888888887776665
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.54 E-value=0.83 Score=47.61 Aligned_cols=116 Identities=15% Similarity=0.054 Sum_probs=73.3
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHH
Q 048281 458 SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN------EANPVVWRTLLAASRLHGNTDL 531 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~ 531 (660)
..+.+.|.+++..+.++ .+-+....-.-.+.+...|++++|++.|++... +-....+--+...+....++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34667777777777653 322333333344556677788888888876442 1223345556667777888888
Q ss_pred HHHHHHHHHhcCCCCcchHH-HHHHHHHhCCCh-------HHHHHHHHHHHh
Q 048281 532 AEIAAQRVFQLEPGHCGNYV-LMSNIYVAGGKY-------EEVLDIRHTMRQ 575 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~~~~ 575 (660)
|...+.++.+....+...|. ..+-++...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888887665544444 344556677777 777788777643
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.47 E-value=0.18 Score=43.17 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES----RYGVVPTIEH 483 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 483 (660)
....++..+...|++++|+.+++.+.... +-|...|..+|.++...|+...|.++|+.+.+ .+|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445566666777777777777777653 44566777777777777777777777766543 3466676654
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.46 E-value=3.8 Score=42.47 Aligned_cols=419 Identities=12% Similarity=0.059 Sum_probs=221.0
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 048281 98 NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT-FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALV 176 (660)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 176 (660)
+...|+.+|.---+....+.+..++..+... -|...- |......=.+.|..+.+.++|++.+.. ++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4445666666555555556666677766643 344332 233333345667888888888887764 556666666666
Q ss_pred HHhH-hcCChHHHHHHHccCCC------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc--
Q 048281 177 NTYL-KCQFMEEALKVFEELPL------RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIM-- 247 (660)
Q Consensus 177 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-- 247 (660)
..+. ..|+.+.....|+.... .+...|...|.--..++++.....++++.++....-=...|.........
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence 5544 44667777777776553 25567888888888888889999998888763211101111111111111
Q ss_pred ---cCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCC-HHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHH
Q 048281 248 ---MGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKC-VGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRL 323 (660)
Q Consensus 248 ---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 323 (660)
....+.+.++-....... .-...+. .+.-....+.+..+. +..+++...
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~~~~~ 253 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPS--------------KSLTEEKTI 253 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCcc--------------chhhHHHHH
Confidence 011111111111110000 0000000 011111111111110 001111111
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 048281 324 FDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFT 403 (660)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 403 (660)
..+.... -..+| -........+..++.-++....+- ..-..+....|...++--.+.|+.+.+.-+|+
T Consensus 254 l~~~~~~----~~~~~-------~~s~~~~~kr~~fE~~IkrpYfhv-kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~e 321 (577)
T KOG1258|consen 254 LKRIVSI----HEKVY-------QKSEEEEEKRWGFEEGIKRPYFHV-KPLDQAQLKNWRYYLDFEITLGDFSRVFILFE 321 (577)
T ss_pred HHHHHHH----HHHHH-------HhhHhHHHHHHhhhhhcccccccc-CcccHHHHHHHHHHhhhhhhcccHHHHHHHHH
Confidence 1110000 00000 000111111112222222111000 00012235677788888888999999999998
Q ss_pred cCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 048281 404 KMSKK---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT 480 (660)
Q Consensus 404 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 480 (660)
+..-| -...|-..+.-....|+.+-|..++....+-.++-.+.+-..-..-+-..|+.+.|..+++.+.++ . |+
T Consensus 322 rcli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg 398 (577)
T KOG1258|consen 322 RCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PG 398 (577)
T ss_pred HHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-Cc
Confidence 87744 334566666666666888888888887776544333333222222345678999999999999884 4 55
Q ss_pred h-HHHHHHHHHHhhcCCHHHHH---HHHHhCCC-CCCHHHHHHHH----H-HHHHcCChHHHHHHHHHHHhcCCCCcchH
Q 048281 481 I-EHYTCVIDMLGRAGQLNEAY---ELALAMPN-EANPVVWRTLL----A-ASRLHGNTDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 481 ~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
. ..-..-+....+.|..+.+. .++..... ..+..+...+. + .+...++.+.|..++.++.+..|++...|
T Consensus 399 ~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~ 478 (577)
T KOG1258|consen 399 LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLY 478 (577)
T ss_pred hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHH
Confidence 3 33334456667888888888 55544332 22222222222 1 24456889999999999999999998889
Q ss_pred HHHHHHHHhCC
Q 048281 551 VLMSNIYVAGG 561 (660)
Q Consensus 551 ~~l~~~~~~~g 561 (660)
..+.+.....+
T Consensus 479 ~~~~~~~~~~~ 489 (577)
T KOG1258|consen 479 LELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhCC
Confidence 88888877665
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.46 E-value=0.031 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.+|..++.+|...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888888888899999998888888863
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.45 E-value=0.042 Score=32.91 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777888888888888888888888888864
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.37 E-value=0.093 Score=52.35 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANP----VVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
+...++.+..+|.+.|++++|+..|++... .|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666666666666666666666332 3432 24667777777777777777777777665
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.30 E-value=0.91 Score=45.66 Aligned_cols=144 Identities=12% Similarity=0.065 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHh---------ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 048281 426 GKEALDMFSCMCE-AKLKPDE-VTFVGVLSACS---------HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA 494 (660)
Q Consensus 426 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 494 (660)
.+.|+.+|.+... ..+.|+- ..|..+..++. ...+..+|.+.-+...+ --+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567778888772 2245553 33333332221 12345567777777765 3445677778888888888
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHH--HHHhCCChHHHHHHH
Q 048281 495 GQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSN--IYVAGGKYEEVLDIR 570 (660)
Q Consensus 495 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~ 570 (660)
|+++.|...|++... +....+|......+...|+.++|.+.++++++++|....+-..-.+ .|+. ..+++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 889999999998654 4456688888888888999999999999999999986544333223 4444 4578888877
Q ss_pred HH
Q 048281 571 HT 572 (660)
Q Consensus 571 ~~ 572 (660)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 54
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=2.2 Score=38.72 Aligned_cols=201 Identities=12% Similarity=0.025 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--HhHHHH
Q 048281 338 TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKD--VASWNI 415 (660)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 415 (660)
.|.....++....+++++...+....+- .+.+ ...|. ....++.|.-+.+++.+-+ +..|+.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnn--------rslfh-------AAKayEqaamLake~~klsEvvdl~eK 96 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN--------RSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEK 96 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc--------ccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444445566667777777655555422 1111 11111 1222344444444444322 234556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----CCCChHHHHHHHHHH
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYG----VVPTIEHYTCVIDML 491 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 491 (660)
-...|..+|.++.|-..+++.-+. ...-++++|+++|++...-.. .+.-...+....+.|
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 677788888888777766665431 111234444444444432100 111123455566677
Q ss_pred hhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCcchHHHHHHHHHh
Q 048281 492 GRAGQLNEAYELALAMPN-------EANP-VVWRTLLAASRLHGNTDLAEIAAQRVFQL----EPGHCGNYVLMSNIYVA 559 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~ 559 (660)
.+..++++|-..+.+-.. -++. ..+-+.+-.+....++..|++.++..-+. .|++..+...|+..| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 888888887776654321 1232 23455555666677899999999886553 455666677777766 5
Q ss_pred CCChHHHHHHHH
Q 048281 560 GGKYEEVLDIRH 571 (660)
Q Consensus 560 ~g~~~~a~~~~~ 571 (660)
.|+.+++.+++.
T Consensus 240 ~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 EGDIEEIKKVLS 251 (308)
T ss_pred cCCHHHHHHHHc
Confidence 678888877654
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1.8 Score=40.70 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=104.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
.......|+..+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.+ --.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 345678899999999999998763 233456667888999999999999999987542 111112222334566666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhCCChHHH
Q 048281 497 LNEAYELALAMPNEA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE--PGHCGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 497 ~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a 566 (660)
..+...+-.+....| |...-..+...+...|+.+.|...+-.+++.+ -.+...-..+..++.-.|.-+.+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 666666665555444 67777888899999999999998888877753 34566777888888877755544
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.19 E-value=7.1 Score=43.99 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHcCC--CHHHHHHHHHhcC
Q 048281 271 PVMNALIDMYGKGK--CVGEALEIFEMME 297 (660)
Q Consensus 271 ~~~~~li~~~~~~~--~~~~A~~~~~~~~ 297 (660)
.....+|..|.+.+ .++.|+....++.
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33445666666665 4555655555544
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=0.23 Score=45.92 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=31.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQLEPGH---CGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
|+.++...|+++.|...|..+.+-.|++ |+.+.-|+.+..+.|+.++|...++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4555555555555555555555543332 34555555566666666666666665544
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=95.08 E-value=0.54 Score=40.10 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=42.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE 499 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 499 (660)
+.+.|++++|..+|+-+...+ .-|..-+..|..+|-..+++++|...|..... .. .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHH
Confidence 345566666666666555432 12233333444444455566666666655543 11 2233333344555555566555
Q ss_pred HHHHHHhCCC
Q 048281 500 AYELALAMPN 509 (660)
Q Consensus 500 A~~~~~~~~~ 509 (660)
|..-|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.98 E-value=6.5 Score=44.29 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=48.1
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHhcccchHHH
Q 048281 278 DMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVT--FSTVLPACSHLAALMHG 355 (660)
Q Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 355 (660)
-+|.++|+.++|.+.+ ...|+|.+|+.+-.+|... -|... -..|..-+...+.+-+|
T Consensus 960 l~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 960 LMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 3455566666665544 3467777777777766531 12211 13444455555555555
Q ss_pred HHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048281 356 RQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS 406 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 406 (660)
-++...... -..-.+..|++...+++|.++-....
T Consensus 1019 a~il~e~~s----------------d~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1019 AKILLEYLS----------------DPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhc----------------CHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 554443311 11234455666667777776655444
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.86 E-value=0.28 Score=45.15 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=84.4
Q ss_pred HHHHHhcCC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----------
Q 048281 398 AQMVFTKMS--KKDVASWNIMILGYGMD-----GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG----------- 459 (660)
Q Consensus 398 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------- 459 (660)
.++.|.... ++|-.+|-+++..+... +.++-....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 66888888888887654 456777778999999999999999999999876543
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhCC
Q 048281 460 -----FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQL-NEAYELALAMP 508 (660)
Q Consensus 460 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 508 (660)
.-+-++.++++|.. +|+.||..+-..|++++++.+.. .+..++.--|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 22347889999998 69999999999999999998864 33444444443
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.60 E-value=0.63 Score=47.76 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=85.2
Q ss_pred HHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 418 LGYGMDGQGKEALDMFSCMC-EAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
....-.++++++.++.+.-. -..+ | ..-...++.-+.+.|..+.|+++...-..+ .+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCC
Confidence 34455677888776664111 1112 2 344667777788888888888776654443 345568899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 497 LNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 497 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
++.|.++.++.. ++..|..|.......|+.+.|+++|.+.- -+..|.-+|...|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999888876654 67789999999999999999988888732 2667777888888877777777666655
Q ss_pred C
Q 048281 577 N 577 (660)
Q Consensus 577 ~ 577 (660)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 250
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=7.8 Score=41.56 Aligned_cols=102 Identities=12% Similarity=0.109 Sum_probs=58.9
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHhCCCC---ChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChh
Q 048281 141 IKCCCDVMAVLEVKKIHGLVFKLGLDL---DVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFH 217 (660)
Q Consensus 141 l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 217 (660)
++.+.+.+.+++|..+.+... |..| ...++...|..+.-.|++++|-...-.|...+..-|.-.+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 344455566666665544332 2222 23456667777777788888887777777777777777777776666655
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048281 218 KALEVFRRMSKEGIWMSRFTVTGVLSALIM 247 (660)
Q Consensus 218 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 247 (660)
....++= ......+...|..++-.+..
T Consensus 441 ~Ia~~lP---t~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYLP---TGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccCC---CCCcccCchHHHHHHHHHHH
Confidence 4433321 11112344556666655554
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.57 E-value=0.3 Score=45.23 Aligned_cols=89 Identities=19% Similarity=0.148 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCh
Q 048281 458 SGFLSQGREFLPLMESRYGVVPT---IEHYTCVIDMLGRAGQLNEAYELALAMPN-----EANPVVWRTLLAASRLHGNT 529 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~ 529 (660)
.|++..|.+.|...+++ .+-+ ...+-.|..++...|++++|..+|..+.. +.-+..+.-|.......|+.
T Consensus 154 sgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 35566666666666552 2221 23344566666666666666666654432 12234556666666777777
Q ss_pred HHHHHHHHHHHhcCCCCcc
Q 048281 530 DLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 530 ~~A~~~~~~~~~~~p~~~~ 548 (660)
++|...++++.+.-|+.+.
T Consensus 232 d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 232 DEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHHHCCCCHH
Confidence 7777777777777776543
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.51 E-value=0.46 Score=45.45 Aligned_cols=194 Identities=8% Similarity=0.054 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHh-------cCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC---H
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFT-------KMSKK--DVASWNIMILGYGMDGQGKEALDMFSCMCEA-KLKPD---E 445 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~---~ 445 (660)
..++..+.++.++.|.+++++..-- +.... -..+|..+.+++-+.-++.+++.+-+.-... |..|- .
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 3455556666777777666554321 11111 1235666666666666666666665544432 22231 1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-----CChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----C-CCH-
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVV-----PTIEHYTCVIDMLGRAGQLNEAYELALAMPN-----E-ANP- 513 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~~~- 513 (660)
....++..+....+.++++++.|+.+.+- ... ....++..|...|.+..+.++|.-+..+... . .|.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 22333445666667788888888887652 211 1235788889999999998888766554321 0 121
Q ss_pred HHH-----HHHHHHHHHcCChHHHHHHHHHHHhc--CCCC----cchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 514 VVW-----RTLLAASRLHGNTDLAEIAAQRVFQL--EPGH----CGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 514 ~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
.-| ..+.-+++..|....|.+..+++.++ ...| +.....++++|...|+.+.|..-++..
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122 23455788888888888888888775 3333 334457888999999888877666544
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.45 E-value=0.34 Score=39.79 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhc--CCCCCHhH
Q 048281 335 DLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTK--MSKKDVAS 412 (660)
Q Consensus 335 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~ 412 (660)
|..++..++.++++.|+++....+.+..- |+..++..... . +.. -..|+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~-----------------~-------~~~~spl~Pt~~l 54 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEG-----------------D-------YPPSSPLYPTSRL 54 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccC-----------------c-------cCCCCCCCCCHHH
Confidence 45677778888888888887777765442 33333211100 0 000 11355666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCE-AKLKPDEVTFVGVLS 453 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~ 453 (660)
..+++.+|+.+|++..|+++++...+ -+++.+..+|..|+.
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66666666666777777776666654 355556667777765
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.44 E-value=2.7 Score=35.51 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=57.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 048281 415 IMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA 494 (660)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 494 (660)
.++..+.+.+.......+++.+...+ ..+...++.++..|++. +..+..+.+.. . .+.......++.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~-----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN--K-----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh--c-----cccCCHHHHHHHHHHc
Confidence 44555555556666666666666554 24445555566655543 22333333331 0 1112223345555555
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048281 495 GQLNEAYELALAMPNEANPVVWRTLLAASRLH-GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY 557 (660)
Q Consensus 495 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 557 (660)
+.++++.-++.++.. +...+..+..+ ++.+.|++.+.+ +.++..|..++..+
T Consensus 83 ~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 83 KLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred CcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 556666666655542 11122222233 556666665554 23344455554443
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.29 E-value=1.1 Score=45.96 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=95.9
Q ss_pred HHHHcCCChhHHHHHHH--HHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 048281 107 SGFYSNDFAFKGLDFFN--HMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQF 184 (660)
Q Consensus 107 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 184 (660)
+...-.++++.+.++.+ ++.. .+ .....+.++..+-+.|..+.|.++...- ..-.+...++|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCC
Confidence 34455677777666654 1221 12 2344777888888888888888874322 123455678899
Q ss_pred hHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHh
Q 048281 185 MEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKM 264 (660)
Q Consensus 185 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 264 (660)
++.|.++.++.. +...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999998877666 566899999999999999999999887643 556666677777777776666666655
Q ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHh
Q 048281 265 GYDSGVPVMNALIDMYGKGKCVGEALEIFEM 295 (660)
Q Consensus 265 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 295 (660)
|- ++.-..++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 51 34444445555666666655544
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.5 Score=44.75 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=112.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHhhcCCH
Q 048281 422 MDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYT----CVIDMLGRAGQL 497 (660)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 497 (660)
-+|+..+|...++++.+. .+.|...+...=.+|...|+...-...++.+.. ...++...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888888899998876 466777788778899999999998888888875 3345543333 344455689999
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhCCChHHHHHHHH
Q 048281 498 NEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH----CGNYVLMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 498 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 571 (660)
++|++.-++... +.|.-.-.+....+...|+..++.+...+-...-... ...|-..+-.+.+.+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988765 4455556667777888899988888776643321111 1245566667778899999999998
Q ss_pred HHHhCCCccCCc
Q 048281 572 TMRQQNVRKNPG 583 (660)
Q Consensus 572 ~~~~~~~~~~~~ 583 (660)
.=.-....++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 754444444443
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.25 E-value=3.8 Score=36.57 Aligned_cols=163 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
+..||-+.--+...|+++.|.+.|+...+....-+-...|. .-++.-.|++.-|.+-+-..-+.-.-.|=...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 45778888888888888888888888877532222111221 1234456788888776666544212222222332222
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhCCC
Q 048281 490 MLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH-------CGNYVLMSNIYVAGGK 562 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 562 (660)
.+.-+..+|..-+.+--...|..-|...+-.+.- |+.. .+.+++++.+-..++ .++|.-|+.-|...|.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2344566665544332223455566655544432 2211 123344443332232 3678899999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 048281 563 YEEVLDIRHTMRQQNV 578 (660)
Q Consensus 563 ~~~a~~~~~~~~~~~~ 578 (660)
.++|..+|+.....++
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999998876544
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.20 E-value=4.1 Score=39.36 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHH
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMSK-------K--DVASWNIMILGYGMDGQGKEALDMFSCMCEA----KLKPDEVT 447 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 447 (660)
....+..++.-.+.++.+++.|+...+ + ....+-.|...|.+..++++|+-+..+..+. ++.--..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 344456666666677777777765431 1 2235667777788888888887776665532 22222222
Q ss_pred HHH-----HHHHHhccCCHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 448 FVG-----VLSACSHSGFLSQGREFLPLMESR---YGVVPT-IEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 448 ~~~-----ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
|.. +.-++...|.+..|.+.-++..+- .|-.+. ......+.+.|-..|+.|.|+.-|+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 222 233566677777777777665541 133222 34556778888888888888877765
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.19 E-value=2.5 Score=41.82 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHHccCCchhHHHHHHHHHHhC
Q 048281 233 MSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMG 265 (660)
Q Consensus 233 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (660)
.|-..+.+++.++.-.|+.+.|.+..+.|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 444566677777777777777777777777663
No 260
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.16 E-value=0.31 Score=42.54 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=65.1
Q ss_pred HhhcCCHHHHHHHHHhCCC--C-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 048281 491 LGRAGQLNEAYELALAMPN--E-----ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKY 563 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 563 (660)
+.+.|++++|..-|..... + -..+.|..-..+..+.+.++.|+.-..++++++|....+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4455666666665554322 1 12345555566788889999999999999999998877788888899999999
Q ss_pred HHHHHHHHHHHhCC
Q 048281 564 EEVLDIRHTMRQQN 577 (660)
Q Consensus 564 ~~a~~~~~~~~~~~ 577 (660)
++|+.-++++.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987754
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.10 E-value=2.2 Score=43.18 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=107.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHH
Q 048281 422 MDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAY 501 (660)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 501 (660)
+..+...-++.-++..+ +.||-.+.-.+ -+--....+.++.+++++..+. + ...+..-- .....|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccc---hh
Confidence 44566666677777766 45665433222 2333445678888888887662 1 00110000 0001111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048281 502 ELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG--HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVR 579 (660)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 579 (660)
+.+..-..++-..+-..+..++.+.|+.++|++.++.+++..|. +-.....|+..+...+++.++..++.+..+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111233445566788889999999999999999987765 3457788999999999999999999987654443
Q ss_pred cCCcEEEEEECCEEEEEE-eCCCCCCC-------HHHHHHHHHHHHHHHHHcCcccCc
Q 048281 580 KNPGCSWIELKDGLHTFI-SSDRSHPE-------AKSIYAELHSLTARLREHGDCCAG 629 (660)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~l~~~m~~~~~~p~~ 629 (660)
+....+|.. ++-.+. .+++..|+ .....+.++.+.+.++..-.+|..
T Consensus 328 kSAti~YTa---ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 328 KSATICYTA---ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred chHHHHHHH---HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 333222211 000000 11222222 223344556667777777777764
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.97 E-value=0.27 Score=45.24 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=66.2
Q ss_pred CCCcccHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhC----------------CHHHHH
Q 048281 96 EPNVFTYNAMISGFYSN-----DFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVM----------------AVLEVK 154 (660)
Q Consensus 96 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----------------~~~~a~ 154 (660)
+.|-.+|-..+..+... +..+=....++.|.+.|+.-|..+|+.||+.+-+.. +-+=++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45666676666666433 455556677888899999999999999988875542 223467
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 048281 155 KIHGLVFKLGLDLDVYIGSALVNTYLKCQF 184 (660)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 184 (660)
.++++|...|+.||..+-..|++++++.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 888888888998998888888888877765
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.85 E-value=5.4 Score=36.87 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcc
Q 048281 386 MDMYTKCGSMRDAQMVFTKMSKK------DVASWNIMILGYGMDGQGKEALDMFSCMCEAK-LKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~ 458 (660)
+..-.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+..+++....- -.|| .-|...|.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHh
Confidence 33445667777777777776632 12234445556667777777777777776642 2222 2333333333311
Q ss_pred -------CCHH---HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHc
Q 048281 459 -------GFLS---QGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVV--WRTLLAASRLH 526 (660)
Q Consensus 459 -------g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~ 526 (660)
.|.. .|..-|++++.++ |+. .-..+|...+..+. |... =.++...|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr 180 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIARYYLKR 180 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 1222 2233333333321 111 11111111111110 1110 12345678888
Q ss_pred CChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 527 GNTDLAEIAAQRVFQLEPGHC---GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
|.+..|..-++++++.-|+.+ +.+..+..+|...|..++|.+.-+-+..
T Consensus 181 ~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 888888888888888755443 3555667778888888888877665543
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.80 E-value=8.8 Score=39.11 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=10.6
Q ss_pred CCChHHHHHHHHHHHh
Q 048281 560 GGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 560 ~g~~~~a~~~~~~~~~ 575 (660)
-.+.+.|+.++....+
T Consensus 415 Wk~veGAL~lL~~twe 430 (539)
T PF04184_consen 415 WKRVEGALNLLHCTWE 430 (539)
T ss_pred HhcCHhHHHHHHHHhc
Confidence 3566777777776654
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.70 E-value=5.6 Score=36.55 Aligned_cols=197 Identities=15% Similarity=0.048 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHh-CccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhH
Q 048281 337 VTFSTVLPACSHLAALMHGRQIHGYIVVN-GLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK--K-DVAS 412 (660)
Q Consensus 337 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~ 412 (660)
..+......+...+....+...+...... ..... ...+......+...+....+.+.+..... + +...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNL--------AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch--------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH
Confidence 33444444445555555555554444432 11111 44555566666666777777777776553 2 1122
Q ss_pred HHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHH
Q 048281 413 WNIMIL-GYGMDGQGKEALDMFSCMCEAKLKP----DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTC 486 (660)
Q Consensus 413 ~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 486 (660)
...... .+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..
T Consensus 132 ~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 207 (291)
T COG0457 132 EALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLN 207 (291)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHH
Confidence 333333 68888999999999999865 233 233344444446778899999999999876 3334 4678888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 487 VIDMLGRAGQLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
+...+...++++.|...+..... .|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88899999999999999888654 333 455566666666777899999999999998886
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=5.5 Score=36.36 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLK-----PDEVTFVGVLS 453 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~ll~ 453 (660)
...++--..+|..+|..+-|-..+++.- -...+.++++|+++|++....=.. .-...+..+-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4456666777778887776666555431 123445667777777665532100 01122333444
Q ss_pred HHhccCCHHHHHHHHHHhHH---hcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHh---CCC---CCCHHHHHHHHHHH
Q 048281 454 ACSHSGFLSQGREFLPLMES---RYGVVPTI-EHYTCVIDMLGRAGQLNEAYELALA---MPN---EANPVVWRTLLAAS 523 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~---~~~---~~~~~~~~~l~~~~ 523 (660)
.+.+...+++|-..+..-.. ...--++. ..|.+.|-.|.-..++..|.+.++. ++. +.+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 55666666665544433211 00111222 4466666677778889999999887 332 24556777788777
Q ss_pred HHcCChHHHHHHH
Q 048281 524 RLHGNTDLAEIAA 536 (660)
Q Consensus 524 ~~~g~~~~A~~~~ 536 (660)
- .|+.+++..++
T Consensus 239 d-~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 D-EGDIEEIKKVL 250 (308)
T ss_pred c-cCCHHHHHHHH
Confidence 4 47777665554
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.57 E-value=3.8 Score=35.44 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=88.2
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCC--CHHHHHHHHHhcC
Q 048281 220 LEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGK--CVGEALEIFEMME 297 (660)
Q Consensus 220 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~~~ 297 (660)
++.++.+.+.+++|+...+..+++.+.+.|++..- .+++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45666777788889988999999999988876543 34456666565554443332222211 1334555555543
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccC
Q 048281 298 EKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAK 369 (660)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 369 (660)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++......+...
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~ 153 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERNLRL 153 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHhh
Confidence 24566778888999999999998875322 22233556777777777776666777666655443
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.40 E-value=4.2 Score=34.25 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh
Q 048281 102 YNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLK 181 (660)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 181 (660)
...++..+...+.+.....+++.+...+. .+...++.++..+++.+. ......+. . ..+.+.....+..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~---~---~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLD---N---KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHH---h---ccccCCHHHHHHHHHH
Confidence 34555666656666666666666665542 355556666666654422 22222222 1 1222333334555555
Q ss_pred cCChHHHHHHHccC
Q 048281 182 CQFMEEALKVFEEL 195 (660)
Q Consensus 182 ~g~~~~A~~~~~~~ 195 (660)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555554443
No 269
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.33 E-value=0.16 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677777888888888888888888888774
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.32 E-value=9.7 Score=38.14 Aligned_cols=148 Identities=9% Similarity=-0.070 Sum_probs=81.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--hHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP---DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT--IEH 483 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 483 (660)
...+|..++..+.+.|+++.|...+.++...+..+ ++.....-...+-..|+..+|...++..... ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44578888888888899888888888887643221 2333334455566678888888888877762 12111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048281 484 YTCVIDMLGRAGQLNEAYEL-ALAMPNEANPVVWRTLLAASRLH------GNTDLAEIAAQRVFQLEPGHCGNYVLMSNI 556 (660)
Q Consensus 484 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 556 (660)
...+...+.. ..+..... ......+.-...+..+..-+... ++.+.+...|+++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333333334344 788899999999999999887777777766
Q ss_pred HHh
Q 048281 557 YVA 559 (660)
Q Consensus 557 ~~~ 559 (660)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 654
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.03 E-value=0.33 Score=39.09 Aligned_cols=56 Identities=21% Similarity=0.116 Sum_probs=51.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 521 AASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
-+....|+.+.|++.|.+.+.+-|.+++.|+.-+..+.-+|+.++|+.-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999999999999999999999988664
No 272
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.00 E-value=13 Score=38.74 Aligned_cols=121 Identities=15% Similarity=0.032 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN---EANPVVWRTLLA 521 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~ 521 (660)
..+|...+.--...|+.+...-.|+...- .+..=...|-..+.-....|+.+-|..++..... +..+.+--.-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34666666666667777777777766643 2222334555555555555777777666655432 222222222223
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 048281 522 ASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVL 567 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 567 (660)
.+-..|+.+.|..+++.+.+--|+....-..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 3445567777777777776655665555555555666677777666
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=2.9 Score=39.83 Aligned_cols=154 Identities=10% Similarity=-0.016 Sum_probs=108.2
Q ss_pred hcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhccCCHHH
Q 048281 391 KCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFV----GVLSACSHSGFLSQ 463 (660)
Q Consensus 391 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~ 463 (660)
-.|+.-+|...++++. ..|..+++--=.+|..+|+.+.-...+++.... ..||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4677888887888776 347888988889999999999999999998865 355554333 23345668899999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC---H---HHHHHHHHHHHHcCChHHHHHHHH
Q 048281 464 GREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEAN---P---VVWRTLLAASRLHGNTDLAEIAAQ 537 (660)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~~l~~~~~~~g~~~~A~~~~~ 537 (660)
|.+.-++..+ --+.|.-.-.++...+...|+..++.++..+-...-+ . ..|-...-.+...+.++.|+.+|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888765 2334555667788888899999999999887654211 1 112222333455689999999997
Q ss_pred HHH--hcCCCCc
Q 048281 538 RVF--QLEPGHC 547 (660)
Q Consensus 538 ~~~--~~~p~~~ 547 (660)
+=+ +++.++.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 632 2455554
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.78 E-value=0.21 Score=30.47 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 516 WRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
|..|...|.+.|++++|+.++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555566666666666666666443
No 275
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.62 E-value=0.25 Score=46.77 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=80.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC
Q 048281 452 LSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGN 528 (660)
Q Consensus 452 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 528 (660)
..-|.++|.+++|+..|..... +.| +..++..-..+|.+..++..|+.-...... +.-...|.--+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568899999999999998764 444 788888888899999999888776665432 2223456666666667788
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHH
Q 048281 529 TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDI 569 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 569 (660)
..+|.+-++.+++++|++.+ |-..|.+.....|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 99999999999999998644 44445555555554443
No 276
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.42 E-value=13 Score=37.26 Aligned_cols=86 Identities=7% Similarity=-0.013 Sum_probs=59.0
Q ss_pred CCCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccC-CCCCCcccHHH
Q 048281 26 FNHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNL-SCEPNVFTYNA 104 (660)
Q Consensus 26 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 104 (660)
..+|.+..+|..|++-+...+..++..+++++|..- .+--+.+|..-|+.=....++...+.+|.+- ...-++..|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 345667778888999888888888888888888653 2233456666676656667888888888742 23345667777
Q ss_pred HHHHHHcC
Q 048281 105 MISGFYSN 112 (660)
Q Consensus 105 li~~~~~~ 112 (660)
.+.--.+-
T Consensus 115 Yl~YIRr~ 122 (660)
T COG5107 115 YLEYIRRV 122 (660)
T ss_pred HHHHHHhh
Confidence 66655443
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.14 E-value=0.31 Score=29.69 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
+|..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
No 278
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.14 E-value=17 Score=38.02 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCh-----hhHHHHHHHHHc----cCCchhHHHHHHHHHHhCCCCCchH
Q 048281 203 WNAMVNGYAQIGEFHKALEVFRRMSKEG-IWMSR-----FTVTGVLSALIM----MGFFKNGRVVHGIVVKMGYDSGVPV 272 (660)
Q Consensus 203 ~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 272 (660)
...++....-.|+-+.+++.+.+..+.+ +.-.. -+|..++..+.. ..+.+.+.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4445555556677777777777654422 21111 123333333332 34566777777777766 356555
Q ss_pred HHHH-HHHHHcCCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 048281 273 MNAL-IDMYGKGKCVGEALEIFEMMEEK-------DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLP 344 (660)
Q Consensus 273 ~~~l-i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 344 (660)
|... ...+...|++++|++.|+..... ....+--+.-.+.-.+++++|.+.|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5433 35667789999999999875431 22334455666778899999999999999753 234445554444
Q ss_pred HH-hcccch-------HHHHHHHHHHHHhC
Q 048281 345 AC-SHLAAL-------MHGRQIHGYIVVNG 366 (660)
Q Consensus 345 ~~-~~~~~~-------~~a~~~~~~~~~~~ 366 (660)
+| ...++. ++|..++..+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 43 445666 77777777765543
No 279
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.07 E-value=21 Score=38.94 Aligned_cols=113 Identities=12% Similarity=-0.028 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 048281 424 GQGKEALDMFSCMCEAK-LKPDEV--TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEA 500 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 500 (660)
.+.+.|..++.+..... +.+... ....+.......+...++...++.... ...+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 44566777776654332 222221 222232222222224455555554432 112333444444454567777777
Q ss_pred HHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048281 501 YELALAMPNE--ANPVVWRTLLAASRLHGNTDLAEIAAQRV 539 (660)
Q Consensus 501 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (660)
...+..|+.. ....-.-=+..++...|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766541 11122222345555567777777777665
No 280
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.83 E-value=4.4 Score=33.86 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=59.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKL--KPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG 495 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 495 (660)
....+.|++++|.+.|+.+...-. +-.......++.++.+.+++++|...++..++-+.-.|+ .-|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 334556777777777777665411 112234445666677777777777777777664333333 23444444433322
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 496 QLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 496 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
..+.++.-+- ..+.|. +....|...|+++++.-|++.
T Consensus 97 ~~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 2221111111 111121 235578888888898889864
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.78 E-value=0.33 Score=31.19 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTL 519 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 519 (660)
++..+...|.+.|++++|.++|+++.. +.|+..|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 445556666666666666666665443 2334444433
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.44 E-value=14 Score=35.58 Aligned_cols=19 Identities=16% Similarity=-0.169 Sum_probs=12.4
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 048281 522 ASRLHGNTDLAEIAAQRVF 540 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~ 540 (660)
.+.+.++++.|...|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556677777777776543
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.05 E-value=1.5 Score=36.63 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
...++.+.++.++..+.-+.|+.++.-..-++++...|+|+||.++++.+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3467888888888888888888888888888888888888888888888877654
No 284
>PRK09687 putative lyase; Provisional
Probab=91.04 E-value=15 Score=35.28 Aligned_cols=119 Identities=10% Similarity=-0.031 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 048281 414 NIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG-FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG 492 (660)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 492 (660)
...+.++.+.++ .+++..+-.+.+ .+|...-...+.++.+.+ ....+...+-.+.. .++..+-...+.+++
T Consensus 146 ~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 146 FAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHH
Confidence 334444444443 344455544444 233333333444444432 12334444444432 234445555555666
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 048281 493 RAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 493 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 544 (660)
+.|+ ..|+..+-+....++ .....+.++...|+. +|...+.++.+..|
T Consensus 218 ~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 218 LRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 6665 334444433332333 223445555555553 46666666665555
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.87 E-value=1.1 Score=42.22 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
++..++..+...|+.+.+...+++++..+|-+-..|..+..+|.+.|+...|+..++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555554
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.81 E-value=1.6 Score=37.15 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=29.7
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
...++.+.++.++..+.-+.|..++.-..-++++...|+|.+|..+++.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34445555555555555555555555555555555555566665555555443
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.35 E-value=13 Score=36.04 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHhh--h----CCHHHHHHHHHHHHHhCCC---CChhHHHHHHHH
Q 048281 116 FKGLDFFNHMRQLGVLPDKYTFPCLIKCCCD--V----MAVLEVKKIHGLVFKLGLD---LDVYIGSALVNT 178 (660)
Q Consensus 116 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~ 178 (660)
.+.+.+++.|.+.|..-+..+|-+..-.... . .....+..+|+.|.+..+- ++...+..|+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 4566788889998888777776654433332 1 2356778888888877532 334455555443
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.03 E-value=9.4 Score=31.23 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 048281 414 NIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGV 477 (660)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 477 (660)
..-+..+...|+-++-.+++.++.+.+ .|++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 344556666777777777777666532 566666666777777777777777777777663 44
No 289
>PRK09687 putative lyase; Provisional
Probab=89.93 E-value=19 Score=34.62 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=44.7
Q ss_pred CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 048281 267 DSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPAC 346 (660)
Q Consensus 267 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 346 (660)
.++..+...-+.++.+.|+.+....+.+.+..++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455566666667777776543334444444433 234566777777775 688888887764 35666655555544
No 290
>PRK12798 chemotaxis protein; Reviewed
Probab=89.89 E-value=23 Score=35.48 Aligned_cols=180 Identities=15% Similarity=0.206 Sum_probs=120.4
Q ss_pred cCCHHHHHHHHhcCCC----CCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHH
Q 048281 392 CGSMRDAQMVFTKMSK----KDVASWNIMILGY-GMDGQGKEALDMFSCMCEAKLKPDEV----TFVGVLSACSHSGFLS 462 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~ 462 (660)
.|+..+|.+.+..+.. +....|-.|+.+- ....++.+|+.+|++..-. .|-.. ...--+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999988873 3455677777654 4456899999999988753 44332 3333445667889999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHH-HHHHHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048281 463 QGREFLPLMESRYGVVPTIEHYTC-VIDMLGR---AGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQR 538 (660)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (660)
++..+-....+++...|-...|.. +...+.+ .-..+.-..++..|.......+|..+.+.-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 998888877776666665544433 2333333 334566666777777544567899999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHh-----CCChHHHHHHHHHHH
Q 048281 539 VFQLEPGHCGNYVLMSNIYVA-----GGKYEEVLDIRHTMR 574 (660)
Q Consensus 539 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~ 574 (660)
+..+... ...-...+.+|.. ..+.+++.+.++.+-
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9998532 2223333444432 244666666665543
No 291
>PRK10941 hypothetical protein; Provisional
Probab=89.78 E-value=2.5 Score=40.06 Aligned_cols=63 Identities=21% Similarity=0.064 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456677889999999999999999999999999888889999999999999999998887653
No 292
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.51 E-value=2.5 Score=28.44 Aligned_cols=51 Identities=10% Similarity=0.139 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCc
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGD 625 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~ 625 (660)
....++-.+.+.|++++|++..+.+.+. +|...+..+....+.++|++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3556888899999999999999999873 34555666666666788888773
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.45 E-value=18 Score=33.60 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=87.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEAKL--KPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR 493 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 493 (660)
=+..-.+.|++++|.+.|+.+..... +-...+...++.++.+.++++.|....++..+.++-.||+. |...+.++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs- 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS- 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH-
Confidence 34445678999999999999987521 11234566667788889999999999999988777777763 444444443
Q ss_pred cCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc-----------------chHHHHHH
Q 048281 494 AGQLNEAYELALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC-----------------GNYVLMSN 555 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~~ 555 (660)
.|..+.. ..|.. -...|..-|+++++.-|++. ..=..+++
T Consensus 118 ---------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iar 175 (254)
T COG4105 118 ---------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIAR 175 (254)
T ss_pred ---------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 11221 12234444444455445432 22346788
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 048281 556 IYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 556 ~~~~~g~~~~a~~~~~~~~~~ 576 (660)
-|.+.|.|.-|..-++.|.+.
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 899999999999999988776
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.38 E-value=20 Score=35.84 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 511 ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP----GHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 511 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
....+|..++..+++.|+++.|...+.++....+ ..+.....-+..+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556899999999999999999999999988642 2456677789999999999999999988876
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.18 E-value=1.2 Score=42.47 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=58.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG 495 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 495 (660)
.+-|.+.|.+++|+..|...... .| |.+++..-..+|.+...+..|..-...++.- -..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999988874 66 8899988889999999988888777766541 1111223333333333345
Q ss_pred CHHHHHHHHHhC
Q 048281 496 QLNEAYELALAM 507 (660)
Q Consensus 496 ~~~~A~~~~~~~ 507 (660)
...+|.+-++..
T Consensus 180 ~~~EAKkD~E~v 191 (536)
T KOG4648|consen 180 NNMEAKKDCETV 191 (536)
T ss_pred hHHHHHHhHHHH
Confidence 555555555443
No 296
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.00 E-value=39 Score=36.94 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=30.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVL 567 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 567 (660)
++..+++..+.+.+..+.+.. .+.+|..|..+..-+++.+..++-.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHH
Confidence 456677777777777776654 4456677888888888777544333
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.64 E-value=0.76 Score=27.22 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 548 GNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998763
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.61 E-value=0.87 Score=26.69 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=17.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
.+..++.+.|++++|...|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455566666666666666666666664
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.61 E-value=41 Score=36.73 Aligned_cols=56 Identities=16% Similarity=0.328 Sum_probs=32.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc---CCCCc-chHH-----HHHHHHHhCCChHHHHHHHHHHH
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQL---EPGHC-GNYV-----LMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
++..-.-.|+..+..........+ .|+.. ..|. .+...|...|+.++|.....+..
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 333333367777766666555554 22222 2332 34455777899999988887764
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=41 Score=36.50 Aligned_cols=55 Identities=11% Similarity=-0.119 Sum_probs=31.4
Q ss_pred HHHHhHcCCChhHHHHHHccCC-CCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048281 73 LINMYSKCCQMKYALFVFNNLS-CEP---NVFTYNAMISGFYSNDFAFKGLDFFNHMRQ 127 (660)
Q Consensus 73 ll~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 127 (660)
-++.+.+.+.+++|+..-+... ..| -...+-..|..+.-.|++++|-...-.|..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 3556666677777777665211 112 123456666666666777766666555543
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.49 E-value=1 Score=28.24 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555544
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.49 E-value=7.3 Score=34.37 Aligned_cols=98 Identities=9% Similarity=-0.035 Sum_probs=59.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcC
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPT-----IEHYTCVIDMLGRAGQLNEAYELALAMPN-EA-NPVVWRTLLAASRLHG 527 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g 527 (660)
+...|++++|..-|..++.. +++. ...|..-.-++.+.++++.|++-..+... .| ......--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44556677777766666652 2222 12344445566777788887777666543 12 1222222344677788
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHH
Q 048281 528 NTDLAEIAAQRVFQLEPGHCGNYVLMS 554 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 554 (660)
.++.|+.-|+++++.+|....+-....
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 899999999999999997654433333
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.45 E-value=17 Score=32.13 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHhhcCCHHHH
Q 048281 428 EALDMFSCMCEAKLKPDEVTFVG--VLSACSHSGFLSQGREFLPLMESRYGVVPTIEHY-----TCVIDMLGRAGQLNEA 500 (660)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A 500 (660)
+......++....-+..-.++.. +...+...+++++|..-++..... |....+ -.|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555555554321112222222 234567778888888887776531 222222 2345667778888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 501 YELALAMPNEA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 501 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
+..++....+. .......-..++...|+.++|...|+++++..++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888765421 1122333456778888888888888888887643
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.43 E-value=4.8 Score=35.56 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCcchHH---
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPNE-----ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL--EPGHCGNYV--- 551 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~--- 551 (660)
..+..+.+.|.+.|+.++|.+.|.++... .-...+..++..+...+++..+.....++..+ .+++....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778888899999999999999887652 22346777888888889999988888887775 223322111
Q ss_pred -HHHHHHHhCCChHHHHHHHHHH
Q 048281 552 -LMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 552 -~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
.-+-.+...+++.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1222344578888888887665
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.11 E-value=2.2 Score=40.20 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=74.5
Q ss_pred HHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcc-----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 048281 59 LRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVF-----TYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPD 133 (660)
Q Consensus 59 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 133 (660)
...|...++.+...++..-....+++++...+-+....|+.. +-.++++-+.+ -++++++.++..=++.|+-||
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 344556666677777777776778888887764333333221 12233444433 367789999988889999999
Q ss_pred cccHHHHHHHHhhhCCHHHHHHHHHHHHHhC
Q 048281 134 KYTFPCLIKCCCDVMAVLEVKKIHGLVFKLG 164 (660)
Q Consensus 134 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 164 (660)
..+++.+|+.+.+.+++..|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777654
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.48 E-value=6.8 Score=37.14 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCE 438 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (660)
..++..++..+..+|+.+.+.+.++++.. -+...|..++.+|.+.|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 55566666666666666666666665542 2445666666666666666666666665553
No 307
>PHA02875 ankyrin repeat protein; Provisional
Probab=87.44 E-value=38 Score=34.90 Aligned_cols=209 Identities=13% Similarity=0.079 Sum_probs=110.4
Q ss_pred HHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHccCCCCCCcc--cHHHHHHHHHcCCCh
Q 048281 40 QLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFNNLSCEPNVF--TYNAMISGFYSNDFA 115 (660)
Q Consensus 40 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~~~~ 115 (660)
......|++ ++.+.+++.|..++... ....+...++.|+.+-+.-+++ .+..|+.. ...+.+...+..|+.
T Consensus 7 ~~A~~~g~~----~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 7 CDAILFGEL----DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHHHHhCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCcccHHHHHHHCCCH
Confidence 334455665 55566667787665432 3445566677888888777777 54444332 112334455567777
Q ss_pred hHHHHHHHHHHHCCCCCCcc---cHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhH--HHHHHHHhHhcCChHHHHH
Q 048281 116 FKGLDFFNHMRQLGVLPDKY---TFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYI--GSALVNTYLKCQFMEEALK 190 (660)
Q Consensus 116 ~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~ 190 (660)
+.+..+++ .|...+.. .-.+.+...+..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+-+..
T Consensus 82 ~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 82 KAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred HHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 66554443 33221111 1123344455566654 5555566777665432 2344555567888887777
Q ss_pred HHccCCCC---CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh---HHHHHHHHHccCCchhHHHHHHHHHHh
Q 048281 191 VFEELPLR---DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFT---VTGVLSALIMMGFFKNGRVVHGIVVKM 264 (660)
Q Consensus 191 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~ 264 (660)
+++.-... |..-++.|.. .+..|+. ++++.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.
T Consensus 154 Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 154 LIDHKACLDIEDCCGCTPLII-AMAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred HHhcCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 77654432 2223333333 3344553 34555666676665432 124444444555544 44445666
Q ss_pred CCCCCc
Q 048281 265 GYDSGV 270 (660)
Q Consensus 265 g~~~~~ 270 (660)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 766553
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.38 E-value=7.7 Score=33.39 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=56.2
Q ss_pred cCCCHHHHHHHHHhcCCCChhhHHHH-----HHHHHHcCChHHHHHHHHHHhhcCCCCCHH-HHHHHHH--HHhcccchH
Q 048281 282 KGKCVGEALEIFEMMEEKDIFSWNSI-----MTVHEQCGNHDGTLRLFDRMLSAGFQPDLV-TFSTVLP--ACSHLAALM 353 (660)
Q Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~--~~~~~~~~~ 353 (660)
+.+..++|+.-|..+.+.+--.|-.| .....+.|+...|...|.++-.....|-.. -...+=. .+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34555666666666655443333332 234556677777777777776543333322 1111111 233445555
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 048281 354 HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS 406 (660)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 406 (660)
......+-+...+-+.. ...-.+|.-+-.+.|++..|.+.|..+-
T Consensus 150 dV~srvepLa~d~n~mR--------~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 150 DVSSRVEPLAGDGNPMR--------HSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHhhhccCCCChhH--------HHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44443333322221111 3334455555556666666666666543
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.35 E-value=5.3 Score=37.84 Aligned_cols=92 Identities=13% Similarity=0.217 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-C--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK-K--------DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFV 449 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 449 (660)
..+...++..-....+++++...+-++.. + ...+|-.++.- =++++++.++..=+..|+-||..+++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhHH
Confidence 44445556666667788888888777652 2 23344333333 36779999999999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHh
Q 048281 450 GVLSACSHSGFLSQGREFLPLMESR 474 (660)
Q Consensus 450 ~ll~~~~~~g~~~~a~~~~~~~~~~ 474 (660)
.++..+.+.+++..|.++.-.|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999888887663
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.19 E-value=19 Score=31.23 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=67.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 048281 155 KIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMS 234 (660)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 234 (660)
++.+.+.+.++.|+...+..+++.+.+.|++.....++.--.-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR----- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR----- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-----
Confidence 444555566777777777777777777777666655554333333222222221111 1112222222222111
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc
Q 048281 235 RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQC 314 (660)
Q Consensus 235 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 314 (660)
+ + ..+..++..+...|++-+|.++.+....-+......++.+-.+.
T Consensus 88 --------------------------L---~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 88 --------------------------L---G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred --------------------------h---h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 0 1 02344556667777777777777775444444445556666666
Q ss_pred CChHHHHHHHHHHhh
Q 048281 315 GNHDGTLRLFDRMLS 329 (660)
Q Consensus 315 g~~~~a~~~~~~m~~ 329 (660)
+|..--..+|+-..+
T Consensus 134 ~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 134 NDDQLFYAVFRFFEE 148 (167)
T ss_pred CCHHHHHHHHHHHHH
Confidence 665544444444443
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.81 E-value=19 Score=30.84 Aligned_cols=87 Identities=13% Similarity=0.002 Sum_probs=50.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIE-HYTCVIDMLGRAGQLNEAYELALAMPNE-ANPVVWRTLLAASRLHGNTDLA 532 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 532 (660)
-...++.+.+..++..+.- +.|... .-..-...+.+.|+|.+|..+|+++... |....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3456688888888887753 445432 2222344467889999999999987763 3444445555555544332332
Q ss_pred HHHHHHHHhcCC
Q 048281 533 EIAAQRVFQLEP 544 (660)
Q Consensus 533 ~~~~~~~~~~~p 544 (660)
.....++++..+
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 333444455443
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.66 E-value=4 Score=36.25 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=53.0
Q ss_pred hhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCC---CcchHHHHHHHHHhCCChHH
Q 048281 492 GRAGQLNEAYELALAMPNEA--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQL-EPG---HCGNYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~---~~~~~~~l~~~~~~~g~~~~ 565 (660)
.+.|+ ++|.+.|-.+...| +....-..+..|....|.+++++++.+++++ +|+ |++.+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 45555 66777777766532 2233333444555578899999999999997 333 57889999999999999988
Q ss_pred HH
Q 048281 566 VL 567 (660)
Q Consensus 566 a~ 567 (660)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.62 E-value=1.8 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.193 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCE 438 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (660)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
No 314
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.59 E-value=32 Score=33.31 Aligned_cols=134 Identities=10% Similarity=0.152 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc--c----cchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh
Q 048281 318 DGTLRLFDRMLSAGFQPDLVTFSTVLPACSH--L----AALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK 391 (660)
Q Consensus 318 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (660)
++.+.+++.|.+.|+.-+..+|.+....... . .....+..+++.|.+..+-.++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs-------------------- 138 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTS-------------------- 138 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccC--------------------
Confidence 4566788899999999888887664433322 1 1234455566666555432221
Q ss_pred cCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCC--HHH
Q 048281 392 CGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQ----GKEALDMFSCMCEAKLKPDEV--TFVGVLSACSHSGF--LSQ 463 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~--~~~ 463 (660)
++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+..... ..+
T Consensus 139 ----------------~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r 200 (297)
T PF13170_consen 139 ----------------PEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVAR 200 (297)
T ss_pred ----------------ccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHH
Confidence 122223233222 1111 345566777777767655443 22223322222222 346
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 464 GREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
+.++++.+.+. ++++....|..+.-+
T Consensus 201 ~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 201 VIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHc-CCccccccccHHHHH
Confidence 77778877775 777777776655433
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.29 E-value=5.4 Score=30.46 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 425 QGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
+.-++.+-+..+....+.|++....+.+.+|.+.+++..|.++++.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466677777777788999999999999999999999999999988754332 4446666554
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.23 E-value=5.7 Score=30.69 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 427 KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
-+..+-+..+....+.|++....+.+.+|.+.+++..|.++++.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566667777777889999999999999999999999999999998754433 336766664
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.92 E-value=0.93 Score=38.49 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=21.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHH
Q 048281 106 ISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKI 156 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 156 (660)
|+.+.+.+.+.....+++.+...+..-+....+.++..|++.++.+....+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444444444444444444433333344444444444444443333333
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.81 E-value=13 Score=37.42 Aligned_cols=84 Identities=11% Similarity=-0.014 Sum_probs=40.7
Q ss_pred hhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHH
Q 048281 492 GRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDI 569 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 569 (660)
...|++|.+...+..... .....+...+++.....|++++|....+.++.-+-.+++....-+..-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 345555555555543322 122334445555555555555555555555554444444433333333444555555555
Q ss_pred HHHHHh
Q 048281 570 RHTMRQ 575 (660)
Q Consensus 570 ~~~~~~ 575 (660)
++++..
T Consensus 414 wk~~~~ 419 (831)
T PRK15180 414 WKRVLL 419 (831)
T ss_pred HHHHhc
Confidence 555544
No 319
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.61 E-value=25 Score=31.13 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=66.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 048281 487 VIDMLGRAGQLNEAYELALAMPNEANPVVWRT-----LLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG 561 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 561 (660)
+...+..+|++++|...++.....+....+.. |.+.....|.+|+|...+....+-.= .+..-..-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 34567889999999999997665444444433 45677888999999988876433110 1223456789999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 048281 562 KYEEVLDIRHTMRQQN 577 (660)
Q Consensus 562 ~~~~a~~~~~~~~~~~ 577 (660)
+-++|+.-|.+..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998865
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.55 E-value=1.6 Score=24.75 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 544 (660)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555666666666666555544
No 321
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.53 E-value=0.53 Score=44.86 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=68.7
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 048281 493 RAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIR 570 (660)
Q Consensus 493 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 570 (660)
..|.+++|++.|..... ++....|..-.+++.+.++...|++-+..+++++|+.+..|-.-+.+..-.|.|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 56667888887776543 3444556666677888888888888888888888888888888888888888999999888
Q ss_pred HHHHhCCCccC
Q 048281 571 HTMRQQNVRKN 581 (660)
Q Consensus 571 ~~~~~~~~~~~ 581 (660)
....+.++...
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88888777554
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.28 E-value=10 Score=31.11 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=12.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Q 048281 552 LMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 552 ~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.|+-.+.+.++|+.++++.+.+.+
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344445555555555555555443
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.15 E-value=1.3 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHH
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~ 571 (660)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777888888888877664
No 324
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.12 E-value=2.2 Score=28.65 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
.+.-++.+.|++++|.+..+.+++.+|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4566889999999999999999999999854
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.06 E-value=1.7 Score=27.10 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 548 GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999998854
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.90 E-value=2 Score=25.41 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=25.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 548 GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998865
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.41 E-value=68 Score=35.04 Aligned_cols=43 Identities=19% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhh
Q 048281 104 AMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDV 147 (660)
Q Consensus 104 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 147 (660)
.+|--+.+.|++++|.++....... .......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4566666777777777777544432 344455666666666554
No 328
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.11 E-value=9.9 Score=33.59 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=12.0
Q ss_pred HHHHHHHhHhcCChHHHHHHHccCC
Q 048281 172 GSALVNTYLKCQFMEEALKVFEELP 196 (660)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~~~ 196 (660)
+..+...|.+.|+.+.|.+.|.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3444444555555555555444443
No 329
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.74 E-value=1.2 Score=37.72 Aligned_cols=86 Identities=9% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChh
Q 048281 37 ASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAF 116 (660)
Q Consensus 37 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 116 (660)
.+++.+...+.+.....+++.+...+...++...+.++..|++.++.+...++++ ... ..-...+++.+.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-~~~---~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-TSN---NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-SSS---SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-ccc---ccCHHHHHHHHHhcchHH
Confidence 4677777888888888899999888777788999999999999988899988888 222 133456677777777777
Q ss_pred HHHHHHHHHH
Q 048281 117 KGLDFFNHMR 126 (660)
Q Consensus 117 ~a~~~~~~m~ 126 (660)
+|.-++.++.
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 7777776654
No 330
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=19 Score=33.08 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 516 WRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+....+++...|++-++++....++...|++.-+|..-+.+.+..=+.++|..-|.++.+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3344456677889999999999999999999999999999998888888999888888763
No 331
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.75 E-value=41 Score=31.32 Aligned_cols=240 Identities=16% Similarity=0.181 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHhcCC----C---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhc---CCC--CCHHHHHHHHHHHhcccc
Q 048281 284 KCVGEALEIFEMMEE----K---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSA---GFQ--PDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 284 ~~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~~~ 351 (660)
..+++|+.-|+++.+ + .--+.-.+|..+.+.+++++....|++|..- .+. -+..+.+.++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456777777776643 1 1224455778888888888888888777531 111 234566677766666666
Q ss_pred hHHHHHHHHHHHHh-----CccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC------------C---CHh
Q 048281 352 LMHGRQIHGYIVVN-----GLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK------------K---DVA 411 (660)
Q Consensus 352 ~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~---~~~ 411 (660)
.+.-..+++.-.+. +-... ..+-+-|...|...|.+..-.+++.++.+ + -..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLW--------FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLW--------FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceee--------eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 55555555443221 11111 23345677788888888887777776541 0 124
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHhHHhcCC--CCCh--
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAK-LKPDEVTFVGVLSAC-----SHSGFLSQGREFLPLMESRYGV--VPTI-- 481 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~~~~-- 481 (660)
.|..=|..|....+-.+...+|++...-. --|.+... .+|+-| .+.|.+++|-.-|=++.+.+.- .|..
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 67777888888888888888888776432 23444443 345544 3567777776544444432221 1222
Q ss_pred -HHHHHHHHHHhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048281 482 -EHYTCVIDMLGRAGQ----LNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQ 537 (660)
Q Consensus 482 -~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (660)
--|-.|.+++.+.|- .++|.- ....|.......|+.+|.. ++..+-+++++
T Consensus 272 CLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 235666777777662 222211 1123566778888888865 44444444443
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.73 E-value=1.4e+02 Score=37.37 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
-..+|....+.++..|+++.|....-.+.+..+ +..+.-.+..+...|+-..|..++++-.+...
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 346899999999999999999888887777663 56788999999999999999999998875543
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.51 E-value=1.6 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998764
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.34 E-value=64 Score=33.25 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS--KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
.....++++.+....+..-.+.+-.+|. ..+-..|..++.+|..+ ..++-..+|+++.+.. -|.....--+..+.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 4455566666666666666666666655 23555677777777777 4466677777777653 34444444444444
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHc
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPT------IEHYTCVIDMLGRAGQLNEAYELALAMPN----EANPVVWRTLLAASRLH 526 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~ 526 (660)
..++.+.+..+|..+..+ +.|. ...|..|...- ..+.+..+.+..++.. ..-.+.+.-+-.-|...
T Consensus 143 Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 143 EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 447777777777777653 3331 12444444321 2344445555444432 12234444455566667
Q ss_pred CChHHHHHHHHHHHhcCCCCcc
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
.++++|++++..+++.+..+..
T Consensus 219 eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 219 ENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred cCHHHHHHHHHHHhhhcchhhh
Confidence 7777787777777776555443
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.20 E-value=77 Score=34.12 Aligned_cols=179 Identities=14% Similarity=0.142 Sum_probs=109.0
Q ss_pred HHHHHHHHhcCCCC-CHhHHHHHHH----H-HHhcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccC--
Q 048281 395 MRDAQMVFTKMSKK-DVASWNIMIL----G-YGMDGQGKEALDMFSCMCE-------AKLKPDEVTFVGVLSACSHSG-- 459 (660)
Q Consensus 395 ~~~A~~~~~~~~~~-~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g-- 459 (660)
...|.+.++...+. ++..-..+.. + +...++.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45566666665532 3333333332 2 4456789999999998877 55 2234445555565532
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHH
Q 048281 460 ---FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR-AGQLNEAYELALAMPNEANPVVWRTLLAASRL----HGNTDL 531 (660)
Q Consensus 460 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 531 (660)
+.+.|..++...... | .|+...+-..+..... ..+...|.++|........+...-.+...|.. ..+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 677899999988772 3 3444444333333333 24678999999887765555554444443332 237889
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHhCCCcc
Q 048281 532 AEIAAQRVFQLEPGHCGNYVLMSNIYVAG-GKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~ 580 (660)
|...++++-+.++ +.+...++..+.-. ++++.+.-.+..+.+.|.+.
T Consensus 383 A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 383 AFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH
Confidence 9999999988773 33344444443322 78888887777777666543
No 336
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.07 E-value=1.7 Score=26.01 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHcCChHHH
Q 048281 513 PVVWRTLLAASRLHGNTDLA 532 (660)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A 532 (660)
+..|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.20 E-value=11 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 048281 115 AFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFK 162 (660)
Q Consensus 115 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 162 (660)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335666667777777888888888888888888888888888887763
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.24 E-value=3.5 Score=35.76 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC----hHHHHHHHHHH
Q 048281 529 TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK----YEEVLDIRHTM 573 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~ 573 (660)
+++|+.-|++++.++|+...++..++++|...+. ..+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5667788888889999999999999999987653 33444444443
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.11 E-value=1.8e+02 Score=36.44 Aligned_cols=160 Identities=10% Similarity=0.027 Sum_probs=93.1
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHhHhcCChHHHHHHHcc-CCCCCchhHHHHHHHHHhCCC
Q 048281 139 CLIKCCCDVMAVLEVKKIHGLVFKLGL--DLDVYIGSALVNTYLKCQFMEEALKVFEE-LPLRDVVLWNAMVNGYAQIGE 215 (660)
Q Consensus 139 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 215 (660)
++..+--+.+.+..|...++.-..... ......+-.+...|+.-++.|...-+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 444555677788888888877411101 11223444555588888888887776653 33332 2334455667899
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHH-HHHHHHHcCCCHHHHHHHH
Q 048281 216 FHKALEVFRRMSKEGIWMS-RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMN-ALIDMYGKGKCVGEALEIF 293 (660)
Q Consensus 216 ~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~~~~~~A~~~~ 293 (660)
+..|...|+.+.+.+ |+ ..+++-+++.....|.++...-..+-....- .+....++ .=+.+--+.+++|......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999997753 44 6677777777777777766655433332221 22222222 2233335667777666665
Q ss_pred HhcCCCChhhHHHH
Q 048281 294 EMMEEKDIFSWNSI 307 (660)
Q Consensus 294 ~~~~~~~~~~~~~l 307 (660)
. ..+...|.+.
T Consensus 1542 ~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVE 1552 (2382)
T ss_pred h---cccccchhHH
Confidence 5 4455555544
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.03 E-value=12 Score=29.04 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHh
Q 048281 117 KGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKL 163 (660)
Q Consensus 117 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 163 (660)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666677788888888888888888888888888777654
No 341
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.62 E-value=1.3e+02 Score=34.66 Aligned_cols=256 Identities=11% Similarity=-0.012 Sum_probs=136.9
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccC
Q 048281 290 LEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAK 369 (660)
Q Consensus 290 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 369 (660)
..+...+..++...-...+..+.+.+. +++...+....+ .+|...-...+.++...+........+...... +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 455555666777777777777776665 345555555553 344444444555554443211111222222221 2
Q ss_pred CCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 048281 370 NGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFV 449 (660)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 449 (660)
+ ..+....+.++...+.- ....+...+..+|...-...+.++.+.+..+. +..+.. .++...-.
T Consensus 697 d--------~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~ 760 (897)
T PRK13800 697 D--------PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRI 760 (897)
T ss_pred C--------HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHH
Confidence 2 55555666666554321 12334445556666666666666666554322 222222 45666666
Q ss_pred HHHHHHhccCCHHH-HHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048281 450 GVLSACSHSGFLSQ-GREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGN 528 (660)
Q Consensus 450 ~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 528 (660)
....++...+..+. +...+..+.+ .++..+-...+.++.+.|..+.+...+..+...++..+-...+.++...+.
T Consensus 761 ~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 761 AVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred HHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 66667766665432 3344444433 356777778888888888766554445554445666666667777777665
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 529 TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+++...+..+++ +| +...-...+.++.+.+.-..+...+....+
T Consensus 837 -~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 837 -DVAVPALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -cchHHHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 345555555553 33 334455555666554333456666655544
No 342
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=78.54 E-value=65 Score=30.98 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHH--HcCChHHHHHHHHHHhhcCCCCCH
Q 048281 272 VMNALIDMYGKGKCVGEALEIFEMMEEK---DIFSWNSIMTVHE--QCGNHDGTLRLFDRMLSAGFQPDL 336 (660)
Q Consensus 272 ~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~ 336 (660)
++-.-+..+.+.++.+.+.+.+.+|... ....+...+..+. .......+...+..+....+.|..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 3334444444555566666666555432 1223333333331 112334555555555544444444
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.14 E-value=21 Score=31.92 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=51.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CCCCChHHHHHHHHHHhhcCCHH
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRY--GVVPTIEHYTCVIDMLGRAGQLN 498 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 498 (660)
.+.|+ +.|.+.|-++...+.--++.....|...|. ..+.+++++++..+.+-. +-.+|+..+.+|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 677777777777665545444444444444 577888888887776522 22466777788888888877777
Q ss_pred HHH
Q 048281 499 EAY 501 (660)
Q Consensus 499 ~A~ 501 (660)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 344
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.54 E-value=5 Score=40.47 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=67.8
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH
Q 048281 489 DMLGRAGQLNEAYELALAMPN-EANPVV-WRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 566 (660)
+-+...++++.|..++.++.. .|+-.. |..-..++.+.+++..|+.-+.++++++|...-.|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 344566778888888877554 454443 333347888889999999999999999998888898999999999999999
Q ss_pred HHHHHHHHh
Q 048281 567 LDIRHTMRQ 575 (660)
Q Consensus 567 ~~~~~~~~~ 575 (660)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 998888765
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.47 E-value=4.6 Score=22.25 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=11.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 048281 485 TCVIDMLGRAGQLNEAYELAL 505 (660)
Q Consensus 485 ~~l~~~~~~~g~~~~A~~~~~ 505 (660)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 346
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.40 E-value=42 Score=28.30 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=56.6
Q ss_pred HHHhCCCCCh--hHHHHHHHHhHcCCChhHHHHHHccCC---------CCCCcccHHHHHHHHHcCCC-hhHHHHHHHHH
Q 048281 58 MLRTGIIDSP--LSITSLINMYSKCCQMKYALFVFNNLS---------CEPNVFTYNAMISGFYSNDF-AFKGLDFFNHM 125 (660)
Q Consensus 58 ~~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m 125 (660)
|.+.+..++. ...|+++.-.+..+++.....+++ .+ ...+-.+|++++.+..+... ---+..+|..|
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~-~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILE-HLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3444444433 455777777777777777777776 22 12355567777777766554 23466777777
Q ss_pred HHCCCCCCcccHHHHHHHHhhh
Q 048281 126 RQLGVLPDKYTFPCLIKCCCDV 147 (660)
Q Consensus 126 ~~~~~~p~~~t~~~ll~~~~~~ 147 (660)
++.+.+++..-|..++.+|.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 7766777777777777776654
No 347
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.28 E-value=8.7 Score=29.37 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 534 IAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+++.++.+|++......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455556667777777777777777777777777777776554
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=75.76 E-value=89 Score=31.39 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=48.9
Q ss_pred CHHHHHHH---HHHHHHcCChHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-hCCChHHHHHHHHHHHh
Q 048281 512 NPVVWRTL---LAASRLHGNTDLAEIAAQRVFQLEPG-HCGNYVLMSNIYV-AGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 512 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 575 (660)
|...|.++ +..+.+.|-+..|.+..+-++.++|. ||-.....++.|+ +.+.++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 55778899999999999999999999 7766666666664 67888888888877644
No 349
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.53 E-value=73 Score=34.46 Aligned_cols=184 Identities=21% Similarity=0.270 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHH----------HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCC
Q 048281 303 SWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLV----------TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGS 372 (660)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 372 (660)
+-..++-.|....+++..+++.+.+... ||.. .|.-.+.---+-|+-++|....--+++..-...
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va-- 277 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA-- 277 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC--
Confidence 3445556666777788888888877753 4321 222222222345666777666655554322111
Q ss_pred CCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HH
Q 048281 373 CKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVT---FV 449 (660)
Q Consensus 373 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~ 449 (660)
+ ++||-+|++ |..|- +-..|...+..+.|+++|++.-+ +.|+... +.
T Consensus 278 ------p-------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~a 327 (1226)
T KOG4279|consen 278 ------P-------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLA 327 (1226)
T ss_pred ------C-------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHH
Confidence 1 245555542 22221 12345556667888999998877 5676643 33
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048281 450 GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNT 529 (660)
Q Consensus 450 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 529 (660)
.|+.+-.+ .++.-.+ +.. +--.|-..+++.|.++.-.++|+-. +.+.+-.-.+++
T Consensus 328 tLL~aaG~--~Fens~E----lq~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~ 382 (1226)
T KOG4279|consen 328 TLLRAAGE--HFENSLE----LQQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDY 382 (1226)
T ss_pred HHHHHhhh--hccchHH----HHH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCH
Confidence 33333221 1111111 111 1122344567899988888877532 234455567899
Q ss_pred HHHHHHHHHHHhcCCCC
Q 048281 530 DLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 530 ~~A~~~~~~~~~~~p~~ 546 (660)
.+|.+..+.|.+++|..
T Consensus 383 ~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 383 QKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHHHhccCCce
Confidence 99999999999998865
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.01 E-value=15 Score=33.10 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 484 YTCVIDMLGRAGQLNEAYELALA-MPNEA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 484 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.+.-+..+.+.+.+++|+...+. ++.+| |...-..++..++-.|++++|..-++-+-++.|+.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34455667788888888887655 44444 45566777888888999999988888888888865
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.01 E-value=6.2 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 551 VLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 551 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..|+.+|...|+.+.|+++++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888999999999999999887644
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.94 E-value=7.9 Score=40.02 Aligned_cols=101 Identities=16% Similarity=0.025 Sum_probs=75.6
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPT--IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 530 (660)
..-.|+...|...+..+.. ..|. ......|.+.+.+.|-..+|-.++.+... ...+.++..+.+++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3456888888888887753 3332 23455677777888888888888766332 345677888899999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 531 LAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
.|++.|+.++++.|+++..-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999877666655544
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=8.6 Score=35.02 Aligned_cols=84 Identities=15% Similarity=0.005 Sum_probs=34.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHHcCChHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTI-EHYTCVIDMLGRAGQLNEAYELALAMPN-EANPV-VWRTLLAASRLHGNTDL 531 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~ 531 (660)
|.....++.|+..|.+.+. +.|+. .-|..=+-++.+..+++.+..--.+... .|+.+ ...-+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 3334445555554444432 33443 2233344444444454444433333221 23322 22223333344445555
Q ss_pred HHHHHHHHHh
Q 048281 532 AEIAAQRVFQ 541 (660)
Q Consensus 532 A~~~~~~~~~ 541 (660)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555533
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.77 E-value=23 Score=35.87 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=37.7
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE--ANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
...|+++.+.+.+..... -+.....+..++++.....|++++|...-+.|... .++.+...........|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344555555555444433 23333344455555555555555555544444321 12222222222233344455555
Q ss_pred HHHHHHHhcCC
Q 048281 534 IAAQRVFQLEP 544 (660)
Q Consensus 534 ~~~~~~~~~~p 544 (660)
-.+++++.++|
T Consensus 412 ~~wk~~~~~~~ 422 (831)
T PRK15180 412 HYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccCC
Confidence 55555555443
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.76 E-value=11 Score=35.36 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
.++.....|...|.+.+|.++.++++.++|-+...+-.|..+|+..|+--+|.+-+.++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456789999999999999999999999999999999999999999888888877773
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.65 E-value=69 Score=35.99 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 303 SWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888888775
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.60 E-value=52 Score=27.83 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=34.0
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTI---EHYTCVIDMLGRAGQLNEAYELALAMPNEA 511 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 511 (660)
..++.+++..+++.+.- +.|+. .++. ...+...|++++|.++|+++....
T Consensus 22 ~~~d~~D~e~lLdALrv---LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV---LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH---hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 36778888888887753 44443 3333 344568889999999998887643
No 358
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.32 E-value=68 Score=29.06 Aligned_cols=157 Identities=14% Similarity=-0.003 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHh-HHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVA-SWNIMIL--GYGMDGQGKEALDMFSCMCEAKLKPDE--VTFVGVLS 453 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 453 (660)
+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-+.+.-+.. +.|+ ..|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHH-
Confidence 789999999999999999999999988765442 2322222 2334688888888777766653 2222 2222222
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH-HHHhhcCCHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHc
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI-DMLGRAGQLNEAYELALAMPNE------ANPVVWRTLLAASRLH 526 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~l~~~~~~~ 526 (660)
...-++.+|..-+.+--+ + .|..-|...+ ..|.-.=..+.+.+-...-... .-..+|--|..-+...
T Consensus 177 --E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 223356666554433222 2 2333443333 3332222223333333222211 1234677788888999
Q ss_pred CChHHHHHHHHHHHhcC
Q 048281 527 GNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~ 543 (660)
|+.++|..+|+-++..+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999887743
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.31 E-value=39 Score=26.23 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHH
Q 048281 277 IDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFS 340 (660)
Q Consensus 277 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 340 (660)
+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.+|-..| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4566778999999999999988999999877554 5677777777777777766 45555554
No 360
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.79 E-value=1.1e+02 Score=31.37 Aligned_cols=54 Identities=6% Similarity=0.039 Sum_probs=23.8
Q ss_pred HHHcCCCHHHHHHHHHhcCCCChh---hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH
Q 048281 279 MYGKGKCVGEALEIFEMMEEKDIF---SWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL 336 (660)
Q Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 336 (660)
..+..|+.+-+.-+++.-..++.. ...+.+...+..|+. ++.+-+.+.|..++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 334455555555555443332221 112333333444544 344445556666654
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.75 E-value=43 Score=29.34 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 529 TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
+++|...|+++.+.+|++ +.|..-..+. .+|-+++.++.+++...
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 567888888889999988 5565544444 35778888887776543
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.56 E-value=1.4e+02 Score=32.25 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=96.2
Q ss_pred CHHHHHHHHhcCCCC-CHhHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048281 394 SMRDAQMVFTKMSKK-DVASWNIMILGYG----MDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFL 468 (660)
Q Consensus 394 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 468 (660)
+...|.++|...-.. .+.++-.+..+|. -..+...|..++++..+.| .|-..--...+..+.. +..+.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 455666666655432 2333333333322 2346778888888888877 4443322333334444 6666666555
Q ss_pred HHhHHhcCCCCChHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHH
Q 048281 469 PLMESRYGVVPTIEHYTCVIDML---GR----AGQLNEAYELALAMPNEANPVVWRTLLAASRLH----GNTDLAEIAAQ 537 (660)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~ 537 (660)
..+.+ .+.+.....-..+++.. .. ..+.+.+...+.+...+.+......+...|..- .+.+.|...+.
T Consensus 421 ~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~ 499 (552)
T KOG1550|consen 421 LYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYA 499 (552)
T ss_pred HHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHH
Confidence 55554 24332222111111111 11 225566666676666556666666666655443 35777888887
Q ss_pred HHHhcCCCCcchHHHHHHHHHhC---CChHHHHHHHHHHHhC
Q 048281 538 RVFQLEPGHCGNYVLMSNIYVAG---GKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 538 ~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 576 (660)
++-+.. +.....++.++-.. .++..|.++++...+.
T Consensus 500 ~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 500 RASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 776654 56666777776542 1267888888877553
No 363
>PRK10941 hypothetical protein; Provisional
Probab=72.31 E-value=27 Score=33.21 Aligned_cols=66 Identities=12% Similarity=-0.035 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 484 YTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 484 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
.+.+-.+|.+.++++.|++..+.+.. +.++.-+.--+-.|.+.|.+..|..-++..++..|+++.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 44566678889999999998888654 5566678878888999999999999999999998888654
No 364
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.11 E-value=1.6e+02 Score=32.29 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC-------hHHHHHHHHHHhhcCCCCCH
Q 048281 275 ALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGN-------HDGTLRLFDRMLSAGFQPDL 336 (660)
Q Consensus 275 ~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~ 336 (660)
.+|-.+.|+|++++|.++..+..+ +....+...+..|....+ -++...-|++........|.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 456666777777777777733322 233445555555555422 23455555555544332244
No 365
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=16 Score=35.19 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=71.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048281 484 YTCVIDMLGRAGQLNEAYELALAMPN----EA--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY 557 (660)
Q Consensus 484 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 557 (660)
|.-=.+-|.+..++..|...|.+-.. .| +.+.|+.-..+-...|++..|+.-..+++..+|.+.-.|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 33445567888899999999877432 23 3467777777888889999999999999999999999999889999
Q ss_pred HhCCChHHHHHHHHHH
Q 048281 558 VAGGKYEEVLDIRHTM 573 (660)
Q Consensus 558 ~~~g~~~~a~~~~~~~ 573 (660)
....++++|....+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9998877777766554
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.15 E-value=96 Score=29.45 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=75.1
Q ss_pred cCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHhhcCCCCCHHHHHHHHHHHhcccchH-HHH
Q 048281 282 KGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLF----DRMLSAGFQPDLVTFSTVLPACSHLAALM-HGR 356 (660)
Q Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~ 356 (660)
+++++++|++++..- ...+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666665431 23344555554444333 33334466666666555555554333211 223
Q ss_pred HHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048281 357 QIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCM 436 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 436 (660)
++.+.+++.. ... ....-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++
T Consensus 71 ~fi~~ai~WS-~~~--~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~------- 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFG--SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA------- 140 (260)
T ss_dssp HHHHHHHHHH-HTS--S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H-------
T ss_pred HHHHHHHHHH-ccC--CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch-------
Confidence 3333333332 111 111223788889999999999999999887554433333332233222222222222
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 437 CEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 437 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
|...-..++ -|...+++..|...++...+
T Consensus 141 -------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 -------DLFIARAVL-QYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 111222222 34445777888777776665
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.88 E-value=59 Score=27.45 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=37.9
Q ss_pred CchhHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 048281 199 DVVLWNAMVNGYAQIGE-FHKALEVFRRMSKEGIWMSRFTVTGVLSALIMM 248 (660)
Q Consensus 199 ~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 248 (660)
+-..|++++.+..+..- ---+..+|..|++.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55678888888866655 445677888888877888888888888888765
No 368
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.84 E-value=2e+02 Score=32.17 Aligned_cols=222 Identities=12% Similarity=0.032 Sum_probs=118.0
Q ss_pred cccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHH-HHHhcCCHHHHHHHHhcCC--------CCCHhHHHHHHH
Q 048281 348 HLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMD-MYTKCGSMRDAQMVFTKMS--------KKDVASWNIMIL 418 (660)
Q Consensus 348 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~ 418 (660)
...++.+|..+..++...-..++ ......-...+++|-. .....|+++.|.++-+... ...++.+..+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~-~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPM-HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCc-ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777776655433321 0000000223333322 2234688888887766543 235667778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HHhccCCHH--HHHHHHHHhHHhcCCC-----CChHHHHH
Q 048281 419 GYGMDGQGKEALDMFSCMCEAKLKPDEVTF---VGVLS--ACSHSGFLS--QGREFLPLMESRYGVV-----PTIEHYTC 486 (660)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~--~~~~~g~~~--~a~~~~~~~~~~~~~~-----~~~~~~~~ 486 (660)
+..-.|++++|..+.++..+.--.-+...| ..+.. .+..+|... +....+......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999998877654223333332 22222 355667333 3333344333321111 12244555
Q ss_pred HHHHHhhcCCHHHHHHH----HHhCCC-CCCH--H--HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCcchHHH---
Q 048281 487 VIDMLGRAGQLNEAYEL----ALAMPN-EANP--V--VWRTLLAASRLHGNTDLAEIAAQRVFQL--EPGHCGNYVL--- 552 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~----~~~~~~-~~~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~--- 552 (660)
+..++.+ ++.+..- ++-... .|.. . .+..|+......|+.++|.....++..+ ++.....|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555555 3333222 221111 1222 2 2235777888999999999999998876 3321222221
Q ss_pred --HHHHHHhCCChHHHHHHHHHH
Q 048281 553 --MSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 553 --l~~~~~~~g~~~~a~~~~~~~ 573 (660)
-...-..+|+.+++...+.+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 112233578888888877663
No 369
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.82 E-value=94 Score=31.52 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=62.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHHhcCCC--CChHHHHHHHHHHhh
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEV--TFVGVLSACS--HSGFLSQGREFLPLMESRYGVV--PTIEHYTCVIDMLGR 493 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 493 (660)
+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++..... ... -....+..++...-.
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHH
Confidence 44678899999999998886 555554 3444444544 355788888888887663 111 111222333222222
Q ss_pred cCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--HcCChHHHHHHHHHHHh
Q 048281 494 AGQLNEAYELALAMPNEANP-VVWRTLLAASR--LHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 541 (660)
...+.........-..++.. .....+.++-+ ..|+++.|...+-++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11111111111111111111 23333344443 36888888877777766
No 370
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.36 E-value=1.9e+02 Score=31.79 Aligned_cols=191 Identities=11% Similarity=-0.045 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSKK--D-VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
.....-+..-.+.++++.+...+..|... + ..-.-=+.+++...|+.++|...|+++.. .. +|-.++.+ .
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~ 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-Q 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-H
Confidence 33444455555788888888888887631 1 12222255666667888888888888743 12 23333221 1
Q ss_pred ccCCHHHH-HHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 048281 457 HSGFLSQG-REFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIA 535 (660)
Q Consensus 457 ~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 535 (660)
+.|..-.- ......-.......| -..-+..+...|....|...+..+....+......+.......|..+.++..
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11211000 000000000000011 1223445667788889988887766555666667777777788888888877
Q ss_pred HHHHHhcC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 048281 536 AQRVFQLE---PGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKN 581 (660)
Q Consensus 536 ~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 581 (660)
..+....+ -.-|..|......+.+.-.++.+.-.---.++.+..|.
T Consensus 462 ~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 462 TIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 76543211 11233455566666665566665543333356655543
No 371
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.35 E-value=99 Score=28.47 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHhHHhcC-CCCChHH---HHHHHHHHhhcCCHHHHHHHHHhCCC---CCCHHHHHH---HHH---HHHH
Q 048281 459 GFLSQGREFLPLMESRYG-VVPTIEH---YTCVIDMLGRAGQLNEAYELALAMPN---EANPVVWRT---LLA---ASRL 525 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~-~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~---l~~---~~~~ 525 (660)
.++++|+..|+..-+-+. -..+... +--..+.-+..+++.+|+++|+++.. ..+..-|.. ++. ++..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 455556666655544211 1112222 22233334567888999999987643 122222221 111 2223
Q ss_pred cCChHHHHHHHHHHHhcCCCCc
Q 048281 526 HGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
..+.-.+...+++-.+++|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 3666677788888888888643
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.26 E-value=84 Score=27.64 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCCCH-----H-----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 048281 497 LNEAYELALAMPNEANP-----V-----VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG 561 (660)
Q Consensus 497 ~~~A~~~~~~~~~~~~~-----~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 561 (660)
++.|+.+++.+..+-+. . +-...+..|.+.|.+++|.+++++..+ +|++...-.-|..+-.+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 46666666655442111 1 122344578899999999999999888 7776544333333333333
No 373
>PRK13342 recombination factor protein RarA; Reviewed
Probab=68.25 E-value=1.5e+02 Score=30.53 Aligned_cols=116 Identities=12% Similarity=-0.034 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHC---CC-CCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHH
Q 048281 116 FKGLDFFNHMRQL---GV-LPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKV 191 (660)
Q Consensus 116 ~~a~~~~~~m~~~---~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 191 (660)
++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+ .+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 4555555554322 33 34444455555443 5778777777776654321111 1112222
Q ss_pred HccC---CCCCchhHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048281 192 FEEL---PLRDVVLWNAMVNGYAQ---IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMG 249 (660)
Q Consensus 192 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 249 (660)
+... ..++......++.++.+ ..+.+.|+..+..|.+.|..|....-..+..++-..|
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 2211 11222334445555554 4789999999999999887777655555555544443
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.82 E-value=56 Score=25.40 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 048281 386 MDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVG 450 (660)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 450 (660)
+..+...|++++|..+.+....||...|-+|.. -+.|..+++..-+-+|...| .|....|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 445677899999999999998899999977754 35677777777777787776 555555543
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.65 E-value=9.6 Score=21.17 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 548 GNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887653
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.25 E-value=14 Score=27.16 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHhhcCCHHHHHHH
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTI-EHYTCVIDMLGRAGQLNEAYEL 503 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 503 (660)
+.+..++|+..|..+.++..-.++. .++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555432222221 3344455555555555554443
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.09 E-value=12 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=29.3
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHH---HHHHHHHhCCChHHHHHH
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYV---LMSNIYVAGGKYEEVLDI 569 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 569 (660)
...+.++|+..++++++..++.+.-+. .|..+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777776555544343 445567777777777665
No 378
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.74 E-value=55 Score=27.12 Aligned_cols=71 Identities=8% Similarity=-0.054 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHhhcCCH---HHHHHHHHhCCC--CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 478 VPTIEHYTCVIDMLGRAGQL---NEAYELALAMPN--EA--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 478 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
.++..+--.+..++.+..+. .+-+.+++++.. .| ......-|.-++.+.|+++++.+..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 34445555556666665543 334445555432 22 2234445666788999999999999999999998753
No 379
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=65.50 E-value=1.8e+02 Score=30.31 Aligned_cols=50 Identities=8% Similarity=-0.075 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 048281 460 FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN 509 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 509 (660)
+.+...++...+....|...-...+.-+-.-|.-..++.+|++++..+.+
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 44555555555555444444445555555556666666666666665443
No 380
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.83 E-value=13 Score=21.20 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCGNYVLMSN 555 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 555 (660)
|+.+.|..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46678888888888888877776665554
No 381
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.79 E-value=59 Score=34.22 Aligned_cols=129 Identities=19% Similarity=0.119 Sum_probs=75.2
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChh
Q 048281 138 PCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFH 217 (660)
Q Consensus 138 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 217 (660)
+.+...+.++|-.++|.++ ..+|+.. .....+.|+++.|.++..+. .+..-|..|.++....+++.
T Consensus 618 t~va~Fle~~g~~e~AL~~-------s~D~d~r-----Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL-------STDPDQR-----FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhHHhHhhhccchHhhhhc-------CCChhhh-----hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccch
Confidence 3445555555555555443 1222221 22334667777777765433 25566888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHh
Q 048281 218 KALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEM 295 (660)
Q Consensus 218 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 295 (660)
.|.+.|..... |..|+-.+...|+.+....+-....+.|. .|.-.-+|...|+++++.+++.+
T Consensus 684 lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 684 LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 88888877644 45566666677776665555555555552 12223345556666666666544
No 382
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.56 E-value=97 Score=27.02 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=77.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChH-HHHHH--HHHHhhcC
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVT-FVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIE-HYTCV--IDMLGRAG 495 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g 495 (660)
+.+.+..++|+.-|..+.+.|...-+.. .........+.|+...|...|+++-.. .-.|-+. -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 3566778888888888887764332221 112223466788888999999988764 3333322 11111 22345678
Q ss_pred CHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 496 QLNEAYELALAMPNEANP---VVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 496 ~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
.+++.....+.+..+.++ ..-.+|.-+-.+.|++..|.+.|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888877776553332 3455677777888999999998888766
No 383
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.39 E-value=1.3e+02 Score=28.29 Aligned_cols=152 Identities=9% Similarity=0.126 Sum_probs=80.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH---CCCC--CChhhHHHHHHHHHccCCchhHHHHHHHHHHh-CCCCCch----HHH
Q 048281 205 AMVNGYAQIGEFHKALEVFRRMSK---EGIW--MSRFTVTGVLSALIMMGFFKNGRVVHGIVVKM-GYDSGVP----VMN 274 (660)
Q Consensus 205 ~li~~~~~~~~~~~A~~~~~~m~~---~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~----~~~ 274 (660)
.+|..+.+.+++++.+..+.+|.. ..+. -+..+.++++...+.+.+.+.-...++.-.+. .-.-+.. +-+
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 345555555555555555555532 1111 22334555555555555555444444432221 0011111 224
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCCCHHH
Q 048281 275 ALIDMYGKGKCVGEALEIFEMMEEK---------------DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAG-FQPDLVT 338 (660)
Q Consensus 275 ~li~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t 338 (660)
.|...|...+.+.+-.++++++.+. -...|..=|..|....+-.+...+|++..... .-|.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl- 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL- 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-
Confidence 5666777777777777777666421 12467777888888888888888888765432 233333
Q ss_pred HHHHHHHHh-----cccchHHHHH
Q 048281 339 FSTVLPACS-----HLAALMHGRQ 357 (660)
Q Consensus 339 ~~~ll~~~~-----~~~~~~~a~~ 357 (660)
...+|+-|. +.|.+++|..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHh
Confidence 334555553 4466666654
No 384
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.27 E-value=1.3e+02 Score=27.73 Aligned_cols=87 Identities=11% Similarity=0.116 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHh
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMD-GQGKEALDMFSCMCEA--KLKPDE---VTFVGVLSACS 456 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~--g~~p~~---~~~~~ll~~~~ 456 (660)
..-|+.|...|++..|-+..-+ +...|-.. .++++|+..|++.-+- |-..+. ..+.-+...-.
T Consensus 97 ~~aieIyt~~Grf~~aAk~~~~-----------iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 97 EKAIEIYTDMGRFTMAAKHHIE-----------IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred HHHHHHHHhhhHHHHHHhhhhh-----------HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 3445666667776666554322 22222222 3455555555554431 111121 22333333345
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCh
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTI 481 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~ 481 (660)
..+++.+|+.+|+++.+. .+..+.
T Consensus 166 ~leqY~~Ai~iyeqva~~-s~~n~L 189 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS-SLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHH-hccchH
Confidence 567888899998888763 544443
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.20 E-value=28 Score=21.12 Aligned_cols=29 Identities=17% Similarity=-0.055 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCChHHHHHH--HHHHHhcCC
Q 048281 516 WRTLLAASRLHGNTDLAEIA--AQRVFQLEP 544 (660)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~--~~~~~~~~p 544 (660)
|-.+...+...|++++|+.+ ++-+..++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34455556666666666666 335544444
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.62 E-value=28 Score=26.81 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=36.7
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGH---------CGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..+.|++..|.+.+.+..+..... ......++.+....|.+++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345678888877777776642111 12345677788889999999999988754
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=61.52 E-value=1.9e+02 Score=29.40 Aligned_cols=323 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhc
Q 048281 103 NAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKC 182 (660)
Q Consensus 103 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 182 (660)
|-++..|...|+..+|.++.+++.. +......+-++....+.-..|..+.-.+.+.+...+...-+-+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred CC--------hHHHHHHHccCCCCCch---------------------------hHHHHHHHHHhCCChhHHHHHHHHHH
Q 048281 183 QF--------MEEALKVFEELPLRDVV---------------------------LWNAMVNGYAQIGEFHKALEVFRRMS 227 (660)
Q Consensus 183 g~--------~~~A~~~~~~~~~~~~~---------------------------~~~~li~~~~~~~~~~~A~~~~~~m~ 227 (660)
+. ...|...|+.+..+++. ....+|+-|...|+..+..+.++++-
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcC
Q ss_pred HCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCC------Ch
Q 048281 228 KEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEK------DI 301 (660)
Q Consensus 228 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~ 301 (660)
.....|-...+..-+..=.+...-+.|-.+ |-..+...=..+..+.-|..+.+. |+
T Consensus 373 ~~E~~~~f~k~lITLAldrK~~ekEMasvl------------------lS~L~~e~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 373 LPEYNPGFLKLLITLALDRKNSEKEMASVL------------------LSDLHGEVFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred CccccchHHHHHHHHHhccchhHHHHHHHH------------------HHHhhcccCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhC-----ccCCCCCCCC
Q 048281 302 FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNG-----LAKNGSCKDI 376 (660)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 376 (660)
..-...+..|...--.++.+.-+.-=.-.|-.|...+-...++.....=....+-+-....-..| +..-
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~------ 508 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDA------ 508 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHH------
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048281 377 DDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLS 453 (660)
Q Consensus 377 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 453 (660)
..-...|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|+ .|-+.+-.
T Consensus 509 --kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtk 582 (645)
T KOG0403|consen 509 --KDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTK 582 (645)
T ss_pred --HHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhh
Q ss_pred HHhccCC
Q 048281 454 ACSHSGF 460 (660)
Q Consensus 454 ~~~~~g~ 460 (660)
+|.+..+
T Consensus 583 Gf~RV~d 589 (645)
T KOG0403|consen 583 GFERVYD 589 (645)
T ss_pred hhhhhhc
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.16 E-value=56 Score=26.59 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 428 EALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 428 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
+..+-+.......+.|++......+.+|.+.+|+..|.++|+-++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44555666667778999999999999999999999999999988764 3333345655553
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.59 E-value=22 Score=22.83 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc
Q 048281 307 IMTVHEQCGNHDGTLRLFDRMLSA 330 (660)
Q Consensus 307 li~~~~~~g~~~~a~~~~~~m~~~ 330 (660)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456667777777777777776654
No 390
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.52 E-value=2.1e+02 Score=29.55 Aligned_cols=312 Identities=9% Similarity=-0.070 Sum_probs=0.0
Q ss_pred hCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHH
Q 048281 147 VMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRM 226 (660)
Q Consensus 147 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 226 (660)
.+.++...+.++.+...|.....+.+|.-...|.+.|.......+ ...+.|-...-..|+....+...+-
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll---------~el~aL~~~~~~~~~~~~gld~~~~- 99 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLL---------KELEALTADADAPGDVSSGLSLKQG- 99 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHH---------HHHHHHHHhhccccchhcchhhhcc-
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHh----CCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCC---
Q 048281 227 SKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKM----GYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEK--- 299 (660)
Q Consensus 227 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 299 (660)
.+.+....-.+........|.++......+ .-..-..+.......|....+.++|+.++.-+.+.
T Consensus 100 --------t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~ 171 (696)
T KOG2471|consen 100 --------TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAE 171 (696)
T ss_pred --------hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCC
Q 048281 300 ---DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDI 376 (660)
Q Consensus 300 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 376 (660)
+...-+.-.....+.+-...|..-+--.. |.......-++++....++..+..-.+.+....-..
T Consensus 172 ~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s------- 239 (696)
T KOG2471|consen 172 KRMKLVGNHIPANNLLKTLSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS------- 239 (696)
T ss_pred hhccccccccchhhhcccCCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC-------
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH------
Q 048281 377 DDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK------------DVASWNIMILGYGMDGQGKEALDMFSCMCE------ 438 (660)
Q Consensus 377 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 438 (660)
....-.--+.+.-.|++.+|.+++....-. .-..||.|...+.+.|.+.-+..+|.+..+
T Consensus 240 --~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 240 --SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred --cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Q ss_pred -cCCCCCHH----------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 048281 439 -AKLKPDEV----------TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG 492 (660)
Q Consensus 439 -~g~~p~~~----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 492 (660)
.|++|... ......-.+...|++-.|.+.|.+..+ -+..++..|-.|..++.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.23 E-value=36 Score=30.52 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 048281 511 ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 511 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 544 (660)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444444
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.13 E-value=1.2e+02 Score=28.84 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=55.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh--
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEA--KLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG-- 492 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 492 (660)
|.+++..+++.+++...-+--+. .++|. ..-.-|-.|++.+....+.++-..-.+. .-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 66777778877777654443322 23333 3333444578888888888888877764 33333344777776665
Q ss_pred ---hcCCHHHHHHHHHh
Q 048281 493 ---RAGQLNEAYELALA 506 (660)
Q Consensus 493 ---~~g~~~~A~~~~~~ 506 (660)
-.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 47999999998843
No 393
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.09 E-value=1.7e+02 Score=28.14 Aligned_cols=180 Identities=12% Similarity=0.018 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHH
Q 048281 392 CGSMRDAQMVFTKMSK-KDVASWNIMILGYGM----DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH----SGFLS 462 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~ 462 (660)
.+.+..+...+..... .+......+...|.. ..+..+|..+|+.+.+.|..+- ...|...+.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a---~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEA---LFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHH---HHhHHHHHhcCCCcccCHH
Confidence 3455566666665543 233344444444433 3457788888888777763322 2223333333 34888
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHH
Q 048281 463 QGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG-------QLNEAYELALAMPNEANPVVWRTLLAASRL----HGNTDL 531 (660)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 531 (660)
+|..+++.+.+. |..+.......+...|..-+ +...|...+.++....++.....+...|.. ..+.++
T Consensus 131 ~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 131 KALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHH
Confidence 999999998874 66554333444555554431 233678888776655566565666644433 337788
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhCC---------------ChHHHHHHHHHHHhCCC
Q 048281 532 AEIAAQRVFQLEPGHCGNYVLMSNIYVAGG---------------KYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~ 578 (660)
|...|+++-+... ......++ ++...| +...|...+......+.
T Consensus 210 A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 210 AFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 9999999888765 45555666 555544 66677777777666554
No 394
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.69 E-value=80 Score=33.31 Aligned_cols=78 Identities=8% Similarity=-0.101 Sum_probs=43.3
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhh
Q 048281 68 LSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDV 147 (660)
Q Consensus 68 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 147 (660)
...+.+.+.+-++|-.+.|+++-- .||.. .....+.|+.+.|.++..+.. +..-|..|-++....
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~----D~d~r-----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELST----DPDQR-----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCC----Chhhh-----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 466777777778887777776543 11111 122334555555555544332 344466666666666
Q ss_pred CCHHHHHHHHHHH
Q 048281 148 MAVLEVKKIHGLV 160 (660)
Q Consensus 148 ~~~~~a~~~~~~~ 160 (660)
+++..|.+.+...
T Consensus 680 ~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 680 GELPLASECFLRA 692 (794)
T ss_pred ccchhHHHHHHhh
Confidence 6666666555544
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.49 E-value=66 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 302 FSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
.-|..++..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999887
No 396
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=56.14 E-value=16 Score=33.11 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=40.6
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 490 MLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
+....|+.+.|.+++.+... +.....|--+...-.+.|+.+.|.+.+++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566777777777776544 3445677777777778888888888888888887765
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.00 E-value=89 Score=29.58 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=50.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh-
Q 048281 105 MISGFYSNDFAFKGLDFFNHMRQL--GVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLK- 181 (660)
Q Consensus 105 li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 181 (660)
=|++++..|++.+++...-+--+. .++|. ....-|-.|.+.+.+..+.++-...+..--.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 378888888888877665444332 12332 3333344567778888877777776654322233346666665543
Q ss_pred ----cCChHHHHHHH
Q 048281 182 ----CQFMEEALKVF 192 (660)
Q Consensus 182 ----~g~~~~A~~~~ 192 (660)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 36666666665
No 398
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.74 E-value=1.7e+02 Score=27.00 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF 460 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 460 (660)
....-+..|.+.-++.-|...++++.+|=.. .+-+--|.+..+..--.++.+-....+++-+......++ +...|+
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 3344567777778888887777777655211 122233455554444444444445556665555555444 556788
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048281 461 LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVF 540 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (660)
..+|+..++.-...+|.. .+..+|+-. ..|.+.....++..|.. +++++|.+++.++.
T Consensus 208 MRQalNnLQst~~g~g~V--------------------n~enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw 265 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLV--------------------NQENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELW 265 (333)
T ss_pred HHHHHHHHHHHhcccccc--------------------chhhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 888888777766532321 123334333 36888888888887765 78999999999998
Q ss_pred hcCC
Q 048281 541 QLEP 544 (660)
Q Consensus 541 ~~~p 544 (660)
++.-
T Consensus 266 ~lgy 269 (333)
T KOG0991|consen 266 KLGY 269 (333)
T ss_pred HcCC
Confidence 8744
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.04 E-value=1.9e+02 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=23.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 048281 206 MVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTV 238 (660)
Q Consensus 206 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~ 238 (660)
+.+-..+.+++++|+..+.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344456677888888888888888776665543
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=54.88 E-value=2e+02 Score=27.55 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC-----------------hHHHHHHHHHHhhcCCHHHHHH
Q 048281 441 LKPDEVTFVGVLSACSHS-GFLSQGREFLPLMESRYGVVPT-----------------IEHYTCVIDMLGRAGQLNEAYE 502 (660)
Q Consensus 441 ~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~A~~ 502 (660)
+.-|..-|...+.....- -.++++.++...... ++-|+ ..++......|..+|.+.+|.+
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 444555566666544332 345666666665533 22222 1234555677889999999999
Q ss_pred HHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 503 LALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 503 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
+.++... +-+...|..|+..+...||--.|.+.++++-+
T Consensus 301 l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 301 LHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 9998765 55677888999999999998777777766543
No 401
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.66 E-value=78 Score=28.99 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCChH-------HHHHHHHHHHhcC--CCC----cchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 515 VWRTLLAASRLHGNTD-------LAEIAAQRVFQLE--PGH----CGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
++.-+.+.|+..|+.+ .|...|.++.+.. |.. ......++.+..+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4444555666666643 3555555555542 221 3456678899999999999999999987653
No 402
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=54.61 E-value=1.1e+02 Score=24.67 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQ-------LEPGHCG----NYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
|...+..|..++...|++++++.-.++.+. ++.+... +..+-+.++...|+.++|.+.|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 344555666677777777766655555543 3333322 2334556677789999999988864
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.54 E-value=3.3e+02 Score=29.88 Aligned_cols=162 Identities=10% Similarity=0.008 Sum_probs=75.5
Q ss_pred chhhHHHHHHHhh-ccCChhHHHHHHHHHHH----hCCCCCh-hHHHHHHHHhHcCCChhHHHHHHccCC---CC----C
Q 048281 31 TLATCIASLQLCA-HQTNLQKGQEIHSYMLR----TGIIDSP-LSITSLINMYSKCCQMKYALFVFNNLS---CE----P 97 (660)
Q Consensus 31 ~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~----~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~----~ 97 (660)
...++..+...+. -..+++.|...+++... .++..-. .....++..|.+.+... |....++.+ .. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3556666666665 45567777776666522 2222212 22233445555555444 666665321 11 1
Q ss_pred CcccHHHH-HHHHHcCCChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHh--hhCCHHHHHHHHHHHHHhCC------
Q 048281 98 NVFTYNAM-ISGFYSNDFAFKGLDFFNHMRQLG---VLPDKYTFPCLIKCCC--DVMAVLEVKKIHGLVFKLGL------ 165 (660)
Q Consensus 98 ~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~------ 165 (660)
-...+.-+ +..+...+++..|.+.++.+...- ..|-...+..++.+.. +.+..+.+.+..+.+.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 11112222 222222367777777777665432 2233344444444443 33445555555555533221
Q ss_pred ---CCChhHHHHHHHHhH--hcCChHHHHHHHc
Q 048281 166 ---DLDVYIGSALVNTYL--KCQFMEEALKVFE 193 (660)
Q Consensus 166 ---~~~~~~~~~li~~~~--~~g~~~~A~~~~~ 193 (660)
.|-..++..+++.++ ..|+++.+...++
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 123345555555443 4555555555443
No 404
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.68 E-value=20 Score=39.18 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=64.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 048281 423 DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYE 502 (660)
Q Consensus 423 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 502 (660)
++++++.+.+.+...--| .++|..+.+.|..+-|+.+.+.-..++ .....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 355666665554432222 234555667777777777666544432 23457899999988
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 503 LALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
.-.++. +..+|..|+......|+.+-|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 877764 678899999999999999999888887644
No 405
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.52 E-value=1e+02 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC----------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSKK----------DVASWNIMILGYGMDGQGKEALDMFSCMCE 438 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (660)
++|+.+|... +......+++.-..- ...-|..++.-|...|.+++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4566666665 444444444321110 123577788888888888888888888776
No 406
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.48 E-value=1.1e+02 Score=24.18 Aligned_cols=86 Identities=10% Similarity=0.158 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 048281 351 ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEAL 430 (660)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 430 (660)
..++|..|.+.+...+-.. ..+.-.-+..+.+.|+++.|...=.....||...|-+|.. .+.|-.+++.
T Consensus 21 cH~EA~tIa~wL~~~~~~~---------E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e 89 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEME---------EVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALE 89 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTH---------HHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhCCcHH---------HHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHH
Confidence 3466666666666554422 3333344556778888888855555556778888866643 4677777887
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 048281 431 DMFSCMCEAKLKPDEVTF 448 (660)
Q Consensus 431 ~~~~~m~~~g~~p~~~~~ 448 (660)
..+.++..+| .|....|
T Consensus 90 ~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 90 SRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHHCT-S-SHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHH
Confidence 7777776665 4443333
No 407
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=53.25 E-value=60 Score=24.29 Aligned_cols=16 Identities=0% Similarity=0.102 Sum_probs=6.9
Q ss_pred HhHcCCChhHHHHHHc
Q 048281 76 MYSKCCQMKYALFVFN 91 (660)
Q Consensus 76 ~~~~~g~~~~A~~~~~ 91 (660)
..+..|+.+-+.-+++
T Consensus 32 ~A~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 32 YAAENGNLEIVKLLLE 47 (89)
T ss_dssp HHHHTTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3334444444444444
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=53.09 E-value=71 Score=26.03 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHh
Q 048281 117 KGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKL 163 (660)
Q Consensus 117 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 163 (660)
+..+-++.+....+.|++......+++|.+.+|+..|.++++.++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666678888888888888888888888888888877654
No 409
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.04 E-value=1.1e+02 Score=24.14 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 250 FFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
..++|..+.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45566666666655543 222233334456677888888855545555678888876644 367888888888887776
Q ss_pred cCCCCCHHHH
Q 048281 330 AGFQPDLVTF 339 (660)
Q Consensus 330 ~g~~p~~~t~ 339 (660)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 3444444
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=51.92 E-value=27 Score=33.19 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=46.5
Q ss_pred hhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHH
Q 048281 492 GRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVL 552 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 552 (660)
-+.|+.++|..+|+.... +.++.+..-+......+++.-+|.++|-+++...|.+.++...
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 578999999999987433 4456666677777777788888999999998889988665443
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.89 E-value=96 Score=23.44 Aligned_cols=65 Identities=6% Similarity=0.027 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHH
Q 048281 153 VKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKA 219 (660)
Q Consensus 153 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 219 (660)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.++ +....|..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34555556555532 22222222222224567777777777777 6666777777777666665444
No 412
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.57 E-value=2e+02 Score=30.33 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=26.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH------------HHHHHHHHHhccCCHHHHHHHHHHh
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEV------------TFVGVLSACSHSGFLSQGREFLPLM 471 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~------------~~~~ll~~~~~~g~~~~a~~~~~~~ 471 (660)
-...-+++|...|.-.+.. ..|+.. +...+...|..+|+.+-|..+.+..
T Consensus 249 ~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred ecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3445566777766666554 233321 2333334566666666666665554
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.46 E-value=2.2e+02 Score=27.03 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=66.7
Q ss_pred HHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHHccCCch-hHHHHHHHHHHh---C--CCCCchHHHHHHHH
Q 048281 210 YAQIGEFHKALEV----FRRMSKEGIWMSRFTVTGVLSALIMMGFFK-NGRVVHGIVVKM---G--YDSGVPVMNALIDM 279 (660)
Q Consensus 210 ~~~~~~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~---g--~~~~~~~~~~li~~ 279 (660)
+.+.|+...|-++ ++...+.+.++|......++..+...+.-+ .-.++.+.+++. | ...+......+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 4444544443333 223333455566555555555554443222 223333333332 2 22366778888899
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 048281 280 YGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIH 359 (660)
Q Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 359 (660)
|.+.|++.+|+..|-.-..++...+..++..+...|...++ |.+.-..++. +...+++..|...+
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLCLGNLRDANELF 164 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHHTTBHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHHhcCHHHHHHHH
Confidence 99999999999888655444444443333333333333222 3333333333 44456777777766
Q ss_pred HHHHHh
Q 048281 360 GYIVVN 365 (660)
Q Consensus 360 ~~~~~~ 365 (660)
....+.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 414
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.12 E-value=1.1e+02 Score=28.85 Aligned_cols=60 Identities=25% Similarity=0.166 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+-+++...++++.|....++.+.++|.++.-+.--+-+|.+.|...-|++-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 445567888899999999999999999999888888889999999999888888876554
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.75 E-value=84 Score=23.76 Aligned_cols=66 Identities=5% Similarity=-0.042 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHH
Q 048281 51 GQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGL 119 (660)
Q Consensus 51 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 119 (660)
+..+++.+.+.|+ .+......+-.+--..|+.+.|+++++ ..+ .....|..+++++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~-~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLK-RIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHH-Hhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888884 344444444444446688888888888 665 66667888888888777655443
No 416
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.44 E-value=53 Score=29.48 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=38.9
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN 509 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 509 (660)
.....+.+......+.+.+-....|+..+|..++.++...|+.++|.+..+++..
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3355666666666665555456778888888888888888888888887777543
No 417
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.09 E-value=1.8e+02 Score=26.92 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=58.6
Q ss_pred HHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 412 SWNIMILGY--GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 412 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
.|...+.|+ ..++++++|++.+-.- .+.|+-. .-++.++...|+.+.|..+++...- .-.+......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 344555554 4456666776666322 1222222 1356666667788888877776532 2222233333333
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048281 490 MLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHG 527 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 527 (660)
. ..++.+.+|..+-+....+.....|..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 3 556778888877777664333456666666665444
No 418
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=49.57 E-value=63 Score=24.16 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=34.7
Q ss_pred hHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc---cHHHHHHHHhhhCCHHHH
Q 048281 77 YSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKY---TFPCLIKCCCDVMAVLEV 153 (660)
Q Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a 153 (660)
.++.|+++-...+++ .....+. -+..+...+..|+. ++++.+.+.|..|+.. -++.+.. .+..|+.+
T Consensus 4 A~~~~~~~~~~~ll~-~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~-- 73 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE-KGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNLE-- 73 (89)
T ss_dssp HHHTTTHHHHHHHHH-TTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHH--
T ss_pred HHHcCCHHHHHHHHH-CcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCHH--
Confidence 345566666666666 4433333 11133333444443 4444445555555443 2222222 33344433
Q ss_pred HHHHHHHHHhCCCCC
Q 048281 154 KKIHGLVFKLGLDLD 168 (660)
Q Consensus 154 ~~~~~~~~~~g~~~~ 168 (660)
+.+.+.+.|..++
T Consensus 74 --~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 --IVKLLLEHGADVN 86 (89)
T ss_dssp --HHHHHHHTTT-TT
T ss_pred --HHHHHHHcCCCCC
Confidence 4444555555544
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.31 E-value=2.4e+02 Score=26.85 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=23.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCCHHHH
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTF 339 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 339 (660)
.+-..+.+++++|+..+.++...|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34456678888889999888888877776544
No 420
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.12 E-value=33 Score=31.26 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=51.1
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
....++.+.|-+++.+++++-|.....|..++..--+.|+++.|.+.+++..+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 45678999999999999999999999999999999999999999999999987654
No 421
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.01 E-value=74 Score=26.78 Aligned_cols=63 Identities=13% Similarity=-0.027 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 497 LNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 497 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
.+.|.++.+-|. ...............|++..|.++.+.++..+|++...-...+++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 355666666654 233344455667788999999999999999999998888888887776553
No 422
>PHA03100 ankyrin repeat protein; Provisional
Probab=48.80 E-value=3.4e+02 Score=28.46 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=24.3
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHH-----hHcCCChhHHHHHHc
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINM-----YSKCCQMKYALFVFN 91 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~-----~~~~g~~~~A~~~~~ 91 (660)
.+......|+. ++.+.+++.|..++... ....+.. .+..|+.+-+.-+++
T Consensus 38 ~L~~A~~~~~~----~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~ 94 (480)
T PHA03100 38 PLYLAKEARNI----DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE 94 (480)
T ss_pred hhhhhhccCCH----HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH
Confidence 34444455554 44555556665554321 1223333 455566655555555
No 423
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.03 E-value=1.2e+02 Score=23.09 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhCCCh
Q 048281 511 ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH--CGNYVLMSNIYVAGGKY 563 (660)
Q Consensus 511 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 563 (660)
.|......+...+...|+++.|.+.+-.+++.+|+. ...-..++.++...|.-
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 355666667777777777777777777777765543 34455666666666653
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.90 E-value=57 Score=21.35 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=21.4
Q ss_pred HhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048281 144 CCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVN 177 (660)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (660)
..+.|-++++..+++.|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666777777777776666666655544
No 425
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.52 E-value=2.4e+02 Score=29.73 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC--CHhHH---HHHHHHHHhcCChHHHHHHHHHHHH
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSKK--DVASW---NIMILGYGMDGQGKEALDMFSCMCE 438 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~ 438 (660)
..++.-|.+.+++++|..++..|.-. ....| +.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45778899999999999999988632 22233 3334444444434444444554443
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.16 E-value=1.3e+02 Score=24.79 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 531 LAEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 531 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
.+..+|+.|... ....+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677778777664 445566777888888888888888888765
No 427
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=47.05 E-value=2.7e+02 Score=28.22 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=44.4
Q ss_pred CCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH--------hHhcCChHHHHHHHccCCCC--
Q 048281 129 GVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNT--------YLKCQFMEEALKVFEELPLR-- 198 (660)
Q Consensus 129 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~-- 198 (660)
.+.||.++.+.+...++..-..+....+++-..+.+ +|-...+.+||-. -.+...-+++.++++.|+..
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 466777777777666666666666667777666654 2222222222211 12334456666666666532
Q ss_pred --CchhHHHHHHHHH
Q 048281 199 --DVVLWNAMVNGYA 211 (660)
Q Consensus 199 --~~~~~~~li~~~~ 211 (660)
|+.-+-.|...|+
T Consensus 257 ~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYS 271 (669)
T ss_pred cccchhHHHHHHHHh
Confidence 4445555554443
No 428
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.91 E-value=73 Score=20.83 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=20.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 048281 210 YAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLS 243 (660)
Q Consensus 210 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 243 (660)
..+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666777766666666665555543
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.45 E-value=43 Score=32.07 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 048281 303 SWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVL 343 (660)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 343 (660)
-|+..|....+.||+++|++++++..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46789999999999999999999999999877666665443
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.25 E-value=32 Score=32.69 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=33.2
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
..+.|+.++|..+|+.+.. +.| ++....-+........++-+|-..|-+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 4577999999999999875 334 34455555554455566666766665543
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.07 E-value=88 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
..+.......|+.++|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33455667778888888888887775
No 432
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=42.70 E-value=5.4e+02 Score=29.02 Aligned_cols=223 Identities=11% Similarity=-0.029 Sum_probs=117.0
Q ss_pred HhcCChHHHHHHHccCC----CCCc-------hhHHHHHH-HHHhCCChhHHHHHHHHHHHC----CCCCChhhHHHHHH
Q 048281 180 LKCQFMEEALKVFEELP----LRDV-------VLWNAMVN-GYAQIGEFHKALEVFRRMSKE----GIWMSRFTVTGVLS 243 (660)
Q Consensus 180 ~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~-~~~~~~~~~~A~~~~~~m~~~----~~~p~~~t~~~ll~ 243 (660)
....++++|..+..+.. .++. ..|+.+-. .....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888776553 3322 24555543 334568888888888777553 12334455666777
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCCchHHHHHH-----HHHHcCCCH--HHHHHHHHhcCC-----CCh-----hhHHH
Q 048281 244 ALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALI-----DMYGKGKCV--GEALEIFEMMEE-----KDI-----FSWNS 306 (660)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~~~~--~~A~~~~~~~~~-----~~~-----~~~~~ 306 (660)
+..-.|+++.|..+.+...+..-.-++..+.... ..+...|+. .+....|..+.. ... ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778899999988887776664334444333222 234455632 223333333321 111 23444
Q ss_pred HHHHHHHc-CChHHHHHHHHHHhhcCCCCCHHHHH--HHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhH--
Q 048281 307 IMTVHEQC-GNHDGTLRLFDRMLSAGFQPDLVTFS--TVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFM-- 381 (660)
Q Consensus 307 li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-- 381 (660)
+..++.+. +...++..-+.--......|-...+. .+.......|++++|....+.+......++.. .+...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~----~~~~a~~ 661 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH----VDYLAAA 661 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC----chHHHHH
Confidence 44444441 11222222222222222222222222 56677788899999999888887765544300 00111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMS 406 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~ 406 (660)
+..-.......|+...|.....+-.
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1112222345677777766665543
No 433
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.20 E-value=1.9e+02 Score=23.72 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 048281 532 AEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 532 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 571 (660)
...+|..|... ....+..|...+..+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777664 33455667778888888888888888876
No 434
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.99 E-value=2.8e+02 Score=25.44 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCChHHHHHHHHHH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESR-YGVVPTIEHYTCVIDML 491 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 491 (660)
.+.-+..+.+.+...+++...++-++.. +.|..+-..++..++-.|++++|..-++-..+- ....+....|..++++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3455667778888999999888877763 345556667778899999999998777665431 12334456677766542
Q ss_pred hhcCCHHHHH-HHHHhCCCC----CCHHHHHH-HHHHHHHc--CChHHHHHHHHHHHhcCCCC
Q 048281 492 GRAGQLNEAY-ELALAMPNE----ANPVVWRT-LLAASRLH--GNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 492 ~~~g~~~~A~-~~~~~~~~~----~~~~~~~~-l~~~~~~~--g~~~~A~~~~~~~~~~~p~~ 546 (660)
.+. ++|.--..+ .....|-. |..+...+ |..+.+..+-+..++..|..
T Consensus 83 -------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 83 -------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred -------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 222 234322111 12334444 44443332 33444555556666665543
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.54 E-value=38 Score=27.94 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=22.5
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 048281 111 SNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCC 144 (660)
Q Consensus 111 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 144 (660)
..|.-..|..+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345556788888888888887764 66666554
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.50 E-value=16 Score=35.37 Aligned_cols=118 Identities=16% Similarity=0.050 Sum_probs=77.4
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCC
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSH 603 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (660)
...|.++.|++.+-.+++++|..+..|..-+.++.+.+++..|++-+....+.+.....+ ++..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~----------------ykfr 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG----------------YKFR 188 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc----------------cchh
Confidence 446889999999999999999999999999999999999999999888877755433222 2222
Q ss_pred CCHHHHH---HHHHHHHHHHHHcCcccCce--eeccCCChhhhhHhhhHHHHHhhccCC
Q 048281 604 PEAKSIY---AELHSLTARLREHGDCCAGT--LFDSDSTASGFEKHRLYLEEVIAKGSL 657 (660)
Q Consensus 604 ~~~~~~~---~~~~~l~~~m~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (660)
..+.... ..-.+.++.--+.+|.++.. +--+..++.+.+.|..-.+....++.+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~ 247 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREI 247 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcc
Confidence 2222211 11222334444567777653 333345566666666666666665544
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.48 E-value=39 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 048281 415 IMILGYGMDGQGKEALDMFSCMC 437 (660)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~ 437 (660)
.+|.+|.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555444
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.47 E-value=1.7e+02 Score=25.84 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=20.6
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048281 488 IDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAA 522 (660)
Q Consensus 488 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 522 (660)
+-.|.+.|.+++|.+++++....|+......-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 34566777777777777776555554443443333
No 439
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=41.43 E-value=4.4e+02 Score=27.56 Aligned_cols=239 Identities=9% Similarity=0.053 Sum_probs=116.5
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchH------HHHHHHHHHHHhC-ccCCCCCCCCcchhHHHHHHHHHHh
Q 048281 319 GTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALM------HGRQIHGYIVVNG-LAKNGSCKDIDDVFMNNALMDMYTK 391 (660)
Q Consensus 319 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~------~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~ 391 (660)
....+|++..+. -|+...+...|..|...-... ....+++.....+ ..+. ....|..+.-.+..
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~-------~~~~ys~~~l~~~t 370 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSEC-------LYKQYSVLLLCLNT 370 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccc-------hHHHHHHHHHHHhc
Confidence 344666666653 566666766676665443322 2233333333322 2221 14556666666666
Q ss_pred cCCHHH-HHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHH--H
Q 048281 392 CGSMRD-AQMVFTKMSKKDVASWNIMILGYGMDG-QGKEA-LDMFSCMCEAKLKPDEVTFVGVLSACSHSGF-LSQG--R 465 (660)
Q Consensus 392 ~g~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a--~ 465 (660)
.....+ |..+-.+....+...|-.-+....+.. +.+-- .+++......-..+-...+++.. .|+ ++.. .
T Consensus 371 ~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 371 LNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred cchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence 554443 333333444556666655444444221 21111 12222233221222223333322 122 2111 1
Q ss_pred HHHHHhHHhcCCCCChHH-HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 048281 466 EFLPLMESRYGVVPTIEH-YTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASR--LHGNTDLAEIAAQRVF 540 (660)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 540 (660)
.++....+ ...|+..+ -+.+++-+.+.|-.++|..++..+.. +++...+..++..-. ..-+..-+..+|+.+.
T Consensus 446 ~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 23333332 33344433 35677777888888888888877654 456666666665321 1122555677777776
Q ss_pred hcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 541 QLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 541 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
.--..++..|......-...|+-+.+-.++.+.
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 653355566665555555666666666655544
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.39 E-value=2.9e+02 Score=26.71 Aligned_cols=42 Identities=5% Similarity=0.046 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC
Q 048281 155 KIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP 196 (660)
Q Consensus 155 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 196 (660)
++++.+.+.++.|.-+.+.=+.-.+.+.=.+.+.+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555554444444445555556666665554
No 441
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.35 E-value=3.7e+02 Score=26.47 Aligned_cols=142 Identities=11% Similarity=0.045 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh---cCCHHHHHH
Q 048281 426 GKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR---AGQLNEAYE 502 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 502 (660)
.+.-+.+++++++.+ +-+......++..+.+..+.++..+-++.+... .+-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 455677888888773 344456666777888888888888888888873 33466677777765443 223445555
Q ss_pred HHHhC-------CCCC----------CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 503 LALAM-------PNEA----------NP---VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 503 ~~~~~-------~~~~----------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
+|.+. .... +. .++.-+...+...|..+.|..+++-+++++--.|... ....
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~--------~~~~ 195 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL--------SSSS 195 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc--------cccc
Confidence 54432 1111 11 1233334456789999999999999999743222211 1111
Q ss_pred hHHHHHHHHHHHhCCC
Q 048281 563 YEEVLDIRHTMRQQNV 578 (660)
Q Consensus 563 ~~~a~~~~~~~~~~~~ 578 (660)
..+..+.|+...+.++
T Consensus 196 ~~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 196 FSERLESFEEFWESEV 211 (321)
T ss_pred HHHHHHHHHHHhCcCC
Confidence 2266677777766655
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.07 E-value=4.1e+02 Score=26.85 Aligned_cols=27 Identities=7% Similarity=-0.279 Sum_probs=15.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH
Q 048281 419 GYGMDGQGKEALDMFSCMCEAKLKPDE 445 (660)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 445 (660)
.+.+.+++..|.++|+++....++|..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 344556666666666666655444433
No 443
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.06 E-value=4.6e+02 Score=27.47 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCChhH--HHHHHHHhH--cCCChhHHHHHHccCCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHH
Q 048281 53 EIHSYMLRTGIIDSPLS--ITSLINMYS--KCCQMKYALFVFNNLSCEPN---VFTYNAMISGFYSNDFAFKGLDFFNHM 125 (660)
Q Consensus 53 ~~~~~~~~~g~~~~~~~--~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 125 (660)
++.+.+.+.|..++... ....+...+ ..|+.+-+..+++ .+..++ ...++. +...+..|. .-.++++.+
T Consensus 87 ~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~-L~~A~~~~~--~~~~iv~~L 162 (480)
T PHA03100 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIKNSDGENL-LHLYLESNK--IDLKILKLL 162 (480)
T ss_pred HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCccCCCCCcH-HHHHHHcCC--ChHHHHHHH
Confidence 55666777776543221 122333444 7788888777777 443332 223333 333444441 123345555
Q ss_pred HHCCCCCCccc--HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCC
Q 048281 126 RQLGVLPDKYT--FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLD 168 (660)
Q Consensus 126 ~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 168 (660)
.+.|..++... -.+.+..++..|+.+ +.+.+++.|..++
T Consensus 163 l~~g~din~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~ 203 (480)
T PHA03100 163 IDKGVDINAKNRYGYTPLHIAVEKGNID----VIKFLLDNGADIN 203 (480)
T ss_pred HHCCCCcccccCCCCCHHHHHHHhCCHH----HHHHHHHcCCCcc
Confidence 56666554322 123444555556544 3444455565554
No 444
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.06 E-value=1.1e+02 Score=32.29 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=34.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHH
Q 048281 212 QIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALE 291 (660)
Q Consensus 212 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 291 (660)
..|+...|.+.+............+....+.+.....|-.-.|-.++.+..... ...+-++-.+.++|.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345666666655555433222222333333344444444444444443333332 2222333334444444444444444
Q ss_pred HHHh
Q 048281 292 IFEM 295 (660)
Q Consensus 292 ~~~~ 295 (660)
.|++
T Consensus 698 ~~~~ 701 (886)
T KOG4507|consen 698 AFRQ 701 (886)
T ss_pred HHHH
Confidence 4444
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.05 E-value=3.7e+02 Score=26.05 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----------cCCHHH
Q 048281 430 LDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR----------AGQLNE 499 (660)
Q Consensus 430 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 499 (660)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+...+.+|+.+..+ .. -|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQ-----RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hh-----hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 577888888888888888887777777777888888888888763 22 24444444432 477777
Q ss_pred HHHHHHhCC
Q 048281 500 AYELALAMP 508 (660)
Q Consensus 500 A~~~~~~~~ 508 (660)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776654
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.38 E-value=64 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGV 451 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 451 (660)
.-|+..|..-.+.|++++|+.++++..+.|+.--..+|...
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 35677888888888888888888888888876555555433
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.34 E-value=2.2e+02 Score=26.50 Aligned_cols=67 Identities=16% Similarity=0.082 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
.+..+..++...|++-++++.-.++.. +.++..|.--..|....=+.++|..-|.++++++|.-..+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 445556677777888888877777654 3455566666666666678889999999999999865443
No 448
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.18 E-value=46 Score=27.49 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=23.4
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 048281 212 QIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSA 244 (660)
Q Consensus 212 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 244 (660)
..|.-.+|..+|++|++.|-+||. ++.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 446778899999999999988885 4455544
No 449
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=38.18 E-value=4.1e+02 Score=26.29 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=42.3
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEA-LDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQ 463 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 463 (660)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+.. ..+++.+... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 455566666555555554444433333344444444333322222 2333333332 677777777777766655555
Q ss_pred HHHHHHHhHH
Q 048281 464 GREFLPLMES 473 (660)
Q Consensus 464 a~~~~~~~~~ 473 (660)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5454555544
No 450
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.95 E-value=2.5e+02 Score=28.90 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhC
Q 048281 114 FAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLG 164 (660)
Q Consensus 114 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 164 (660)
.+++-+++++.+.+.|- +| ....-|+.|.+.++++.|+..+++-.+.|
T Consensus 69 ~~~e~i~lL~~l~~~g~-ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGG-AD--FLPSTIDAYTRQNRYDEAAVGIKESIKAG 116 (480)
T ss_pred cHHHHHHHHHHHHHccC-CC--ccceeeecccccccHHHHHHHHHhhhhcC
Confidence 45666777777776641 12 34456777888888888888887776643
No 451
>PRK14700 recombination factor protein RarA; Provisional
Probab=37.90 E-value=3.9e+02 Score=25.93 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=37.7
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccc
Q 048281 304 WNSIMTVHEQ---CGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 304 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (660)
+..+|+++.+ -.|.+.|+-++.+|.+.|-.|....-..++.++...|.
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3345666654 47899999999999999999988888888888777663
No 452
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.48 E-value=4.3e+02 Score=28.16 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=60.6
Q ss_pred ccccccccccCCCCCCCCCchhhHHHH---HHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhH-cCCChhHHH
Q 048281 12 SSCFNFSTSSGNQTFNHPFTLATCIAS---LQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYS-KCCQMKYAL 87 (660)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~A~ 87 (660)
..-|.+....-.-.+.+|.+..-|..| |+.+.+.|-+..|.+.-..+.+....-|+...-.+|+.|+ +..+++-.+
T Consensus 319 hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI 398 (665)
T KOG2422|consen 319 HPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII 398 (665)
T ss_pred ccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 344445555555556677666666544 4567788999999999999999887778888899999887 778888888
Q ss_pred HHHcc
Q 048281 88 FVFNN 92 (660)
Q Consensus 88 ~~~~~ 92 (660)
+++++
T Consensus 399 ~~~~~ 403 (665)
T KOG2422|consen 399 ELSNE 403 (665)
T ss_pred HHHHH
Confidence 88874
No 453
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=37.43 E-value=1.7e+02 Score=30.42 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------CcchHH
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG--------HCGNYV 551 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~ 551 (660)
++..|...+.-|...++|++|.++.+-.. +...|.++......+.+..-++..|..+.+.+.- -+..-.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34456667777788888888888877654 4567777777777777777776666665553210 112223
Q ss_pred HHHHHHHhCCChHHHHHHHH
Q 048281 552 LMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 552 ~l~~~~~~~g~~~~a~~~~~ 571 (660)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444445566666665544
No 454
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.27 E-value=6.1e+02 Score=28.03 Aligned_cols=500 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHH--HHhhccCChhHHHHHHHHHH-HhCCCCChhHHHHHHHHhHcC------CChhHHHHHHccCCCCC
Q 048281 27 NHPFTLATCIASL--QLCAHQTNLQKGQEIHSYML-RTGIIDSPLSITSLINMYSKC------CQMKYALFVFNNLSCEP 97 (660)
Q Consensus 27 ~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~------g~~~~A~~~~~~~~~~~ 97 (660)
++.++.....+|+ ++|.-+|.+++|...--..- ...+.+++..+..++.-|... ..+..-. +..-+++.
T Consensus 52 d~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~--~~~~iD~r 129 (929)
T KOG2062|consen 52 DETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPE--QKSPIDQR 129 (929)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCcc--ccCCCCHH
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCC--------CCCcccHHHHHHHHhhhCC-HHHHHHHHHHHHHhCCCCC
Q 048281 98 NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGV--------LPDKYTFPCLIKCCCDVMA-VLEVKKIHGLVFKLGLDLD 168 (660)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~ 168 (660)
=....+.++..|...+++..|+.+.-+-.+.++ .-+....+.++..+....+ .+--.++++.+++.-.+..
T Consensus 130 L~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~ 209 (929)
T KOG2062|consen 130 LRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLP 209 (929)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Q ss_pred hhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 048281 169 VYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMM 248 (660)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 248 (660)
..-|..+..+|.-..+.+.|.++++++.+.|......=|.-.....-..+-+.-..+-....-..+......+++.++-
T Consensus 210 ~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSG- 288 (929)
T KOG2062|consen 210 SPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSG- 288 (929)
T ss_pred CCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcC-
Q ss_pred CCchhHHHHHHHHHHhCCCCCchHHHHHHHHH----HcC-----------------------------------------
Q 048281 249 GFFKNGRVVHGIVVKMGYDSGVPVMNALIDMY----GKG----------------------------------------- 283 (660)
Q Consensus 249 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~----------------------------------------- 283 (660)
+...+++.+..-..-..|....+..-+.. +..
T Consensus 289 ---e~tik~~l~FL~~~N~tD~~iL~~iK~s~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAtAsL 365 (929)
T KOG2062|consen 289 ---EETIKLYLQFLLRHNNTDLLILEEIKESVRNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASL 365 (929)
T ss_pred ---chHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhhhhc
Q ss_pred -----CCHHHHHHHHHhcCCCC---hhhH----HHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccc
Q 048281 284 -----KCVGEALEIFEMMEEKD---IFSW----NSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 284 -----~~~~~A~~~~~~~~~~~---~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (660)
|+...|.+++.-..-.+ ...| ..+.-++...|..+...+++....+. .-+...-....-++.-.|.
T Consensus 366 GvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~--~~~e~v~hG~cLGlGLa~m 443 (929)
T KOG2062|consen 366 GVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKT--AENEVVRHGACLGLGLAGM 443 (929)
T ss_pred ceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHh--ccchhhhhhhhhhccchhc
Q ss_pred hHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHhcC
Q 048281 352 LMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS-------KKDVASWNIMILGYGMDG 424 (660)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g 424 (660)
-..-+++++.+...-...+ ..+-.+-.-+..-..--..-.+.+++|. ...+.-=-.+.-++.--|
T Consensus 444 GSa~~eiYe~lKevLy~D~--------AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~yg 515 (929)
T KOG2062|consen 444 GSANEEIYEKLKEVLYNDS--------AVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYG 515 (929)
T ss_pred ccccHHHHHHHHHHHhccc--------hhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhh
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 048281 425 QGKEALDMFSCMCEAKLKPDEV--TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYE 502 (660)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 502 (660)
+-++|-.+.++|.... .|-.. -...+..+|+-.|+.....+++.-... ....|+.-+..+.-++.-..+.+....
T Consensus 516 rqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~~~~s 592 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPEQLPS 592 (929)
T ss_pred hhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChhhchH
Q ss_pred HHHhCCC--CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCC
Q 048281 503 LALAMPN--EANPVVWRTLLAASRLHGN-TDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 503 ~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~ 546 (660)
+.+-+.+ .|.+..=.++.-+.+..|- ..+|+.+++-+.. +|.+
T Consensus 593 ~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~-D~~~ 638 (929)
T KOG2062|consen 593 TVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS-DPVD 638 (929)
T ss_pred HHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc-ChHH
No 455
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.21 E-value=4.2e+02 Score=26.13 Aligned_cols=119 Identities=7% Similarity=0.006 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc---CChHHHHHH
Q 048281 461 LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH---GNTDLAEIA 535 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~~~A~~~ 535 (660)
.+.-+.+++++++. .+.+......++..+.+..+.++..+.++++.. +.+...|...+...... -.++....+
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 35667888888873 446677888889999998888888888888765 35788999998876652 357777777
Q ss_pred HHHHHhc---CCC--------Cc-------chHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 048281 536 AQRVFQL---EPG--------HC-------GNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKN 581 (660)
Q Consensus 536 ~~~~~~~---~p~--------~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 581 (660)
|.+.++. ... -+ ..+..++..+...|-.+.|..+++.+.+.++-.+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 7777662 111 11 2344556667789999999999999998887443
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.55 E-value=3.3e+02 Score=24.52 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhC
Q 048281 35 CIASLQLCAHQTNLQKGQEIHSYMLRTG 62 (660)
Q Consensus 35 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 62 (660)
.+.+|+.|.-.|+++.|.++|..+++..
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 4668999999999999999999998864
No 457
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=35.18 E-value=68 Score=30.72 Aligned_cols=76 Identities=5% Similarity=-0.042 Sum_probs=46.4
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 478 VPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRT-LLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 478 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
..|+..|...+.-..+.|.+.+.-.++.+... +.++..|-. -..-+..+++++.+..+|.+.+.++|++|..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 33444444444433444555555555555432 334445543 23345678899999999999999999998776543
No 458
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.56 E-value=5.1e+02 Score=26.30 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---------CCCC
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK------KDVASWNIMILGYGMDGQGKEALDMFSCMCEA---------KLKP 443 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p 443 (660)
...+.-+.+.|..+|+++.|.+.|.+... .-+..|-.+|..-...|++........+.... .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34567788899999999999999998652 23456777777777788888888777777653 1233
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048281 444 DEVTFVGVLSACSHSGFLSQGREFLPLME 472 (660)
Q Consensus 444 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 472 (660)
-...+..+...+. +++..|.+.|-...
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCC
Confidence 3344444444333 36666655554443
No 459
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.55 E-value=5.3e+02 Score=26.53 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=29.2
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048281 413 WNIMILGYGM---DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSH 457 (660)
Q Consensus 413 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 457 (660)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3344444444 47889999999999999887775544444444433
No 460
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.49 E-value=4.5e+02 Score=25.67 Aligned_cols=18 Identities=22% Similarity=0.133 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 048281 531 LAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~ 548 (660)
.|.+...++++.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 467777888888886543
No 461
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.96 E-value=3.9e+02 Score=24.76 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=22.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHH
Q 048281 487 VIDMLGRAGQLNEAYELALAMPNEANP-VVWRTLLAASRLHGNTDLAEIAAQR 538 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 538 (660)
++..+.+.|+...|+.+++.+...... .....++.+ ..++.+.+|....+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 444444555555666665554432111 122222222 444555555554444
No 462
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=33.70 E-value=4.6e+02 Score=25.59 Aligned_cols=111 Identities=13% Similarity=0.019 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 460 FLSQGREFLPLMESRYGV---VPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
-.+.|.+.|+.......- ..+......+.....+.|..++-..+++.....++......++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 356788888888773111 34566667777777888887776667766666677888889999998889988888888
Q ss_pred HHHHhcC-CCCcchHHHHHHHHHhCCC--hHHHHHHHH
Q 048281 537 QRVFQLE-PGHCGNYVLMSNIYVAGGK--YEEVLDIRH 571 (660)
Q Consensus 537 ~~~~~~~-p~~~~~~~~l~~~~~~~g~--~~~a~~~~~ 571 (660)
+.++.-+ -........+.. +...+. .+.+.+++.
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAG-LASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHH-HH-CSTTCHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHH-HhcCChhhHHHHHHHHH
Confidence 8888842 122233333333 332333 355655554
No 463
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.67 E-value=5.1e+02 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHh
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS-HSGFLSQGREFLPLM 471 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~ 471 (660)
|..+.+.|-+..|+++.+-+......-|+......|..|+ +.++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3445555666666666666655433224444444444433 445555555555544
No 464
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=33.58 E-value=3.8e+02 Score=27.64 Aligned_cols=96 Identities=11% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCCC--hhHHHHHHHHhHcCCChhHHHHHHccCCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHH
Q 048281 53 EIHSYMLRTGIIDS--PLSITSLINMYSKCCQMKYALFVFNNLSCE---PNVFTYNAMISGFYSNDFAFKGLDFFNHMRQ 127 (660)
Q Consensus 53 ~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 127 (660)
++...+++.|...+ +.|-+.=+.+-|--|+++-...+.+ .... +|..-.+.|+-++.+ |.. ++-+.+.+
T Consensus 98 ~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE-~gad~~IanrhGhTcLmIa~yk-Gh~----~I~qyLle 171 (615)
T KOG0508|consen 98 EVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVE-HGADPEIANRHGHTCLMIACYK-GHV----DIAQYLLE 171 (615)
T ss_pred HHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHH-cCCCCcccccCCCeeEEeeecc-Cch----HHHHHHHH
Confidence 34444455553332 2333344555566677777777765 3322 233333333333222 222 23334444
Q ss_pred CCCCCCcccH--HHHHHHHhhhCCHHHHH
Q 048281 128 LGVLPDKYTF--PCLIKCCCDVMAVLEVK 154 (660)
Q Consensus 128 ~~~~p~~~t~--~~ll~~~~~~~~~~~a~ 154 (660)
.|..+|..++ |+.+.-|+..|.++-.+
T Consensus 172 ~gADvn~ks~kGNTALH~caEsG~vdivq 200 (615)
T KOG0508|consen 172 QGADVNAKSYKGNTALHDCAESGSVDIVQ 200 (615)
T ss_pred hCCCcchhcccCchHHHhhhhcccHHHHH
Confidence 5555555443 56666677777665433
No 465
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.36 E-value=3.9e+02 Score=28.79 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=52.1
Q ss_pred hcCCHHHHHHHHHh-CCC-CC----C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 048281 493 RAGQLNEAYELALA-MPN-EA----N--PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYE 564 (660)
Q Consensus 493 ~~g~~~~A~~~~~~-~~~-~~----~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 564 (660)
+..++..+.+.|.. |.. .. + ......|.-+|....+.|.|.++++++.+.+|.++-.-.....+....|+-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45566666666653 221 11 1 2234555556666677777777777777777777666666666677777777
Q ss_pred HHHHHHHHHHh
Q 048281 565 EVLDIRHTMRQ 575 (660)
Q Consensus 565 ~a~~~~~~~~~ 575 (660)
+|+........
T Consensus 446 ~AL~~~~~~~s 456 (872)
T KOG4814|consen 446 EALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHh
Confidence 77777766644
No 466
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.76 E-value=3.9e+02 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.014 Sum_probs=19.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLK 442 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~ 442 (660)
....|+++.|+++.+.+++.|.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 45789999999999999998853
No 467
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.76 E-value=1.2e+02 Score=21.17 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=16.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
--..+|.++...|++++|.++.+.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334456667777777777777666654
No 468
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=32.46 E-value=1.1e+02 Score=18.95 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 548 GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+|..|+.+-...+++++|..=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999888777643
No 469
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=31.84 E-value=5.2e+02 Score=25.60 Aligned_cols=88 Identities=10% Similarity=0.033 Sum_probs=45.1
Q ss_pred HHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHH-HHHHHHHHCCCCCChhhHHHHHHHHHccCCchh
Q 048281 175 LVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKAL-EVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKN 253 (660)
Q Consensus 175 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 253 (660)
+.+.++|.++.+.+..+-+.+..--.....+|..++-...-.+... .+++.+... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 4455666666655555555444433334444444443333333222 233333322 777777777777777665555
Q ss_pred HHHHHHHHHHhC
Q 048281 254 GRVVHGIVVKMG 265 (660)
Q Consensus 254 a~~~~~~~~~~g 265 (660)
....+..+.+..
T Consensus 249 ~~~~i~~~L~~~ 260 (340)
T PF12069_consen 249 VAILIDALLQSP 260 (340)
T ss_pred HHHHHHHHhcCc
Confidence 555455555443
No 470
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=31.64 E-value=4.8e+02 Score=25.13 Aligned_cols=61 Identities=10% Similarity=0.269 Sum_probs=44.7
Q ss_pred CCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCChHHHHHHHH
Q 048281 265 GYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE-----KDIFSWNSIMTVHEQCGNHDGTLRLFD 325 (660)
Q Consensus 265 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~ 325 (660)
|-.++..+...++..++..+++.+-.++++.... .|...|..+|......|+..-..++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3456677777788888888888888888776543 477888888888888888765554444
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.47 E-value=2.6e+02 Score=23.64 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048281 203 WNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMG 249 (660)
Q Consensus 203 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 249 (660)
-..++..+.+.+..-.|.++++++.+.+...+..|.-..++.+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455555556555666666666666665555555444444444444
No 472
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=31.37 E-value=3e+02 Score=22.65 Aligned_cols=57 Identities=14% Similarity=-0.010 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPNEANPV-VWRTLLAASRLHGNTDLAEIAAQR 538 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 538 (660)
.+..++.-++.-.|..++|.++++...--+.-. .-..++..|....+.++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455555555555566655555544322222 222345555555554444444433
No 473
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=30.90 E-value=4.2e+02 Score=24.43 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH----HHhhcCCHHHHHHHHHh
Q 048281 451 VLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID----MLGRAGQLNEAYELALA 506 (660)
Q Consensus 451 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~ 506 (660)
-|......|+++.|++....+-.. -+..|...+-.|.. -+.|.|..++|+++.+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344556666777776666665432 33333322211111 13567777777777765
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.88 E-value=2.4e+02 Score=24.62 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc
Q 048281 202 LWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFF 251 (660)
Q Consensus 202 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 251 (660)
.-..++..+...+..-.|.++++.+.+.+..++..|.--.|..+...|-+
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33444555555555666777777777766666666655555555555543
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.60 E-value=5.9e+02 Score=25.86 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=44.8
Q ss_pred hHHHHHHHHhHhcCChHHHHHHHccCCC------CCchhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 048281 170 YIGSALVNTYLKCQFMEEALKVFEELPL------RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKE 229 (660)
Q Consensus 170 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 229 (660)
..+.-+...|..+|+++.|.+.+-+... ..+..|-.+|..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3566788889999999999999988542 13446777777777788888888777776553
No 476
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=30.33 E-value=8.8e+02 Score=27.81 Aligned_cols=31 Identities=6% Similarity=-0.097 Sum_probs=13.6
Q ss_pred HHHHHHHCCCCCCccc--HHHHHHHHhhhCCHH
Q 048281 121 FFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVL 151 (660)
Q Consensus 121 ~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~ 151 (660)
+++.+.+.|..||... -.+.+...+..|..+
T Consensus 540 ~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~ 572 (823)
T PLN03192 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYED 572 (823)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 3444445555554432 123344444455544
No 477
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.27 E-value=2.2e+02 Score=30.69 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHhHhcCChH------HHHHHHccCC-CCCchhHHHHHHH
Q 048281 139 CLIKCCCDVMAVLEVKKIHGLVFKLGL--DLDVYIGSALVNTYLKCQFME------EALKVFEELP-LRDVVLWNAMVNG 209 (660)
Q Consensus 139 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 209 (660)
.|+.+|...|++-.+.++++.+....- ..-...+|..|+-..+.|.++ .|.+.++... .-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 677888888888888887777765431 122334555566666666532 2333333322 2255555555554
Q ss_pred HHh
Q 048281 210 YAQ 212 (660)
Q Consensus 210 ~~~ 212 (660)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 433
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.02 E-value=1.3e+02 Score=28.99 Aligned_cols=68 Identities=9% Similarity=-0.007 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHH-HHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 510 EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVL-MSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..|+..|...+..-.+.|.+.+...++.+++...|.+.+.|.. -.--|...++++.++.++.+-.+.+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3678889888888888889999999999999999999887765 3334666788888888877655543
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.68 E-value=2.5e+02 Score=21.17 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHH
Q 048281 282 KGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDG 319 (660)
Q Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (660)
...+.+++.++++.++.++..+|..+..++-..|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34557777888888877777777777777776665443
No 480
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.94 E-value=2.5e+02 Score=21.16 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 048281 390 TKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGK 427 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 427 (660)
....+.+.|.++++.++.++..+|..+..++...|...
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34455667777777777777777777777776665543
No 481
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.49 E-value=3.2e+02 Score=26.13 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
....+..+.+-|++.++.+.+.+...+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 346677788888888888888887765
No 482
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.20 E-value=3.3e+02 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=36.8
Q ss_pred HHHHHHhHhcCChHHHHHHHccCCCC--Cch---hHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 048281 173 SALVNTYLKCQFMEEALKVFEELPLR--DVV---LWNAMVNGYAQIGEFHKALEVFRRMSKE 229 (660)
Q Consensus 173 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~ 229 (660)
..|+.-|.+.+++++|..++..|.-. ... +.+.+...+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45777889999999999999888632 222 3344455556665555555666665543
No 483
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.95 E-value=3.5e+02 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=28.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh-------c-CCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQ-------L-EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~-------~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
|++.++-.||+..|+++++-+-- . -+-+..++..++-+|.-.+|+.+|.+.|...
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443210 0 1123445566666666666666666666654
No 484
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.68 E-value=5e+02 Score=24.14 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 398 AQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 398 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
+..+|.-..+|.+.....|+..+. .+++++|.+++.++.+.|..|... .+.+.+.+-
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 345566566777777777777654 467899999999999999887643 333444443
No 485
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.60 E-value=8.1e+02 Score=26.53 Aligned_cols=26 Identities=0% Similarity=-0.048 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHH
Q 048281 99 VFTYNAMISGFYSNDFAFKGLDFFNHM 125 (660)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~a~~~~~~m 125 (660)
..-|+ .+..+.-.|.++.|..++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44465 788888889999999988543
No 486
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.51 E-value=3.4e+02 Score=22.94 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccc
Q 048281 304 WNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLA 350 (660)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 350 (660)
-..++..+.+.++.-.|.++++++.+.+...+..|.-..+..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34566666667777788888888888776666666655555554444
No 487
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.39 E-value=68 Score=32.78 Aligned_cols=57 Identities=9% Similarity=-0.004 Sum_probs=49.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 521 AASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
.-....++++.|+..+.++++++|+.+..|..-+.++.+.+++..|+.=..+..+..
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 345566889999999999999999999999999999999999999998888887754
No 488
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.32 E-value=1.3e+02 Score=24.13 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=26.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhC
Q 048281 105 MISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVM 148 (660)
Q Consensus 105 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 148 (660)
++..+...+.+-.|.++++.+.+.+..++..|....|+.+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 45555555666677777777777665556555555555554444
No 489
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=27.19 E-value=4.9e+02 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=11.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC
Q 048281 486 CVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 486 ~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
.+..+..+.|+.++|.+.|.++.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444445555555555555543
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.00 E-value=2.2e+02 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=6.7
Q ss_pred HhccCCHHHHHHHHHHh
Q 048281 455 CSHSGFLSQGREFLPLM 471 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~ 471 (660)
|...|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33334444444444333
No 491
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.16 E-value=4.9e+02 Score=28.23 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC------CCHhHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 048281 384 ALMDMYTKCGSMRDAQMVFTKMSK------KDVASWNIMILGYGMDGQGK------EALDMFSCMCEAKLKPDEVTFVGV 451 (660)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 451 (660)
+|..+|...|++..+..+++.... .-...+|..|+.+.++|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 789999999999999999987652 23457888899999999754 3334444433 56688899888
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 048281 452 LSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 452 l~~~~~~g~~~~a~~~~~~~~~ 473 (660)
..+-.+.-.-..+.-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766554444444444444443
No 492
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.85 E-value=4.9e+02 Score=23.35 Aligned_cols=104 Identities=12% Similarity=0.055 Sum_probs=58.2
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCC-
Q 048281 292 IFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKN- 370 (660)
Q Consensus 292 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 370 (660)
+.++.+++..+.|......-++.-+.+++-+.+- ...-.+++-.|.+..++.+++++++.+-+..+..+
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~ 167 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS 167 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3344444455566666666665544444333221 11223455567777788888888888765544332
Q ss_pred -----CCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 048281 371 -----GSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKM 405 (660)
Q Consensus 371 -----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 405 (660)
|..+..+--.+-|.....+.++|.++.|..++++-
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 11111222455666777777777777777777643
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.83 E-value=1.5e+02 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=16.2
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 048281 110 YSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKC 143 (660)
Q Consensus 110 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 143 (660)
.+.|++-+|-++++.+-.....|....+..+|..
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 3456666666666666543222333344444443
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.74 E-value=2.5e+02 Score=24.58 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=17.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 048281 106 ISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCC 145 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 145 (660)
+..+...++.-.|.++++.+.+.+..++..|-.-.|..+.
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 3333333444455555555555544444444333333333
No 495
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.53 E-value=6e+02 Score=25.97 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=53.2
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH--------HhhcCCHHHHHHHHHhCC
Q 048281 437 CEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM--------LGRAGQLNEAYELALAMP 508 (660)
Q Consensus 437 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~ 508 (660)
-...+.||..+.+.+...++..-..+-...+|+-..+ .-.|=...+-+|+-. -.+...-+++.++++.|+
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~q--qaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQ--QADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 3445788888877777766666666777777777766 333443333333321 124456788888888887
Q ss_pred CC---CCHHHHHHHHHHHH
Q 048281 509 NE---ANPVVWRTLLAASR 524 (660)
Q Consensus 509 ~~---~~~~~~~~l~~~~~ 524 (660)
.. .|+.-+.+|...|+
T Consensus 253 ~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 253 AQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hhcccccchhHHHHHHHHh
Confidence 63 35555666666554
No 496
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=7.3e+02 Score=25.09 Aligned_cols=190 Identities=15% Similarity=0.158 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHH--HHHHHcCCCCCHHHHHHHHHHHh
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMF--SCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
..++..++..|...++++.--+.. ....-++|+...|+..+ +-|.-..-.||..|-..++..+.
T Consensus 52 ~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr 117 (439)
T KOG1498|consen 52 TKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLR 117 (439)
T ss_pred HHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Confidence 555666677777666665433221 12234566666665422 22222223566666555554432
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHH
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRT------------LLAASR 524 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------l~~~~~ 524 (660)
..- ++ ++|-+.. ....-..|...+..+|++.+|..++.+.+. .||.+ =++.|.
T Consensus 118 ~Vt---eg-kIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 118 TVT---EG-KIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred Hhh---cC-ceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHH
Confidence 110 00 0111111 122334566778889999999999887653 22222 245688
Q ss_pred HcCChHHHHHHHHHHHhc---CCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEE
Q 048281 525 LHGNTDLAEIAAQRVFQL---EPGH----CGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFI 597 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (660)
..+|+-.|--+-+++... +|+- ...|..+..+....+.+=++-+.++..-..|.......-|..+-..+-.|+
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 889999998888887664 3321 136778888888899999999999988776654443333444433333344
No 497
>PF14044 NETI: NETI protein
Probab=24.94 E-value=67 Score=21.77 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCcccCc
Q 048281 613 LHSLTARLREHGDCCAG 629 (660)
Q Consensus 613 ~~~l~~~m~~~~~~p~~ 629 (660)
+..++..|++.||.|--
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 45667999999999964
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=24.48 E-value=1.7e+02 Score=20.72 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
...++.++..+++..-.++++..+.++...|. .+..+|.--++.++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34455555555555555556666666665552 33444443333333
No 499
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.39 E-value=6.9e+02 Score=24.58 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CCHhHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCH----
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--------KDVASWNI-MILGYGMDGQGKEALDMFSCMCEAKLKPDE---- 445 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---- 445 (660)
...+-....-|++-|+.+.|.+.+.+.-+ -|++.+.. |.-.|..+.-..+-++..+.+.+.|-.-+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 55667778889999999999998876543 24444433 223344555566777777777777754332
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
.+|-.+ .|....++.+|-.+|-+...
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 244433 24556788888888887765
No 500
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.25 E-value=4.5e+02 Score=25.48 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 278 DMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
..+.+.++..+....++.+. .+..-...+..+...|++..|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33344444444444444332 223334556677788888888888877664
Done!