Query 048281
Match_columns 660
No_of_seqs 667 out of 4041
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 13:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.6E-42 1.6E-46 373.1 35.6 481 76-576 62-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.9E-39 3E-43 347.2 32.5 479 65-558 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-26 1.6E-30 232.8 40.8 372 140-562 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-25 5.3E-30 228.9 40.7 353 207-576 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.3E-28 2.1E-32 250.6 18.1 212 117-350 8-224 (501)
6 4g26_A Pentatricopeptide repea 99.9 2.5E-27 8.5E-32 246.1 19.6 182 101-282 28-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.4E-23 8.2E-28 221.2 33.2 437 102-553 9-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-22 6.4E-27 214.3 31.9 427 135-577 7-479 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.7E-21 9.1E-26 201.7 35.1 336 199-573 25-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.5E-21 5E-26 208.6 32.8 419 99-576 25-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-20 4.2E-25 196.6 34.4 306 234-576 25-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.5E-19 5E-24 193.1 37.2 439 31-550 24-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 3E-18 1E-22 172.4 34.8 305 235-576 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 4.7E-18 1.6E-22 171.0 32.6 325 199-560 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 6.7E-18 2.3E-22 167.8 28.8 286 267-563 19-321 (330)
16 2xm6_A Protein corresponding t 99.8 1.7E-16 5.7E-21 167.0 37.2 351 182-559 56-452 (490)
17 3hym_B Cell division cycle pro 99.8 3.1E-17 1.1E-21 163.0 28.7 265 299-576 20-299 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 1E-14 3.5E-19 160.4 49.3 477 35-568 842-1376(1630)
19 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.2E-20 162.1 40.7 411 133-576 12-492 (530)
20 1b89_A Protein (clathrin heavy 99.8 6.8E-18 2.3E-22 166.7 20.9 353 181-578 15-387 (449)
21 1fch_A Peroxisomal targeting s 99.8 2.3E-17 7.8E-22 166.8 24.1 280 282-573 37-356 (368)
22 2xm6_A Protein corresponding t 99.8 4.8E-15 1.6E-19 155.8 41.4 352 198-578 37-434 (490)
23 1b89_A Protein (clathrin heavy 99.8 4.8E-16 1.7E-20 153.5 30.9 280 79-432 15-304 (449)
24 1xi4_A Clathrin heavy chain; a 99.8 1.2E-13 4E-18 152.1 51.0 446 67-575 985-1457(1630)
25 4eqf_A PEX5-related protein; a 99.8 3.5E-17 1.2E-21 165.3 21.2 261 300-572 64-352 (365)
26 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 147.4 28.6 270 278-568 7-286 (291)
27 2ooe_A Cleavage stimulation fa 99.7 6.4E-15 2.2E-19 156.5 36.1 410 96-546 10-496 (530)
28 3cv0_A Peroxisome targeting si 99.7 1.8E-16 6.1E-21 157.2 21.7 271 272-573 23-312 (327)
29 1fch_A Peroxisomal targeting s 99.7 3.2E-16 1.1E-20 158.3 23.5 293 181-541 37-358 (368)
30 4g1t_A Interferon-induced prot 99.7 4.6E-15 1.6E-19 155.4 30.2 282 284-586 152-469 (472)
31 4eqf_A PEX5-related protein; a 99.7 4.9E-16 1.7E-20 156.8 20.8 231 335-576 64-310 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.9E-20 146.7 23.3 246 308-576 6-264 (291)
33 4g1t_A Interferon-induced prot 99.7 2.4E-14 8.3E-19 149.9 29.6 380 134-554 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 2.8E-14 9.6E-19 141.2 25.5 229 200-473 21-268 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 8.8E-17 3E-21 171.2 6.0 131 66-196 126-263 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.6 2.2E-16 7.5E-21 168.2 8.8 125 379-504 127-259 (1134)
37 2pl2_A Hypothetical conserved 99.6 9.6E-15 3.3E-19 135.0 18.1 193 378-573 4-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 4.1E-14 1.4E-18 134.7 21.8 187 379-576 38-236 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-13 8.8E-18 140.4 27.8 372 140-575 9-420 (452)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.6E-14 2.9E-18 134.0 21.6 240 314-570 18-269 (275)
41 3uq3_A Heat shock protein STI1 99.6 5.6E-14 1.9E-18 133.8 19.2 240 302-555 6-255 (258)
42 2vq2_A PILW, putative fimbrial 99.5 6.8E-13 2.3E-17 123.2 22.0 197 378-576 7-211 (225)
43 3u4t_A TPR repeat-containing p 99.5 2.9E-13 9.8E-18 130.1 19.7 244 272-561 5-269 (272)
44 3e4b_A ALGK; tetratricopeptide 99.5 5.7E-13 1.9E-17 137.8 23.1 345 205-579 8-390 (452)
45 2ho1_A Type 4 fimbrial biogene 99.5 5.6E-13 1.9E-17 126.4 21.4 197 379-577 37-239 (252)
46 2q7f_A YRRB protein; TPR, prot 99.5 2E-13 6.9E-18 128.6 17.1 196 379-577 23-223 (243)
47 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4.1E-17 131.0 23.2 246 301-560 97-366 (382)
48 1ouv_A Conserved hypothetical 99.5 5E-12 1.7E-16 121.5 26.7 189 381-578 40-253 (273)
49 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-13 7.8E-18 128.3 16.8 178 379-559 57-239 (243)
50 2ho1_A Type 4 fimbrial biogene 99.5 2E-12 6.8E-17 122.6 22.8 204 301-550 37-246 (252)
51 3vtx_A MAMA; tetratricopeptide 99.5 1.3E-12 4.4E-17 117.3 19.9 166 409-577 4-171 (184)
52 1ouv_A Conserved hypothetical 99.5 8E-12 2.7E-16 120.1 26.4 226 301-547 6-256 (273)
53 2vq2_A PILW, putative fimbrial 99.5 4.5E-12 1.5E-16 117.6 23.6 173 379-553 42-222 (225)
54 3u4t_A TPR repeat-containing p 99.5 2.3E-12 7.9E-17 123.7 20.9 220 346-577 13-251 (272)
55 2pl2_A Hypothetical conserved 99.5 3.4E-12 1.2E-16 117.8 20.8 190 304-507 8-211 (217)
56 2h6f_A Protein farnesyltransfe 99.5 1.3E-12 4.4E-17 130.8 19.3 226 337-575 98-347 (382)
57 4a1s_A PINS, partner of inscut 99.5 8.4E-13 2.9E-17 135.4 18.5 265 307-576 54-372 (411)
58 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5.2E-17 133.0 19.2 197 379-575 87-335 (406)
59 3ro2_A PINS homolog, G-protein 99.5 2.4E-12 8.2E-17 127.6 20.1 264 308-576 12-332 (338)
60 4abn_A Tetratricopeptide repea 99.5 6.4E-13 2.2E-17 138.3 15.4 190 379-572 102-317 (474)
61 4e6h_A MRNA 3'-END-processing 99.4 7.1E-10 2.4E-14 118.5 38.4 415 95-547 62-575 (679)
62 3sf4_A G-protein-signaling mod 99.4 2.2E-12 7.4E-17 131.9 17.2 170 395-564 163-364 (406)
63 3vtx_A MAMA; tetratricopeptide 99.4 5.9E-12 2E-16 112.9 17.0 166 379-547 5-175 (184)
64 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.9E-12 2E-16 121.0 17.7 237 283-536 18-269 (275)
65 4e6h_A MRNA 3'-END-processing 99.4 4E-09 1.4E-13 112.7 37.8 419 28-474 62-570 (679)
66 4a1s_A PINS, partner of inscut 99.4 6.9E-12 2.4E-16 128.5 16.1 205 338-545 128-375 (411)
67 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.3E-16 133.6 18.3 162 410-575 9-173 (723)
68 3ulq_A Response regulator aspa 99.4 1.6E-10 5.3E-15 117.1 24.8 164 379-542 184-368 (383)
69 3ro2_A PINS homolog, G-protein 99.3 2.4E-11 8E-16 120.4 18.0 151 395-545 159-335 (338)
70 2ond_A Cleavage stimulation fa 99.3 1.9E-10 6.5E-15 112.5 23.9 218 318-548 33-276 (308)
71 3as5_A MAMA; tetratricopeptide 99.3 3.5E-11 1.2E-15 107.7 16.8 162 379-575 8-172 (186)
72 4i17_A Hypothetical protein; T 99.3 4E-11 1.4E-15 111.6 17.0 187 379-576 7-209 (228)
73 2ond_A Cleavage stimulation fa 99.3 1.3E-10 4.5E-15 113.6 21.2 212 353-577 33-271 (308)
74 3ulq_A Response regulator aspa 99.3 2.2E-11 7.6E-16 123.4 15.9 228 344-575 111-367 (383)
75 3nf1_A KLC 1, kinesin light ch 99.3 6.7E-12 2.3E-16 123.0 11.1 197 379-575 69-306 (311)
76 3as5_A MAMA; tetratricopeptide 99.3 1.6E-10 5.6E-15 103.2 18.6 136 378-548 41-179 (186)
77 4i17_A Hypothetical protein; T 99.3 1.9E-10 6.6E-15 107.0 18.7 153 409-563 6-169 (228)
78 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.6E-15 121.6 18.6 178 395-576 84-287 (474)
79 1hz4_A MALT regulatory protein 99.3 4.5E-09 1.5E-13 105.9 29.7 266 308-576 21-322 (373)
80 3nf1_A KLC 1, kinesin light ch 99.3 1.7E-11 5.8E-16 120.1 11.2 242 303-545 29-310 (311)
81 3q15_A PSP28, response regulat 99.2 2.4E-09 8.3E-14 108.0 24.5 164 379-542 182-365 (378)
82 3q15_A PSP28, response regulat 99.2 3.3E-10 1.1E-14 114.5 17.7 226 346-575 111-364 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 4E-10 1.4E-14 122.0 16.0 164 377-544 7-176 (723)
84 3qky_A Outer membrane assembly 99.1 2.4E-09 8.2E-14 101.8 18.9 205 379-623 15-248 (261)
85 2pzi_A Probable serine/threoni 99.1 1.5E-09 5.2E-14 118.1 18.9 169 390-562 402-583 (681)
86 1hz4_A MALT regulatory protein 99.1 7.1E-08 2.4E-12 97.0 27.9 262 208-473 22-321 (373)
87 3edt_B KLC 2, kinesin light ch 99.1 1.3E-09 4.4E-14 104.8 14.2 228 347-575 12-280 (283)
88 4ga2_A E3 SUMO-protein ligase 99.1 2.4E-10 8.2E-15 98.2 7.3 141 418-562 5-149 (150)
89 2fo7_A Synthetic consensus TPR 99.0 3.8E-09 1.3E-13 88.5 13.9 123 451-575 7-131 (136)
90 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.7E-08 5.8E-13 93.4 19.5 181 379-578 4-215 (225)
91 1qqe_A Vesicular transport pro 99.0 2.7E-09 9.3E-14 103.2 13.9 194 382-575 40-268 (292)
92 3qky_A Outer membrane assembly 99.0 5.1E-09 1.7E-13 99.5 15.2 166 379-565 52-250 (261)
93 2fo7_A Synthetic consensus TPR 99.0 8.6E-09 2.9E-13 86.2 15.0 131 412-545 3-135 (136)
94 1qqe_A Vesicular transport pro 99.0 5.7E-09 2E-13 101.0 15.1 214 285-548 32-275 (292)
95 3mv2_B Coatomer subunit epsilo 99.0 6.6E-08 2.3E-12 91.6 21.4 163 409-576 99-282 (310)
96 3rjv_A Putative SEL1 repeat pr 99.0 4.5E-08 1.5E-12 89.5 19.9 172 398-578 5-199 (212)
97 3qou_A Protein YBBN; thioredox 99.0 1E-08 3.5E-13 98.8 15.7 175 396-574 103-282 (287)
98 4ga2_A E3 SUMO-protein ligase 99.0 9.8E-10 3.4E-14 94.3 7.3 122 451-575 3-128 (150)
99 3edt_B KLC 2, kinesin light ch 98.9 1.7E-08 5.9E-13 96.8 16.7 204 338-542 45-281 (283)
100 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.8E-12 88.8 22.2 241 279-549 22-289 (310)
101 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.9E-13 108.5 15.2 160 392-554 2-169 (568)
102 2r5s_A Uncharacterized protein 98.9 1E-08 3.5E-13 90.7 11.3 155 382-574 9-171 (176)
103 2vgx_A Chaperone SYCD; alterna 98.9 5.9E-09 2E-13 89.1 9.3 97 480-576 20-118 (148)
104 3gyz_A Chaperone protein IPGC; 98.9 9.5E-09 3.3E-13 87.7 10.5 101 477-577 31-134 (151)
105 3urz_A Uncharacterized protein 98.9 4.1E-08 1.4E-12 89.5 15.2 164 379-546 4-190 (208)
106 4gco_A Protein STI-1; structur 98.8 3.6E-08 1.2E-12 81.5 12.1 94 482-575 14-109 (126)
107 2pzi_A Probable serine/threoni 98.8 8.5E-08 2.9E-12 104.3 18.4 189 347-548 402-608 (681)
108 2vsy_A XCC0866; transferase, g 98.8 5.2E-08 1.8E-12 104.1 16.2 152 423-577 2-158 (568)
109 4gco_A Protein STI-1; structur 98.8 3.7E-08 1.3E-12 81.4 11.7 109 446-556 14-124 (126)
110 3urz_A Uncharacterized protein 98.8 4.6E-08 1.6E-12 89.1 12.5 161 412-577 6-187 (208)
111 3dra_A Protein farnesyltransfe 98.8 1.3E-06 4.6E-11 83.6 22.3 149 424-575 124-286 (306)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5E-12 86.1 15.2 96 480-575 36-149 (213)
113 2xcb_A PCRH, regulatory protei 98.8 9E-08 3.1E-12 81.1 12.5 96 481-576 18-115 (142)
114 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.8E-07 9.6E-12 85.1 16.7 149 380-549 42-220 (225)
115 2ifu_A Gamma-SNAP; membrane fu 98.7 3.6E-07 1.2E-11 88.9 17.9 186 381-569 38-254 (307)
116 2uy1_A Cleavage stimulation fa 98.7 3.5E-06 1.2E-10 87.3 26.1 125 411-541 287-412 (493)
117 2uy1_A Cleavage stimulation fa 98.7 1.3E-05 4.6E-10 83.0 30.3 201 218-437 197-411 (493)
118 2r5s_A Uncharacterized protein 98.7 1.6E-07 5.5E-12 82.9 13.7 125 378-505 39-168 (176)
119 1a17_A Serine/threonine protei 98.7 1.6E-07 5.6E-12 81.7 13.1 127 447-575 15-145 (166)
120 3qou_A Protein YBBN; thioredox 98.7 2.2E-07 7.5E-12 89.4 15.0 134 442-577 114-249 (287)
121 2lni_A Stress-induced-phosphop 98.7 1.6E-07 5.6E-12 78.1 12.2 116 445-562 16-133 (133)
122 3u3w_A Transcriptional activat 98.7 2.2E-06 7.4E-11 82.8 21.7 162 414-575 79-265 (293)
123 3dra_A Protein farnesyltransfe 98.7 1.1E-05 3.7E-10 77.3 26.0 226 316-555 48-301 (306)
124 2e2e_A Formate-dependent nitri 98.7 1.6E-07 5.5E-12 83.0 12.6 120 456-577 21-145 (177)
125 1na0_A Designed protein CTPR3; 98.7 2E-07 7E-12 76.4 12.5 114 446-561 10-125 (125)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.4E-07 1.2E-11 83.6 15.1 146 381-546 8-154 (213)
127 2vyi_A SGTA protein; chaperone 98.7 1.8E-07 6.3E-12 77.4 11.7 117 445-563 12-130 (131)
128 3upv_A Heat shock protein STI1 98.7 1.5E-07 5.1E-12 77.8 10.9 96 481-576 4-101 (126)
129 2c2l_A CHIP, carboxy terminus 98.7 5.1E-08 1.7E-12 93.5 8.9 189 379-576 4-199 (281)
130 1p5q_A FKBP52, FK506-binding p 98.6 2.1E-07 7.3E-12 91.7 12.4 142 410-573 147-291 (336)
131 2ifu_A Gamma-SNAP; membrane fu 98.6 3.4E-07 1.2E-11 89.1 13.8 196 349-574 4-222 (307)
132 2qfc_A PLCR protein; TPR, HTH, 98.6 9.5E-07 3.2E-11 85.3 16.8 164 412-575 77-265 (293)
133 3rjv_A Putative SEL1 repeat pr 98.6 2.4E-06 8.3E-11 77.8 17.8 161 379-544 18-199 (212)
134 1hxi_A PEX5, peroxisome target 98.6 2E-07 6.7E-12 76.4 8.4 95 483-577 19-115 (121)
135 2vgx_A Chaperone SYCD; alterna 98.5 2.2E-07 7.5E-12 79.2 9.0 102 446-549 22-125 (148)
136 3u3w_A Transcriptional activat 98.5 4.8E-06 1.6E-10 80.3 19.3 160 383-542 79-266 (293)
137 2kck_A TPR repeat; tetratricop 98.5 3.2E-07 1.1E-11 73.6 9.2 98 481-578 6-108 (112)
138 4f3v_A ESX-1 secretion system 98.5 1.2E-06 4.1E-11 81.9 14.1 192 348-553 18-247 (282)
139 4f3v_A ESX-1 secretion system 98.5 1.1E-06 3.8E-11 82.1 13.8 181 391-576 18-237 (282)
140 3gyz_A Chaperone protein IPGC; 98.5 6E-07 2.1E-11 76.4 10.8 99 447-547 38-138 (151)
141 3q49_B STIP1 homology and U bo 98.5 7.1E-07 2.4E-11 74.8 11.3 98 479-576 7-106 (137)
142 3sz7_A HSC70 cochaperone (SGT) 98.5 4.8E-07 1.6E-11 78.7 10.4 94 482-575 12-107 (164)
143 2e2e_A Formate-dependent nitri 98.5 6.2E-07 2.1E-11 79.1 11.3 127 421-550 21-152 (177)
144 1elw_A TPR1-domain of HOP; HOP 98.5 1.3E-06 4.6E-11 70.6 12.2 108 447-556 6-115 (118)
145 4gcn_A Protein STI-1; structur 98.5 4.2E-07 1.4E-11 75.1 9.1 94 482-575 9-111 (127)
146 2qfc_A PLCR protein; TPR, HTH, 98.5 7.8E-06 2.7E-10 78.8 19.3 163 380-542 76-266 (293)
147 2fbn_A 70 kDa peptidylprolyl i 98.5 7.9E-07 2.7E-11 80.1 11.3 171 385-576 10-186 (198)
148 3upv_A Heat shock protein STI1 98.5 1E-06 3.6E-11 72.6 10.8 111 446-558 5-123 (126)
149 2xcb_A PCRH, regulatory protei 98.5 7.6E-07 2.6E-11 75.3 10.1 105 447-553 20-126 (142)
150 3sz7_A HSC70 cochaperone (SGT) 98.5 1.5E-06 5E-11 75.6 12.1 108 445-554 11-120 (164)
151 1elw_A TPR1-domain of HOP; HOP 98.5 1.2E-06 4.2E-11 70.8 10.7 98 480-577 3-102 (118)
152 2lni_A Stress-induced-phosphop 98.4 1.1E-06 3.8E-11 72.9 10.1 99 478-576 13-113 (133)
153 1na0_A Designed protein CTPR3; 98.4 1.6E-06 5.5E-11 70.9 10.9 96 481-576 9-106 (125)
154 1a17_A Serine/threonine protei 98.4 5.1E-06 1.8E-10 72.0 14.1 129 411-542 14-146 (166)
155 3gw4_A Uncharacterized protein 98.4 1.9E-06 6.4E-11 77.8 11.6 129 447-575 28-175 (203)
156 3gw4_A Uncharacterized protein 98.4 3.2E-06 1.1E-10 76.3 13.1 153 390-542 3-176 (203)
157 3rkv_A Putative peptidylprolyl 98.4 3.1E-06 1E-10 73.4 11.8 65 512-576 62-126 (162)
158 2dba_A Smooth muscle cell asso 98.4 4.4E-06 1.5E-10 70.8 12.3 108 448-558 31-144 (148)
159 3q49_B STIP1 homology and U bo 98.3 2.4E-06 8.3E-11 71.5 10.3 100 444-545 8-109 (137)
160 2dba_A Smooth muscle cell asso 98.3 4.2E-06 1.4E-10 70.9 11.5 98 479-576 26-128 (148)
161 2hr2_A Hypothetical protein; a 98.3 3.1E-06 1.1E-10 71.2 10.2 63 514-576 58-131 (159)
162 2xev_A YBGF; tetratricopeptide 98.3 3.4E-06 1.2E-10 69.6 10.3 91 486-576 7-105 (129)
163 2fbn_A 70 kDa peptidylprolyl i 98.3 6.9E-07 2.3E-11 80.6 6.3 95 482-576 39-151 (198)
164 3q7a_A Farnesyltransferase alp 98.3 5.1E-05 1.8E-09 73.4 19.6 111 463-575 185-330 (349)
165 2vyi_A SGTA protein; chaperone 98.3 9.8E-06 3.4E-10 66.7 12.8 116 411-529 13-130 (131)
166 3q7a_A Farnesyltransferase alp 98.3 0.00036 1.2E-08 67.5 25.0 230 312-555 65-345 (349)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6.2E-06 2.1E-10 85.0 13.4 144 410-575 268-414 (457)
168 1wao_1 Serine/threonine protei 98.2 1.6E-06 5.5E-11 89.8 8.2 116 454-571 15-134 (477)
169 1elr_A TPR2A-domain of HOP; HO 98.2 4E-06 1.4E-10 69.2 8.8 95 482-576 5-108 (131)
170 1p5q_A FKBP52, FK506-binding p 98.2 1.4E-05 4.7E-10 78.6 14.1 94 379-473 147-258 (336)
171 3dss_A Geranylgeranyl transfer 98.2 0.00011 3.9E-09 70.6 19.9 179 395-576 90-304 (331)
172 1hxi_A PEX5, peroxisome target 98.2 4.8E-06 1.6E-10 67.9 8.8 97 449-547 21-119 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.2 5.7E-06 1.9E-10 68.2 9.5 108 448-558 7-123 (131)
174 2kck_A TPR repeat; tetratricop 98.2 5.7E-06 1.9E-10 66.0 9.0 99 447-547 8-111 (112)
175 1wao_1 Serine/threonine protei 98.2 6.6E-06 2.2E-10 85.1 11.7 114 421-537 17-134 (477)
176 2c2l_A CHIP, carboxy terminus 98.2 7.2E-06 2.4E-10 78.4 11.1 113 444-558 3-117 (281)
177 2xev_A YBGF; tetratricopeptide 98.2 2.1E-05 7.1E-10 64.8 12.3 103 451-555 8-118 (129)
178 3k9i_A BH0479 protein; putativ 98.2 1.7E-06 5.9E-11 70.2 5.2 82 494-575 3-89 (117)
179 3rkv_A Putative peptidylprolyl 98.2 4.6E-06 1.6E-10 72.2 8.0 76 481-556 63-141 (162)
180 3dss_A Geranylgeranyl transfer 98.1 0.00065 2.2E-08 65.3 23.0 230 313-557 41-319 (331)
181 1ihg_A Cyclophilin 40; ppiase 98.1 1.1E-05 3.7E-10 80.4 11.0 138 411-569 224-363 (370)
182 4gcn_A Protein STI-1; structur 98.1 1.3E-05 4.3E-10 66.1 9.7 105 412-545 10-115 (127)
183 3ro3_A PINS homolog, G-protein 98.1 2E-05 7E-10 67.6 11.3 93 483-575 51-157 (164)
184 2if4_A ATFKBP42; FKBP-like, al 98.1 4.1E-06 1.4E-10 82.5 7.5 147 410-576 179-328 (338)
185 3k9i_A BH0479 protein; putativ 98.1 2.2E-06 7.6E-11 69.5 4.6 92 458-550 3-98 (117)
186 4b4t_Q 26S proteasome regulato 98.1 5E-05 1.7E-09 77.8 15.7 189 386-574 11-243 (434)
187 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4.2E-10 79.1 10.3 150 379-547 179-333 (338)
188 3ma5_A Tetratricopeptide repea 98.1 1.6E-05 5.5E-10 62.2 9.0 67 510-576 4-70 (100)
189 1dce_A Protein (RAB geranylger 98.0 0.00016 5.6E-09 76.1 18.6 171 392-565 42-244 (567)
190 2l6j_A TPR repeat-containing p 98.0 1.5E-06 5E-11 69.7 2.4 93 480-572 3-103 (111)
191 3ro3_A PINS homolog, G-protein 98.0 2.8E-05 9.6E-10 66.7 10.1 131 413-543 12-159 (164)
192 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 4.2E-05 1.4E-09 78.7 12.9 65 513-577 317-381 (457)
193 1ihg_A Cyclophilin 40; ppiase 98.0 3.4E-05 1.2E-09 76.7 11.4 114 445-576 223-336 (370)
194 1na3_A Designed protein CTPR2; 98.0 2.4E-05 8.2E-10 59.7 7.9 81 481-561 9-91 (91)
195 3n71_A Histone lysine methyltr 98.0 3.8E-05 1.3E-09 78.8 11.5 123 455-577 319-465 (490)
196 2hr2_A Hypothetical protein; a 97.9 3.1E-05 1.1E-09 65.1 8.7 71 483-553 59-142 (159)
197 2kat_A Uncharacterized protein 97.9 2E-05 6.7E-10 63.5 6.9 77 500-576 4-82 (115)
198 4b4t_Q 26S proteasome regulato 97.9 0.00013 4.6E-09 74.5 14.7 159 417-575 11-203 (434)
199 1zu2_A Mitochondrial import re 97.8 1.1E-05 3.6E-10 67.8 3.8 85 493-577 14-121 (158)
200 1klx_A Cysteine rich protein B 97.8 0.00029 9.8E-09 58.7 12.0 111 460-578 10-128 (138)
201 3bee_A Putative YFRE protein; 97.7 0.0002 7E-09 54.6 9.3 69 510-578 3-74 (93)
202 3n71_A Histone lysine methyltr 97.6 0.00012 4E-09 75.3 8.7 115 490-622 318-450 (490)
203 2l6j_A TPR repeat-containing p 97.6 0.00018 6E-09 57.1 7.9 66 512-577 3-68 (111)
204 1klx_A Cysteine rich protein B 97.6 0.00085 2.9E-08 55.8 11.7 111 424-543 9-127 (138)
205 3qwp_A SET and MYND domain-con 97.5 0.00021 7.3E-09 72.2 9.1 115 489-621 295-427 (429)
206 2kat_A Uncharacterized protein 97.5 0.00027 9.3E-09 56.6 8.0 82 463-546 3-86 (115)
207 1dce_A Protein (RAB geranylger 97.5 0.0016 5.4E-08 68.6 15.7 149 424-576 43-221 (567)
208 1zu2_A Mitochondrial import re 97.5 8.4E-05 2.9E-09 62.3 4.6 50 498-547 63-125 (158)
209 1na3_A Designed protein CTPR2; 97.5 0.0004 1.4E-08 52.6 7.9 65 512-576 8-72 (91)
210 3lvg_A Clathrin heavy chain 1; 97.3 0.00015 5.2E-09 71.1 4.9 238 66-322 53-325 (624)
211 3qww_A SET and MYND domain-con 97.3 0.0003 1E-08 71.0 6.6 102 494-613 311-430 (433)
212 1pc2_A Mitochondria fission pr 97.2 0.00098 3.4E-08 55.2 8.0 66 510-575 29-99 (152)
213 2kc7_A BFR218_protein; tetratr 97.2 0.0012 4.1E-08 50.9 8.0 79 487-573 6-87 (99)
214 3ly7_A Transcriptional activat 97.1 0.012 4E-07 56.9 15.1 138 407-546 191-343 (372)
215 2kc7_A BFR218_protein; tetratr 97.1 0.0013 4.4E-08 50.7 6.9 60 518-577 5-65 (99)
216 3ma5_A Tetratricopeptide repea 97.0 0.0031 1.1E-07 48.8 8.6 63 410-473 7-69 (100)
217 1wy6_A Hypothetical protein ST 96.9 0.085 2.9E-06 41.8 15.4 141 420-579 17-157 (172)
218 3qww_A SET and MYND domain-con 96.9 0.0031 1E-07 63.6 9.6 92 458-549 311-423 (433)
219 3qwp_A SET and MYND domain-con 96.8 0.0062 2.1E-07 61.4 10.7 98 453-550 295-413 (429)
220 3ly7_A Transcriptional activat 96.7 0.017 5.8E-07 55.8 12.7 133 441-577 190-340 (372)
221 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0089 3E-07 46.6 7.9 71 483-553 7-86 (104)
222 3lvg_A Clathrin heavy chain 1; 96.5 0.00045 1.6E-08 67.9 -0.0 237 169-431 54-325 (624)
223 3u64_A Protein TP_0956; tetrat 96.4 0.011 3.7E-07 54.6 8.8 86 497-582 179-275 (301)
224 3bee_A Putative YFRE protein; 96.3 0.023 7.9E-07 43.0 8.7 69 478-546 3-76 (93)
225 3mkq_A Coatomer beta'-subunit; 96.2 0.12 4E-06 57.3 17.7 155 107-296 607-762 (814)
226 3mkq_A Coatomer beta'-subunit; 96.1 0.6 2.1E-05 51.6 22.9 103 387-507 660-762 (814)
227 1pc2_A Mitochondria fission pr 96.1 0.029 1E-06 46.4 8.8 85 462-548 15-106 (152)
228 1nzn_A CGI-135 protein, fissio 96.1 0.024 8.1E-07 45.1 7.8 89 457-547 13-108 (126)
229 1y8m_A FIS1; mitochondria, unk 95.6 0.32 1.1E-05 39.3 12.7 91 510-626 36-130 (144)
230 3mkq_B Coatomer subunit alpha; 95.4 1.1 3.7E-05 38.1 16.2 104 387-508 13-116 (177)
231 3mkq_B Coatomer subunit alpha; 95.0 0.87 3E-05 38.6 14.3 102 178-296 14-115 (177)
232 2v5f_A Prolyl 4-hydroxylase su 95.0 0.094 3.2E-06 40.6 8.0 65 512-576 4-75 (104)
233 1qsa_A Protein (soluble lytic 95.0 4.3 0.00015 42.6 24.0 114 424-541 228-347 (618)
234 4gns_B Protein CSD3, chitin bi 94.9 0.1 3.5E-06 55.8 10.3 54 520-573 344-397 (754)
235 3u64_A Protein TP_0956; tetrat 94.9 0.23 7.9E-06 45.9 11.1 105 461-574 179-296 (301)
236 1nzn_A CGI-135 protein, fissio 94.8 0.43 1.5E-05 37.9 11.1 84 423-509 14-102 (126)
237 3o48_A Mitochondria fission 1 93.9 0.3 1E-05 38.9 8.4 65 511-575 38-106 (134)
238 4b4t_P 26S proteasome regulato 93.7 2.9 9.9E-05 42.1 17.5 251 46-299 30-324 (445)
239 4h7y_A Dual specificity protei 93.6 0.32 1.1E-05 39.6 8.1 55 494-548 73-129 (161)
240 2wpv_A GET4, UPF0363 protein Y 92.3 7.5 0.00026 36.6 22.4 170 273-474 36-217 (312)
241 3lpz_A GET4 (YOR164C homolog); 92.3 7.8 0.00027 36.7 23.0 169 273-473 38-215 (336)
242 4ady_A RPN2, 26S proteasome re 92.3 16 0.00054 40.1 28.6 264 245-523 384-671 (963)
243 3lpz_A GET4 (YOR164C homolog); 91.3 10 0.00034 36.0 21.9 166 70-262 38-214 (336)
244 4h7y_A Dual specificity protei 90.8 0.85 2.9E-05 37.2 7.4 56 525-580 72-127 (161)
245 1wy6_A Hypothetical protein ST 90.5 5.6 0.00019 31.7 14.0 84 182-267 74-157 (172)
246 3ffl_A Anaphase-promoting comp 90.2 2.3 7.9E-05 35.4 9.7 29 481-509 122-150 (167)
247 2ff4_A Probable regulatory pro 90.1 0.67 2.3E-05 45.8 7.8 68 516-583 174-246 (388)
248 1wdy_A 2-5A-dependent ribonucl 89.9 4.2 0.00014 37.6 13.2 51 37-91 7-60 (285)
249 4gns_B Protein CSD3, chitin bi 88.4 15 0.00052 39.3 17.0 55 141-196 344-398 (754)
250 4ady_A RPN2, 26S proteasome re 87.9 36 0.0012 37.4 30.3 250 280-541 384-657 (963)
251 1v54_E Cytochrome C oxidase po 87.2 2.8 9.4E-05 31.4 7.2 63 425-489 25-87 (109)
252 3ffl_A Anaphase-promoting comp 85.8 2.5 8.4E-05 35.2 7.2 120 440-573 13-148 (167)
253 1wdy_A 2-5A-dependent ribonucl 85.7 17 0.00057 33.4 14.5 208 71-294 6-240 (285)
254 2ff4_A Probable regulatory pro 84.9 6.8 0.00023 38.5 11.5 72 413-485 174-249 (388)
255 1v54_E Cytochrome C oxidase po 84.7 9.3 0.00032 28.6 8.9 63 114-177 25-87 (109)
256 2wpv_A GET4, UPF0363 protein Y 84.4 27 0.00093 32.7 21.7 167 172-364 36-216 (312)
257 1k1a_A B-cell lymphoma 3-encod 82.5 21 0.00073 31.7 13.3 150 38-194 12-172 (241)
258 2p58_C Putative type III secre 82.3 13 0.00045 27.6 9.2 86 250-340 22-107 (116)
259 3kea_A K1L; tropism, ANK repea 81.9 20 0.00069 33.1 13.1 142 74-224 35-182 (285)
260 2uwj_G Type III export protein 81.0 13 0.00043 27.7 8.3 86 250-340 21-106 (115)
261 2y69_E Cytochrome C oxidase su 81.0 6.2 0.00021 31.3 7.2 63 425-489 68-130 (152)
262 3o48_A Mitochondria fission 1 80.9 13 0.00044 29.6 9.2 70 479-548 38-113 (134)
263 3eu9_A Huntingtin-interacting 80.1 7.9 0.00027 34.5 9.4 47 41-91 15-63 (240)
264 4fhn_B Nucleoporin NUP120; pro 79.5 41 0.0014 38.6 16.8 167 273-463 815-989 (1139)
265 1y8m_A FIS1; mitochondria, unk 79.4 22 0.00074 28.7 10.1 69 479-547 37-111 (144)
266 2y69_E Cytochrome C oxidase su 77.3 19 0.00065 28.6 8.9 61 116-177 70-130 (152)
267 1zbp_A Hypothetical protein VP 77.1 28 0.00095 31.7 11.4 119 419-548 6-135 (273)
268 2qx5_A Nucleoporin NIC96; mRNA 76.7 79 0.0027 33.3 19.1 81 306-406 299-383 (661)
269 2uwj_G Type III export protein 76.7 21 0.00071 26.6 9.1 86 352-450 22-107 (115)
270 3esl_A Checkpoint serine/threo 76.5 24 0.00081 30.5 10.3 102 498-625 61-168 (202)
271 3txn_A 26S proteasome regulato 76.3 60 0.002 31.7 15.1 161 380-541 20-209 (394)
272 2p58_C Putative type III secre 76.1 22 0.00075 26.5 9.2 85 352-449 23-107 (116)
273 3kea_A K1L; tropism, ANK repea 75.8 9.4 0.00032 35.5 8.7 182 38-237 34-225 (285)
274 3eu9_A Huntingtin-interacting 73.8 31 0.001 30.4 11.5 111 75-194 14-131 (240)
275 4fhn_B Nucleoporin NUP120; pro 73.6 24 0.00081 40.5 12.7 52 416-472 818-869 (1139)
276 1qsa_A Protein (soluble lytic 72.5 98 0.0033 32.4 32.9 240 315-580 228-483 (618)
277 1n11_A Ankyrin; clathrin, BAND 69.9 66 0.0023 31.7 14.0 144 38-195 17-169 (437)
278 1zbp_A Hypothetical protein VP 69.2 8.2 0.00028 35.1 6.0 58 489-546 5-64 (273)
279 4g8k_A 2-5A-dependent ribonucl 68.8 76 0.0026 29.9 13.6 56 36-96 26-84 (337)
280 3ljn_A Hypothetical protein; a 68.3 17 0.00058 35.1 8.9 90 36-130 21-112 (364)
281 3hra_A Ankyrin repeat family p 67.1 50 0.0017 28.1 11.0 150 77-234 12-172 (201)
282 1k1a_A B-cell lymphoma 3-encod 67.0 56 0.0019 28.7 11.7 83 109-195 16-102 (241)
283 3ltm_A Alpha-REP4; protein eng 66.8 62 0.0021 27.9 20.1 78 379-460 95-172 (211)
284 4a1g_A Mitotic checkpoint seri 65.0 45 0.0015 27.3 9.0 49 532-580 84-134 (152)
285 3b7b_A Euchromatic histone-lys 64.5 33 0.0011 30.3 9.5 143 38-195 14-167 (237)
286 4b4t_R RPN7, 26S proteasome re 63.1 18 0.0006 36.1 7.8 59 448-506 134-193 (429)
287 2wvi_A Mitotic checkpoint seri 61.7 64 0.0022 26.8 9.6 49 532-580 79-129 (164)
288 3bqo_A Telomeric repeat-bindin 59.7 43 0.0015 28.6 8.1 68 497-564 94-168 (211)
289 1n11_A Ankyrin; clathrin, BAND 58.6 1.4E+02 0.0049 29.2 16.0 205 73-295 17-234 (437)
290 4b4t_P 26S proteasome regulato 58.4 1.5E+02 0.0051 29.5 24.0 96 413-508 140-245 (445)
291 3jxi_A Vanilloid receptor-rela 55.9 28 0.00097 31.4 7.5 54 38-91 8-70 (260)
292 4b4t_R RPN7, 26S proteasome re 54.6 85 0.0029 31.1 11.1 60 202-261 133-194 (429)
293 3jxi_A Vanilloid receptor-rela 54.2 36 0.0012 30.6 7.9 24 110-133 13-36 (260)
294 3ltj_A Alpharep-4; protein eng 53.3 1E+02 0.0036 26.1 19.9 147 174-329 33-179 (201)
295 2y1l_E Darpin-8.4; hydrolase-i 53.1 84 0.0029 25.7 9.5 119 35-167 14-139 (169)
296 3ltj_A Alpharep-4; protein eng 53.0 1.1E+02 0.0036 26.1 20.5 30 443-473 150-179 (201)
297 4g8k_A 2-5A-dependent ribonucl 52.1 1.5E+02 0.0052 27.7 12.5 272 71-370 26-328 (337)
298 2nsz_A Programmed cell death p 51.6 56 0.0019 25.8 7.4 66 273-338 10-80 (129)
299 1bd8_A P19INK4D CDK4/6 inhibit 51.5 56 0.0019 26.3 8.0 15 180-194 109-123 (156)
300 3esl_A Checkpoint serine/threo 50.1 1.2E+02 0.0043 26.0 9.8 56 213-268 92-148 (202)
301 3ltm_A Alpha-REP4; protein eng 49.8 1.2E+02 0.0042 25.9 20.2 160 277-456 40-199 (211)
302 3b7b_A Euchromatic histone-lys 49.5 91 0.0031 27.2 9.8 175 39-228 48-235 (237)
303 3ljn_A Hypothetical protein; a 47.0 90 0.0031 29.8 9.9 19 277-295 177-195 (364)
304 3d9h_A CDNA FLJ77766, highly s 46.9 51 0.0017 30.3 7.7 59 33-91 13-80 (285)
305 3aji_A 26S proteasome non-ATPa 46.7 1.4E+02 0.0047 25.9 10.4 17 75-91 45-61 (231)
306 3hra_A Ankyrin repeat family p 45.4 1.2E+02 0.004 25.6 9.5 149 109-270 12-173 (201)
307 2r9g_A AAA ATPase, central reg 44.4 1.5E+02 0.0052 25.4 9.6 45 306-351 16-63 (204)
308 2rfa_A Transient receptor pote 43.6 1.3E+02 0.0044 26.1 9.8 45 140-188 124-170 (232)
309 2nsz_A Programmed cell death p 43.6 80 0.0027 24.9 7.2 67 380-446 8-79 (129)
310 2ion_A PDCD4, programmed cell 43.2 51 0.0017 27.0 6.1 66 273-338 12-82 (152)
311 2d2s_A Exocyst complex compone 42.1 73 0.0025 28.4 7.4 22 207-228 25-46 (235)
312 4aez_C MAD3, mitotic spindle c 41.4 1E+02 0.0035 27.1 7.9 51 530-580 131-183 (223)
313 3utm_A Tankyrase-1; tankyrase, 39.4 2.4E+02 0.0081 26.2 15.0 118 38-168 27-151 (351)
314 2d2s_A Exocyst complex compone 39.3 1.2E+02 0.0042 26.9 8.5 22 106-127 25-46 (235)
315 2zu6_B Programmed cell death p 39.1 2.4E+02 0.0083 26.2 14.7 80 413-494 169-250 (307)
316 3aji_A 26S proteasome non-ATPa 38.0 2E+02 0.0067 24.8 10.6 18 74-91 10-27 (231)
317 3d9h_A CDNA FLJ77766, highly s 37.9 2.3E+02 0.0079 25.7 11.9 143 38-194 62-212 (285)
318 3eiq_C Programmed cell death p 36.6 2.9E+02 0.0099 26.4 13.7 71 273-343 220-295 (358)
319 4gq2_M Nucleoporin NUP120; bet 36.2 2.8E+02 0.0096 30.8 12.6 90 451-546 816-931 (950)
320 3qye_A TBC1 domain family memb 35.2 2.6E+02 0.0089 26.2 10.8 129 114-249 164-308 (331)
321 2ion_A PDCD4, programmed cell 35.1 74 0.0025 26.0 5.8 67 380-446 10-81 (152)
322 3bge_A Predicted ATPase; struc 34.8 2.2E+02 0.0074 24.4 8.9 46 306-351 9-57 (201)
323 1ya0_A SMG-7 transcript varian 34.8 1E+02 0.0035 31.2 8.0 55 518-572 157-211 (497)
324 1bd8_A P19INK4D CDK4/6 inhibit 34.8 1.2E+02 0.004 24.3 7.4 11 146-156 11-21 (156)
325 2xai_A ASB-9, ankyrin repeat a 32.8 2.6E+02 0.009 24.8 11.0 49 39-91 7-57 (261)
326 3twr_A Tankyrase-2; ankyrin re 32.7 1.9E+02 0.0066 23.2 9.9 16 76-91 14-29 (165)
327 2rfa_A Transient receptor pote 32.6 2.4E+02 0.0082 24.3 12.0 17 75-91 8-24 (232)
328 3txn_A 26S proteasome regulato 32.5 3.5E+02 0.012 26.2 26.6 89 477-578 252-345 (394)
329 3twr_A Tankyrase-2; ankyrin re 31.6 1.3E+02 0.0046 24.2 7.3 120 36-168 9-135 (165)
330 4b4t_S RPN3, 26S proteasome re 30.8 1.3E+02 0.0045 30.4 7.8 61 446-508 232-297 (523)
331 2etb_A Transient receptor pote 30.3 41 0.0014 30.2 4.1 29 38-66 5-33 (256)
332 3bu8_A Telomeric repeat-bindin 29.1 41 0.0014 29.1 3.3 48 461-508 88-141 (235)
333 3ctd_A Putative ATPase, AAA fa 29.1 2.8E+02 0.0096 24.0 9.5 48 304-351 35-85 (213)
334 4b4t_S RPN3, 26S proteasome re 29.0 1.4E+02 0.0047 30.3 7.6 65 482-546 232-303 (523)
335 4a1g_A Mitotic checkpoint seri 28.8 2.4E+02 0.0081 23.0 9.2 52 217-268 82-134 (152)
336 2r9g_A AAA ATPase, central reg 28.5 2.6E+02 0.009 24.0 8.1 61 206-267 17-85 (204)
337 2fe3_A Peroxide operon regulat 27.8 1.6E+02 0.0056 23.6 6.8 48 202-249 23-70 (145)
338 2f8y_A Notch homolog 1, transl 27.1 2.9E+02 0.0099 23.5 11.2 50 38-91 28-79 (223)
339 2jab_A H10-2-G3; HER2, darpin, 27.1 2E+02 0.0068 22.2 7.3 128 22-158 1-134 (136)
340 2etb_A Transient receptor pote 25.2 2.2E+02 0.0074 25.1 8.1 22 110-131 10-31 (256)
341 2fe3_A Peroxide operon regulat 24.7 2.3E+02 0.0079 22.6 7.2 49 302-350 22-70 (145)
342 2pk8_A Uncharacterized protein 24.1 66 0.0022 23.4 3.0 31 604-634 13-43 (103)
343 3ygs_P Procaspase 9; apoptosis 23.8 1.1E+02 0.0039 22.5 4.7 37 284-320 51-87 (97)
344 3bu8_A Telomeric repeat-bindin 23.8 3.6E+02 0.012 23.4 8.1 48 426-473 88-142 (235)
345 2pnn_A Transient receptor pote 23.1 2.5E+02 0.0086 25.0 8.1 19 111-129 22-40 (273)
346 2wvi_A Mitotic checkpoint seri 22.9 3.2E+02 0.011 22.5 9.8 54 217-270 77-131 (164)
347 1oyz_A Hypothetical protein YI 22.7 4.1E+02 0.014 23.7 23.8 60 479-542 204-263 (280)
348 2xig_A Ferric uptake regulatio 22.7 2.3E+02 0.0077 22.9 6.8 47 203-249 29-75 (150)
349 3l6a_A Eukaryotic translation 22.4 2.4E+02 0.0081 27.1 7.8 138 383-521 16-162 (364)
350 2zu6_B Programmed cell death p 22.2 2.4E+02 0.0083 26.2 7.6 67 273-339 169-240 (307)
351 2f8y_A Notch homolog 1, transl 21.2 3.8E+02 0.013 22.7 11.1 111 73-194 28-147 (223)
352 2fu4_A Ferric uptake regulatio 20.9 1.9E+02 0.0067 20.1 5.4 59 125-184 8-67 (83)
353 3i5p_A Nucleoporin NUP170; hel 20.8 6.7E+02 0.023 25.4 11.4 68 510-577 175-247 (525)
354 3t8k_A Uncharacterized protein 20.6 2.5E+02 0.0086 23.5 7.0 91 78-169 14-109 (186)
355 1g6u_A Domain swapped dimer; d 20.4 1.4E+02 0.0048 17.4 3.6 36 615-652 7-43 (48)
356 2dzn_A Probable 26S proteasome 20.1 2.3E+02 0.008 24.2 7.1 19 73-91 39-57 (228)
357 4ets_A Ferric uptake regulatio 20.1 1.9E+02 0.0065 23.8 5.8 24 206-229 38-61 (162)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-42 Score=373.09 Aligned_cols=481 Identities=10% Similarity=-0.034 Sum_probs=400.1
Q ss_pred HhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHH
Q 048281 76 MYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKK 155 (660)
Q Consensus 76 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 155 (660)
.+.+.|.+..+...++ .++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..
T Consensus 62 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQN-TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccc-cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3556778888888888 77778999999999999999999999999999985 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC-------------------CchhHHHHHHHHHhCCCh
Q 048281 156 IHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR-------------------DVVLWNAMVNGYAQIGEF 216 (660)
Q Consensus 156 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~ 216 (660)
+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988643 678899999999999999999999999965433 378999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchhH--HHH-HHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHH
Q 048281 217 HKALEVFRRMSKEGIWMSR-FTVTGVLSALIMMGFFKNG--RVV-HGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEI 292 (660)
Q Consensus 217 ~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~ 292 (660)
++|+++|++|.+.+ |+. ..+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999998854 443 3444444333322221111 111 33444444445566777888999999999999999
Q ss_pred HHhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCC
Q 048281 293 FEMMEE--KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKN 370 (660)
Q Consensus 293 ~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 370 (660)
|+++.+ ++..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.....
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK- 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc-
Confidence 999988 789999999999999999999999999999875 3367789999999999999999999999998765433
Q ss_pred CCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 048281 371 GSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVT 447 (660)
Q Consensus 371 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 447 (660)
..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+
T Consensus 373 --------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 373 --------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred --------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 8899999999999999999999999875 3578899999999999999999999999999864 457889
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCC--HHHHHH
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMP-------NEAN--PVVWRT 518 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~ 518 (660)
|..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++. ..|+ ..+|..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 999999999999999999999999873 44578899999999999999999999999873 2466 789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
++.+|.+.|++++|+..++++++.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-39 Score=347.19 Aligned_cols=479 Identities=9% Similarity=-0.034 Sum_probs=368.6
Q ss_pred CChhHHHHHHHHhHcCCChhHHHHHHccCC-CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 048281 65 DSPLSITSLINMYSKCCQMKYALFVFNNLS-CEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKC 143 (660)
Q Consensus 65 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 143 (660)
+++..|+.++..|.+.|++++|..+|++.. ..|+..+|+.++.+|.+.|++++|..+|+++... .++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 456667777777777777777777776321 2355566667777777777777777777766432 4566677777777
Q ss_pred HhhhCCHHHHHHHHHHHHHh---------------CCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCC---CchhHHH
Q 048281 144 CCDVMAVLEVKKIHGLVFKL---------------GLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLR---DVVLWNA 205 (660)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 205 (660)
+.+.|++++|.++++++... |.+++..+|+.++.+|.+.|++++|..+|+++.+. +...|..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 77777777777777642211 22345777888888888888888888888777532 3344444
Q ss_pred HHHHHHhCCChhHHHH--H-HHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 048281 206 MVNGYAQIGEFHKALE--V-FRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGK 282 (660)
Q Consensus 206 li~~~~~~~~~~~A~~--~-~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (660)
+...+...+..+.+.. + +..+...+..+...+|..++..|.+.|++++|.++++.+.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 4443333322222111 1 444444444455556667777788888888888888877665 4778888888888888
Q ss_pred CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 048281 283 GKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIH 359 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 359 (660)
.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..+...+.+.|++++|.+++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8888888888888753 366788889999999999999999999888653 446778888888899999999999999
Q ss_pred HHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048281 360 GYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCM 436 (660)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 436 (660)
+.+.+..... ..+|+.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++
T Consensus 397 ~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 397 SKSSTMDPQF---------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHCTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9888765433 7789999999999999999999999875 347789999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--
Q 048281 437 CEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRY---GVVPT--IEHYTCVIDMLGRAGQLNEAYELALAMPN-- 509 (660)
Q Consensus 437 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 509 (660)
.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++..
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 4578899999999999999999999999998732 56777 78999999999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 510 EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
+.+..+|..++.+|...|++++|.+.++++++++|+++..+..++.+|.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999988774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.6e-26 Score=232.82 Aligned_cols=372 Identities=11% Similarity=0.062 Sum_probs=274.8
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC---CCCchhHHHHHHHHHhCCCh
Q 048281 140 LIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP---LRDVVLWNAMVNGYAQIGEF 216 (660)
Q Consensus 140 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 216 (660)
+...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... ..+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455677888888888888887764 2244566667777788888888888876654 23566788888888888888
Q ss_pred hHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHh
Q 048281 217 HKALEVFRRMSKEGIWMS-RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEM 295 (660)
Q Consensus 217 ~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 295 (660)
++|++.|+++.+. .|+ ..+|..+..++...|++++|...+..+.+.. +.+...+..+...|...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887763 343 3456667777777777777777776666553 22333444555555555555555555555
Q ss_pred cCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCC
Q 048281 296 MEE--K-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGS 372 (660)
Q Consensus 296 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 372 (660)
+.+ | +..+|+.+...+...|++++|...|+ .+...++..
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------------------------------~al~~~p~~--- 202 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE-----------------------------------KAVTLDPNF--- 202 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH-----------------------------------HHHHHCTTC---
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------HHHhcCCCc---
Confidence 432 1 23444444444545555555554444 444433322
Q ss_pred CCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 048281 373 CKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFV 449 (660)
Q Consensus 373 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 449 (660)
...+..+...+...|++++|...|++.. ..+..+|..+..+|...|++++|+..|+++.+.+ +.+..++.
T Consensus 203 ------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 275 (388)
T 1w3b_A 203 ------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYC 275 (388)
T ss_dssp ------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 5566777777888888888888887654 3357788899999999999999999999999863 33567888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 048281 450 GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHG 527 (660)
Q Consensus 450 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 527 (660)
.+..++.+.|++++|.+.++.+.+ ..+.+..++..+..++.+.|++++|.+.++++.. +.+..++..++.++.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 899999999999999999999987 3566788999999999999999999999998765 456789999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 528 NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
++++|+..+++++++.|+++..|..++.++...|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.5e-25 Score=228.91 Aligned_cols=353 Identities=12% Similarity=0.055 Sum_probs=298.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCC
Q 048281 207 VNGYAQIGEFHKALEVFRRMSKEGIWMS-RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKC 285 (660)
Q Consensus 207 i~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 285 (660)
...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+....+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34566778888888888777664 244 3455556666777788888888887777654 4567788889999999999
Q ss_pred HHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH-HHHHHHHHHHhcccchHHHHHHHHH
Q 048281 286 VGEALEIFEMMEE--K-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL-VTFSTVLPACSHLAALMHGRQIHGY 361 (660)
Q Consensus 286 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 361 (660)
+++|+..|+++.+ | +..+|..+...+.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999988754 3 4567899999999999999999999999876 4554 4556666778888999999999999
Q ss_pred HHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048281 362 IVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCE 438 (660)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 438 (660)
+....+.. ..++..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..+++...
T Consensus 161 al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 161 AIETQPNF---------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHCTTC---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98876544 7889999999999999999999999876 34677899999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHH
Q 048281 439 AKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVW 516 (660)
Q Consensus 439 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 516 (660)
.. +.+..++..+..++...|++++|...++.+.+ ..+.+..+|..+..+|.+.|++++|.+.++++.. +.+..+|
T Consensus 232 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 308 (388)
T 1w3b_A 232 LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 53 33567888899999999999999999999987 3344578899999999999999999999998754 5678899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999863
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=6.3e-28 Score=250.59 Aligned_cols=212 Identities=12% Similarity=0.087 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHCCCCCCc-ccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccC
Q 048281 117 KGLDFFNHMRQLGVLPDK-YTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEEL 195 (660)
Q Consensus 117 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 195 (660)
.+..+.+++.+.++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 455666777777766554 358889999999999999999999999999999999999999999887764332
Q ss_pred CCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHH
Q 048281 196 PLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNA 275 (660)
Q Consensus 196 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 275 (660)
.+.+.++.|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12455688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccc
Q 048281 276 LIDMYGKGKCVGEALEIFEMMEE----KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLA 350 (660)
Q Consensus 276 li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 350 (660)
+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..++..+
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999964 7999999999999999999999999999999999999999999999887643
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.5e-27 Score=246.08 Aligned_cols=182 Identities=10% Similarity=0.078 Sum_probs=138.5
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCC---------HHHHHHHHHHHHHhCCCCChhH
Q 048281 101 TYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMA---------VLEVKKIHGLVFKLGLDLDVYI 171 (660)
Q Consensus 101 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 171 (660)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566667777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHhHhcCChHHHHHHHccCC----CCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 048281 172 GSALVNTYLKCQFMEEALKVFEELP----LRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIM 247 (660)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 247 (660)
|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 7777777777777777777776664 357777777777788888888888888888888888888888888888888
Q ss_pred cCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 048281 248 MGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGK 282 (660)
Q Consensus 248 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 282 (660)
.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888877765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-23 Score=221.17 Aligned_cols=437 Identities=9% Similarity=-0.054 Sum_probs=239.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHh
Q 048281 102 YNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLK 181 (660)
Q Consensus 102 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 181 (660)
|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|++++|...++.+++.+ +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666643 566666666666666666666666666666654 2244556666666666
Q ss_pred cCChHHHHHHHccCCC---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHH
Q 048281 182 CQFMEEALKVFEELPL---RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVH 258 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 258 (660)
.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 6666666666655432 1223333333333332222222222222222111111111111000000001111111111
Q ss_pred HHHHHhCC---------CCCchHHHHHHHHHHc---CCCHHHHHHHHHhcCC----------------C-ChhhHHHHHH
Q 048281 259 GIVVKMGY---------DSGVPVMNALIDMYGK---GKCVGEALEIFEMMEE----------------K-DIFSWNSIMT 309 (660)
Q Consensus 259 ~~~~~~g~---------~~~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 309 (660)
..+..... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11100000 1112333333333333 6677777777666543 1 2345666777
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH
Q 048281 310 VHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY 389 (660)
Q Consensus 310 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 389 (660)
.+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+....... ..++..+...|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~ 314 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---------SSVYYHRGQMN 314 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC---------THHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC---------HHHHHHHHHHH
Confidence 7777777777777777777653 335566666666777777777777777666554332 55666677777
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048281 390 TKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
...|++++|...|+++. ..+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77777777777776653 2345566667777777777777777777776642 2344566666667777777777777
Q ss_pred HHHHhHHhcCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048281 467 FLPLMESRYGVVPT----IEHYTCVIDMLGR---AGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQ 537 (660)
Q Consensus 467 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (660)
.++.+.+...-.++ ...+..+..+|.. .|++++|...++++.. +.+..+|..+...+...|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77776653222222 3366667777777 7777777777766432 3455666677777777777777777777
Q ss_pred HHHhcCCCCcchHHHH
Q 048281 538 RVFQLEPGHCGNYVLM 553 (660)
Q Consensus 538 ~~~~~~p~~~~~~~~l 553 (660)
+++++.|+++..+..+
T Consensus 474 ~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 474 ESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHhccccHHHHHHH
Confidence 7777777665554443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.9e-22 Score=214.26 Aligned_cols=427 Identities=8% Similarity=-0.064 Sum_probs=320.9
Q ss_pred ccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC---CCCchhHHHHHHHHH
Q 048281 135 YTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP---LRDVVLWNAMVNGYA 211 (660)
Q Consensus 135 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 211 (660)
..+......+.+.|++++|...|+.+++.. |+...+..+..+|.+.|++++|...|+++. ..+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 346667788899999999999999999976 688999999999999999999999999875 236678999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHH---HHHHHcCCCHHH
Q 048281 212 QIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNAL---IDMYGKGKCVGE 288 (660)
Q Consensus 212 ~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~~~~~~ 288 (660)
+.|++++|++.|+++...+. ++......++..+........+.+.+..+...+..|+......- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 44444444554444333333333222222211111111100000 001111111222
Q ss_pred HHHHHHhcCC---------C-ChhhHHHHHHHHHH---cCChHHHHHHHHHHhh-----cCCCC--------CHHHHHHH
Q 048281 289 ALEIFEMMEE---------K-DIFSWNSIMTVHEQ---CGNHDGTLRLFDRMLS-----AGFQP--------DLVTFSTV 342 (660)
Q Consensus 289 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~p--------~~~t~~~l 342 (660)
+...+..... + +...+......+.. .|++++|+..|+++.+ ..-.| +...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2222222211 1 23445555555554 8999999999999987 32122 23567777
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHH
Q 048281 343 LPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILG 419 (660)
Q Consensus 343 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 419 (660)
...+...|+++.|...++.+...... ..++..+...|...|++++|...|+++.. .+...|..+...
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR----------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc----------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence 78889999999999999999877532 56788899999999999999999998753 467789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE 499 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 499 (660)
|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999864 335678888889999999999999999999873 34467889999999999999999
Q ss_pred HHHHHHhCCC----CCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 500 AYELALAMPN----EAN----PVVWRTLLAASRL---HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 500 A~~~~~~~~~----~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
|...++++.. .++ ...|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999988643 122 3489999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 048281 569 IRHTMRQQN 577 (660)
Q Consensus 569 ~~~~~~~~~ 577 (660)
.+++..+..
T Consensus 471 ~~~~a~~~~ 479 (514)
T 2gw1_A 471 LFEESADLA 479 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999998743
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.7e-21 Score=201.68 Aligned_cols=336 Identities=11% Similarity=0.023 Sum_probs=231.7
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHH
Q 048281 199 DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALID 278 (660)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 278 (660)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|+++.|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455666666666666666666666665531 2234455555555555555555555555555543 223445555666
Q ss_pred HHHcCCCHHHHHHHHHhcCCCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccch
Q 048281 279 MYGKGKCVGEALEIFEMMEEKD---I---FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAAL 352 (660)
Q Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 352 (660)
+|.+.|++++|...|+++.+.+ . ..|..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 6666666666666666554321 1 3333333221110 111122234555666
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHH
Q 048281 353 MHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEA 429 (660)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 429 (660)
+.|...++.+....... ..++..++.+|.+.|++++|.+.|+++. ..+..+|..++.+|...|++++|
T Consensus 160 ~~A~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWD---------AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666554332 6777888888888888888888888775 35678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHH
Q 048281 430 LDMFSCMCEAKLKPDE-VTFVGV------------LSACSHSGFLSQGREFLPLMESRYGVVPT-----IEHYTCVIDML 491 (660)
Q Consensus 430 ~~~~~~m~~~g~~p~~-~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 491 (660)
+..|+++... .|+. ..+..+ ...|...|++++|...|+.+.+. .|+ ...+..++.++
T Consensus 231 ~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHH
Confidence 9999999875 4443 334333 67899999999999999999873 233 45788999999
Q ss_pred hhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHH------------H
Q 048281 492 GRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI------------Y 557 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~ 557 (660)
.+.|++++|...++++.. +.+..+|..++.+|...|++++|...+++++++.|+++..+..++.+ |
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 999999999999998653 45788999999999999999999999999999999999999988844 4
Q ss_pred HhCC-----ChHHHHHHHHHH
Q 048281 558 VAGG-----KYEEVLDIRHTM 573 (660)
Q Consensus 558 ~~~g-----~~~~a~~~~~~~ 573 (660)
...| +.+++.+.++++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHHH
T ss_pred HHhCCCccCCHHHHHHHHHHH
Confidence 4455 556777777763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.5e-21 Score=208.63 Aligned_cols=419 Identities=9% Similarity=0.023 Sum_probs=231.9
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 048281 99 VFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNT 178 (660)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 178 (660)
...|..+...+.+.|++++|+..|+++.+... .+...|..+..++...|++++|.+.++.+++.. +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34567778888899999999999999887642 267788888888999999999999999998875 3356778888888
Q ss_pred hHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCC------CCCChhhHHHHHHHHHccCCch
Q 048281 179 YLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEG------IWMSRFTVTGVLSALIMMGFFK 252 (660)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~~~~~ 252 (660)
|...|++++|...|+.+. .+....+..+..+...+....|+..++++.... ..|+..... .+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChH
Confidence 899999999999886442 223333334455555666678888888875431 122222222 122222222
Q ss_pred hHHHHHHHHHHhCCCCCch---HHHHHHHHHHcC--------CCHHHHHHHHHhcCCCC----------hhhHHHHHHHH
Q 048281 253 NGRVVHGIVVKMGYDSGVP---VMNALIDMYGKG--------KCVGEALEIFEMMEEKD----------IFSWNSIMTVH 311 (660)
Q Consensus 253 ~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~--------~~~~~A~~~~~~~~~~~----------~~~~~~li~~~ 311 (660)
.+...+.. ....+.. ....+...+... |++++|..+|+++.+.+ ..+|..+...+
T Consensus 178 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 21111100 0011111 222222222221 23444444444443311 11233333444
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh
Q 048281 312 EQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK 391 (660)
Q Consensus 312 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 391 (660)
...|++++|...|++..+. .|+.. .+..+...|..
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~-------------------------------------------~~~~l~~~~~~ 288 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPN-------------------------------------------SYIFLALTLAD 288 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHH-------------------------------------------HHHHHHHHTCC
T ss_pred HhcccHHHHHHHHHHHHhc--CCCch-------------------------------------------HHHHHHHHHHH
Confidence 4444444444444444443 23333 44444555555
Q ss_pred cCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048281 392 CGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFL 468 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 468 (660)
.|++++|...|+++. ..+..+|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|..++
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555443 2244555556666666666666666666665542 223445555556666666666666666
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----C----CCHHHHHHHHHHHHHc----------CChH
Q 048281 469 PLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN----E----ANPVVWRTLLAASRLH----------GNTD 530 (660)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~----------g~~~ 530 (660)
+.+.+. .+.+...+..+...|...|++++|...++++.. . .....+..+..++... |+++
T Consensus 368 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 368 NETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 666552 233445566666666666666666666655422 0 1112233444555555 6777
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 531 LAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 446 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777777777776666777777777777777777777766553
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-20 Score=196.61 Aligned_cols=306 Identities=11% Similarity=0.020 Sum_probs=241.0
Q ss_pred ChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 048281 234 SRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTV 310 (660)
Q Consensus 234 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~ 310 (660)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44566777777777788888888877777653 34566777777777777777777777777654 245677777777
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH
Q 048281 311 HEQCGNHDGTLRLFDRMLSAGFQPDL----VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM 386 (660)
Q Consensus 311 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 386 (660)
|.+.|++++|...|+++.+. .|+. ..+..+...+. ...+..+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------------------~~~~~~~a 150 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-------------------------------MQRLRSQA 150 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------------------HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-------------------------------HHHHHHHH
Confidence 77777777777777777764 3443 23333322211 22334456
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 048281 387 DMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQ 463 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 463 (660)
..|.+.|++++|...|+++. ..+...+..++.+|.+.|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 67889999999999999876 3477899999999999999999999999999863 4567889999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHH------------HHHHhhcCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHH
Q 048281 464 GREFLPLMESRYGVVPTIEHYTCV------------IDMLGRAGQLNEAYELALAMPN-EAN-----PVVWRTLLAASRL 525 (660)
Q Consensus 464 a~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l~~~~~~ 525 (660)
|...++.+.+. .+.+...+..+ +..+.+.|++++|...|+++.. .|+ ...|..+..++.+
T Consensus 230 A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 99999999863 33344455444 8899999999999999998754 333 3478889999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 526 HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.|++++|+..++++++..|+++..+..++.+|...|++++|...++++.+.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.5e-19 Score=193.15 Aligned_cols=439 Identities=9% Similarity=-0.039 Sum_probs=287.4
Q ss_pred chhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccC--CCCCCcccHHHHHHH
Q 048281 31 TLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNL--SCEPNVFTYNAMISG 108 (660)
Q Consensus 31 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~li~~ 108 (660)
....+..+...+.+.|++++|...++.+++... .++..+..+..+|.+.|++++|++.|++. ..+.+...|..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 356677788888899999999999999888763 46788888888999999999999998852 244567788888889
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHhHhcCChH
Q 048281 109 FYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGL--DLDVYIGSALVNTYLKCQFME 186 (660)
Q Consensus 109 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~ 186 (660)
+...|++++|+..|+.+. . .|+.. ...+..+...+....|...++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-L--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-c--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999986432 2 22221 2223444555666778888887755311 111122234455566677777
Q ss_pred HHHHHHccCCCCCch---hHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCchhH
Q 048281 187 EALKVFEELPLRDVV---LWNAMVNGYAQI--------GEFHKALEVFRRMSKEGIWMSR-FTVTGVLSALIMMGFFKNG 254 (660)
Q Consensus 187 ~A~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a 254 (660)
.+...+......+.. .+..+...+... |++++|+++++++.+.. |+. ..+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~------------- 242 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENA------------- 242 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH-------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHH-------------
Confidence 777777666654433 333333332222 35666777776665432 221 111111
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 048281 255 RVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE--KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGF 332 (660)
Q Consensus 255 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 332 (660)
..++..+...+...|++++|...|+...+ |+...|..+...+...|++++|+..|+++.+..
T Consensus 243 ---------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 243 ---------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred ---------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 12345566777888889999988888754 556778888888999999999999999887653
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 048281 333 QPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKD 409 (660)
Q Consensus 333 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~ 409 (660)
+.+..++ ..+...|...|++++|...|+++. ..+
T Consensus 307 ~~~~~~~-------------------------------------------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 307 PEYPPTY-------------------------------------------YHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp TTCHHHH-------------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHH-------------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 1223334 444445555555555555555443 223
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----CCCChHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYG----VVPTIEHYT 485 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~ 485 (660)
...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+... .......+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 4566667777777777777777777777653 33455677777777788888888888887765311 111223345
Q ss_pred HHHHHHhhc----------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchH
Q 048281 486 CVIDMLGRA----------GQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 486 ~l~~~~~~~----------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
.+..+|.+. |++++|...++++.. +.+..+|..+..+|...|++++|...+++++++.|.++...
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 556677777 999999999988653 45678899999999999999999999999999999876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3e-18 Score=172.45 Aligned_cols=305 Identities=11% Similarity=0.009 Sum_probs=233.4
Q ss_pred hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 048281 235 RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVH 311 (660)
Q Consensus 235 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 311 (660)
...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455666677777788888888887777764 33556777777777777777777777777653 2456677777777
Q ss_pred HHcCChHHHHHHHHHHhhcCCCC---CHH-HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHH
Q 048281 312 EQCGNHDGTLRLFDRMLSAGFQP---DLV-TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMD 387 (660)
Q Consensus 312 ~~~g~~~~a~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 387 (660)
...|++++|...|++..+. .| +.. .+..+... .. ...+..+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~------------------------~~~~~~~a~ 128 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE------------------------MQRLRSQAL 128 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH------------------------HHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH------------------------HHHHHHHHH
Confidence 7777777777777777764 34 221 11111110 00 222344577
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 048281 388 MYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQG 464 (660)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 464 (660)
.+...|++++|.+.|+++. ..+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999876 4477889999999999999999999999999863 45678888899999999999999
Q ss_pred HHHHHHhHHhcCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHHc
Q 048281 465 REFLPLMESRYGVVPTIEHYT------------CVIDMLGRAGQLNEAYELALAMPN-EAN-P----VVWRTLLAASRLH 526 (660)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~ 526 (660)
...++.+.+. .+.+...+. .+...+.+.|++++|...++++.. .|+ . ..+..+..++...
T Consensus 208 ~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 9999999873 233333332 336779999999999999988653 233 3 2355678899999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999874
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.7e-18 Score=170.98 Aligned_cols=325 Identities=10% Similarity=-0.020 Sum_probs=258.3
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHH
Q 048281 199 DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALID 278 (660)
Q Consensus 199 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 278 (660)
|+..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35678888899999999999999999998853 2456788889999999999999999999999875 346678999999
Q ss_pred HHHcCCCHHHHHHHHHhcCCCCh------hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccch
Q 048281 279 MYGKGKCVGEALEIFEMMEEKDI------FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAAL 352 (660)
Q Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 352 (660)
.|...|++++|...|+++.+.++ ..+..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999999866433 22322221110 11233344556677788
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHH
Q 048281 353 MHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEA 429 (660)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 429 (660)
+.|...++.+.+..... ..++..+...|...|++++|...++++. ..+...|..+...+...|++++|
T Consensus 137 ~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWD---------AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888777765443 7888999999999999999999999876 34778999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhh
Q 048281 430 LDMFSCMCEAKLKPDEVTFV------------GVLSACSHSGFLSQGREFLPLMESRYGVVPTI----EHYTCVIDMLGR 493 (660)
Q Consensus 430 ~~~~~~m~~~g~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 493 (660)
...+++..+.. +.+...+. .+...+...|++++|...++.+.+. . +.+. ..+..+..+|..
T Consensus 208 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 208 LSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHH
Confidence 99999999853 22333332 2255688999999999999999874 2 2223 335668899999
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 048281 494 AGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 560 (660)
.|++++|...+++... +.+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999998654 457889999999999999999999999999999999988888777776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.7e-18 Score=167.77 Aligned_cols=286 Identities=11% Similarity=-0.008 Sum_probs=209.5
Q ss_pred CCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 048281 267 DSGVPVMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVL 343 (660)
Q Consensus 267 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 343 (660)
+.+..++..++..+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44555666666677777777777777776643 234456666677777777777777777777642 22345566666
Q ss_pred HHHhccc-chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHH
Q 048281 344 PACSHLA-ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILG 419 (660)
Q Consensus 344 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 419 (660)
..+...| +++.|...++.+....... ...+..+...|...|++++|...|+++. ..+...+..+...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTY---------GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTC---------THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCcc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 6677777 7777777777776654333 5677778888888888888888887765 2345677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHh
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYG-------VVPTIEHYTCVIDMLG 492 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~ 492 (660)
|...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+..+|.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 888888888888888888753 44567777788888888888888888888876321 1334578888888899
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhCCCh
Q 048281 493 RAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY-VAGGKY 563 (660)
Q Consensus 493 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 563 (660)
+.|++++|...+++... +.+...|..+..++...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999988887643 456778888889999999999999999999999998888888888888 455554
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.7e-16 Score=166.95 Aligned_cols=351 Identities=9% Similarity=-0.013 Sum_probs=237.1
Q ss_pred cCChHHHHHHHccCCC-CCchhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCch
Q 048281 182 CQFMEEALKVFEELPL-RDVVLWNAMVNGYAQ----IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIM----MGFFK 252 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~ 252 (660)
.+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444443322 233344444444444 455555555555554432 23333334444444 44555
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCChHHHHHH
Q 048281 253 NGRVVHGIVVKMGYDSGVPVMNALIDMYGK----GKCVGEALEIFEMMEE-KDIFSWNSIMTVHEQ----CGNHDGTLRL 323 (660)
Q Consensus 253 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~ 323 (660)
+|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|+++
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555555555443 34445555555655 5667777777766543 355666667777766 6777777777
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh----cCCH
Q 048281 324 FDRMLSAGFQPDLVTFSTVLPACSH----LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK----CGSM 395 (660)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 395 (660)
|++..+.| +...+..+...+.. .++.++|...++...+.+. ...+..+..+|.. .++.
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN-----------SIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC-----------HHHHHHHHHHHHHTTTSSCCH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHCCCCCCCCH
Confidence 77777654 34444455555543 6677777777777765532 5566667777777 7889
Q ss_pred HHHHHHHhcCCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHH
Q 048281 396 RDAQMVFTKMSK-KDVASWNIMILGYGMD-----GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG---FLSQGRE 466 (660)
Q Consensus 396 ~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~ 466 (660)
++|...|++..+ .+...+..+...|... +++++|+.+|++..+.| +...+..+...+...| +.++|.+
T Consensus 276 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 276 LKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 999999988764 4667788888888887 89999999999999875 4456666666666655 7899999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 048281 467 FLPLMESRYGVVPTIEHYTCVIDMLGR----AGQLNEAYELALAMPNEANPVVWRTLLAASRL----HGNTDLAEIAAQR 538 (660)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 538 (660)
+|+...+. .+...+..|..+|.. .+++++|...|++.....++..+..|...|.. .++.++|...|++
T Consensus 353 ~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 353 WFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999873 367788889999988 89999999999987766678899999999998 8999999999999
Q ss_pred HHhcCCC---CcchHHHHHHHHHh
Q 048281 539 VFQLEPG---HCGNYVLMSNIYVA 559 (660)
Q Consensus 539 ~~~~~p~---~~~~~~~l~~~~~~ 559 (660)
+.+..|+ ++.....++.++..
T Consensus 429 A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 429 ASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999854 66666667666554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=3.1e-17 Score=162.95 Aligned_cols=265 Identities=12% Similarity=0.016 Sum_probs=230.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcc
Q 048281 299 KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDD 378 (660)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 378 (660)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..+...+...|+++.|...+..+.+.....
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 89 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN--------- 89 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------
Confidence 466778888999999999999999999998763 2334456667778889999999999999999876544
Q ss_pred hhHHHHHHHHHHhcC-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCG-SMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSA 454 (660)
Q Consensus 379 ~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 454 (660)
..++..+...|...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHH
Confidence 778999999999999 99999999998763 356789999999999999999999999999864 3345677778889
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-----------EANPVVWRTLLAAS 523 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~ 523 (660)
+...|++++|...++.+.+ ..+.+...+..+...|...|++++|...++++.. +....+|..+..++
T Consensus 169 ~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 9999999999999999987 3455678999999999999999999999987532 23457899999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999987663
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1e-14 Score=160.37 Aligned_cols=477 Identities=11% Similarity=0.066 Sum_probs=334.5
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHcc-------------CCCCCCc--
Q 048281 35 CIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNN-------------LSCEPNV-- 99 (660)
Q Consensus 35 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-------------~~~~~~~-- 99 (660)
...|+..+-+.+++..-...++.-...|. .++.++|+|...|...++-++. ++.+ ....|..
T Consensus 842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~ 918 (1630)
T 1xi4_A 842 TDELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLAC 918 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHH
Confidence 44566666666777666666776677774 5888999999999876543332 1110 0011111
Q ss_pred ------ccHHHHHHHHHcCCChhH-HHHHHH-----------------------HHHHCCC--CCCcccHHHHHHHHhhh
Q 048281 100 ------FTYNAMISGFYSNDFAFK-GLDFFN-----------------------HMRQLGV--LPDKYTFPCLIKCCCDV 147 (660)
Q Consensus 100 ------~~~~~li~~~~~~~~~~~-a~~~~~-----------------------~m~~~~~--~p~~~t~~~ll~~~~~~ 147 (660)
..-.-||....+++-++. |.-+++ +-....+ .-|+.--....++|...
T Consensus 919 iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~a 998 (1630)
T 1xi4_A 919 VAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTA 998 (1630)
T ss_pred HHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhC
Confidence 112234444444443322 221111 1111110 12333446678888899
Q ss_pred CCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHH
Q 048281 148 MAVLEVKKIHGLVFKLG--LDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRR 225 (660)
Q Consensus 148 ~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 225 (660)
|.+.+|.++++...-.+ +.-+....+.|+.+..+. +..+.....++...-+ ...+...+...|.+++|..+|++
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkK 1074 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRK 1074 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999988432 113445666677777666 4566666665555333 44577788889999999999998
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHH
Q 048281 226 MSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWN 305 (660)
Q Consensus 226 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (660)
.. -.....+.++ ...+++++|.++.... .+..+|..+..++.+.|++++|+..|.+. .|...|.
T Consensus 1075 a~-----~~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1075 FD-----VNTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred cC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 52 1111122222 2667888888887754 34778999999999999999999999764 6778889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHH
Q 048281 306 SIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNAL 385 (660)
Q Consensus 306 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (660)
.++..+.+.|++++|.+.|....+.. ++....+.+..+|++.++++....+. . .++ ...+..+
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n--------~ad~~~i 1201 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN--------NAHIQQV 1201 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC--------HHHHHHH
Confidence 99999999999999999999877654 33333345888889988887544442 1 122 4456679
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 048281 386 MDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGR 465 (660)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 465 (660)
.+.|...|++++|...|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|++..|.
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999985 58999999999999999999999977 35688999999999999999998
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Q 048281 466 EFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH--GNTDLAEIAAQRVFQ 541 (660)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 541 (660)
...-. +..+...+..++..|.+.|.+++|+.+++.... +.....|.-|...|.+. ++..++.+.|..-..
T Consensus 1271 ~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1271 MCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 86654 334566788999999999999999999988643 34556776676666654 466777777776666
Q ss_pred cCC-----CCcchHHHHHHHHHhCCChHHHHH
Q 048281 542 LEP-----GHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 542 ~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
..| .++..|..+.-+|.+.|.|+.|..
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 544 566789999999999999999984
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.2e-15 Score=162.05 Aligned_cols=411 Identities=8% Similarity=-0.009 Sum_probs=264.1
Q ss_pred CcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCC--CCchhHHHHHHH-
Q 048281 133 DKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPL--RDVVLWNAMVNG- 209 (660)
Q Consensus 133 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~- 209 (660)
|...|..++.. .+.|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55567777763 66777888888888777652 33556677777777777777777777777653 455556655542
Q ss_pred HHhCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHHc---------cCCchhHHHHHHHHHHhCCCCCchHHH
Q 048281 210 YAQIGEFHKALE----VFRRMSK-EGIWMS-RFTVTGVLSALIM---------MGFFKNGRVVHGIVVKMGYDSGVPVMN 274 (660)
Q Consensus 210 ~~~~~~~~~A~~----~~~~m~~-~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 274 (660)
....|+.+.|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+..++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566666554 4554433 243333 2334444433322 344555555555554411000011111
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHH------hhcC---CCCCH--------H
Q 048281 275 ALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRM------LSAG---FQPDL--------V 337 (660)
Q Consensus 275 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~g---~~p~~--------~ 337 (660)
.........+. ..+..++. .+.+++..|..+++++ .+.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11110000000 00011110 0234556666666652 2221 24431 2
Q ss_pred HHHHHHHHHhc----ccch----HHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh-------cCCHH------
Q 048281 338 TFSTVLPACSH----LAAL----MHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK-------CGSMR------ 396 (660)
Q Consensus 338 t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~------ 396 (660)
.|...+..... .++. ..+..+++.++...+.. +.+|..++..+.+ .|+++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~---------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH---------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 33333322211 1222 36677888887764433 7888888888876 79987
Q ss_pred -HHHHHHhcCCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH
Q 048281 397 -DAQMVFTKMSK---K-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDE--VTFVGVLSACSHSGFLSQGREFLP 469 (660)
Q Consensus 397 -~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~ 469 (660)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999998763 3 5789999999999999999999999999984 5653 478888888889999999999999
Q ss_pred HhHHhcCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 470 LMESRYGVVPTIEHYTCVIDM-LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.+.+. .+.+...|...+.. +...|+.++|..+|++... +.++..|..++..+...|+.++|..+|++++...|.+
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 99863 22233444433333 3468999999999998654 4568899999999999999999999999999987766
Q ss_pred cc----hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 547 CG----NYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 547 ~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+. .|...+......|+.+.+.++.+++.+.
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 6777788888899999999999988664
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=6.8e-18 Score=166.70 Aligned_cols=353 Identities=14% Similarity=0.069 Sum_probs=161.4
Q ss_pred hcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHH
Q 048281 181 KCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGI 260 (660)
Q Consensus 181 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 260 (660)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567788888888888555 48888888888888888888888653 5777888888888888888888887777
Q ss_pred HHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHH
Q 048281 261 VVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFS 340 (660)
Q Consensus 261 ~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 340 (660)
.++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 4456778888899999999988887775 367778999999999999999999999876 3688
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 048281 341 TVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGY 420 (660)
Q Consensus 341 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 420 (660)
.+..++.+.|+++.|.+.+..+ .+ +.+|..++.+|...|+++.|......+. ..+.-...++..|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~--------~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Y 217 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NS--------TRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYY 217 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TC--------HHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CC--------chhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHH
Confidence 8888889999999988888877 23 7888999999999999999987777655 3444455688889
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhc
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVP------TIEHYTCVIDMLGRA 494 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 494 (660)
.+.|++++|+.+++...... +-....|+.+.-++++- ++++..+.++...++.+++| +...|..++-.|...
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999887643 33445566655555543 33444333333333335555 456788899999999
Q ss_pred CCHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 048281 495 GQLNEAYELALAMPN--------------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 495 g~~~~A~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 560 (660)
++++.|....-+-+. ..+..+|-..+..|. +....++.-+-.++. |. .-+......+.+.
T Consensus 296 ~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~--~~--ld~~r~v~~~~~~ 369 (449)
T 1b89_A 296 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS--PR--LDHTRAVNYFSKV 369 (449)
T ss_dssp TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG--GG--CCHHHHHHHHHHT
T ss_pred chHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH--hc--cCcHHHHHHHHHc
Confidence 999988887655431 123444444444444 222223333333331 11 1134456666777
Q ss_pred CChHHHHHHHHHHHhCCC
Q 048281 561 GKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 561 g~~~~a~~~~~~~~~~~~ 578 (660)
|.+.-+..++..++..+.
T Consensus 370 ~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 370 KQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp TCTTTTHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHHhhH
Confidence 777777777777766554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=2.3e-17 Score=166.80 Aligned_cols=280 Identities=9% Similarity=-0.078 Sum_probs=213.8
Q ss_pred cCCCHHHHHH-HHHhcCC--C-----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchH
Q 048281 282 KGKCVGEALE-IFEMMEE--K-----DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALM 353 (660)
Q Consensus 282 ~~~~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 353 (660)
-.|++++|.. .|++..+ + +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7775443 1 24567777888888888888888888887753 334556777777788888888
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHH---------------
Q 048281 354 HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK--K-DVASWNI--------------- 415 (660)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~--------------- 415 (660)
.|...+..+....... ..++..+...|...|++++|.+.|+++.. | +...+..
T Consensus 116 ~A~~~~~~al~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 116 LAISALRRCLELKPDN---------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 8888888887775443 67788888888888888888888887652 1 2222211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA 494 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 494 (660)
.+..+...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+..+|.+.
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANG 264 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHc
Confidence 1333348899999999999999863221 4788889999999999999999999999873 345678999999999999
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhCC
Q 048281 495 GQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH-----------CGNYVLMSNIYVAGG 561 (660)
Q Consensus 495 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g 561 (660)
|++++|...++++.. +.+..+|..+..+|...|++++|...+++++++.|++ +.+|..++.+|...|
T Consensus 265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 999999999998643 4567899999999999999999999999999998877 788999999999999
Q ss_pred ChHHHHHHHHHH
Q 048281 562 KYEEVLDIRHTM 573 (660)
Q Consensus 562 ~~~~a~~~~~~~ 573 (660)
++++|..++++.
T Consensus 345 ~~~~A~~~~~~~ 356 (368)
T 1fch_A 345 QSDAYGAADARD 356 (368)
T ss_dssp CGGGHHHHHTTC
T ss_pred ChHhHHHhHHHH
Confidence 999999987743
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=4.8e-15 Score=155.84 Aligned_cols=352 Identities=12% Similarity=0.032 Sum_probs=296.7
Q ss_pred CCchhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCchhHHHHHHHHHHhCCCCC
Q 048281 198 RDVVLWNAMVNGYAQ----IGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIM----MGFFKNGRVVHGIVVKMGYDSG 269 (660)
Q Consensus 198 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 269 (660)
.+..++..+...|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 366667777777777 899999999999998864 55677778888888 899999999999998875 5
Q ss_pred chHHHHHHHHHHc----CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCCCHHHHH
Q 048281 270 VPVMNALIDMYGK----GKCVGEALEIFEMMEEK-DIFSWNSIMTVHEQ----CGNHDGTLRLFDRMLSAGFQPDLVTFS 340 (660)
Q Consensus 270 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~ 340 (660)
...+..|...|.. .+++++|...|++..+. +..++..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777888889988 78999999999987654 67788888888988 789999999999999875 566666
Q ss_pred HHHHHHhc----ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHh
Q 048281 341 TVLPACSH----LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK----CGSMRDAQMVFTKMSK-KDVA 411 (660)
Q Consensus 341 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~ 411 (660)
.+...+.. .++.++|...+....+.+. +..+..+..+|.. .++.++|...|++..+ .+..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 256 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSGD-----------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSI 256 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 77777766 7899999999999987652 6678888888886 8999999999998764 4677
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCChH
Q 048281 412 SWNIMILGYGM----DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS-----GFLSQGREFLPLMESRYGVVPTIE 482 (660)
Q Consensus 412 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~ 482 (660)
.+..+...|.. .++.++|+.+|++..+.| +...+..+...+... ++.++|...++...+. + +..
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~ 329 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DAT 329 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHH
Confidence 88888888888 899999999999998865 455666677777776 8999999999999873 3 456
Q ss_pred HHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048281 483 HYTCVIDMLGRAG---QLNEAYELALAMPNEANPVVWRTLLAASRL----HGNTDLAEIAAQRVFQLEPGHCGNYVLMSN 555 (660)
Q Consensus 483 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 555 (660)
.+..|..+|.+.| +.++|.+.|++.....++..+..|...|.. .++.++|...++++.+.. ++..+..|+.
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~ 407 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 7888888888766 889999999987766788999999999999 899999999999998864 5788999999
Q ss_pred HHHh----CCChHHHHHHHHHHHhCCC
Q 048281 556 IYVA----GGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 556 ~~~~----~g~~~~a~~~~~~~~~~~~ 578 (660)
+|.. .+++++|...+++..+.+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998 8999999999999988763
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.8e-16 Score=153.55 Aligned_cols=280 Identities=11% Similarity=0.091 Sum_probs=93.7
Q ss_pred cCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHH
Q 048281 79 KCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHG 158 (660)
Q Consensus 79 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 158 (660)
+.|++++|.++++ ..+.| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++
T Consensus 15 ~~~~ld~A~~fae-~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAE-RCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHH-hCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5678899999998 55555 48999999999999999999999653 577789999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 048281 159 LVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTV 238 (660)
Q Consensus 159 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~ 238 (660)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 45577888899999999999998887753 66678888888888888888888888865 245
Q ss_pred HHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChH
Q 048281 239 TGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHD 318 (660)
Q Consensus 239 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (660)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 55555555555555555555544 244555555555555555555544444333 22222333455555555555
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh--cCCHH
Q 048281 319 GTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK--CGSMR 396 (660)
Q Consensus 319 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~ 396 (660)
+|+.+++.... ..... ..+|+-|.-.|++ .+++.
T Consensus 225 Eai~lLe~aL~-----------------------------------le~ah---------~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 225 ELITMLEAALG-----------------------------------LERAH---------MGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp HHHHHHHHHTT-----------------------------------STTCC---------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhC-----------------------------------CcHHH---------HHHHHHHHHHHHhcCHHHHH
Confidence 55555555442 22111 3333444444433 34444
Q ss_pred HHHHHHhcCCC--------CCHhHHHHHHHHHHhcCChHHHHHH
Q 048281 397 DAQMVFTKMSK--------KDVASWNIMILGYGMDGQGKEALDM 432 (660)
Q Consensus 397 ~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 432 (660)
+.++.|..-.. .+...|..+...|.+.++++.|...
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 55555543221 1456788888888888888877763
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=1.2e-13 Score=152.07 Aligned_cols=446 Identities=11% Similarity=0.050 Sum_probs=272.8
Q ss_pred hhHHHHHHHHhHcCCChhHHHHHHccCCCCC-----CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 048281 67 PLSITSLINMYSKCCQMKYALFVFNNLSCEP-----NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLI 141 (660)
Q Consensus 67 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 141 (660)
+.--...+.+|...|.+.+|++++++....| +...-|.++....+. +..+..+..++.... ...-+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHH
Confidence 3344555666666677777777776422222 223445555555555 344455544444311 133355
Q ss_pred HHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHH
Q 048281 142 KCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALE 221 (660)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 221 (660)
..|...|.+++|..+|++.. ......+.++. ..+++++|.++.+++. +..+|..+..++...|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 66667777777777777641 11111222222 5677777777777663 35677788888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh
Q 048281 222 VFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDI 301 (660)
Q Consensus 222 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 301 (660)
.|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++...+. ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 88553 456677778888888888888888888777654 33333445788888888877544443 34566
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhH
Q 048281 302 FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFM 381 (660)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (660)
..|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+ ..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n--------~~a 1252 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS--------TRT 1252 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC--------HHH
Confidence 66777888888888888888888874 36777888888888888888877765 22 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--ccC
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS--HSG 459 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~g 459 (660)
|..+..++...|++..|...... ...+...+..++..|.+.|.+++|+.+++...... +-....|+-+...++ +.+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 77777788888888888877654 23345556677888888888888888887776432 222234444444443 334
Q ss_pred CHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------------CCCCCHHHHHHH
Q 048281 460 FLSQGREFLPLMESRYGVVP------TIEHYTCVIDMLGRAGQLNEAYELALAM--------------PNEANPVVWRTL 519 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~l 519 (660)
++.++.++|..- .+++| +...|..++-.|.+.|+++.|....-+- ....++..|...
T Consensus 1331 klmEhlk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyka 1407 (1630)
T 1xi4_A 1331 KMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 1407 (1630)
T ss_pred HHHHHHHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHH
Confidence 444555554432 24433 4566788888888888888887433221 123455666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 520 LAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+..|... ..+++.-+..++. |. .-+......+.+.|.+.-+..+++.+..
T Consensus 1408 i~Fyl~~--~P~~lndLl~~l~--~r--lD~~R~V~l~~~~~~l~lik~yl~~vq~ 1457 (1630)
T 1xi4_A 1408 IQFYLEF--KPLLLNDLLMVLS--PR--LDHTRAVNYFSKVKQLPLVKPYLRSVQN 1457 (1630)
T ss_pred HHHHHhh--ChHHHHHHHHHhh--hc--CChHHHHHHHHHcCChHHhHHHHHHHHH
Confidence 6666532 2333333333322 11 1123345555555666666666555543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=3.5e-17 Score=165.26 Aligned_cols=261 Identities=10% Similarity=-0.096 Sum_probs=209.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcch
Q 048281 300 DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDV 379 (660)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 379 (660)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+....... .
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------~ 133 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN---------L 133 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------H
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------H
Confidence 44568888888888888888888888888763 3356677888888888888888888888888775443 7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSKKD-------------VASWNIMILGYGMDGQGKEALDMFSCMCEAKLK-PDE 445 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~ 445 (660)
.++..+...|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++.
T Consensus 134 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 134 KALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 788888999999999999999988875311 223445688899999999999999999986422 157
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAAS 523 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 523 (660)
.++..+...+...|++++|...++++.+. .+.+..++..+..+|.+.|++++|...|+++.. +.+..+|..+..+|
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 88999999999999999999999999873 455678999999999999999999999998654 45688999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPG------------HCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
...|++++|...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999998776 357889999999999999998887665
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.4e-15 Score=147.36 Aligned_cols=270 Identities=7% Similarity=-0.071 Sum_probs=212.2
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchH
Q 048281 278 DMYGKGKCVGEALEIFEMMEEKDI----FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALM 353 (660)
Q Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 353 (660)
.-....|+++.|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344557888999988887765432 3445677889999999998876654 13566678888888888888999
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 048281 354 HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMF 433 (660)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 433 (660)
.|.+.++.++..+..|+ +...+..+..+|.+.|++++|++.+++ ..+...+..++..|.+.|++++|...|
T Consensus 83 ~A~~~l~~ll~~~~~P~-------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVT-------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHSCCCCS-------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999998887764332 167788888999999999999999998 567889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 048281 434 SCMCEAKLKPDEVTFV---GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN- 509 (660)
Q Consensus 434 ~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 509 (660)
+++.+. .|+..... ..+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|...++++..
T Consensus 154 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999986 46643221 2233444568999999999999984 566888999999999999999999999998644
Q ss_pred -CCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 510 -EANPVVWRTLLAASRLHGNTDL-AEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 510 -~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
+.++.+|..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 4577899999999999999876 6789999999999987543 34444555555443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=6.4e-15 Score=156.52 Aligned_cols=410 Identities=10% Similarity=0.029 Sum_probs=286.6
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 048281 96 EPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSAL 175 (660)
Q Consensus 96 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 175 (660)
+-+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 347778999998 478999999999999999752 2256678899999999999999999999999864 577777777
Q ss_pred HHHh-HhcCChHHHHH----HHccCC------CCCchhHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCCh
Q 048281 176 VNTY-LKCQFMEEALK----VFEELP------LRDVVLWNAMVNGYAQ---------IGEFHKALEVFRRMSKEGIWMSR 235 (660)
Q Consensus 176 i~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~ 235 (660)
+... ...|+.++|.+ +|+... ..+...|...+..... .|+++.|.++|++..+. |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~ 162 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI 162 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence 6533 35677766654 666542 2356778888876655 68899999999999872 332
Q ss_pred ---hhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHh-------cCC------C
Q 048281 236 ---FTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEM-------MEE------K 299 (660)
Q Consensus 236 ---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~-------~~~------~ 299 (660)
..|..........|. . +...++. .+.++++.|..++.. +.. |
T Consensus 163 ~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred hHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222222111111110 0 0111110 122344555554443 111 1
Q ss_pred C--------hhhHHHHHHHHHHc----CCh----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-------ccchH---
Q 048281 300 D--------IFSWNSIMTVHEQC----GNH----DGTLRLFDRMLSAGFQPDLVTFSTVLPACSH-------LAALM--- 353 (660)
Q Consensus 300 ~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~--- 353 (660)
+ ...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 23455555433322 232 37778888888752 2345566666666654 68876
Q ss_pred ----HHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CH-hHHHHHHHHHHhcCC
Q 048281 354 ----HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--KK-DV-ASWNIMILGYGMDGQ 425 (660)
Q Consensus 354 ----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~ 425 (660)
.|..+++..+..-.+.+ ..++..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~--------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKN--------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCccc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 88999988876322223 8899999999999999999999999876 33 33 589999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 048281 426 GKEALDMFSCMCEAKLKPDEVTFVGVLSA-CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELA 504 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 504 (660)
.++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 999999999999853 2233333332222 33589999999999999874 3346789999999999999999999999
Q ss_pred HhCCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 505 LAMPN----EA--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 505 ~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
++... .| ....|...+.....+|+.+.+..+++++.+..|++
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 98643 22 23489999999999999999999999999988853
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.8e-16 Score=157.21 Aligned_cols=271 Identities=9% Similarity=-0.022 Sum_probs=179.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 048281 272 VMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSH 348 (660)
Q Consensus 272 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (660)
.+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344455555555555555555555432 233445555555555555555555555555431 1233344444444444
Q ss_pred ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHH-HH-HHHhcCCh
Q 048281 349 LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIM-IL-GYGMDGQG 426 (660)
Q Consensus 349 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 426 (660)
.|+++.|...+..+.+...... ..+..+.... ++......+ .. .+...|++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYE---------QLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTT---------TC--------------------------------------CCTTSHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccH---------HHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccH
Confidence 4455555444444443322211 1111110000 000001111 22 36777889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 427 KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 427 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...+++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998864 346778888888999999999999999999873 345678899999999999999999999988
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 507 MPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG------------HCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 507 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
+.. +.+..+|..+..++...|++++|...++++++..|+ ++..+..++.++...|++++|..++++
T Consensus 232 a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 643 456789999999999999999999999999999998 688999999999999999999999875
Q ss_pred H
Q 048281 573 M 573 (660)
Q Consensus 573 ~ 573 (660)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 4
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=3.2e-16 Score=158.28 Aligned_cols=293 Identities=12% Similarity=0.023 Sum_probs=146.4
Q ss_pred hcCChHHHHH-HHccCCC--C-----CchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCch
Q 048281 181 KCQFMEEALK-VFEELPL--R-----DVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFK 252 (660)
Q Consensus 181 ~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 252 (660)
-.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3456666665 5554331 1 23445566666666666666666666665542
Q ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 253 NGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 253 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
+.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..++++.+
T Consensus 95 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 95 --------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12333444455555555555555555554432 2445566666666666777777777766665
Q ss_pred cCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--C
Q 048281 330 AGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--K 407 (660)
Q Consensus 330 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~ 407 (660)
.. |+........ +.... ...+ ...+..+...+ ..|++++|...|+++. .
T Consensus 161 ~~--~~~~~~~~~~------~~~~~-----------~~~~---------~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~ 211 (368)
T 1fch_A 161 YT--PAYAHLVTPA------EEGAG-----------GAGL---------GPSKRILGSLL-SDSLFLEVKELFLAAVRLD 211 (368)
T ss_dssp TS--TTTGGGCC-----------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHS
T ss_pred hC--cCcHHHHHHH------HHHhh-----------hhcc---------cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC
Confidence 42 2221110000 00000 0000 00111111122 4455555555555443 1
Q ss_pred C---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHH
Q 048281 408 K---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHY 484 (660)
Q Consensus 408 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 484 (660)
| +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+
T Consensus 212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 288 (368)
T 1fch_A 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSR 288 (368)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 1 34455556666666666666666666665542 223455556666666666666666666666552 23345566
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCC--CCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 485 TCVIDMLGRAGQLNEAYELALAMPN--EAN-----------PVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 485 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
..+..+|.+.|++++|...++++.. +.+ ..+|..+..+|...|+.++|..++++.++
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 6666666666666666666655432 111 56777777777777777777777665443
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=4.6e-15 Score=155.40 Aligned_cols=282 Identities=8% Similarity=-0.063 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHhcCC--C-ChhhHHHHHHH---HHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHh----cccchH
Q 048281 284 KCVGEALEIFEMMEE--K-DIFSWNSIMTV---HEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACS----HLAALM 353 (660)
Q Consensus 284 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~ 353 (660)
+++++|+..|++..+ | ++..+..+... +...++.++|++.+++..+.. +.+...+..+...+. ..++.+
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence 346666666666542 2 33334333333 334456666777666666542 112233333332222 234556
Q ss_pred HHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHh--------
Q 048281 354 HGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGM-------- 422 (660)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~-------- 422 (660)
.|.+.++......... ..++..+...|.+.|++++|...|++.. ..+..+|..+..+|..
T Consensus 231 ~a~~~~~~al~~~~~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGV---------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp HHHHHHHHHHHHCSSC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCccH---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 6667766666655443 5666677777777777777777777654 2244555555554432
Q ss_pred -----------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh--HHHHHHHH
Q 048281 423 -----------DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI--EHYTCVID 489 (660)
Q Consensus 423 -----------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~ 489 (660)
.+..++|+..+++..+.. +.+..++..+...+...|++++|...|+++.+. ...+.. ..+..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGN 379 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHH
Confidence 223567888888887753 334556777888899999999999999998762 332221 12333333
Q ss_pred H-HhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 048281 490 M-LGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVL 567 (660)
Q Consensus 490 ~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 567 (660)
. +...|+.++|+..|++... .|+...+. +..+.+..++++.++.+|+++.+|..|+.+|...|++++|+
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2 3467899999999887532 34433222 22344567788888899999999999999999999999999
Q ss_pred HHHHHHHhCCCccCCcEEE
Q 048281 568 DIRHTMRQQNVRKNPGCSW 586 (660)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~ 586 (660)
+.+++..+.+...+...+|
T Consensus 451 ~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSW 469 (472)
T ss_dssp -------------------
T ss_pred HHHHHHHhcCCCCCcHhhc
Confidence 9999998876544333333
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=4.9e-16 Score=156.82 Aligned_cols=231 Identities=12% Similarity=0.036 Sum_probs=195.5
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHh
Q 048281 335 DLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVA 411 (660)
Q Consensus 335 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 411 (660)
+...+......+.+.|+++.|...++.++...... ..++..+...|.+.|++++|...|+++. ..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 134 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD---------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLK 134 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 34457778888999999999999999999886544 8899999999999999999999999876 34678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDE-----------VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT 480 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 480 (660)
+|..+..+|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|..+++++.+.....++
T Consensus 135 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 135 ALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 9999999999999999999999999985 3332 22334577889999999999999999884222236
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
..++..+..+|.+.|++++|.+.++++.. +.+..+|..++.+|...|++++|+..+++++++.|+++.++..++.+|.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 88999999999999999999999998654 4578899999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048281 559 AGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~~~~ 576 (660)
..|++++|...++++.+.
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999999764
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.7e-15 Score=146.66 Aligned_cols=246 Identities=11% Similarity=0.023 Sum_probs=200.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCCH--HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHH
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSAGFQPDL--VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNAL 385 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 385 (660)
|+-....|++..|+..++..... .|+. .....+.+++...|+++.|...++. . .+++...+..+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~--------~~~~~~a~~~l 71 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S--------SAPELQAVRMF 71 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T--------SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c--------CChhHHHHHHH
Confidence 34556789999999998876543 4544 3445667899999999998865432 1 12237788899
Q ss_pred HHHHHhcCCHHHHHHHHhcCC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 048281 386 MDMYTKCGSMRDAQMVFTKMS----KK-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF 460 (660)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 460 (660)
...+...|+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999864 24 566788888999999999999999997 4677888889999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 048281 461 LSQGREFLPLMESRYGVVPTIEH---YTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIA 535 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 535 (660)
+++|.+.++.+.+. .|+... ...++..+...|++++|..+|+++.. +.++..|+.+..++...|++++|+..
T Consensus 146 ~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999874 354321 12344555566999999999998754 56788999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCChHH-HHHHHHHHHhC
Q 048281 536 AQRVFQLEPGHCGNYVLMSNIYVAGGKYEE-VLDIRHTMRQQ 576 (660)
Q Consensus 536 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 576 (660)
++++++++|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999986 57899988774
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.4e-14 Score=149.89 Aligned_cols=380 Identities=10% Similarity=-0.055 Sum_probs=223.1
Q ss_pred cccHHHHHHHHhhhCCHHHHHHHHHHHHHh-----C--CCC-ChhHHHHHHHHhHhcCChHHHHHHHccCC-------CC
Q 048281 134 KYTFPCLIKCCCDVMAVLEVKKIHGLVFKL-----G--LDL-DVYIGSALVNTYLKCQFMEEALKVFEELP-------LR 198 (660)
Q Consensus 134 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~ 198 (660)
...|+.+...+...|++++|.+.+++.++. + ..| ...+|+.+..+|...|++++|...+++.. .+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666655442 1 122 34577888888888999988888876543 11
Q ss_pred ----CchhHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HHccCCchhHHHHHHHHHHhCCCC
Q 048281 199 ----DVVLWNAMVNGYAQ--IGEFHKALEVFRRMSKEGIWMSR-FTVTGVLSA---LIMMGFFKNGRVVHGIVVKMGYDS 268 (660)
Q Consensus 199 ----~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~ 268 (660)
...++..+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.+.|...++..++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 23455555555544 45789999999999874 3543 334333333 445678888999998888775 33
Q ss_pred CchHHHHHHHHHHc----CCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH-HHHH
Q 048281 269 GVPVMNALIDMYGK----GKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL-VTFS 340 (660)
Q Consensus 269 ~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~ 340 (660)
+..++..+...+.. .+++++|.+.+++... .+..++..+...|...|++++|+..+++..+. .|+. ..+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 45555555544443 4677889998887643 45678888999999999999999999998876 4543 3444
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHH
Q 048281 341 TVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMI 417 (660)
Q Consensus 341 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 417 (660)
.+...+...+.... .. ............+..+.|...|+... ..+..+|..+.
T Consensus 286 ~lg~~y~~~~~~~~---------~~---------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg 341 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NL---------------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC---------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhh---------hH---------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHH
Confidence 43333321111000 00 00001111112234567777777654 34567889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPDEV--TFVGVLS-ACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA 494 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 494 (660)
..|...|++++|+..|++..+....|... .+..+.. .....|+.++|+..|.+..+ +.|+........
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~------ 412 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK------ 412 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH------
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH------
Confidence 99999999999999999999864333221 2222222 34578999999999999876 445543322222
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 048281 495 GQLNEAYELALAMP--NEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMS 554 (660)
Q Consensus 495 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 554 (660)
..+.+++++.. .+.++.+|..+..+|...|++++|++.|++++++.|.+|.+...+|
T Consensus 413 ---~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 ---DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 22333333321 2456789999999999999999999999999999998887766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=2.8e-14 Score=141.24 Aligned_cols=229 Identities=10% Similarity=-0.007 Sum_probs=112.4
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHH
Q 048281 200 VVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDM 279 (660)
Q Consensus 200 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 279 (660)
...|..+...+...|++++|+++|+++.+... .+...+..+...+...|+++.|...++.+.+.. +
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~------------ 86 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P------------ 86 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c------------
Confidence 34455666667777777777777777665321 233344444444444444444444444444332 1
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHH-HHHHH-------------HH-
Q 048281 280 YGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLV-TFSTV-------------LP- 344 (660)
Q Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l-------------l~- 344 (660)
.+..+|..+...+...|++++|.+.++++.+.. |+.. .+..+ ..
T Consensus 87 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 87 -------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------
T ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 234455556666666666666666666665542 2221 11111 02
Q ss_pred -HHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHH
Q 048281 345 -ACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGY 420 (660)
Q Consensus 345 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 420 (660)
.+...|+++.|...+..+.+..... ..++..+...|.+.|++++|.+.++++. ..+..+|..+...+
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMNPND---------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL 216 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 2455566666666666655544332 4455555555555555555555555433 12334444455555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++.+.+
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555544431 22333444444444444455555444444443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=8.8e-17 Score=171.19 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=117.8
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHcc------CCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 048281 66 SPLSITSLINMYSKCCQMKYALFVFNN------LSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPC 139 (660)
Q Consensus 66 ~~~~~~~ll~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 139 (660)
-..+||+||++||+.|++++|.++|++ .+..||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999963 13689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCC-HHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC
Q 048281 140 LIKCCCDVMA-VLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP 196 (660)
Q Consensus 140 ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 196 (660)
+|.++++.|+ .+.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.+++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 9999999998 57899999999999999999999999988877766666666655544
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=168.16 Aligned_cols=125 Identities=15% Similarity=0.154 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS-------KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGV 451 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 451 (660)
..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5689999999999999999999997753 689999999999999999999999999999999999999999999
Q ss_pred HHHHhccCC-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 048281 452 LSACSHSGF-LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELA 504 (660)
Q Consensus 452 l~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 504 (660)
|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 999999997 47899999999996 99999999999998777765555544443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=9.6e-15 Score=135.03 Aligned_cols=193 Identities=15% Similarity=-0.008 Sum_probs=159.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048281 378 DVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSA 454 (660)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 454 (660)
+...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 37788899999999999999999999865 3467899999999999999999999999999863 3356678888889
Q ss_pred Hhcc-----------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 048281 455 CSHS-----------GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAA 522 (660)
Q Consensus 455 ~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 522 (660)
+... |++++|...++.+.+. .+.+...+..+..+|...|++++|+..|++... ..++..|..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 9999 9999999999999873 344578899999999999999999999988532 2678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
+...|++++|+..++++++++|+++..+..++.++...|++++|...+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=4.1e-14 Score=134.74 Aligned_cols=187 Identities=11% Similarity=0.003 Sum_probs=148.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC------CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK------KD----VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTF 448 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 448 (660)
..++..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|+..|+++.+. .|+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-- 113 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-- 113 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH--
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH--
Confidence 44445555555555555555555554431 11 467788888889999999999999998884 45533
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc
Q 048281 449 VGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH 526 (660)
Q Consensus 449 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 526 (660)
.+...|++++|...++.+.. ..+.+...+..+...|...|++++|...++++.. +.+..+|..+..++...
T Consensus 114 -----~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 186 (258)
T 3uq3_A 114 -----ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL 186 (258)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -----HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 35556788999999999876 3344567888899999999999999999988643 45678899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 527 GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|++++|+..++++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998764
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=2.6e-13 Score=140.38 Aligned_cols=372 Identities=10% Similarity=-0.011 Sum_probs=216.5
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh---HHHHHHHccCCCCCchhHHHHHHHHHhCC--
Q 048281 140 LIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFM---EEALKVFEELPLRDVVLWNAMVNGYAQIG-- 214 (660)
Q Consensus 140 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 214 (660)
+...+.+.|++++|.++++...+.| +...+..|...|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 5566677888999999998888876 334445566666667777 88998888887667777777777565555
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhH---HHHHHHHHHhCCCCCchHHHHHHHHHHcCCC---
Q 048281 215 ---EFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNG---RVVHGIVVKMGYDSGVPVMNALIDMYGKGKC--- 285 (660)
Q Consensus 215 ---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--- 285 (660)
++++|++.|++..+.|... .+..+...+...+....+ .+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6788999999988865422 555566666555443333 33333333333 34455666666666663
Q ss_pred -HHHHHHHHHhcCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHH
Q 048281 286 -VGEALEIFEMMEEKDIFSWNSIMTVHEQCG---NHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGY 361 (660)
Q Consensus 286 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 361 (660)
.+.+..+++.....++.++..+...|...| +.++|++.|++..+.|. ++...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~----------------------- 215 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQR----------------------- 215 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHH-----------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHH-----------------------
Confidence 444555555555556667777777777777 66677777766666552 22222
Q ss_pred HHHhCccCCCCCCCCcchhHHHHHHHHHHhc----CCHHHHHHHHhcCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHH
Q 048281 362 IVVNGLAKNGSCKDIDDVFMNNALMDMYTKC----GSMRDAQMVFTKMSKKDVASWNIMILG-Y--GMDGQGKEALDMFS 434 (660)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~ 434 (660)
+..|..+|... ++.++|...|++....+...+..+... | ...+++++|+.+|+
T Consensus 216 --------------------~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 216 --------------------VDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp --------------------HHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred --------------------HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 22333333322 455666666665552244555555555 3 34677888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHH
Q 048281 435 CMCEAKLKPDEVTFVGVLSACSHSG-----FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR----AGQLNEAYELAL 505 (660)
Q Consensus 435 ~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 505 (660)
+..+.| +...+..+...|. .| ++++|..+|+... .-+...+..|..+|.. ..+.++|...|+
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 887766 4555555555555 44 8888888888764 3456677777777765 348888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH--hCCChHHHHHHHHHHHh
Q 048281 506 AMPNEANPVVWRTLLAASRL----HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV--AGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 506 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 575 (660)
+.....++.....|...|.. ..+.++|...|+++.+..+. .....+..+.. ..+...+|..+.++.++
T Consensus 347 ~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 347 TAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87666666677777777653 45788888888888876543 33334444432 23456677777776644
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=8.6e-14 Score=133.98 Aligned_cols=240 Identities=11% Similarity=-0.089 Sum_probs=177.9
Q ss_pred cCChHHHHHHHHHHhhcCCC--C-CHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHH
Q 048281 314 CGNHDGTLRLFDRMLSAGFQ--P-DLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYT 390 (660)
Q Consensus 314 ~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (660)
.|++++|+..|+++.+.... | +...+..+...+...|+++.|...+..++...... ..++..+...|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~~~~ 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------PEVFNYLGIYLT 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------HHHHHHHHHHHH
Confidence 35566666666666654211 1 23455556666666777777777777766654433 667788888888
Q ss_pred hcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048281 391 KCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREF 467 (660)
Q Consensus 391 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 467 (660)
..|++++|.+.|++.. ..+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888888888765 346778899999999999999999999999985 56655555555566777999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 468 LPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE-A-----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
++..... .+++...+ .++..+...++.++|.+.+++.... | +...|..+...|...|++++|...++++++
T Consensus 167 ~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 167 LKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9888773 33444444 4777788889999999999886652 2 257889999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 048281 542 LEPGHCGNYVLMSNIYVAGGKYEEVLDIR 570 (660)
Q Consensus 542 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 570 (660)
.+|++.. ..+.++...|++++|++.+
T Consensus 244 ~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred CCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 9997744 4477888899999988776
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.6e-14 Score=133.77 Aligned_cols=240 Identities=8% Similarity=-0.092 Sum_probs=186.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhH
Q 048281 302 FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFM 381 (660)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (660)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|+++.|...+..+.......... ......+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD--YKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--hHHHHHH
Confidence 345666677777777777777777777665 566677777777777777777777777776654322100 0000467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSK--KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG 459 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 459 (660)
+..+...|.+.|++++|...|++... ++ ...+...|++++|+..++++.... +.+...+..+...+...|
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 88899999999999999999998763 34 245667788999999999999853 234567778888999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048281 460 FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQ 537 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 537 (660)
++++|...++.+.+. .+.+...+..+..+|.+.|++++|...++++.. +.+...|..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999873 445678899999999999999999999998653 4567899999999999999999999999
Q ss_pred HHHhcC------CCCcchHHHHHH
Q 048281 538 RVFQLE------PGHCGNYVLMSN 555 (660)
Q Consensus 538 ~~~~~~------p~~~~~~~~l~~ 555 (660)
+++++. |++...+..+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 999998 877666555544
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=6.8e-13 Score=123.25 Aligned_cols=197 Identities=12% Similarity=0.015 Sum_probs=174.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048281 378 DVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSA 454 (660)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 454 (660)
+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 47788999999999999999999999875 3467899999999999999999999999999863 4467788888999
Q ss_pred Hhcc-CCHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 048281 455 CSHS-GFLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 455 ~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 530 (660)
+... |++++|...++.+.+ .+..|+ ...+..+..+|...|++++|...++++.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999987 234443 57889999999999999999999988654 446788999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 531 LAEIAAQRVFQLEP-GHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 531 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999 89889999999999999999999999998764
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=2.9e-13 Score=130.10 Aligned_cols=244 Identities=11% Similarity=-0.034 Sum_probs=134.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCH--HHHHHHHHHH
Q 048281 272 VMNALIDMYGKGKCVGEALEIFEMMEE---KDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDL--VTFSTVLPAC 346 (660)
Q Consensus 272 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~ 346 (660)
.+......+...|++++|+..|++..+ .+...|..+...+...|++++|+..+++..+.+..|+. ..+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444566677777777777777777643 24456777777777777777777777777663212221 2244555555
Q ss_pred hcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc
Q 048281 347 SHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMD 423 (660)
Q Consensus 347 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 423 (660)
...|+++.|...++.+.+..... ..++..+...|...|++++|...|++..+ .+...|..+..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~----- 150 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTR---------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ----- 150 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC---------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH-----
T ss_pred HHcccHHHHHHHHHHHHhcCccc---------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH-----
Confidence 55555555555555555543332 34455555555555555555555554432 13334444441
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC---HHHH
Q 048281 424 GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ---LNEA 500 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A 500 (660)
.+...+++++|...++.+.+. .+.+...+..+..++...|+ +++|
T Consensus 151 ------------------------------~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 151 ------------------------------AYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp ------------------------------HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHH
Confidence 222223444444444444431 12223344444444444444 3334
Q ss_pred HHHHHhCCC----CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 048281 501 YELALAMPN----EAN------PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG 561 (660)
Q Consensus 501 ~~~~~~~~~----~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 561 (660)
...++++.. .|+ ..+|..+...|...|++++|...++++++++|+++.+...+..+....+
T Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 444433221 122 2467778888999999999999999999999999887777766655443
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=5.7e-13 Score=137.79 Aligned_cols=345 Identities=9% Similarity=-0.029 Sum_probs=231.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCc---hhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 048281 205 AMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFF---KNGRVVHGIVVKMGYDSGVPVMNALIDMYG 281 (660)
Q Consensus 205 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 281 (660)
.+...+.+.|++++|+++|++..+.|- ...+..+-..+...|+. ++|...+....+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999988763 33344444555667777 8899998888755 4555666666455
Q ss_pred cCC-----CHHHHHHHHHhcCCC-ChhhHHHHHHHHHHcCChH---HHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccch
Q 048281 282 KGK-----CVGEALEIFEMMEEK-DIFSWNSIMTVHEQCGNHD---GTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAAL 352 (660)
Q Consensus 282 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 352 (660)
..+ ++++|...|++..++ +..++..|...|...+..+ ++.+.+....+.|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 544 778999999887654 5568888888888776543 45566666555553 33344455555555645
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcC---CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhc---
Q 048281 353 MHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCG---SMRDAQMVFTKMSK---KDVASWNIMILGYGMD--- 423 (660)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--- 423 (660)
+.+........+.-...+ +..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|...
T Consensus 158 ~~~~~~a~~~~~~a~~~~--------~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTT--------DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp GGGHHHHHHHHHHHTTTC--------TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS
T ss_pred ccCHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 444444333333333333 558888999999999 88999999987652 3444557777777655
Q ss_pred -CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC----
Q 048281 424 -GQGKEALDMFSCMCEAKLKPDEVTFVGVLSA-C--SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG---- 495 (660)
Q Consensus 424 -g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 495 (660)
+++++|+.+|++.. .| +...+..+... + ...+++++|..+|+...+. | +...+..|..+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCC
Confidence 68999999999987 43 44455555554 3 4688999999999999873 4 6677788888887 55
Q ss_pred -CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----CCChHHH
Q 048281 496 -QLNEAYELALAMPNEANPVVWRTLLAASRL----HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVA----GGKYEEV 566 (660)
Q Consensus 496 -~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a 566 (660)
++++|.+.|++.. +.++..+..|...|.. ..+.++|...|+++.+ ++++.....|+.+|.. ..+.++|
T Consensus 301 ~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp CCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred CCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 9999999999988 7788888888877766 3489999999999877 4567789999999986 4589999
Q ss_pred HHHHHHHHhCCCc
Q 048281 567 LDIRHTMRQQNVR 579 (660)
Q Consensus 567 ~~~~~~~~~~~~~ 579 (660)
..++++..+.|..
T Consensus 378 ~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 378 YVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHTTCCH
T ss_pred HHHHHHHHHCCCH
Confidence 9999999888753
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=5.6e-13 Score=126.43 Aligned_cols=197 Identities=8% Similarity=-0.079 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5678888999999999999999999876 3467889999999999999999999999999864 34677888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLA 532 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 532 (660)
...|++++|.++++.+.+ .+..| +...+..+..+|...|++++|.+.++++.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999976 23445 457888999999999999999999998653 45678899999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 533 EIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 533 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997753
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2e-13 Score=128.63 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=158.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
...+..+...+...|++++|...|+++. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 6677888889999999999999999875 3467889999999999999999999999999863 44677888888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|...++++.. +.+...+..+...+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999873 445678899999999999999999999998653 456789999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 534 IAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999997743
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=1.2e-12 Score=131.01 Aligned_cols=246 Identities=7% Similarity=-0.005 Sum_probs=197.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHhcccc-hHHHHHHHHHHHHhCccCCCCCCCCcc
Q 048281 301 IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPD-LVTFSTVLPACSHLAA-LMHGRQIHGYIVVNGLAKNGSCKDIDD 378 (660)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~ 378 (660)
...|+.+...+.+.|++++|+..+++..+. .|+ ...|..+..++...|+ +++|...++.++......
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--------- 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--------- 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---------
Confidence 346777788888888888888888888875 444 4566777777888886 888888888888877665
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
..+|..+..+|.+.|++++|+..|+++. ..+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 7889999999999999999999999876 4577899999999999999999999999999864 33567888888888
Q ss_pred hc-cCCHHHH-----HHHHHHhHHhcCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc
Q 048281 456 SH-SGFLSQG-----REFLPLMESRYGVVPTIEHYTCVIDMLGRAG--QLNEAYELALAMPN-EANPVVWRTLLAASRLH 526 (660)
Q Consensus 456 ~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~ 526 (660)
.. .|..++| +..++.+++. .+-+...|..+..+|...| ++++|.+.+.++.. +.+...+..++..|...
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 88 6665777 5888888762 3345678888999999888 68999999888733 34567888899999887
Q ss_pred C---------ChHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhC
Q 048281 527 G---------NTDLAEIAAQRV-FQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 527 g---------~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 560 (660)
| ..++|+.+++++ .+++|.....|..++..+...
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 4 258999999999 899999988888887766543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=5e-12 Score=121.50 Aligned_cols=189 Identities=10% Similarity=0.011 Sum_probs=132.9
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048281 381 MNNALMDMYTK----CGSMRDAQMVFTKMSK-KDVASWNIMILGYGM----DGQGKEALDMFSCMCEAKLKPDEVTFVGV 451 (660)
Q Consensus 381 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 451 (660)
.+..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 34445555555 5666666666655442 245566666666766 777777777777777754 55666666
Q ss_pred HHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048281 452 LSACSH----SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR----AGQLNEAYELALAMPNEANPVVWRTLLAAS 523 (660)
Q Consensus 452 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 523 (660)
...+.. .+++++|...++...+. + +...+..+...|.. .+++++|...+++.....++..+..+...|
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667776 77778888877777763 3 45566677777776 778888888877765555667777788888
Q ss_pred HH----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 048281 524 RL----HGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVA----GGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 524 ~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 578 (660)
.. .+++++|+..++++.+..| +..+..++.+|.. .+++++|.+.+++..+.|.
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88 8888888888888887755 5677788888887 8888888888888776553
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.3e-13 Score=128.28 Aligned_cols=178 Identities=13% Similarity=0.022 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
...+..+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444555556666666666666666544 2356677778888888888888888888888763 44667777788888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++.. +.+..+|..+..+|...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 8889999999999988773 345677888889999999999999999987643 456778999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHh
Q 048281 534 IAAQRVFQLEPGHCGNYVLMSNIYVA 559 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~~~l~~~~~~ 559 (660)
..+++++++.|+++..+..++.+...
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhh
Confidence 99999999999998877776655443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2e-12 Score=122.62 Aligned_cols=204 Identities=12% Similarity=-0.006 Sum_probs=148.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchh
Q 048281 301 IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVF 380 (660)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (660)
...|..+...+...|++++|...|+++.+.. +.+ ..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~-------------------------------------------~~ 72 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSS-------------------------------------------AD 72 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTC-------------------------------------------HH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCh-------------------------------------------HH
Confidence 4556677777777777777777777766542 112 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACS 456 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~ 456 (660)
++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|+..++++...+..| +...+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 44455555556666666666665543 2355667777777888888888888888877633344 3456677777888
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEI 534 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 534 (660)
..|++++|...++.+.+. .+.+...+..+...|...|++++|...++++.. +.+...+..+...+...|+.++|..
T Consensus 153 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 888888888888888763 334577888888999999999999999888643 4567788888899999999999999
Q ss_pred HHHHHHhcCCCCcchH
Q 048281 535 AAQRVFQLEPGHCGNY 550 (660)
Q Consensus 535 ~~~~~~~~~p~~~~~~ 550 (660)
.++++++..|+++...
T Consensus 231 ~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHCCCCHHHH
Confidence 9999999999886544
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=1.3e-12 Score=117.27 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=133.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI 488 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 488 (660)
+...|..+...|.+.|++++|+..|++.++.. +-+...+..+..++...|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 45677778888888888888888888887753 33556777777788888888888888888876 3444566777778
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH
Q 048281 489 DMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 566 (660)
..+...++++.|...+.+... +.+...+..+..++...|++++|+..|+++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888888888888888877543 456778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 048281 567 LDIRHTMRQQN 577 (660)
Q Consensus 567 ~~~~~~~~~~~ 577 (660)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999887643
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=8e-12 Score=120.06 Aligned_cols=226 Identities=11% Similarity=-0.065 Sum_probs=169.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHhCccCCCCCCCC
Q 048281 301 IFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSH----LAALMHGRQIHGYIVVNGLAKNGSCKDI 376 (660)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 376 (660)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+....+.+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~------ 73 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y------ 73 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C------
Confidence 344555555566666666666666666552 233344445555555 666666666666666554 2
Q ss_pred cchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHH
Q 048281 377 DDVFMNNALMDMYTK----CGSMRDAQMVFTKMSK-KDVASWNIMILGYGM----DGQGKEALDMFSCMCEAKLKPDEVT 447 (660)
Q Consensus 377 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 447 (660)
...+..+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...
T Consensus 74 --~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a 148 (273)
T 1ouv_A 74 --SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 148 (273)
T ss_dssp --HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred --HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHH
Confidence 5667777777777 8888888888877653 366788888888888 899999999999999865 5566
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 048281 448 FVGVLSACSH----SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR----AGQLNEAYELALAMPNEANPVVWRTL 519 (660)
Q Consensus 448 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l 519 (660)
+..+...+.. .+++++|...++...+. + +...+..+..+|.. .+++++|...+++.....+...+..+
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 224 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777 89999999999998873 3 46778889999999 99999999999987655567888889
Q ss_pred HHHHHH----cCChHHHHHHHHHHHhcCCCCc
Q 048281 520 LAASRL----HGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 520 ~~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
...|.. .+++++|...++++.++.|+++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999998 9999999999999999988653
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=4.5e-12 Score=117.65 Aligned_cols=173 Identities=12% Similarity=-0.034 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMD-GQGKEALDMFSCMCEAKLKPD-EVTFVGVLS 453 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 453 (660)
..++..+...|...|++++|.+.|+++. ..+..+|..+...+... |++++|+..++++.+.+..|+ ...+..+..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 4455556666666677777776666554 23566777888888888 888889888888887333343 466777778
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHHcCChH
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--E-ANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~ 530 (660)
++...|++++|...++.+.+. .+.+...+..+..+|.+.|++++|.+.++++.. + .+...+..+...+...|+.+
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 888899999999999988873 334577888899999999999999999987644 4 56777888888889999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHH
Q 048281 531 LAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
.|...++.+.+..|+++.....+
T Consensus 200 ~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 200 AAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999887655433
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=2.3e-12 Score=123.71 Aligned_cols=220 Identities=7% Similarity=-0.030 Sum_probs=164.5
Q ss_pred HhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HhHHHHHHHH
Q 048281 346 CSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK--KD----VASWNIMILG 419 (660)
Q Consensus 346 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~ 419 (660)
+...|+++.|...+..+.+..+.. ...+..+...|...|++++|...|++..+ ++ ..+|..+...
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNS---------PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCC---------STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344444444444444444433222 44556666677777777777777766543 12 2357888899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE 499 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 499 (660)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+ -.+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863 33557888899999999999999999999976 244456777778834445569999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhCCChHHH
Q 048281 500 AYELALAMPN--EANPVVWRTLLAASRLHGN---TDLAEIAAQRVFQLE---PGH-----CGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 500 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~a 566 (660)
|.+.++++.. +.+...+..+..++...|+ +++|...++++++.. |+. ...|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998654 4457788889999999998 889999999999874 442 25788899999999999999
Q ss_pred HHHHHHHHhCC
Q 048281 567 LDIRHTMRQQN 577 (660)
Q Consensus 567 ~~~~~~~~~~~ 577 (660)
.+.+++..+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998743
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=3.4e-12 Score=117.80 Aligned_cols=190 Identities=14% Similarity=0.022 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHH
Q 048281 304 WNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNN 383 (660)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (660)
+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+++..+.. ...+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------~~a~~ 77 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY---------LGGYM 77 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHH
Confidence 3334444444444444444444444321 1122333334444444444444444444444443322 44555
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 048281 384 ALMDMYTKC-----------GSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFV 449 (660)
Q Consensus 384 ~li~~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 449 (660)
.+..+|.+. |++++|...|++.. ..+...|..+..+|...|++++|+..|++..+.. .+...+.
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 555555555 66666666666554 2245566666666666666666666666666654 4555666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 048281 450 GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAM 507 (660)
Q Consensus 450 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 507 (660)
.+..++...|++++|...|+.+.+. .+.+...+..+..++.+.|++++|...+++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666552 2334455566666666666666666665543
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.3e-12 Score=130.84 Aligned_cols=226 Identities=8% Similarity=0.020 Sum_probs=193.8
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCC-HHHHHHHHhcCC---CCCHhH
Q 048281 337 VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGS-MRDAQMVFTKMS---KKDVAS 412 (660)
Q Consensus 337 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~ 412 (660)
..|..+...+...|+++.|...++.++...... ..+|+.+..++...|+ +++|+..|+++. ..+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 356666677888899999999999999987765 8899999999999997 999999999876 347789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG 492 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 492 (660)
|+.+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++.+++. -+-+...|+.+..+|.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999863 346678888999999999999999999999973 4456789999999999
Q ss_pred h-cCCHHHH-----HHHHHhCCC--CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC-
Q 048281 493 R-AGQLNEA-----YELALAMPN--EANPVVWRTLLAASRLHG--NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG- 561 (660)
Q Consensus 493 ~-~g~~~~A-----~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 561 (660)
+ .|..++| ++.+++... +.+...|..+...+...| ++++|+..++++ +.+|+++..+..++.+|.+.|
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 9 6665777 467776543 456789999999999888 689999999998 889999999999999999874
Q ss_pred --------ChHHHHHHHHHH-Hh
Q 048281 562 --------KYEEVLDIRHTM-RQ 575 (660)
Q Consensus 562 --------~~~~a~~~~~~~-~~ 575 (660)
.+++|+++++++ .+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 358999999998 55
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=8.4e-13 Score=135.36 Aligned_cols=265 Identities=12% Similarity=-0.005 Sum_probs=179.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhH
Q 048281 307 IMTVHEQCGNHDGTLRLFDRMLSAGFQPDL-----VTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFM 381 (660)
Q Consensus 307 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (660)
+...+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...++.+........ .......+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~ 128 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN---DRLGEAKS 128 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc---CchHHHHH
Confidence 4444555555555555555555542 221 2344444555555666666665555543310000 00001556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC---------CHhHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSKK---------DVASWNIMILGYGMDGQ-----------------GKEALDMFSC 435 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 435 (660)
+..+...|...|++++|...|++.... ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777777888888888888877765421 23467778888888888 8888888887
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 436 MCEA----KLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 436 m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
..+. +-.| ...++..+...+...|++++|...++++.+...-.++ ...+..+..+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6642 1111 2246777778888999999999999988763211122 23778889999999999999999887
Q ss_pred CCC----C----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 507 MPN----E----ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH------CGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 507 ~~~----~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
... . ....++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 543 1 124678889999999999999999999998874432 34788999999999999999999998
Q ss_pred HHhC
Q 048281 573 MRQQ 576 (660)
Q Consensus 573 ~~~~ 576 (660)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8663
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.5e-12 Score=133.03 Aligned_cols=197 Identities=11% Similarity=-0.002 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMDGQ--------------------GKEA 429 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 429 (660)
..++..+...|...|++++|...+++... ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44556666667777777777776665541 11 3366677777777777 7777
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 048281 430 LDMFSCMCEA----KLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEA 500 (660)
Q Consensus 430 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 500 (660)
+..+++.... +-.| ...++..+...+...|++++|...++++.+...-.++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777776542 1111 1235666677788888888888888887652211122 23677788888888888888
Q ss_pred HHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhCCChHHH
Q 048281 501 YELALAMPN----EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH------CGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 501 ~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 566 (660)
...+++... .++ ..++..+...|...|++++|...+++++++.+.. +..+..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888876532 111 4567778888888888888888888888764332 45677888888888888888
Q ss_pred HHHHHHHHh
Q 048281 567 LDIRHTMRQ 575 (660)
Q Consensus 567 ~~~~~~~~~ 575 (660)
.+.+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887754
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=2.4e-12 Score=127.59 Aligned_cols=264 Identities=11% Similarity=0.027 Sum_probs=175.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHH
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSAGFQPD-----LVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMN 382 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (660)
...+...|++++|...|+++.+.. |+ ...+..+...+...|+++.|...+........... ..+....++
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~ 86 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG---DQLGEAKAS 86 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---ccHHHHHHH
Confidence 344445555555555555554432 22 12344444445555555555555554433211000 000014566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMDGQ--------------------GKEALDMF 433 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 433 (660)
..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888887776541 22 3377778888888888 88888888
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHH
Q 048281 434 SCMCEA----KLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELA 504 (660)
Q Consensus 434 ~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 504 (660)
++.... +-.| ...++..+...+...|++++|...++++.+...-.++ ...+..+...|...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 1111 1346677777888999999999999988753111122 247888889999999999999998
Q ss_pred HhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhCCChHHHHHHH
Q 048281 505 LAMPN----EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH------CGNYVLMSNIYVAGGKYEEVLDIR 570 (660)
Q Consensus 505 ~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 570 (660)
++... .++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 87542 122 4577888899999999999999999998874432 347888999999999999999999
Q ss_pred HHHHhC
Q 048281 571 HTMRQQ 576 (660)
Q Consensus 571 ~~~~~~ 576 (660)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=6.4e-13 Score=138.31 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSM-RDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSA 454 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 454 (660)
...+..+...|...|++ ++|++.|++.. ..+...|..+..+|...|++++|+..|++..+. .|+...+..+...
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~ 179 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHH
Confidence 78899999999999999 99999999876 346789999999999999999999999999985 5788888889999
Q ss_pred Hhcc---------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhCCC-C----CC
Q 048281 455 CSHS---------GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA--------GQLNEAYELALAMPN-E----AN 512 (660)
Q Consensus 455 ~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~----~~ 512 (660)
+... |++++|...++++.+. .+.+...|..+..+|... |++++|.+.|++... . .+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 9999 9999999999999873 445678899999999999 999999999998654 3 47
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 513 PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
...|..+..+|...|++++|+..|+++++++|+++..+..++.++...|++++|.+.+.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999999976543
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=7.1e-10 Score=118.48 Aligned_cols=415 Identities=8% Similarity=0.002 Sum_probs=267.4
Q ss_pred CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCC---HHHHHHHHHHHHHhCC-CCChh
Q 048281 95 CEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMA---VLEVKKIHGLVFKLGL-DLDVY 170 (660)
Q Consensus 95 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~ 170 (660)
.+-|..+|..++..+.+.+.++.+..+|+++... .+.+...|..-+..-.+.++ ++.+.++|++.+...+ +|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3457888888888888888888888899888875 33345566677777777777 8888888888887642 36777
Q ss_pred HHHHHHHHhHhcCCh--------HHHHHHHccCC------CC-CchhHHHHHHHHH---------hCCChhHHHHHHHHH
Q 048281 171 IGSALVNTYLKCQFM--------EEALKVFEELP------LR-DVVLWNAMVNGYA---------QIGEFHKALEVFRRM 226 (660)
Q Consensus 171 ~~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~---------~~~~~~~A~~~~~~m 226 (660)
.|...+....+.++. +.+.++|+... .+ +...|...+.-.. .+++++.+.++|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 777777665554443 23345665421 22 3456777776543 234466777888877
Q ss_pred HHCCCCCC--hhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHh-------cC
Q 048281 227 SKEGIWMS--RFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEM-------ME 297 (660)
Q Consensus 227 ~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~-------~~ 297 (660)
+. ++.. ..+|..........+ ...+.+++.+. ...++.|...+.+ +.
T Consensus 221 L~--iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 221 LC--QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TT--SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCC
T ss_pred Hh--CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHh
Confidence 64 2211 122221111111111 11122221110 0122223333322 11
Q ss_pred C--------------C--C------hhhHHHHHHHHHHcC-------ChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 048281 298 E--------------K--D------IFSWNSIMTVHEQCG-------NHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSH 348 (660)
Q Consensus 298 ~--------------~--~------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (660)
+ | + ...|...+.---..+ ..+.+..+|++.... ++-+...|.....-+..
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGE 355 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHh
Confidence 0 0 0 123444444332222 123455677777765 23355566666666777
Q ss_pred ccchHHHH-HHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------------CC-----
Q 048281 349 LAALMHGR-QIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-------------KD----- 409 (660)
Q Consensus 349 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~----- 409 (660)
.|+.+.|. .+++..+...+. + ..++...+...-+.|+++.|.++|+++.. |+
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~-s--------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPN-S--------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTT-C--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCC-C--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 78888886 999988875443 2 67788888889999999999999988753 21
Q ss_pred -------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCC
Q 048281 410 -------VASWNIMILGYGMDGQGKEALDMFSCMCEA-KLKPDEVTFVGVLSACSH-SGFLSQGREFLPLMESRYGVVPT 480 (660)
Q Consensus 410 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~ 480 (660)
...|...+....+.|+.+.|..+|.++.+. + .+....|...+..-.+ .++.+.|..+|+...+. .+.+
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~ 503 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTC
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCc
Confidence 236888888888889999999999999886 2 2223344333322223 35699999999999985 4446
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN-EA----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
...+...++.....|+.+.|..+|++... .| ....|...+..-...|+.+.+.++.+++.+..|+++
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 66778899999999999999999999665 23 346899999999999999999999999999999875
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.2e-12 Score=131.89 Aligned_cols=170 Identities=11% Similarity=0.002 Sum_probs=127.4
Q ss_pred HHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC
Q 048281 395 MRDAQMVFTKMSK-----K----DVASWNIMILGYGMDGQGKEALDMFSCMCEAKL-KPD----EVTFVGVLSACSHSGF 460 (660)
Q Consensus 395 ~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~ 460 (660)
+++|.+.+++... . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 6666666654431 1 234788889999999999999999999875311 122 2367778888999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCC
Q 048281 461 LSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELALAMPN----EAN----PVVWRTLLAASRLHGN 528 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~ 528 (660)
+++|...++++.+...-.++ ..++..+...|...|++++|.+.+++... .++ ..++..+...|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999998752111112 46788899999999999999999987543 122 4578889999999999
Q ss_pred hHHHHHHHHHHHhcCC------CCcchHHHHHHHHHhCCChH
Q 048281 529 TDLAEIAAQRVFQLEP------GHCGNYVLMSNIYVAGGKYE 564 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 564 (660)
+++|...+++++++.+ ....++..++.++...|+..
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999999999988732 23456778888888887654
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=5.9e-12 Score=112.88 Aligned_cols=166 Identities=12% Similarity=-0.005 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
+.+|..+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|+..+.+..... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 7899999999999999999999999876 3477899999999999999999999999998863 34556677777888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
...++++.|...+..+.+ ..+.+...+..+..+|.+.|++++|++.|++... +.+..+|..+..+|...|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 3455678899999999999999999999998654 557789999999999999999999
Q ss_pred HHHHHHHhcCCCCc
Q 048281 534 IAAQRVFQLEPGHC 547 (660)
Q Consensus 534 ~~~~~~~~~~p~~~ 547 (660)
..|+++++++|+++
T Consensus 162 ~~~~~al~~~p~~a 175 (184)
T 3vtx_A 162 KYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHTTHHHH
T ss_pred HHHHHHHhCCccCH
Confidence 99999999999764
No 64
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=5.9e-12 Score=120.97 Aligned_cols=237 Identities=8% Similarity=-0.112 Sum_probs=163.5
Q ss_pred CCCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHH
Q 048281 283 GKCVGEALEIFEMMEEK-------DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHG 355 (660)
Q Consensus 283 ~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 355 (660)
.|++++|+..|+++.+. +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|+++.|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45666666666665542 33456677777777777777777777777653 23456677777777777888888
Q ss_pred HHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 048281 356 RQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS--KKDVASWNIMILGYGMDGQGKEALDMF 433 (660)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 433 (660)
...++.++...... ..++..+...|.+.|++++|...|+++. .|+...+...+..+...|++++|+..+
T Consensus 97 ~~~~~~al~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 97 YEAFDSVLELDPTY---------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHCTTC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhcCccc---------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 88877777765433 6777888888888888888888888775 333333334444556678999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 434 SCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-----IEHYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 434 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
++..... +++...+. ++..+...++.++|...+..+.+ ..|+ ...+..+...|.+.|++++|...++++.
T Consensus 168 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8887753 34444443 66677777888899988888754 2222 5778889999999999999999998865
Q ss_pred C-CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 509 N-EANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 509 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
. .|+. +.....++...|++++|++.+
T Consensus 243 ~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4 3322 344466777788888887776
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=4e-09 Score=112.70 Aligned_cols=419 Identities=8% Similarity=-0.043 Sum_probs=201.2
Q ss_pred CCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCC---hhHHHHHHccCC-C---CCCcc
Q 048281 28 HPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQ---MKYALFVFNNLS-C---EPNVF 100 (660)
Q Consensus 28 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~-~---~~~~~ 100 (660)
.|.+..+|..++..+...+.+..+..+|+.++.. .+.+...|...+..-.+.|+ ++.+..+|++.. . .|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 3556667777777777777777777777777766 34455667777777667676 777777777521 1 26666
Q ss_pred cHHHHHHHHHcCCCh--------hHHHHHHHHHHH-CCC-CCCc-ccHHHHHHHHh---------hhCCHHHHHHHHHHH
Q 048281 101 TYNAMISGFYSNDFA--------FKGLDFFNHMRQ-LGV-LPDK-YTFPCLIKCCC---------DVMAVLEVKKIHGLV 160 (660)
Q Consensus 101 ~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~ 160 (660)
.|...+.-..+.++. +...++|+.... .|. .|+. ..|...+.... ..++++.+..+|+.+
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 676666554443332 223356655443 344 4433 34544444332 233456666777666
Q ss_pred HHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHH--CCCC------
Q 048281 161 FKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSK--EGIW------ 232 (660)
Q Consensus 161 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~------ 232 (660)
+......-..+|......--..+.. .+.+++.+ ....++.|...+.++.. .++.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQL-TARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTT-THHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 6421111112222111110000000 00000000 00111222222222111 0000
Q ss_pred ---------C-----Ch---hhHHHHHHHHHccC-------CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHH
Q 048281 233 ---------M-----SR---FTVTGVLSALIMMG-------FFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGE 288 (660)
Q Consensus 233 ---------p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 288 (660)
| +. ..|...+.---..+ ..+.+..+|+.++..- +-...+|-..+..+.+.|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHH
Confidence 0 00 11222222111111 0112233444444432 2244455555555555555555
Q ss_pred HH-HHHHhcCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC---------CCC------------HHHHHHHH
Q 048281 289 AL-EIFEMMEE--K-DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGF---------QPD------------LVTFSTVL 343 (660)
Q Consensus 289 A~-~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~p~------------~~t~~~ll 343 (660)
|. ++|+.... | +...|-..+...-+.|++++|.++|+.+.+... .|+ ...|...+
T Consensus 362 a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 54 55554432 1 333344455555555566666666655554210 121 12455555
Q ss_pred HHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcC-CHHHHHHHHhcCC---CCCHhHHHHHHHH
Q 048281 344 PACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCG-SMRDAQMVFTKMS---KKDVASWNIMILG 419 (660)
Q Consensus 344 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~ 419 (660)
....+.|+.+.|+.++..+.+...... ..+|...+..-.+.+ +.+.|.++|+... ..+...|...+..
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~--------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVT--------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSC--------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 555566677777777777766511111 333433333333433 3677777777655 2355566666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKP--DEVTFVGVLSACSHSGFLSQGREFLPLMESR 474 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 474 (660)
....|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+..+.+.+.+.
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666677777777777776653211 2245666666666667777777777777663
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=6.9e-12 Score=128.48 Aligned_cols=205 Identities=10% Similarity=-0.029 Sum_probs=145.3
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCC-----------------HHHHHH
Q 048281 338 TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGS-----------------MRDAQM 400 (660)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 400 (660)
.+..+...+...|+++.|...+..+........ .......++..+...|...|+ +++|.+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG---DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 344444445555555555555554443311000 000015577888888999999 888888
Q ss_pred HHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHH
Q 048281 401 VFTKMSK-----K----DVASWNIMILGYGMDGQGKEALDMFSCMCEAKL-KPD----EVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 401 ~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
.+++..+ . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 8876542 1 234788889999999999999999999876421 112 2367788889999999999999
Q ss_pred HHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHH
Q 048281 467 FLPLMESRYGVVP----TIEHYTCVIDMLGRAGQLNEAYELALAMPN----EAN----PVVWRTLLAASRLHGNTDLAEI 534 (660)
Q Consensus 467 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~ 534 (660)
.++++.+...-.. ...++..+..+|...|++++|...+++... .++ ..++..+..+|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9998876321111 146788899999999999999999987643 112 3478888999999999999999
Q ss_pred HHHHHHhcCCC
Q 048281 535 AAQRVFQLEPG 545 (660)
Q Consensus 535 ~~~~~~~~~p~ 545 (660)
.+++++++.+.
T Consensus 365 ~~~~al~~~~~ 375 (411)
T 4a1s_A 365 YAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHHHhh
Confidence 99999998653
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.3e-11 Score=133.63 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=130.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI 488 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 488 (660)
..+|+.|...|.+.|++++|+..|++.++. .| +...+..+..++.+.|++++|++.|+++++. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456777777888888888888888888774 44 3567777778888888888888888888762 233467788888
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH
Q 048281 489 DMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV 566 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 566 (660)
.+|.+.|++++|++.|++... +.+...|..+..+|...|++++|+..|+++++++|+++..+..++.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888887543 456778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048281 567 LDIRHTMRQ 575 (660)
Q Consensus 567 ~~~~~~~~~ 575 (660)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887643
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=1.6e-10 Score=117.12 Aligned_cols=164 Identities=11% Similarity=0.031 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCC
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMDGQGKEALDMFSCMCEA----KL-KPD 444 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~ 444 (660)
..+++.+...|...|++++|...|++..+ ++ ..++..+..+|...|++++|+..+++..+. +. +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 34566677777777777777777765541 11 136677777788888888888888777762 22 223
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRY---GVVPTIEHYTCVIDMLGRAGQ---LNEAYELALAMPNEAN-PVVWR 517 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~ 517 (660)
..++..+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++....++ ...+.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 343 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4566667777777888888888777766521 111112334556666777777 6677777766643222 23455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
.+...|...|++++|...+++++++
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5666666666666666666666654
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=2.4e-11 Score=120.37 Aligned_cols=151 Identities=11% Similarity=-0.011 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC
Q 048281 395 MRDAQMVFTKMSK-----K----DVASWNIMILGYGMDGQGKEALDMFSCMCEAKL-KPD----EVTFVGVLSACSHSGF 460 (660)
Q Consensus 395 ~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~ 460 (660)
+++|.+.+++... + ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 6666666654421 1 234778888999999999999999999875311 111 2367778888999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCC
Q 048281 461 LSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELALAMPN----EAN----PVVWRTLLAASRLHGN 528 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~ 528 (660)
+++|...+++..+...-.++ ..++..+...|...|++++|...+++... .++ ..++..+...|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999988753111112 46788899999999999999999987643 112 3477889999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 048281 529 TDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~ 545 (660)
+++|...+++++++.+.
T Consensus 319 ~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999998654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=1.9e-10 Score=112.48 Aligned_cols=218 Identities=11% Similarity=0.008 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHh-------cccch-------HHHHHHHHHHHHh-CccCCCCCCCCcchhHH
Q 048281 318 DGTLRLFDRMLSAGFQPDLVTFSTVLPACS-------HLAAL-------MHGRQIHGYIVVN-GLAKNGSCKDIDDVFMN 382 (660)
Q Consensus 318 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 382 (660)
++|..+|++..... +-+...|......+. ..|++ ++|..+++..+.. .+.. ..+|
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------MLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------HHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------HHHH
Confidence 56777777777641 223345555554443 34665 8888888888873 4332 7789
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hc
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSK--K-DVA-SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC-SH 457 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~ 457 (660)
..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ..
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998763 3 344 89999999999999999999999999864 33444554433332 23
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHHcCChHH
Q 048281 458 SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN----EA--NPVVWRTLLAASRLHGNTDL 531 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~ 531 (660)
.|+.++|..+|+.+.+. .+.+...|..++..+.+.|++++|..+|++... +| ....|..++......|+.+.
T Consensus 182 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp SCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 69999999999999874 334678889999999999999999999988644 33 45689999999999999999
Q ss_pred HHHHHHHHHhcCCCCcc
Q 048281 532 AEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~~ 548 (660)
|..+++++++..|+++.
T Consensus 260 a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 260 ILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHcccccc
Confidence 99999999999998654
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=3.5e-11 Score=107.66 Aligned_cols=162 Identities=14% Similarity=-0.002 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555666666666666666665542 234455555555555555555555555555431 22333444444444
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIA 535 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 535 (660)
...|++++|.+.++.+.+. . +.+...+..+...+...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 4444444444444444431 1 23455666666666667777777777
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 536 AQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 536 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
++++++..|+++..+..++.++...|++++|.+.++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777776666777777777777777777777776654
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=4e-11 Score=111.63 Aligned_cols=187 Identities=11% Similarity=-0.049 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---K-KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLS 453 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 453 (660)
+..+......|.+.|++++|...|++.. . ++...+..+..++...|++++|+..|++..+. .| +...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 4555556666666666666666666543 2 44455555556666666666666666666553 23 2344555555
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHHH
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPTI-------EHYTCVIDMLGRAGQLNEAYELALAMPN-EAN---PVVWRTLLAA 522 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~ 522 (660)
++...|++++|...++++.+. .+.+. ..|..+...+...|++++|.+.|++... .|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 566666666666666666542 12222 3355555555555666666665555433 222 3344445544
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|... +...++++..+.+.++..|.. ......+.+++|...+++..+.
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 4332 233344444444443333222 2223344458898888888764
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.3e-10 Score=113.63 Aligned_cols=212 Identities=7% Similarity=-0.012 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHh-------cCCH-------HHHHHHHhcCCC---C-CHhHHH
Q 048281 353 MHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTK-------CGSM-------RDAQMVFTKMSK---K-DVASWN 414 (660)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~ 414 (660)
+.|..+++.++...+.. +.+|..++..+.. .|++ ++|..+|++..+ | +...|.
T Consensus 33 ~~a~~~~~~al~~~p~~---------~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH---------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHH
Confidence 56777888887765444 7788888887763 5886 899999998653 3 567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 048281 415 IMILGYGMDGQGKEALDMFSCMCEAKLKPDE-V-TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLG 492 (660)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 492 (660)
.++..+.+.|++++|..+|+++++. .|+. . .|..+...+.+.|++++|..+|+.+.+. .+++...|...+....
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 9999999999999999999999984 5653 3 7888899999999999999999999872 3345566655544432
Q ss_pred -hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhCCChHH
Q 048281 493 -RAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL---EPG-HCGNYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 493 -~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~ 565 (660)
..|+.++|..+|++... +.+...|..++..+...|+.++|..+|+++++. .|+ ....|..++..+.+.|++++
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 37999999999998754 457889999999999999999999999999995 443 56688889999999999999
Q ss_pred HHHHHHHHHhCC
Q 048281 566 VLDIRHTMRQQN 577 (660)
Q Consensus 566 a~~~~~~~~~~~ 577 (660)
|..+++++.+..
T Consensus 260 a~~~~~~a~~~~ 271 (308)
T 2ond_A 260 ILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999997754
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=2.2e-11 Score=123.38 Aligned_cols=228 Identities=6% Similarity=-0.054 Sum_probs=168.3
Q ss_pred HHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----CHhHH
Q 048281 344 PACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-----K-----DVASW 413 (660)
Q Consensus 344 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~ 413 (660)
..+...|+++.|...+......-.... .+.....++..+...|...|+++.|...+++..+ + ...++
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVK---DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 345566777777777776655411110 0000157888999999999999999988887641 1 13578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC-CCChHHH
Q 048281 414 NIMILGYGMDGQGKEALDMFSCMCEAKLK-PD----EVTFVGVLSACSHSGFLSQGREFLPLMESRY---GV-VPTIEHY 484 (660)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~ 484 (660)
+.+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+-. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88999999999999999999998864111 12 2477788889999999999999999987611 23 3345778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCC----CCCH---HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCcchHHHHH
Q 048281 485 TCVIDMLGRAGQLNEAYELALAMPN----EANP---VVWRTLLAASRLHGN---TDLAEIAAQRVFQLEPGHCGNYVLMS 554 (660)
Q Consensus 485 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~ 554 (660)
..+..+|.+.|++++|...+++... .+++ ..+..+...+...|+ .++|+..+++. ...|.....+..++
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 9999999999999999999987543 1122 235667778888888 77777777775 33444456788999
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 048281 555 NIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 555 ~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998854
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=6.7e-12 Score=122.97 Aligned_cols=197 Identities=15% Similarity=0.100 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK-------K----DVASWNIMILGYGMDGQGKEALDMFSCMCEA------KL 441 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 441 (660)
..++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..++++.+. +-
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 56778899999999999999999987652 1 3457888999999999999999999998864 22
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----
Q 048281 442 KP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRY-----G-VVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN----- 509 (660)
Q Consensus 442 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 509 (660)
.| ....+..+...+...|++++|.++++.+.+.. + .+.....+..+..+|...|++++|.+.++++..
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 23 33567778888999999999999999987631 1 222346788899999999999999999987642
Q ss_pred -----CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 510 -----EA-------NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 510 -----~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+ ....+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01 1122333334455666777888888888888888889999999999999999999999998865
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.6e-10 Score=103.21 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=105.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048281 378 DVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSA 454 (660)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 454 (660)
+..++..+...|...|++++|...++++. ..+...|..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 119 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVA 119 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHH
Confidence 47788999999999999999999999875 3467889999999999999999999999999863 4456677777777
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEI 534 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 534 (660)
+...|++++|..+++.+.+. . +.+...+..+...+...|++++|..
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGL--R--------------------------------PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhc--C--------------------------------ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888877652 1 1234455666666666777777777
Q ss_pred HHHHHHhcCCCCcc
Q 048281 535 AAQRVFQLEPGHCG 548 (660)
Q Consensus 535 ~~~~~~~~~p~~~~ 548 (660)
.++++++..|+++.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 166 HFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHCCCG
T ss_pred HHHHHHHcCCCchh
Confidence 77777776666543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=1.9e-10 Score=106.96 Aligned_cols=153 Identities=9% Similarity=-0.023 Sum_probs=120.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVI 488 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 488 (660)
|+..|......+...|++++|+..|++..+....++...+..+..++...|++++|+..++.+.+ ..+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 55677778888888888888888888888865336777777777788888888888888888876 2333567788888
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHH
Q 048281 489 DMLGRAGQLNEAYELALAMPN--EANP-------VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG--HCGNYVLMSNIY 557 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~--~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~ 557 (660)
.+|...|++++|...+++... +.+. ..|..+...+...|++++|+..++++++++|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 888888888888888887543 3344 45777778888888888888888888888888 788888888888
Q ss_pred HhCCCh
Q 048281 558 VAGGKY 563 (660)
Q Consensus 558 ~~~g~~ 563 (660)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877765
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.1e-10 Score=121.55 Aligned_cols=178 Identities=8% Similarity=-0.047 Sum_probs=156.5
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 048281 395 MRDAQMVFTKMS---KKDVASWNIMILGYGMDGQG-KEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPL 470 (660)
Q Consensus 395 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 470 (660)
++++...++... ..+...|..+...|...|++ ++|+..|++..+.. +-+...|..+..++...|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556665443 34678899999999999999 99999999999863 33577899999999999999999999999
Q ss_pred hHHhcCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc--------CChHH
Q 048281 471 MESRYGVVPTIEHYTCVIDMLGRA---------GQLNEAYELALAMPN--EANPVVWRTLLAASRLH--------GNTDL 531 (660)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--------g~~~~ 531 (660)
+.+ ..|+...+..+..+|... |++++|.+.+++... +.+...|..+..+|... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 975 457788999999999999 999999999998654 45688999999999999 99999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 532 AEIAAQRVFQLEP---GHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 532 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|+..|+++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999998774
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=4.5e-09 Score=105.90 Aligned_cols=266 Identities=14% Similarity=0.018 Sum_probs=178.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCCHH----HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHH
Q 048281 308 MTVHEQCGNHDGTLRLFDRMLSAGFQPDLV----TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNN 383 (660)
Q Consensus 308 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (660)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+............ ......++.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~ 97 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---WHYALWSLI 97 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---HHHHHHHHH
Confidence 334455666666666666655543111211 2334444555667777777776666543222110 000023456
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHH
Q 048281 384 ALMDMYTKCGSMRDAQMVFTKMSK----------K-DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLK--P--DEVTF 448 (660)
Q Consensus 384 ~li~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~ 448 (660)
.+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 778888999999999988887541 1 1245667888899999999999999998864321 1 23467
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhCCCC-CC-----HHHHH
Q 048281 449 VGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYT-----CVIDMLGRAGQLNEAYELALAMPNE-AN-----PVVWR 517 (660)
Q Consensus 449 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~ 517 (660)
..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.... +. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7777888999999999999999876312111111222 2345578999999999999987642 11 23567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPGH------CGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.+...+...|++++|...++++++..+.. ...+..++.++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 78889999999999999999998763321 236777899999999999999999987553
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.7e-11 Score=120.10 Aligned_cols=242 Identities=13% Similarity=0.057 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCC
Q 048281 303 SWNSIMTVHEQCGNHDGTLRLFDRMLSA-------GFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKD 375 (660)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (660)
++..+...+...|++++|..+|+++.+. ........+..+...+...|+++.|...+..+........+ ...
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-KDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 3444555555555555555555554431 11112234455555556666666666666655543100000 000
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 048281 376 IDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-------K----DVASWNIMILGYGMDGQGKEALDMFSCMCEA----- 439 (660)
Q Consensus 376 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 439 (660)
+....++..+...|...|++++|...|++..+ + ....+..+...+...|++++|+..++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 01167788899999999999999999987652 1 2457888999999999999999999999874
Q ss_pred -CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCCCC-------hHHHHHHHHHHhhcCCHHHHHHHH
Q 048281 440 -KLKPD-EVTFVGVLSACSHSGFLSQGREFLPLMESRY------GVVPT-------IEHYTCVIDMLGRAGQLNEAYELA 504 (660)
Q Consensus 440 -g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~ 504 (660)
+-.|+ ..++..+...+...|++++|...++++.+.. ...+. ...+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 22332 3467778889999999999999999988621 11111 122233333444555566666666
Q ss_pred HhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 505 LAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 505 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
+.... +....+|..+..+|...|++++|...+++++++.|.
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66543 234568899999999999999999999999998764
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=2.4e-09 Score=108.05 Aligned_cols=164 Identities=10% Similarity=0.019 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMDGQGKEALDMFSCMCEA----KLKPDE 445 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~ 445 (660)
..+++.+...|...|++++|.+.|++..+ ++ ..+++.+..+|...|++++|+..+++..+. +-+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 45566777777777777777777765441 11 246677778888888888888888887761 212235
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGV---VPTIEHYTCVIDMLGRAGQ---LNEAYELALAMPNEAN-PVVWRT 518 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~ 518 (660)
.++..+...+.+.|++++|...+++..+...- +.....+..+...|...|+ +++|+..+++....++ ...+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 56677777888888888888888887763211 1123445666666777777 7777777777543222 234556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
+...|...|++++|...++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 666677777777777777766553
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.21 E-value=3.3e-10 Score=114.46 Aligned_cols=226 Identities=9% Similarity=-0.029 Sum_probs=162.7
Q ss_pred HhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----CHhHHHH
Q 048281 346 CSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-----K-----DVASWNI 415 (660)
Q Consensus 346 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~ 415 (660)
+...|+++.|...+..+........ .+.....++..+...|...|+++.|...+++... + ...+++.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVS---DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4556677777777766654422111 0011156788889999999999998888876541 1 1357888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCChHHHHHH
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEA----KLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRY---GVVPTIEHYTCV 487 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l 487 (660)
+...|...|++++|++.|++..+. +-.+ ...++..+..++...|++++|...+++..+-. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 999999999999999999998763 1111 13467778889999999999999999987611 223336788899
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048281 488 IDMLGRAGQLNEAYELALAMPN------EAN-PVVWRTLLAASRLHGN---TDLAEIAAQRVFQLEPGHCGNYVLMSNIY 557 (660)
Q Consensus 488 ~~~~~~~g~~~~A~~~~~~~~~------~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 557 (660)
..+|.+.|++++|...+++... .+. ...+..+...+...++ .++|+..+++. ...|.....+..++.+|
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHH
Confidence 9999999999999999987532 122 3345566666777777 77777777762 22334456778899999
Q ss_pred HhCCChHHHHHHHHHHHh
Q 048281 558 VAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 558 ~~~g~~~~a~~~~~~~~~ 575 (660)
...|++++|...+++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999998754
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=4e-10 Score=121.98 Aligned_cols=164 Identities=10% Similarity=0.032 Sum_probs=145.5
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 048281 377 DDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVL 452 (660)
Q Consensus 377 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 452 (660)
.+...++.|...|.+.|++++|++.|++.. ..+..+|+.+..+|.+.|++++|+..|++.++. .| +...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 347889999999999999999999999876 346789999999999999999999999999985 45 467899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 048281 453 SACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTD 530 (660)
Q Consensus 453 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 530 (660)
.++...|++++|++.|+++++. -+-+...|..+..+|...|++++|++.|++... +.+...|..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999872 334578999999999999999999999998654 456789999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 048281 531 LAEIAAQRVFQLEP 544 (660)
Q Consensus 531 ~A~~~~~~~~~~~p 544 (660)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999988644
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=2.4e-09 Score=101.83 Aligned_cols=205 Identities=12% Similarity=0.017 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--K-D---VASWNIMILGYGMDGQGKEALDMFSCMCEAKL-KPD-EVTFVG 450 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~ 450 (660)
...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 55556666667777777777777776652 2 2 44566666677777777777777777766421 111 234444
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048281 451 VLSACSH--------SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAA 522 (660)
Q Consensus 451 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 522 (660)
+..++.. .|++++|...|+.+.+.. +.+......+.......+++ ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 5555555 667777777777766531 11222222211111111000 1124677889
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCccCCcEEEEEE
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGH---CGNYVLMSNIYVAG----------GKYEEVLDIRHTMRQQNVRKNPGCSWIEL 589 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 589 (660)
|...|++++|+..|+++++..|++ +..+..++.+|... |++++|...++++.+..
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~------------ 225 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF------------ 225 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC------------
Confidence 999999999999999999999985 45788999999877 99999999999987742
Q ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc
Q 048281 590 KDGLHTFISSDRSHPEAKSIYAELHSLTARLREH 623 (660)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 623 (660)
+.+|........+..+...+.+.
T Consensus 226 -----------p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 -----------PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -----------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCChHHHHHHHHHHHHHHHHHHh
Confidence 24666677777777776666553
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=1.5e-09 Score=118.11 Aligned_cols=169 Identities=9% Similarity=-0.090 Sum_probs=143.6
Q ss_pred HhcCCHHHHHHHHhcCC-----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 390 TKCGSMRDAQMVFTKMS-----------KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 390 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
...|++++|++.|++.. ..+...|..+...|.+.|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999998875 3466788999999999999999999999999853 33567888888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAA 536 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 536 (660)
|++++|...|+++.+. .+.+...+..+..+|.+.|++++ .+.|++... +.+...|..+..++...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999873 33456888999999999999999 999988653 456789999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 537 QRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 537 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
+++++++|+++.++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877666
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=7.1e-08 Score=97.02 Aligned_cols=262 Identities=11% Similarity=-0.035 Sum_probs=150.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHHccCCchhHHHHHHHHHHhCCC-CC----chHHHHHHH
Q 048281 208 NGYAQIGEFHKALEVFRRMSKEGIWMSRF----TVTGVLSALIMMGFFKNGRVVHGIVVKMGYD-SG----VPVMNALID 278 (660)
Q Consensus 208 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 278 (660)
..+...|++++|...+++........+.. .+..+...+...|+++.|...+....+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655533211111 2334444555566666666666655443211 11 123455667
Q ss_pred HHHcCCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--C--CHHHHHHHH
Q 048281 279 MYGKGKCVGEALEIFEMMEE-------K----DIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQ--P--DLVTFSTVL 343 (660)
Q Consensus 279 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~t~~~ll 343 (660)
.+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+.... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77777888777777766532 1 1234566777788888888888888887654221 1 224566667
Q ss_pred HHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHH--HHHHHHHHhcCCHHHHHHHHhcCCCCC-------HhHHH
Q 048281 344 PACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMN--NALMDMYTKCGSMRDAQMVFTKMSKKD-------VASWN 414 (660)
Q Consensus 344 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~ 414 (660)
..+...|+++.|...++........... ....... ...+..+...|+.++|...+++...+. ...+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKY----HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCc----chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788889999999888887665322210 0001111 123345778888888888888776432 12455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 415 IMILGYGMDGQGKEALDMFSCMCEA----KLKPDE-VTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 415 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
.+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6667777777777777777776542 111111 1333444455566666666666665543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.3e-09 Score=104.81 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=145.0
Q ss_pred hcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C----CHhHHHH
Q 048281 347 SHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-------K----DVASWNI 415 (660)
Q Consensus 347 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~ 415 (660)
...|+++.|...++..+..-....+. ..+....++..+...|...|++++|...|++... + ...+|..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45678888888888876653222110 1122356777888888888888888888876541 1 2346777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----C-CCCChH
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEA------KLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRY-----G-VVPTIE 482 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~ 482 (660)
+...|...|++++|+..++++... .-.| ...++..+...+...|++++|..+++++.+.. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888888888888888888887764 1112 24566777778888888888888888877620 1 122345
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC----------C-CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhcCCC
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN----------E-ANPVVWRTLLAASRLHGNT------DLAEIAAQRVFQLEPG 545 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~p~ 545 (660)
++..+..+|.+.|++++|...++++.. . .....|..+...+...+.. ..+...++......|.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 677788888888888888888876532 1 1222344333333333322 2222222222222344
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 546 HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+..+..++.+|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556888999999999999999999998765
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=2.4e-10 Score=98.21 Aligned_cols=141 Identities=8% Similarity=-0.059 Sum_probs=101.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC
Q 048281 418 LGYGMDGQGKEALDMFSCMCEAKLKPD-EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ 496 (660)
Q Consensus 418 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 496 (660)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++++. -+-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3444556677777777766542 232 234455666777777777777777777762 33456777888888888888
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 497 LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIA-AQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 497 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
+++|...|++... +.++.+|..+...|...|++++|... ++++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888877543 44677889999999999998776654 589999999999999999999888875
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=3.8e-09 Score=88.46 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=71.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC
Q 048281 451 VLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGN 528 (660)
Q Consensus 451 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 528 (660)
+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++.. +.+...|..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 333444444444444444444431 122334444445555555555555555544322 2344556666666777777
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 529 TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+++|...++++++..|.++..+..++.++...|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777777777654
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=1.7e-08 Score=93.39 Aligned_cols=181 Identities=8% Similarity=-0.079 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--KD----VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEV----TF 448 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 448 (660)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 45566667778888888888888887652 32 246677778888888888888888888775 33321 33
Q ss_pred HHHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 048281 449 VGVLSACSH------------------SGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNE 510 (660)
Q Consensus 449 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 510 (660)
..+..++.. .|+.++|...|+.+++. .+-+...+.+......-.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH-------------
Confidence 333334432 34556666666665542 111222221111100000000
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 511 ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC---GNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 511 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
......+...+...|++++|+..|+++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123466788999999999999999999999876 5788999999999999999999999987654
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=2.7e-09 Score=103.25 Aligned_cols=194 Identities=9% Similarity=-0.006 Sum_probs=140.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHH
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMDGQGKEALDMFSCMCEAKLK-PD----EVT 447 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~ 447 (660)
|......|...|++++|...|.+... .+ ..+|+.+..+|...|++++|+..+++..+.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445677889999999988886642 11 468899999999999999999999998863211 11 347
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---CH-----
Q 048281 448 FVGVLSACSHS-GFLSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELALAMPN-EA---NP----- 513 (660)
Q Consensus 448 ~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~----- 513 (660)
+..+...|... |++++|+..|++..+-..-..+ ..++..+...|.+.|++++|+..|++... .| ..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 78888899996 9999999999998863111111 35688899999999999999999988543 12 21
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hCCChHHHHHHHHHHHh
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN-----YVLMSNIYV--AGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~~~~ 575 (660)
..|..+..++...|++++|+..++++++++|+.... +..++..+. ..+++++|+..++++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 157788889999999999999999999999976543 344556664 45678888888766543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=5.1e-09 Score=99.54 Aligned_cols=166 Identities=10% Similarity=-0.026 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----CHhHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCC
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--K----DVASWNIMILGYGM--------DGQGKEALDMFSCMCEAKLKPD 444 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~ 444 (660)
...+..+..+|.+.|++++|...|++..+ | ...++..+..++.. .|++++|+..|+++++. .|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcC
Confidence 56788899999999999999999998763 3 23467788888888 99999999999999986 454
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----HHHHHH
Q 048281 445 EV-TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN----PVVWRT 518 (660)
Q Consensus 445 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~ 518 (660)
.. .... ...+..+... -...+..+...|.+.|++++|...|+++.. .|+ ...+..
T Consensus 130 ~~~~~~a--------------~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 130 HELVDDA--------------TQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp CTTHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred chhHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 32 2211 1111111110 112356678888899999999999887643 232 456777
Q ss_pred HHHHHHHc----------CChHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhCCChHH
Q 048281 519 LLAASRLH----------GNTDLAEIAAQRVFQLEPGHCG---NYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 519 l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~ 565 (660)
+..+|... |++++|+..++++++..|+++. +...+..++.+.+++++
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 88888766 8899999999999999999864 34445555555544443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=8.6e-09 Score=86.21 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDML 491 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 491 (660)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56677788888888888888888888753 345667777778888888999999988888763 344567788888888
Q ss_pred hhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 492 GRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 492 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
...|++++|.+.++++.. +.+...+..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 899999999988887643 346778888899999999999999999999988875
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=5.7e-09 Score=100.97 Aligned_cols=214 Identities=8% Similarity=-0.082 Sum_probs=134.1
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 048281 285 CVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVV 364 (660)
Q Consensus 285 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 364 (660)
++++|...|++. ...|...|++++|...|.+..+... +.|+...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~---------------~~~~~~~~--------- 76 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQK---------------KAGNEDEA--------- 76 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHH---------------HTTCHHHH---------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHH---------------HhCCHHHH---------
Confidence 477887776653 6677788888888888877654210 00000000
Q ss_pred hCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHH
Q 048281 365 NGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMD-GQGKEALDMFS 434 (660)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~ 434 (660)
..+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|+
T Consensus 77 --------------a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 77 --------------GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 33445555555555555555555554431 11 24677788888885 88888888888
Q ss_pred HHHHcCCCC-C----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CCh-----HHHHHHHHHHhhcCCHHHHHHH
Q 048281 435 CMCEAKLKP-D----EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVV-PTI-----EHYTCVIDMLGRAGQLNEAYEL 503 (660)
Q Consensus 435 ~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~ 503 (660)
+..+..... + ..++..+...+...|++++|+..|+.+.+. ... +.. ..|..+..++...|++++|...
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 887631110 1 345777788888889999999999888763 222 221 1567778888888999999999
Q ss_pred HHhCCC-CCCH------HHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCcc
Q 048281 504 ALAMPN-EANP------VVWRTLLAASR--LHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 504 ~~~~~~-~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
+++... .|+. ..+..++.++. ..+++++|+..|+++.+++|....
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 888654 2321 12344555554 345688888888887777775533
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=6.6e-08 Score=91.57 Aligned_cols=163 Identities=6% Similarity=-0.051 Sum_probs=87.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-----ChH
Q 048281 409 DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVP-----TIE 482 (660)
Q Consensus 409 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~ 482 (660)
+..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+ ..| +..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchH
Confidence 33444455556666666666666666655443211 334445555566666666666666666644 233 233
Q ss_pred HHHHHHHH--HhhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCCc
Q 048281 483 HYTCVIDM--LGRAG--QLNEAYELALAMPNE-ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL----------EPGHC 547 (660)
Q Consensus 483 ~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~ 547 (660)
+...|+.+ ....| +.++|..+|+++... |+..+-..++.++.+.|++++|+..++.+.+. +|+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 34444433 22223 666666666665442 33222233333566666666666666665554 36666
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 548 GNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.++..++.+....|+ +|.++++++.+.
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 666566555555665 666666666553
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=4.5e-08 Score=89.52 Aligned_cols=172 Identities=9% Similarity=-0.043 Sum_probs=144.4
Q ss_pred HHHHHhcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 048281 398 AQMVFTKMS-KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSG----FLSQGREFLPLME 472 (660)
Q Consensus 398 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 472 (660)
|.+.|++.. ..+..++..+...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444454443 3577888899999999999999999999999876 56677777777777 6 8999999999997
Q ss_pred HhcCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 048281 473 SRYGVVPTIEHYTCVIDMLGR----AGQLNEAYELALAMPNEAN----PVVWRTLLAASRL----HGNTDLAEIAAQRVF 540 (660)
Q Consensus 473 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 540 (660)
+. + +...+..|..+|.. .+++++|.+.|++.....+ +..+..|...|.. .++.++|+..|+++.
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 73 3 56788888889987 8999999999999776444 7899999999998 889999999999999
Q ss_pred hcCCCCcchHHHHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 048281 541 QLEPGHCGNYVLMSNIYVAG-G-----KYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 541 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 578 (660)
++ |+++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 67788999999999865 3 89999999999988764
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1e-08 Score=98.75 Aligned_cols=175 Identities=6% Similarity=-0.081 Sum_probs=140.3
Q ss_pred HHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 048281 396 RDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRY 475 (660)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 475 (660)
+.....+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 344444555444556677788888999999999999999999863 33556788888899999999999999999865
Q ss_pred CCCCChHHHHH-HHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--cchH
Q 048281 476 GVVPTIEHYTC-VIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH--CGNY 550 (660)
Q Consensus 476 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~ 550 (660)
..|+...... ....+.+.++.++|...+++... +.+...+..+..++...|++++|+..++++++.+|++ +..+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3455443333 33336677888888888887543 5578899999999999999999999999999999988 7889
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHH
Q 048281 551 VLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 551 ~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
..++.+|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999888754
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=9.8e-10 Score=94.33 Aligned_cols=122 Identities=13% Similarity=0.006 Sum_probs=102.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 048281 451 VLSACSHSGFLSQGREFLPLMESRYGVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHG 527 (660)
Q Consensus 451 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 527 (660)
|...+...|++++|+..+..... ..| +...+..+..+|.+.|++++|.+.|++... +.++.+|..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456677899999999998754 333 345567889999999999999999998654 567889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHH-HHHHHh
Q 048281 528 NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDI-RHTMRQ 575 (660)
Q Consensus 528 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~ 575 (660)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577766
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=1.7e-08 Score=96.79 Aligned_cols=204 Identities=13% Similarity=0.038 Sum_probs=131.6
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C--
Q 048281 338 TFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-------K-- 408 (660)
Q Consensus 338 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 408 (660)
++..+...+...|+++.|...+..+........+ ...+....++..+...|...|++++|...|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4444445555555555555555555433100000 00001167888999999999999999999987652 1
Q ss_pred --CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----
Q 048281 409 --DVASWNIMILGYGMDGQGKEALDMFSCMCEA------KLKP-DEVTFVGVLSACSHSGFLSQGREFLPLMESRY---- 475 (660)
Q Consensus 409 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---- 475 (660)
...+|..+...|...|++++|+..++++.+. +-.| ...++..+...+...|++++|..+++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2457888999999999999999999999875 1123 34577788889999999999999999988621
Q ss_pred --CCCC-ChHHHHHHHHHHhhc------CCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 476 --GVVP-TIEHYTCVIDMLGRA------GQLNEAYELALAMPNE--ANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 476 --~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
...+ ....+..+...+... ..+.++...++..... ....++..+...|...|++++|...++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 223444444444332 2345555555555432 23457888999999999999999999998875
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=1.7e-07 Score=88.78 Aligned_cols=241 Identities=8% Similarity=-0.017 Sum_probs=162.3
Q ss_pred HHHcCCCHHHHHHHHHhcCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHH
Q 048281 279 MYGKGKCVGEALEIFEMMEEKDI-FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQ 357 (660)
Q Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 357 (660)
-..-.|++..++.-...+...+. ..-.-+.++|...|++... ..-.|....+..+...+ ..+ +..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 34446777777775555543222 2223345777777776532 11234433433333333 221 444
Q ss_pred HHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHH
Q 048281 358 IHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSK-----KDVASWNIMILGYGMDGQGKEALDM 432 (660)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~ 432 (660)
.++..+..+ .++ ......+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.
T Consensus 88 ~l~~l~~~~-~~~--------~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 88 ELENLLKDK-QNS--------PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp HHHHTTTTS-CCC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcC-CCC--------cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555444433 222 44556888899999999999999998742 2456788889999999999999999
Q ss_pred HHHHHHcCCCC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 048281 433 FSCMCEAKLKP-----DEVTFVGVLSAC--SHSG--FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYEL 503 (660)
Q Consensus 433 ~~~m~~~g~~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 503 (660)
+++|.+. .| +..+...+..++ ...| +.++|..+|+++... .|+......+..++.+.|++++|.+.
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 9999884 67 366667777663 3334 899999999998653 35533444455589999999999999
Q ss_pred HHhCCC------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 504 ALAMPN------------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 504 ~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
++.+.. +.++.+...++......|+ .|.++++++.+..|++|..
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 986543 3456677677777777787 8899999999999998753
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=1.4e-08 Score=108.45 Aligned_cols=160 Identities=10% Similarity=0.004 Sum_probs=126.0
Q ss_pred cCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 048281 392 CGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFL 468 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 468 (660)
.|++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998763 357889999999999999999999999999863 335678888889999999999999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcC
Q 048281 469 PLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH---GNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 543 (660)
+++.+. .+.+...+..+..+|.+.|++++|.+.+++... +.+...+..+..++... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999873 344678899999999999999999999998643 45678899999999999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 048281 544 PGHCGNYVLMS 554 (660)
Q Consensus 544 p~~~~~~~~l~ 554 (660)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.88 E-value=1e-08 Score=90.73 Aligned_cols=155 Identities=10% Similarity=-0.064 Sum_probs=93.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 382 NNALMDMYTKCGSMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 382 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++.... .|+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~---------- 76 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK---------- 76 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH----------
Confidence 44455555666666666666665542 24455555555666666666666666555443 2222211
Q ss_pred CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 048281 459 GFLSQGREFLPLMESRYGVVPTIEHYTCVIDM-LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIA 535 (660)
Q Consensus 459 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 535 (660)
..+... +...+...+|...+++... +.+...+..+..++...|++++|+..
T Consensus 77 --------------------------~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 77 --------------------------SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp --------------------------HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------HHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 111101 0111111223444444322 34577888888888888888999988
Q ss_pred HHHHHhcCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 536 AQRVFQLEPGH--CGNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 536 ~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
++++++.+|+. +..+..++.++...|+.++|...+++..
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 98888888764 4578888888988999988888887764
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.88 E-value=5.9e-09 Score=89.11 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY 557 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 557 (660)
+...+..+...+.+.|++++|...|++... +.+...|..+..+|...|++++|+..|+++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 446677788889999999999999988643 557889999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 048281 558 VAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 558 ~~~g~~~~a~~~~~~~~~~ 576 (660)
...|++++|...+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=9.5e-09 Score=87.68 Aligned_cols=101 Identities=10% Similarity=-0.074 Sum_probs=89.1
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 477 VVPT-IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 477 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
+.|+ ...+..+...+.+.|++++|...|+++.. +.++..|..+..+|...|++++|+..|+++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 45677888889999999999999988654 55788999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCC
Q 048281 554 SNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+.+|...|++++|...+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998753
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=4.1e-08 Score=89.50 Aligned_cols=164 Identities=7% Similarity=-0.045 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHhHHHH----------------HHHHHHhcCChHHHHHHHHHHHHc
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--K-DVASWNI----------------MILGYGMDGQGKEALDMFSCMCEA 439 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~ 439 (660)
...+......+...|++++|...|++... | +...|.. +..+|.+.|++++|+..|++.++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444556677889999999999998763 2 3456666 889999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCH--HH
Q 048281 440 KLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ--LNEAYELALAMPNEANP--VV 515 (660)
Q Consensus 440 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~ 515 (660)
. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|. .+.+...++.... |++ ..
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CCchhHH
Confidence 3 335678888889999999999999999999873 34467888888888876654 4556667776653 333 34
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 516 WRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
+.....++...|++++|+..|++++++.|++
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5556777788899999999999999999964
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.83 E-value=3.6e-08 Score=81.48 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVA 559 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 559 (660)
..+......|.+.|++++|++.|++... +.+...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3455556666666666666666665432 34556666666666666666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHHHh
Q 048281 560 GGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 560 ~g~~~~a~~~~~~~~~ 575 (660)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666655
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=8.5e-08 Score=104.33 Aligned_cols=189 Identities=12% Similarity=-0.009 Sum_probs=147.5
Q ss_pred hcccchHHHHHHHHHHH--------HhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHH
Q 048281 347 SHLAALMHGRQIHGYIV--------VNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNI 415 (660)
Q Consensus 347 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 415 (660)
...|++++|.+.++.+. ...... ...+..+...|.+.|++++|...|++.. ..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES---------VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC---------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc---------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 67788899998888887 332222 7788899999999999999999999876 347789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG 495 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 495 (660)
+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++ .+.|+++.+. .+.+...|..+..+|.+.|
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEG 548 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999863 2355778888889999999999 9999999873 3446688999999999999
Q ss_pred CHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCcc
Q 048281 496 QLNEAYELALAMPN-EAN-PVVWRTLLAASRLHGN-----TDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 496 ~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 548 (660)
++++|.+.|+++.. .|+ ...|..+..++...++ .+...+..+.+.++.+.++.
T Consensus 549 ~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp CHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred CHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99999999999875 444 5688888888876665 23344444444445554444
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=5.2e-08 Score=104.11 Aligned_cols=152 Identities=15% Similarity=-0.017 Sum_probs=113.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 048281 423 DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYE 502 (660)
Q Consensus 423 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 502 (660)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.++++.+ -.+.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467889999999888752 33467788888889999999999999999876 334457788899999999999999999
Q ss_pred HHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC---CChHHHHHHHHHHHhCC
Q 048281 503 LALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG---GKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 503 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 577 (660)
.+++... +.+...|..+..++...|++++|...++++++++|+++..+..++.++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9988643 456778899999999999999999999999999999999999999999999 99999999988875543
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=3.7e-08 Score=81.37 Aligned_cols=109 Identities=9% Similarity=-0.101 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAAS 523 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 523 (660)
..+......+.+.|++++|++.|+++++ -.+.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3455666777788888888888888776 2344667788888888888888888888887543 45678899999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI 556 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 556 (660)
...|++++|+..|+++++++|+++.++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998888777665
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=4.6e-08 Score=89.14 Aligned_cols=161 Identities=11% Similarity=-0.015 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHhccCCHHHHHHHHHHhHHh
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPD-EVTFVG----------------VLSACSHSGFLSQGREFLPLMESR 474 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~ 474 (660)
.+-.....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|+.+.+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444566778999999999999999985 454 345555 778899999999999999999873
Q ss_pred cCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCcchH
Q 048281 475 YGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGN--TDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 475 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
.+.+...+..+..+|...|++++|...|++... +.+...|..+..+|...|+ .+.+...++++....|.. ..+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 345678899999999999999999999998654 4567889999988876654 445566666665433322 345
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 551 VLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 551 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..++.++...|++++|+..+++..+..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 667888888999999999999998743
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=1.3e-06 Score=83.56 Aligned_cols=149 Identities=12% Similarity=0.113 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-----
Q 048281 424 GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLS--QGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ----- 496 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 496 (660)
+++++++.+++++.+.. +-|...|..-...+.+.|.++ +++++++.+++. ..-|...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 45556666666655542 224444444444444445544 556666666552 23344445444444444444
Q ss_pred -HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---CCCcchHHHHHHHHHhCCChHHHHHH
Q 048281 497 -LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDL-AEIAAQRVFQLE---PGHCGNYVLMSNIYVAGGKYEEVLDI 569 (660)
Q Consensus 497 -~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 569 (660)
++++++.++++.. +.|...|+-+...+.+.|+... +...+.++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 5666666555432 4456666666666666665333 444555555554 55556666667777667777777777
Q ss_pred HHHHHh
Q 048281 570 RHTMRQ 575 (660)
Q Consensus 570 ~~~~~~ 575 (660)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766654
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=1.5e-07 Score=86.09 Aligned_cols=96 Identities=10% Similarity=-0.054 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc----------
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC---------- 547 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------- 547 (660)
+...+..+..+|.+.|++++|.+.+++... +.+...|..+..++...|++++|+..++++++..|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 334444444444444444444444443221 22344445555555555555555555555555444443
Q ss_pred ------chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 548 ------GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 548 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..+..++.+|...|++++|.+.+++..+
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.75 E-value=9e-08 Score=81.09 Aligned_cols=96 Identities=11% Similarity=-0.054 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
...+..+...+.+.|++++|...|++... +.+...|..+..++...|++++|+..|+++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 35566777888899999999999987643 4577889999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048281 559 AGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~~~~ 576 (660)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=2.8e-07 Score=85.08 Aligned_cols=149 Identities=13% Similarity=0.010 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---hHHHHHHHHHHh------------------cCChHHHHHHHHH
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSK--KD-V---ASWNIMILGYGM------------------DGQGKEALDMFSC 435 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~------------------~g~~~~A~~~~~~ 435 (660)
..+..+..+|.+.|++++|...|+++.+ |+ . .++..+..++.. .|+.++|+..|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 5678889999999999999999998762 32 2 245556666554 5789999999999
Q ss_pred HHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-
Q 048281 436 MCEAKLKPDEV-TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN- 512 (660)
Q Consensus 436 m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~- 512 (660)
+++. .|+.. ....... ...+...+. .....+...|.+.|++++|...|+++.. .|+
T Consensus 122 ~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 122 LVRG--YPNSQYTTDATKR----------LVFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHTT--CTTCTTHHHHHHH----------HHHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHH--CcCChhHHHHHHH----------HHHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC
Confidence 9985 45543 2211110 011111111 1234567889999999999999998654 233
Q ss_pred H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 513 P---VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 513 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
+ ..+..+..++.+.|+.++|+..++++....|++.+.
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 2 468889999999999999999999999988887553
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=3.6e-07 Score=88.92 Aligned_cols=186 Identities=11% Similarity=0.052 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMSK-----KD----VASWNIMILGYGMDGQGKEALDMFSCMCEAKL---KPD--EV 446 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 446 (660)
.|......|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445556778889999999988887642 12 35788899999999999999999998875311 121 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----HH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVP----TIEHYTCVIDMLGRAGQLNEAYELALAMPN----EAN----PV 514 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~ 514 (660)
++..+...|.. |++++|+..|++..+-..-.. ...++..+..+|.+.|++++|+..|++... .++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67778888888 999999999999876321111 146788899999999999999999987643 122 23
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch-----HHHHHHHHHhCCChHHHHHH
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN-----YVLMSNIYVAGGKYEEVLDI 569 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 569 (660)
.+..++.++...|++++|...+++++ +.|..... ...++..+ ..|+.+.+.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66677778888899999999999999 98875432 33445545 56776666553
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=3.5e-06 Score=87.31 Aligned_cols=125 Identities=9% Similarity=-0.045 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC-SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
..|...+....+.++.+.|..+|+++ .. ..++...|......- ...++.+.|..+|+...+.++ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 45666677776778899999999988 32 123444444322211 123479999999999988532 33456677788
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 490 MLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
...+.|+.+.|..+|+++. .....|...+..-..+|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999985 3678888888888888999999998888875
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=1.3e-05 Score=82.95 Aligned_cols=201 Identities=10% Similarity=0.018 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHH-HHHHHhc
Q 048281 218 KALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEA-LEIFEMM 296 (660)
Q Consensus 218 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A-~~~~~~~ 296 (660)
.+..+|+++... .+.+...|...+..+.+.|+.+.|..+++...+. +.+...+.. |....+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 456677777664 2334556666666677778888888888887777 333333322 2211111111 1111111
Q ss_pred C------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-ccchHHHHHHHHHHH
Q 048281 297 E------------EKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSH-LAALMHGRQIHGYIV 363 (660)
Q Consensus 297 ~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~ 363 (660)
. ......|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001234555666666667777777777777 211 1233333221111111 225777777777776
Q ss_pred HhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048281 364 VNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMC 437 (660)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 437 (660)
+.... + +..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.
T Consensus 348 ~~~~~-~--------~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKHPD-S--------TLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHCTT-C--------HHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65422 1 4445556666667777777777777763 245556666655555666666666666655
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.6e-07 Score=82.92 Aligned_cols=125 Identities=14% Similarity=0.007 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 048281 378 DVFMNNALMDMYTKCGSMRDAQMVFTKMSK--KDVASWNIMILG-YGMDGQGKEALDMFSCMCEAKLKP-DEVTFVGVLS 453 (660)
Q Consensus 378 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 453 (660)
+...+..+...|.+.|++++|...|++... |+...+..+... +...+...+|+..+++..+. .| +...+..+..
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~ 116 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAV 116 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 377889999999999999999999999873 333333222111 11212223355556555553 23 3444555555
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHhhcCCHHHHHHHHH
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVV-PTIEHYTCVIDMLGRAGQLNEAYELAL 505 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 505 (660)
++...|++++|...|+.+.+. .-. .+...+..+..+|...|+.++|...|+
T Consensus 117 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 117 QYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 555556666666655555442 111 113344445555555555555544444
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=1.6e-07 Score=81.75 Aligned_cols=127 Identities=10% Similarity=-0.057 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASR 524 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 524 (660)
.+..+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|...+++... +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444555566666666666666666652 233456666777777777777777777766432 345678888899999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHHHHHH--HHHhCCChHHHHHHHHHHHh
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYVLMSN--IYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 575 (660)
..|++++|...+++++++.|.++..+..+.. .+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998877754444 47888999999999887643
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=2.2e-07 Score=89.39 Aligned_cols=134 Identities=9% Similarity=-0.024 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHH-
Q 048281 442 KPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTL- 519 (660)
Q Consensus 442 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l- 519 (660)
+.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|...++++.. .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 344556777778889999999999999999873 445678899999999999999999999999875 4555433333
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 520 LAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
...+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3347778889999999999999999999999999999999999999999999998753
No 121
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-07 Score=78.13 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAA 522 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 522 (660)
...+..+...+...|++++|...++.+.+ ..+.+...+..+..+|...|++++|.+.+++... +.+...|..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455555566666666666666666654 2233455666666677777777777777666432 3456788888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCC
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGK 562 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 562 (660)
+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8999999999999999999999888888888888877664
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=2.2e-06 Score=82.76 Aligned_cols=162 Identities=9% Similarity=-0.076 Sum_probs=123.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHH
Q 048281 414 NIMILGYGMDGQGKEALDMFSCMCEAKL-KPDEV----TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEHY 484 (660)
Q Consensus 414 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 484 (660)
...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++.+.+...-.++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999887421 22221 2334556677788999999999999873122223 3368
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------cch
Q 048281 485 TCVIDMLGRAGQLNEAYELALAMPN--------EA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH------CGN 549 (660)
Q Consensus 485 ~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 549 (660)
+.+...|...|++++|...++++.. .+ ...++..++..|...|++++|+..+++++++.+.. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999987642 11 22478899999999999999999999999874332 567
Q ss_pred HHHHHHHHHhCCC-hHHHHHHHHHHHh
Q 048281 550 YVLMSNIYVAGGK-YEEVLDIRHTMRQ 575 (660)
Q Consensus 550 ~~~l~~~~~~~g~-~~~a~~~~~~~~~ 575 (660)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999995 6999999988743
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=1.1e-05 Score=77.29 Aligned_cols=226 Identities=7% Similarity=-0.005 Sum_probs=166.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCHHH-HHHHHHHHhccc--chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH---
Q 048281 316 NHDGTLRLFDRMLSAGFQPDLVT-FSTVLPACSHLA--ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY--- 389 (660)
Q Consensus 316 ~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--- 389 (660)
..++|+++++.++.. .|+..| ++.--..+...+ +++++...++.++...++. ..+|+.-...+
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~---------y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN---------YQIWNYRQLIIGQI 116 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC---------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc---------HHHHHHHHHHHHHH
Confidence 345677777777664 454433 343334445555 7777777777777766555 45555544444
Q ss_pred -Hhc---CCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 048281 390 -TKC---GSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGK--EALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF 460 (660)
Q Consensus 390 -~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 460 (660)
... +++++++.+++.+. .++..+|+.-.-.+.+.|.++ ++++.++++++.. .-|...|+.-...+.+.+.
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 444 78899999999876 457789988888888889888 9999999999875 3466677666666666665
Q ss_pred ------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC
Q 048281 461 ------LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE-AYELALAMPN-----EANPVVWRTLLAASRLHGN 528 (660)
Q Consensus 461 ------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~ 528 (660)
++++++.++.++. -.+-|...|+-+..++.+.|+..+ +..+.+++.. ..++..+..++.+|.+.|+
T Consensus 196 ~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred cchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 8999999999987 355678889888889988888544 5556666543 3467889999999999999
Q ss_pred hHHHHHHHHHHHh-cCCCCcchHHHHHH
Q 048281 529 TDLAEIAAQRVFQ-LEPGHCGNYVLMSN 555 (660)
Q Consensus 529 ~~~A~~~~~~~~~-~~p~~~~~~~~l~~ 555 (660)
.++|+++++.+.+ .+|-....|...+.
T Consensus 274 ~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 274 YNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 9999999999997 79988777665544
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.6e-07 Score=82.99 Aligned_cols=120 Identities=7% Similarity=0.039 Sum_probs=88.1
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHHcCCh--H
Q 048281 456 SHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAA-SRLHGNT--D 530 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~--~ 530 (660)
...|++++|...++...+. .+.+...+..+..+|...|++++|...|++... +.+...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777776652 334556777777777777888888777776543 4466677777777 7788887 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 531 LAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 531 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888887653
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=2e-07 Score=76.42 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAAS 523 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 523 (660)
..+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...++++.. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45555666666677777777777776652 233456667777777777777777777766543 34667888888889
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGG 561 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 561 (660)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999988888888888776544
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=3.4e-07 Score=83.61 Aligned_cols=146 Identities=10% Similarity=-0.128 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 048281 381 MNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF 460 (660)
Q Consensus 381 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 460 (660)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344556666667777777777776666666666666666777777777777776666542 2344555556666666666
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048281 461 LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRV 539 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (660)
+++|.+.++.+.+...-.+... +...|. .. +.....|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666655211000000 000000 01 123467888999999999999999999999
Q ss_pred HhcCCCC
Q 048281 540 FQLEPGH 546 (660)
Q Consensus 540 ~~~~p~~ 546 (660)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999876
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=1.8e-07 Score=77.44 Aligned_cols=117 Identities=7% Similarity=-0.105 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAA 522 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 522 (660)
...+..+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.+++... +.+...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 344555556666677777777777776652 233556677777777777777777777766433 3456788888889
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKY 563 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 563 (660)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888888999998888775
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.5e-07 Score=77.81 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
...+..+...+.+.|++++|...|++... +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34566777788888888888888887543 4567889999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048281 559 AGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~~~~ 576 (660)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=5.1e-08 Score=93.51 Aligned_cols=189 Identities=7% Similarity=-0.106 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSAC 455 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 455 (660)
...+..+...+.+.|++++|...|++.. ..+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6678888999999999999999999875 3478899999999999999999999999998853 33566788888899
Q ss_pred hccCCHHHHHHHHHHhHHhcCCC---CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048281 456 SHSGFLSQGREFLPLMESRYGVV---PTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLA 532 (660)
Q Consensus 456 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 532 (660)
...|++++|...|+.+.+...-. .....+..+ ...+...+.. ......+.+..+...+... ..|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999987631111 111222221 1222222222 2222334444444444332 36899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 048281 533 EIAAQRVFQLEPGHCGNYVLMSNIYVAG-GKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 533 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 576 (660)
++.++++++++|++......+..++.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777777777776 7899999999988653
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=2.1e-07 Score=91.67 Aligned_cols=142 Identities=13% Similarity=-0.023 Sum_probs=103.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
...|..+...|.+.|++++|+..|++.++.. |+...+ ..+.+.++-. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA---------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH---------HHHHHHHHHHH
Confidence 4466666666667777777777777666542 221100 0011111000 01357788888
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH-
Q 048281 490 MLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEV- 566 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a- 566 (660)
+|.+.|++++|+..+++... +.+...|..+..+|...|++++|+..|+++++++|+++.++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999888887643 457789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 048281 567 LDIRHTM 573 (660)
Q Consensus 567 ~~~~~~~ 573 (660)
...++.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4566665
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.62 E-value=3.4e-07 Score=89.07 Aligned_cols=196 Identities=9% Similarity=-0.019 Sum_probs=146.3
Q ss_pred ccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 048281 349 LAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKE 428 (660)
Q Consensus 349 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 428 (660)
.|++++|.++++...+..... .+...++++.|...|.. ....|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~------------------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS------------------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC------------------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHcccc------------------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHH
Confidence 456667777776665442110 01114778888887764 4667889999999
Q ss_pred HHHHHHHHHHcCC---CC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcCCHHH
Q 048281 429 ALDMFSCMCEAKL---KP--DEVTFVGVLSACSHSGFLSQGREFLPLMESRY---GVVP-TIEHYTCVIDMLGRAGQLNE 499 (660)
Q Consensus 429 A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~ 499 (660)
|...|.+..+... .+ -..+|..+...|...|++++|+..|++..+-+ +... ...++..+..+|.. |++++
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 9999998876321 11 13478888889999999999999999887632 1111 13678889999988 99999
Q ss_pred HHHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhCCChHH
Q 048281 500 AYELALAMPN----EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC------GNYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 500 A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~ 565 (660)
|+..|++... ..+ ..++..+...|...|++++|+..+++++++.|.+. ..+..++.++...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999987643 111 45788899999999999999999999999865443 266778888889999999
Q ss_pred HHHHHHHHH
Q 048281 566 VLDIRHTMR 574 (660)
Q Consensus 566 a~~~~~~~~ 574 (660)
|...+++..
T Consensus 214 A~~~~~~al 222 (307)
T 2ifu_A 214 AQKCVRESY 222 (307)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999987
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.62 E-value=9.5e-07 Score=85.31 Aligned_cols=164 Identities=9% Similarity=-0.098 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CCCC--hH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDE-----VTFVGVLSACSHSGFLSQGREFLPLMESRYG--VVPT--IE 482 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~ 482 (660)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...++++.+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877765322111 1233344566778899999999888875211 1111 35
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--C----c
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN----EAN-----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG--H----C 547 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~ 547 (660)
+++.+...|...|++++|...+++... .++ ..++..++..|...|++++|+..+++++++.+. + +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999998877541 122 258888999999999999999999999886432 1 4
Q ss_pred chHHHHHHHHHhCCChHHH-HHHHHHHHh
Q 048281 548 GNYVLMSNIYVAGGKYEEV-LDIRHTMRQ 575 (660)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 575 (660)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777877643
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=2.4e-06 Score=77.83 Aligned_cols=161 Identities=9% Similarity=-0.109 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK-KDVASWNIMILGYGMDG----QGKEALDMFSCMCEAKLKPDEVTFVGVLS 453 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 453 (660)
+..+..|...|...+++++|...|++..+ .+..++..|...|.. + ++++|+.+|++..+.| +...+..|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77888899999999999999999998764 477888889888888 6 8999999999998865 5667777777
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 048281 454 ACSH----SGFLSQGREFLPLMESRYGVV-PTIEHYTCVIDMLGR----AGQLNEAYELALAMPNE-ANPVVWRTLLAAS 523 (660)
Q Consensus 454 ~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~ 523 (660)
.|.. .+++++|..+|+...+. +.. .....+..|..+|.. .+++++|...|++.... +++..+..|...|
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7777 88999999999999762 321 126788899999988 88999999999987543 6777888888888
Q ss_pred HHc-C-----ChHHHHHHHHHHHhcCC
Q 048281 524 RLH-G-----NTDLAEIAAQRVFQLEP 544 (660)
Q Consensus 524 ~~~-g-----~~~~A~~~~~~~~~~~p 544 (660)
..- | +.++|+..|+++.+...
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 764 3 89999999999988754
No 134
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=2e-07 Score=76.36 Aligned_cols=95 Identities=15% Similarity=0.017 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 560 (660)
.+..+...+.+.|++++|...+++... +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 355667788899999999999988654 457789999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 048281 561 GKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 561 g~~~~a~~~~~~~~~~~ 577 (660)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=2.2e-07 Score=79.21 Aligned_cols=102 Identities=10% Similarity=-0.119 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAAS 523 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 523 (660)
..+..+...+...|++++|...|+.+.. .-+.+...|..+..+|...|++++|...|++... +.++..|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555666778888888888888888876 2344677788888888888999999888887643 45678889999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 524 RLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
...|++++|+..|++++++.|+++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999987654
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=4.8e-06 Score=80.32 Aligned_cols=160 Identities=9% Similarity=-0.069 Sum_probs=122.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHH
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSKK---DV------ASWNIMILGYGMDGQGKEALDMFSCMCEAKLK-PD----EVTF 448 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~ 448 (660)
...+..+...|++++|...+++..+. +. ..+..+...+...+++++|+..|+++.+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467788899999999999886532 11 13345667777888999999999999984322 22 2368
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhc----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CC-CHHH
Q 048281 449 VGVLSACSHSGFLSQGREFLPLMESRY----GVVPT-IEHYTCVIDMLGRAGQLNEAYELALAMPN-------EA-NPVV 515 (660)
Q Consensus 449 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~ 515 (660)
+.+...|...|++++|..+++++.+.. +..+. ..++..+...|.+.|++++|...+++... .+ -..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 888889999999999999999988521 11122 24788999999999999999999887542 11 2568
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 048281 516 WRTLLAASRLHGN-TDLAEIAAQRVFQL 542 (660)
Q Consensus 516 ~~~l~~~~~~~g~-~~~A~~~~~~~~~~ 542 (660)
|..+..++...|+ +++|...+++++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999995 69999999999875
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=3.2e-07 Score=73.57 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG--HCGNYVLMSNI 556 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 556 (660)
...+..+...+.+.|++++|...+++... +.+...|..+..++...|++++|+..++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 45566777778888888888888877543 446778888899999999999999999999999998 88899999999
Q ss_pred HHhC-CChHHHHHHHHHHHhCCC
Q 048281 557 YVAG-GKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 557 ~~~~-g~~~~a~~~~~~~~~~~~ 578 (660)
+... |++++|.+.+++..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999877543
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.2e-06 Score=81.87 Aligned_cols=192 Identities=8% Similarity=-0.130 Sum_probs=121.6
Q ss_pred cccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHH-------HHHHHhcCCHHHHHHHHhcCCC--C-------C--
Q 048281 348 HLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNAL-------MDMYTKCGSMRDAQMVFTKMSK--K-------D-- 409 (660)
Q Consensus 348 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~--~-------~-- 409 (660)
..++...|.+.|..+....+.. ...|+.+ ...+.+.++..++...+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~---------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESA---------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC---------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhChhh---------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 4577777777777777776655 6667666 4555555555555554444332 1 1
Q ss_pred -------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 048281 410 -------------VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYG 476 (660)
Q Consensus 410 -------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 476 (660)
...+-.+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. .
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~ 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C
Confidence 112334566677788888888888777664 354444444444677778888888888755431 1
Q ss_pred CCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 477 VVPT--IEHYTCVIDMLGRAGQLNEAYELALAMPNE---A--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 477 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
.|. ...+..+..++.+.|++++|+..|++.... | ....+.....++.+.|+.++|...|+++...+|+ +..
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 111 235667777788888888888888776432 2 2235666777778888888888888888888886 554
Q ss_pred HHHH
Q 048281 550 YVLM 553 (660)
Q Consensus 550 ~~~l 553 (660)
+..|
T Consensus 244 ~~aL 247 (282)
T 4f3v_A 244 AAAL 247 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.1e-06 Score=82.09 Aligned_cols=181 Identities=8% Similarity=-0.050 Sum_probs=140.2
Q ss_pred hcCCHHHHHHHHhcCCC---CCHhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCH---------------
Q 048281 391 KCGSMRDAQMVFTKMSK---KDVASWNIM-------ILGYGMDGQGKEALDMFSCMCEAKLKPDE--------------- 445 (660)
Q Consensus 391 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 445 (660)
..++...|.+.|.++.. .....|+.+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999998872 356788888 4566666666666666665554 22221
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 048281 446 -------VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANP----V 514 (660)
Q Consensus 446 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 514 (660)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....+++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2234456678899999999999998865 2354446677777899999999999999876654433 3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 515 VWRTLLAASRLHGNTDLAEIAAQRVFQLE--PG-HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 515 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999998643 54 4457889999999999999999999999874
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=6e-07 Score=76.42 Aligned_cols=99 Identities=8% Similarity=-0.068 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASR 524 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 524 (660)
.+..+...+.+.|++++|...|+.+.+ --+.+...|..+..+|...|++++|...|++... +.++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 444555566666777777777776665 2333556667777777777777777777776543 445678888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCCc
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
..|++++|+..|++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888653
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.52 E-value=7.1e-07 Score=74.78 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048281 479 PTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI 556 (660)
Q Consensus 479 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 556 (660)
.+...+..+...+...|++++|...|++... +.+...|..+..++...|++++|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566777888888888888888888877543 44677888899999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 048281 557 YVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 557 ~~~~g~~~~a~~~~~~~~~~ 576 (660)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=4.8e-07 Score=78.73 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVA 559 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 559 (660)
..+..+...|.+.|++++|+..|++... +.+...|..+..+|...|++++|+..++++++++|+++..|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4455555555556666666665555432 23455566666666666666666666666666666666666666666666
Q ss_pred CCChHHHHHHHHHHHh
Q 048281 560 GGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 560 ~g~~~~a~~~~~~~~~ 575 (660)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666666554
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=6.2e-07 Score=79.13 Aligned_cols=127 Identities=10% Similarity=-0.031 Sum_probs=96.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HhhcCCH--
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM-LGRAGQL-- 497 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 497 (660)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34577788888888877753 345667777778888888888888888888763 23456677778888 7788888
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchH
Q 048281 498 NEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 498 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 550 (660)
++|...++++.. +.+...|..+...+...|++++|+..++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 899888887643 44677888999999999999999999999999999886543
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.3e-06 Score=70.56 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASR 524 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 524 (660)
.+..+...+...|++++|...++.+... .+.+...+..+..+|...|++++|...+++... +.+...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555542 222444555555555556666666555554322 234556666666777
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNI 556 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 556 (660)
..|++++|...++++++..|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 77777777777777777777666555555544
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=4.2e-07 Score=75.14 Aligned_cols=94 Identities=5% Similarity=-0.106 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc-------hHHH
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG-------NYVL 552 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 552 (660)
..+..+...+.+.|++++|++.|++... +.+...|..+..+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3566777888888888888888887543 456778888899999999999999999999988776543 5677
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 048281 553 MSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 553 l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
++.++...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888889999999999888765
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=7.8e-06 Score=78.81 Aligned_cols=163 Identities=8% Similarity=-0.082 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--H
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSK---KDV------ASWNIMILGYGMDGQGKEALDMFSCMCEAKL---KPD--E 445 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 445 (660)
..+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567778889999999888875431 111 2344566677888999999999999886421 122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CC-C
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT-----IEHYTCVIDMLGRAGQLNEAYELALAMPN-------EA-N 512 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~ 512 (660)
.+++.+...|...|++++|...++++.+.....|+ ..++..+...|.+.|++++|...+++... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888888999999999999999998732111222 25888999999999999999999987532 11 1
Q ss_pred HHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 048281 513 PVVWRTLLAASRLHGNTDLA-EIAAQRVFQL 542 (660)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 542 (660)
..+|..+..+|...|++++| ...+++++.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788899999999999999 7878888764
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=7.9e-07 Score=80.14 Aligned_cols=171 Identities=8% Similarity=-0.109 Sum_probs=104.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 048281 385 LMDMYTKCGSMRDAQMVFTKMSKK---DVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFL 461 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 461 (660)
.+......|+++.+.+.|+..... ....+..+...+...|++++|+..|++..+. .|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence 334444556666666666543321 3456677777788888888888888888774 2221100000
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048281 462 SQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRV 539 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 539 (660)
. ...-.. ......+..+..+|.+.|++++|...+++... +.+...|..+..+|...|++++|+..|+++
T Consensus 78 -~----~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -I----LLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -H----HHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -h----HHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0 000000 00134677778888888888888888877543 456778999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhCCChHHHH-HHHHHHHhC
Q 048281 540 FQLEPGHCGNYVLMSNIYVAGGKYEEVL-DIRHTMRQQ 576 (660)
Q Consensus 540 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 576 (660)
+++.|+++..+..++.++...++.+++. ..++.+...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999888887776 555555443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1e-06 Score=72.59 Aligned_cols=111 Identities=8% Similarity=-0.169 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAAS 523 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 523 (660)
..+......+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555556667777777777777777652 334566777777778888888888887776543 44677888889999
Q ss_pred HHcCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 048281 524 RLHGNTDLAEIAAQRVFQLE------PGHCGNYVLMSNIYV 558 (660)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 558 (660)
...|++++|+..++++++++ |.++.....+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 777766666665543
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=7.6e-07 Score=75.27 Aligned_cols=105 Identities=10% Similarity=-0.074 Sum_probs=78.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASR 524 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 524 (660)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...|++... +.++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555677777888888888777662 334566777778888888888888888877543 456678888899999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
..|++++|+..+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 99999999999999999998887654443
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=1.5e-06 Score=75.61 Aligned_cols=108 Identities=13% Similarity=-0.048 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAA 522 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 522 (660)
...+..+...+...|++++|+..|+.+.+. .+.+...|..+..+|.+.|++++|+..+++... +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345556666677777777777777777662 233566777788888888888888888877543 4567889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMS 554 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 554 (660)
|...|++++|+..|+++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999988665544
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=1.2e-06 Score=70.76 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY 557 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 557 (660)
....+..+...+...|++++|...+++... +.+...|..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345778888999999999999999998643 457888999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCC
Q 048281 558 VAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 558 ~~~g~~~~a~~~~~~~~~~~ 577 (660)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987743
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.43 E-value=1.1e-06 Score=72.95 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=89.6
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048281 478 VPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSN 555 (660)
Q Consensus 478 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 555 (660)
+.+...+..+...+.+.|++++|...+++... +.+...|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 34567888899999999999999999998643 4577899999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 048281 556 IYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 556 ~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.42 E-value=1.6e-06 Score=70.90 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
...+..+...+...|++++|.+.++++.. +.+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788899999999999999999988653 4567889999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 048281 559 AGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 559 ~~g~~~~a~~~~~~~~~~ 576 (660)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=5.1e-06 Score=72.01 Aligned_cols=129 Identities=8% Similarity=-0.091 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456666777777888888888888777653 335666777777777888888888888887762 34456777788888
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHhc
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTL--LAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
|...|++++|...++++.. +.+...+..+ +..+...|++++|+..+.+...+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8888888888888877543 3344455333 33367778888888888776553
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=1.9e-06 Score=77.85 Aligned_cols=129 Identities=9% Similarity=-0.026 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC-C----H
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRY---GVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN----EA-N----P 513 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~----~ 513 (660)
.+..+...+...|++++|...+++..+.. +..+ ....+..+...|...|++++|.+.+++... .+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444445555444444443310 1111 123445555555556665555555544321 11 1 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCc----chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQLE--PGHC----GNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
..+..+...+...|++++|+..+++++++. .+++ ..+..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346666777777777777777777777642 1221 2356778888888888888888777644
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=3.2e-06 Score=76.26 Aligned_cols=153 Identities=12% Similarity=-0.002 Sum_probs=115.7
Q ss_pred HhcCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCH
Q 048281 390 TKCGSMRDAQM---VFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEA----KLKP-DEVTFVGVLSACSHSGFL 461 (660)
Q Consensus 390 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~ 461 (660)
...|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45789999999 665533345678899999999999999999999998862 2122 235677777889999999
Q ss_pred HHHHHHHHHhHHhcCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCH----HHHHHHHHHHHHcCC
Q 048281 462 SQGREFLPLMESRYGVVP-----TIEHYTCVIDMLGRAGQLNEAYELALAMPN----EANP----VVWRTLLAASRLHGN 528 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~l~~~~~~~g~ 528 (660)
++|...+++..+...-.+ ....+..+...+...|++++|...+++... .++. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999999876321122 235678889999999999999999887542 2222 346788889999999
Q ss_pred hHHHHHHHHHHHhc
Q 048281 529 TDLAEIAAQRVFQL 542 (660)
Q Consensus 529 ~~~A~~~~~~~~~~ 542 (660)
+++|...+++++++
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999886
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.37 E-value=3.1e-06 Score=73.36 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34678889999999999999999999999999999999999999999999999999999998774
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=4.4e-06 Score=70.82 Aligned_cols=108 Identities=14% Similarity=-0.067 Sum_probs=63.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLA 521 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 521 (660)
+..+...+...|++++|...|+.+.+ ..|+ ...+..+..+|...|++++|...+++... +.+...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33333444444444444444444432 1222 34455555555566666666665554322 335667777778
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 522 ASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
++...|++++|...+++++++.|+++..+..+..+..
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888887766666655543
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=2.4e-06 Score=71.45 Aligned_cols=100 Identities=11% Similarity=-0.120 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 048281 444 DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLA 521 (660)
Q Consensus 444 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 521 (660)
+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+|...|++++|...+++... +.+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666777777777777777777652 233456777777777778888888777776543 446678888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC
Q 048281 522 ASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
++...|++++|+..+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 899999999999999999988776
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=4.2e-06 Score=70.93 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 479 PTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EAN----PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 479 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
.+...+..+...+...|++++|.+.|++... .|+ ...|..+..+|...|++++|+..++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3567888899999999999999999998654 455 67889999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 048281 554 SNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 554 ~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+.+|...|++++|.+.+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=3.1e-06 Score=71.22 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 514 VVWRTLLAASRLHGNTDLAEIAAQRVFQL-------EPGHCGNY----VLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 514 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
..|..+..++...|++++|+..+++++++ +|+++..| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999 99999999 99999999999999999999998763
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.31 E-value=3.4e-06 Score=69.63 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=61.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC-CC-CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHH
Q 048281 486 CVIDMLGRAGQLNEAYELALAMPN-EA-NP---VVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH---CGNYVLMSNIY 557 (660)
Q Consensus 486 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 557 (660)
.+...+...|++++|...|+++.. .| +. ..+..+..++...|++++|+..++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345556666777777766665432 22 22 366667777777777777777777777777777 56677777777
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 048281 558 VAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 558 ~~~g~~~~a~~~~~~~~~~ 576 (660)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777653
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=6.9e-07 Score=80.57 Aligned_cols=95 Identities=11% Similarity=-0.067 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN--EAN----------------PVVWRTLLAASRLHGNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (660)
..+..+...+.+.|++++|...|++... +.+ ...|..+..+|...|++++|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566666777777777777765432 112 2688889999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 544 PGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 544 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.30 E-value=5.1e-05 Score=73.35 Aligned_cols=111 Identities=6% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh----
Q 048281 463 QGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQ-------LNEAYELALAMPN--EANPVVWRTLLAASRLHGNT---- 529 (660)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~---- 529 (660)
++++.++.+++. ..-|...|+....++.+.++ ++++++.++++.. +.|...|+-+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 185 SELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 555555555542 23344455555555555544 4555555554332 34556666655555555543
Q ss_pred ----------------HHHHHHHHHHHhcC------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 530 ----------------DLAEIAAQRVFQLE------PGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 530 ----------------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.........+.... +.++.+...|+++|.+.|+.++|.++++.+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 11112222221111 34556777899999999999999999999854
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=9.8e-06 Score=66.70 Aligned_cols=116 Identities=12% Similarity=-0.081 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 345555666666666666666666666542 234555666666666667777777777666652 23345566666667
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNT 529 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 529 (660)
|.+.|++++|...+++... +.+...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7777777777776665432 33455666666666665553
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=0.00036 Score=67.46 Aligned_cols=230 Identities=10% Similarity=0.059 Sum_probs=157.7
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHhccc-chHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHH
Q 048281 312 EQCGNHDGTLRLFDRMLSAGFQPDLV-TFSTVLPACSHLA-ALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMY 389 (660)
Q Consensus 312 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 389 (660)
...+..++|+++++++... .|+.. .++.--..+...| .++++...++.++...++. ..+|+.-...+
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------y~aW~hR~wlL 133 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------YQVWHHRLLLL 133 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------HHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHH
Confidence 3344556788888887765 45444 3344334444556 4788888888887776655 67777776666
Q ss_pred Hhc-C-CHHHHHHHHhcCCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 390 TKC-G-SMRDAQMVFTKMSK---KDVASWNIMILGYGMDGQGK--------EALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 390 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
.+. + +.++++++++.+.+ +|..+|+.-.-.+.+.|..+ ++++.++++++.. .-|...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 78888898888774 46677777666666656665 8999999999874 446677777777777
Q ss_pred ccCC-------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH--------------------HHHHHHHHhCCC
Q 048281 457 HSGF-------LSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQL--------------------NEAYELALAMPN 509 (660)
Q Consensus 457 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~ 509 (660)
+.+. ++++++.+++++. -.+-|...|+-+-..+.+.|+. .+..++..++..
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 7765 6888999988886 3455677787777777776653 344444444432
Q ss_pred --------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCcchHHHHHH
Q 048281 510 --------EANPVVWRTLLAASRLHGNTDLAEIAAQRVF-QLEPGHCGNYVLMSN 555 (660)
Q Consensus 510 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 555 (660)
.+.+..+..|+..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2566788889999999999999999999987 558866555554443
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.27 E-value=6.2e-06 Score=84.97 Aligned_cols=144 Identities=13% Similarity=-0.033 Sum_probs=102.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
...|..+...|.+.|++++|+..|++.++. .|+...+ ..+...+ ... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SES--------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHH--------HHHHHHHHHHH
Confidence 456777777777888888888888877763 2221100 0011100 000 11357788888
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 048281 490 MLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVL 567 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 567 (660)
+|.+.|++++|+..++++.. +.+...|..+..+|...|++++|+..|+++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888654 4567889999999999999999999999999999999999999999999999999886
Q ss_pred H-HHHHHHh
Q 048281 568 D-IRHTMRQ 575 (660)
Q Consensus 568 ~-~~~~~~~ 575 (660)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=1.6e-06 Score=89.75 Aligned_cols=116 Identities=10% Similarity=-0.061 Sum_probs=78.1
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 048281 454 ACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDL 531 (660)
Q Consensus 454 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 531 (660)
.+.+.|++++|.+.++++.+. .+.+...|..+..+|.+.|++++|.+.+++... +.+...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345566677777777666652 233456667777777777777777777766432 3456677777888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH--HHhCCChHHHHHHHH
Q 048281 532 AEIAAQRVFQLEPGHCGNYVLMSNI--YVAGGKYEEVLDIRH 571 (660)
Q Consensus 532 A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 571 (660)
|++.+++++++.|+++..+..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888877777777777 777788888887776
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=4e-06 Score=69.20 Aligned_cols=95 Identities=9% Similarity=0.073 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------cchHHH
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH-------CGNYVL 552 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 552 (660)
..+..+...+...|++++|...+++... +.+...+..+...+...|++++|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4567777788888888888888877543 4567788888999999999999999999999987765 778899
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 048281 553 MSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 553 l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998774
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=1.4e-05 Score=78.65 Aligned_cols=94 Identities=13% Similarity=0.007 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMS--KK-D---------------VASWNIMILGYGMDGQGKEALDMFSCMCEAK 440 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 440 (660)
...+..+...|.+.|++++|...|++.. .| + ...|..+..+|.+.|++++|+..+++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999765 22 2 2455555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 441 LKPDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 441 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
+.+...+..+..++...|++++|...|+.+.+
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22333444444444444444444444444443
No 171
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00011 Score=70.59 Aligned_cols=179 Identities=10% Similarity=0.003 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 048281 395 MRDAQMVFTKMS---KKDVASWNIMILGYGMDGQ--GKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF-LSQGREFL 468 (660)
Q Consensus 395 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 468 (660)
+++++.+++.+. .++..+|+.-...+...++ +++++.++.++.+.. +-|...|+.-...+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 4577889888888888884 899999999999874 4466777776666777787 58999999
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc------
Q 048281 469 PLMESRYGVVPTIEHYTCVIDMLGRA--------------GQLNEAYELALAMPN--EANPVVWRTLLAASRLH------ 526 (660)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~------ 526 (660)
..+++. .+-|...|+....++.+. +.++++++.+.+... +.|...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999983 455677777776666655 457888888887543 56788888666655554
Q ss_pred -----CChHHHHHHHHHHHhcCCCCcchHHHHHHHH---HhCCChHHHHHHHHHHHhC
Q 048281 527 -----GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY---VAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 527 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~ 576 (660)
+.++++++.+++++++.|++.-.+..++.+. ...|..++....+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999999855444443322 2467888999999998763
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=4.8e-06 Score=67.95 Aligned_cols=97 Identities=8% Similarity=-0.103 Sum_probs=66.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc
Q 048281 449 VGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLH 526 (660)
Q Consensus 449 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 526 (660)
..+...+.+.|++++|...++.+.+. .+.+...|..+..++.+.|++++|+..+++... +.+...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34445666777777777777777662 334566777777777788888888887777543 34567788888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCc
Q 048281 527 GNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 527 g~~~~A~~~~~~~~~~~p~~~ 547 (660)
|++++|+..++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888653
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=5.7e-06 Score=68.23 Aligned_cols=108 Identities=6% Similarity=-0.128 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--C---CC----HHHHHH
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--E---AN----PVVWRT 518 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~~~ 518 (660)
+..+...+...|++++|...++.+.+. .+.+...+..+..+|...|++++|...++++.. + ++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444445555555555555555441 223344555555555555555555555554322 1 11 556777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
+..++...|++++|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 88888888888888888888888877 4555555555443
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=5.7e-06 Score=66.04 Aligned_cols=99 Identities=18% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC--CHHHHHHHHHH
Q 048281 447 TFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EA--NPVVWRTLLAA 522 (660)
Q Consensus 447 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~~l~~~ 522 (660)
.+..+...+...|++++|...++.+.+. .+.+...+..+..+|...|++++|...+++... +. +...|..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444455555666666666666666552 233445566666666666777777666665432 23 46677777777
Q ss_pred HHHc-CChHHHHHHHHHHHhcCCCCc
Q 048281 523 SRLH-GNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 523 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 547 (660)
+... |++++|++.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 888888888888877777653
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.20 E-value=6.6e-06 Score=85.13 Aligned_cols=114 Identities=8% Similarity=-0.108 Sum_probs=51.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHH
Q 048281 421 GMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEA 500 (660)
Q Consensus 421 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 500 (660)
.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|.+.++++.+ -.+.+...+..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555431 12234444455555555555555555555544 1222344555555555555555555
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 048281 501 YELALAMPN--EANPVVWRTLLAA--SRLHGNTDLAEIAAQ 537 (660)
Q Consensus 501 ~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 537 (660)
.+.+++... +.+...+..+..+ +...|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555554322 1222333333333 455555555555555
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=7.2e-06 Score=78.41 Aligned_cols=113 Identities=11% Similarity=-0.141 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 048281 444 DEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLA 521 (660)
Q Consensus 444 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 521 (660)
+...+..+...+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|...+++... +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777788888999999999999998873 334678888899999999999999999988654 456778888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 522 ASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
++...|++++|+..++++++++|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655554444443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=2.1e-05 Score=64.77 Aligned_cols=103 Identities=11% Similarity=-0.025 Sum_probs=70.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC---HHHHHHHHHH
Q 048281 451 VLSACSHSGFLSQGREFLPLMESRYGVVPTI---EHYTCVIDMLGRAGQLNEAYELALAMPN--EAN---PVVWRTLLAA 522 (660)
Q Consensus 451 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~ 522 (660)
+...+...|++++|...|+.+.+. .+.+. ..+..+..+|.+.|++++|...++++.. +.+ +..+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344555667777777777776653 11222 4666677777777777777777766532 223 5567788888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 048281 523 SRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSN 555 (660)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 555 (660)
+...|++++|...++++++..|+++........
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 899999999999999999999987655444433
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=1.7e-06 Score=70.16 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 494 AGQLNEAYELALAMPNE----A-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
.|++++|+..|++.... | +...|..+..+|...|++++|+..+++++++.|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666554321 2 234666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 048281 569 IRHTMRQ 575 (660)
Q Consensus 569 ~~~~~~~ 575 (660)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=4.6e-06 Score=72.21 Aligned_cols=76 Identities=20% Similarity=0.079 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC-GNYVLMSNI 556 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 556 (660)
...|..+..+|.+.|++++|+..+++... +.+...|..+..+|...|++++|+..++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45788888899999999999998887643 45678999999999999999999999999999999987 434444433
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.12 E-value=0.00065 Score=65.35 Aligned_cols=230 Identities=11% Similarity=0.042 Sum_probs=155.9
Q ss_pred HcCChH-HHHHHHHHHhhcCCCCCHHHH-HHHHHHHhccc----------chHHHHHHHHHHHHhCccCCCCCCCCcchh
Q 048281 313 QCGNHD-GTLRLFDRMLSAGFQPDLVTF-STVLPACSHLA----------ALMHGRQIHGYIVVNGLAKNGSCKDIDDVF 380 (660)
Q Consensus 313 ~~g~~~-~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (660)
+.|.++ +|+.++..+... .|+..|. +.--..+...+ .++.+..+++.+....+.. ..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn---------y~ 109 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------YG 109 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------HH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC---------HH
Confidence 344443 567777776654 4544332 21111111112 2567788888888776655 78
Q ss_pred HHHHHHHHHHhcCC--HHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048281 381 MNNALMDMYTKCGS--MRDAQMVFTKMS---KKDVASWNIMILGYGMDGQ-GKEALDMFSCMCEAKLKPDEVTFVGVLSA 454 (660)
Q Consensus 381 ~~~~li~~~~~~g~--~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 454 (660)
+|+.-.-.+.+.|+ ++++..+++.+. ..|..+|+.-.-.+...|. .+++++.+.++++.. +-|...|+.....
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 88888778888884 899999999887 4577899888888888888 589999999999875 3456666665554
Q ss_pred Hhcc--------------CCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhc-----------CCHHHHHHHHHhCCC
Q 048281 455 CSHS--------------GFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRA-----------GQLNEAYELALAMPN 509 (660)
Q Consensus 455 ~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~ 509 (660)
+.+. +.++++++.+..++. -.+-|...|+-+-..+.+. +.++++++.++++..
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 4433 457889999999887 3455667777665555555 457888888888654
Q ss_pred -CCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 048281 510 -EANPVVWRTLLAAS-----RLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY 557 (660)
Q Consensus 510 -~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 557 (660)
.|+. .|..+..+. ...|..++....+.++.+++|....-|..+...+
T Consensus 267 ~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 267 LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4554 454333222 2357788899999999999998766666554433
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=1.1e-05 Score=80.38 Aligned_cols=138 Identities=5% Similarity=-0.120 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 411 ASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 411 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
..|..+...+.+.|++++|+..|++.++. .|+.. .....++ ..+ ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HHH--HHHHHHHHHHHHHHH
Confidence 45677777788888888888888877752 11100 0001111 110 111234678889999
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 048281 491 LGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLD 568 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 568 (660)
|.+.|++++|++.+++... +.+...|..+..+|...|++++|+..++++++++|+++..+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654 45678899999999999999999999999999999999999999999998888887765
Q ss_pred H
Q 048281 569 I 569 (660)
Q Consensus 569 ~ 569 (660)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.12 E-value=1.3e-05 Score=66.06 Aligned_cols=105 Identities=8% Similarity=-0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHH
Q 048281 412 SWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI-EHYTCVIDM 490 (660)
Q Consensus 412 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~ 490 (660)
++..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|++.++.+++. .|+. ..+..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~---- 81 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKL---- 81 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHH----
Confidence 45555555555666666666666555532 223344445555555555555555555555431 0000 00000
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 048281 491 LGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG 545 (660)
Q Consensus 491 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 545 (660)
-..+|..+..++...|++++|++.|+++++..|+
T Consensus 82 ---------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 ---------------------IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 0134566677777788888888888888777664
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.11 E-value=2e-05 Score=67.62 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------Ccc
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN----EA----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPG------HCG 548 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 548 (660)
.+..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|...++++++..+. .+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444455555555555555444321 01 1345666777778888888888888887765211 134
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 549 NYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 549 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888999999888887754
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=4.1e-06 Score=82.48 Aligned_cols=147 Identities=11% Similarity=-0.001 Sum_probs=81.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
...|..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 456777788888889999999999988874 455432 22333333333221 1 136778888
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhCCChHHH
Q 048281 490 MLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIY-VAGGKYEEV 566 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 566 (660)
+|.+.|++++|+..+++... +.+...|..+..+|...|++++|+..|+++++++|+++..+..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999888887643 446778888888999999999999999999999998888888888774 445667777
Q ss_pred HHHHHHHHhC
Q 048281 567 LDIRHTMRQQ 576 (660)
Q Consensus 567 ~~~~~~~~~~ 576 (660)
...+++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877654
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=2.2e-06 Score=69.51 Aligned_cols=92 Identities=9% Similarity=-0.027 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 048281 458 SGFLSQGREFLPLMESRYG--VVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAE 533 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 533 (660)
.|++++|+..|+++.+. + -+.+...+..+..+|.+.|++++|...+++... +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777652 2 123346677788888888888888888877543 445778888889999999999999
Q ss_pred HHHHHHHhcCCCCcchH
Q 048281 534 IAAQRVFQLEPGHCGNY 550 (660)
Q Consensus 534 ~~~~~~~~~~p~~~~~~ 550 (660)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999988886544
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=5e-05 Score=77.75 Aligned_cols=189 Identities=7% Similarity=-0.128 Sum_probs=139.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--C---C---------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 048281 386 MDMYTKCGSMRDAQMVFTKMSK--K---D---------------VASWNIMILGYGMDGQGKEALDMFSCMCEAK-LKPD 444 (660)
Q Consensus 386 i~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 444 (660)
...+.+.|++++|.+.|..+.+ + + ..++..++..|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999987652 1 0 1247789999999999999999999887531 1122
Q ss_pred HH----HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-------
Q 048281 445 EV----TFVGVLSACSHSGFLSQGREFLPLMESRY---GVVP-TIEHYTCVIDMLGRAGQLNEAYELALAMPN------- 509 (660)
Q Consensus 445 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 509 (660)
.. +.+.+-..+...|+.++|..++....... +..+ ...++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 22233334556789999999998876421 2222 246788999999999999999999876421
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 510 EA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE---PGH----CGNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 510 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
++ ...++..++..|...|++++|...+++++... ++. ...+..++.++...|++++|...+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 12 24578889999999999999999999998763 222 2356677888889999999998887664
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=1.2e-05 Score=79.06 Aligned_cols=150 Identities=7% Similarity=-0.043 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSK--KDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 456 (660)
...+..+...+.+.|++++|...|++... |+.. .+...++..++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 67788889999999999999999998652 2221 1223333444433221 136777888899
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHHcCChHHHH
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAA-SRLHGNTDLAE 533 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~g~~~~A~ 533 (660)
+.|++++|+..++.+++. .+.+...|..+..+|...|++++|...|++... +.+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999873 345678899999999999999999999999765 3345566666655 34456788899
Q ss_pred HHHHHHHhcCCCCc
Q 048281 534 IAAQRVFQLEPGHC 547 (660)
Q Consensus 534 ~~~~~~~~~~p~~~ 547 (660)
..|++++...|+++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999999988765
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=1.6e-05 Score=62.15 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 510 EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+.++..|..+..+|...|++++|+..|+++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999999999999999999999988664
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00016 Score=76.08 Aligned_cols=171 Identities=8% Similarity=-0.069 Sum_probs=140.1
Q ss_pred cCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 392 CGSMRDAQMVFTKMS---KKDVASWNIMILGYGMDGQ----------GKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 392 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
....++|.+.++.+. ..+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-...+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334567888888876 3456788887777777777 899999999999864 33566777777778888
Q ss_pred C--CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc-------
Q 048281 459 G--FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG-QLNEAYELALAMPN--EANPVVWRTLLAASRLH------- 526 (660)
Q Consensus 459 g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~------- 526 (660)
+ +++++++.++.+.+. .+-+...|+.-..++.+.| .++++++.++++.. +.+...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 679999999999983 4557788888888888889 89999999999765 45788999988887774
Q ss_pred -------CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHH
Q 048281 527 -------GNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEE 565 (660)
Q Consensus 527 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 565 (660)
+.++++++.+.++++.+|++..+|..+..++.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999988655
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.5e-06 Score=69.65 Aligned_cols=93 Identities=15% Similarity=-0.029 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------cchHH
Q 048281 480 TIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH------CGNYV 551 (660)
Q Consensus 480 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 551 (660)
+...+..+...+.+.|++++|.+.|++... +.+...|..+..++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888888999999888887543 4567889999999999999999999999999999988 66777
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 048281 552 LMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 552 ~l~~~~~~~g~~~~a~~~~~~ 572 (660)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888887777766554443
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=2.8e-05 Score=66.71 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEAKLK-PD----EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEH 483 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 483 (660)
+..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444455555555555555554432100 11 124444555556666666666666665442111111 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 048281 484 YTCVIDMLGRAGQLNEAYELALAMPN----EA----NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 484 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 543 (660)
+..+...+...|++++|.+.+++... .. ...++..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666667777777777776665421 11 13466777888888999999999998887763
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.00 E-value=4.2e-05 Score=78.68 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 513 PVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 513 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999999999999999999999999998753
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=3.4e-05 Score=76.74 Aligned_cols=114 Identities=6% Similarity=-0.067 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048281 445 EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASR 524 (660)
Q Consensus 445 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 524 (660)
...+..+...+.+.|++++|+..|+++++.. +.. . .....+++.. ..+.+..+|..+..+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~------~----~~~~~~~~~~-----~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS------R----AAAEDADGAK-----LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH------H----HHSCHHHHGG-----GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC------c----cccChHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777776520 000 0 0011111111 01235678899999999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998774
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=2.4e-05 Score=59.66 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYV 558 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 558 (660)
...+..+...+...|++++|...+++... +.+...|..+..++...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667777778888888888888876533 3466788888889999999999999999999999998888888888876
Q ss_pred hCC
Q 048281 559 AGG 561 (660)
Q Consensus 559 ~~g 561 (660)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=3.8e-05 Score=78.84 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=90.1
Q ss_pred HhccCCHHHHHHHHHHhHHhc--CC---CCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC---------CCCH-HHHHH
Q 048281 455 CSHSGFLSQGREFLPLMESRY--GV---VPT-IEHYTCVIDMLGRAGQLNEAYELALAMPN---------EANP-VVWRT 518 (660)
Q Consensus 455 ~~~~g~~~~a~~~~~~~~~~~--~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~ 518 (660)
+..+|++++|..++++..+.. -+ .|+ ..+++.|..+|...|++++|..++++... .|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776665421 11 122 35677788888888888888777766421 2333 47888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc-----CCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 519 LLAASRLHGNTDLAEIAAQRVFQL-----EPGHCG---NYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 519 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
|...|...|++++|+.++++++++ .|++|. ....+..++.++|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999873 777764 44578888999999999999999997643
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=3.1e-05 Score=65.12 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCcch
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMP--------NEA-NPVVW----RTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGN 549 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 549 (660)
.|..+..++.+.|++++|+..+++.. ..| +...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555555555555555554422 134 45688 899999999999999999999999999988765
Q ss_pred HHHH
Q 048281 550 YVLM 553 (660)
Q Consensus 550 ~~~l 553 (660)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.91 E-value=2e-05 Score=63.50 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=64.5
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 500 AYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 500 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
|.+.|++... +.+...|..+...|...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555554322 4567788899999999999999999999999999999999999999999999999999999988664
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00013 Score=74.46 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=120.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 048281 417 ILGYGMDGQGKEALDMFSCMCEAKLKPD----------------EVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPT 480 (660)
Q Consensus 417 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 480 (660)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987532211 124677888999999999999999998764333333
Q ss_pred h----HHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Q 048281 481 I----EHYTCVIDMLGRAGQLNEAYELALAMPN-------EA-NPVVWRTLLAASRLHGNTDLAEIAAQRVFQL------ 542 (660)
Q Consensus 481 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 542 (660)
. .+.+.+...+...|+.++|..+++.... .+ -..++..+...+...|++++|...++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2344455566678999999998876431 22 2457888999999999999999999998774
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 543 EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 543 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
.|.....+..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222346788999999999999999999998754
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.82 E-value=1.1e-05 Score=67.80 Aligned_cols=85 Identities=7% Similarity=-0.033 Sum_probs=67.6
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC
Q 048281 493 RAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGN----------TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG 560 (660)
Q Consensus 493 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 560 (660)
+.+.+++|.+.+++... +.+...|..+..++...++ +++|+..|+++++++|+++.+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 45556667766666432 4466677777777776665 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 048281 561 G-----------KYEEVLDIRHTMRQQN 577 (660)
Q Consensus 561 g-----------~~~~a~~~~~~~~~~~ 577 (660)
| ++++|++.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998753
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00029 Score=58.74 Aligned_cols=111 Identities=5% Similarity=-0.142 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 048281 460 FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRL----HGNTDLAEIA 535 (660)
Q Consensus 460 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 535 (660)
++++|.++|+...+. + .|+.. |..+|...+.+++|.+.|++.....++..+..|...|.. .++.++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455555566555552 3 22222 555555555566666666655444566666666666666 5677777777
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 048281 536 AQRVFQLEPGHCGNYVLMSNIYVA----GGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 536 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 578 (660)
|+++.+. .++..+..|+.+|.. .+++++|.+++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7776664 455667777777776 6777777777777766553
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.72 E-value=0.0002 Score=54.57 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 510 EANPVVWRTLLAASRLHGN---TDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
+.++..+..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577888888888876665 79999999999999999999999999999999999999999999988654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.62 E-value=0.00012 Score=75.27 Aligned_cols=115 Identities=13% Similarity=-0.007 Sum_probs=88.4
Q ss_pred HHhhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCc---chHH
Q 048281 490 MLGRAGQLNEAYELALAMPN---------EAN-PVVWRTLLAASRLHGNTDLAEIAAQRVFQL-----EPGHC---GNYV 551 (660)
Q Consensus 490 ~~~~~g~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~ 551 (660)
.+..+|++++|+.++++... .|+ ..+++.|..+|...|++++|+.+++++++. .|++| .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45688999999988876421 233 357899999999999999999999999874 56665 4678
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Q 048281 552 LMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLRE 622 (660)
Q Consensus 552 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 622 (660)
.|+.+|..+|++++|..++++..+--.. .-...||...+....+.+...++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988552110 1125899999988888776655544
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00018 Score=57.12 Aligned_cols=66 Identities=9% Similarity=0.005 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
+...|..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998753
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.00085 Score=55.79 Aligned_cols=111 Identities=11% Similarity=-0.044 Sum_probs=93.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhh----cCCHHH
Q 048281 424 GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGR----AGQLNE 499 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 499 (660)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 44444 566677778889999999999873 456788888888888 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 048281 500 AYELALAMPNEANPVVWRTLLAASRL----HGNTDLAEIAAQRVFQLE 543 (660)
Q Consensus 500 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 543 (660)
|.+.|++.....++..+..|...|.. .++.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987767788899999999998 899999999999998874
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.00021 Score=72.18 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCc---chH
Q 048281 489 DMLGRAGQLNEAYELALAMPN-------EAN---PVVWRTLLAASRLHGNTDLAEIAAQRVFQL-----EPGHC---GNY 550 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~ 550 (660)
.-+.+.|++++|+.++++... +.+ ..+++.|+.+|...|++++|+.+++++++. .|++| ..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334567778888777765421 112 247888889999999999999999998873 45554 467
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048281 551 VLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLR 621 (660)
Q Consensus 551 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 621 (660)
..|+.+|..+|++++|..++++..+--. ..-...||...+....+.+...+|+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999998855211 1112589999999999988877765
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.52 E-value=0.00027 Score=56.61 Aligned_cols=82 Identities=15% Similarity=0.027 Sum_probs=58.5
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048281 463 QGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVF 540 (660)
Q Consensus 463 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 540 (660)
.|...++.+.+ ..+.+...+..+...|...|++++|...+++... +.+...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666654 2334556777777777788888888877776543 3456678888888888888888888888888
Q ss_pred hcCCCC
Q 048281 541 QLEPGH 546 (660)
Q Consensus 541 ~~~p~~ 546 (660)
++.|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877643
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.51 E-value=0.0016 Score=68.57 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=121.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHh
Q 048281 424 GQGKEALDMFSCMCEAKLKPDE-VTFVGVLSACSHSGF----------LSQGREFLPLMESRYGVVPTIEHYTCVIDMLG 492 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 492 (660)
...++|++.++++... .|+. ..|+.--.++...|+ ++++++.++.+.+ ..+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3457889999999985 5654 445554445555555 8999999999997 35567788888888888
Q ss_pred hcC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhC-------
Q 048281 493 RAG--QLNEAYELALAMPN--EANPVVWRTLLAASRLHG-NTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAG------- 560 (660)
Q Consensus 493 ~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 560 (660)
+.| +++++++.++++.. +.+..+|+.-..++...| .++++++.+.++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 77999999999765 567889999999999999 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhC
Q 048281 561 -------GKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 561 -------g~~~~a~~~~~~~~~~ 576 (660)
++++++.+++++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5678898888877653
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.49 E-value=8.4e-05 Score=62.34 Aligned_cols=50 Identities=18% Similarity=-0.005 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCc
Q 048281 498 NEAYELALAMPN--EANPVVWRTLLAASRLH-----------GNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 498 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 547 (660)
++|+..|++... +.+..+|..+..+|... |++++|++.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 456666655432 33455666666666655 589999999999999999874
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.0004 Score=52.55 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+...|..+...+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999998764
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.34 E-value=0.00015 Score=71.09 Aligned_cols=238 Identities=11% Similarity=0.110 Sum_probs=165.5
Q ss_pred ChhHHHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 048281 66 SPLSITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCC 145 (660)
Q Consensus 66 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 145 (660)
.+.+|..|..+..+.|++.+|++.|= .-.|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 46778888888888888888877665 334666788889999999999998888877666533 3344457888898
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC------------------------CCCch
Q 048281 146 DVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP------------------------LRDVV 201 (660)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 201 (660)
+.+++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888876544432 24666666777777888888888888887664 12677
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 048281 202 LWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYG 281 (660)
Q Consensus 202 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 281 (660)
+|..+-.+|...+.+.-|.-.--.++ +.|| .+..++..|-..|.+++-..+++..... -.....+++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 89999999999998887755544443 2222 2334566677888888888777665421 1346668888888888
Q ss_pred cCCCHHHHHHHHHhcCC----C-------ChhhHHHHHHHHHHcCChHHHHH
Q 048281 282 KGKCVGEALEIFEMMEE----K-------DIFSWNSIMTVHEQCGNHDGTLR 322 (660)
Q Consensus 282 ~~~~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~ 322 (660)
+-. +++-.+.++..-. | ....|.-++-.|++-.+++.|..
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 863 4555544443322 2 34468888888888888887654
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.0003 Score=70.97 Aligned_cols=102 Identities=9% Similarity=0.005 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHhCC-------C--CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCc---chHHHHHH
Q 048281 494 AGQLNEAYELALAMP-------N--EANP-VVWRTLLAASRLHGNTDLAEIAAQRVFQL-----EPGHC---GNYVLMSN 555 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~-------~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~ 555 (660)
.|++++|+.++++.. . .|+. .+++.|..+|...|++++|+.+++++++. .|++| ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666665432 1 2232 47888899999999999999999998873 55555 46888999
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHH
Q 048281 556 IYVAGGKYEEVLDIRHTMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAEL 613 (660)
Q Consensus 556 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (660)
+|..+|++++|..++++..+--.. .-...||...++...+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHH
Confidence 999999999999999988552110 1124788877766655
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.24 E-value=0.00098 Score=55.19 Aligned_cols=66 Identities=6% Similarity=-0.075 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 510 EANPVVWRTLLAASRLHG---NTDLAEIAAQRVFQLE-P-GHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
+++..+...+..++.+.+ +.++++.+++.+++.+ | ++.+.+..|+-.|.+.|++++|+++++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 356666666677777666 5557777777777766 5 3456677777777777777777777777766
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.21 E-value=0.0012 Score=50.94 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 048281 487 VIDMLGRAGQLNEAYELALAMPN--EANPV-VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKY 563 (660)
Q Consensus 487 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 563 (660)
....+.+.|++++|.+.+++... +.+.. .|..+..++...|++++|+..|+++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 45567788888888888887643 34567 88889999999999999999999999999998776532 455
Q ss_pred HHHHHHHHHH
Q 048281 564 EEVLDIRHTM 573 (660)
Q Consensus 564 ~~a~~~~~~~ 573 (660)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666665554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.10 E-value=0.012 Score=56.88 Aligned_cols=138 Identities=13% Similarity=0.009 Sum_probs=67.6
Q ss_pred CCCHhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cC--CHHHH---HHHHHHhH
Q 048281 407 KKDVASWNIMILGYG--MDG---QGKEALDMFSCMCEAKLKPDE-VTFVGVLSACSH---SG--FLSQG---REFLPLME 472 (660)
Q Consensus 407 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g--~~~~a---~~~~~~~~ 472 (660)
..+..+|...+++.. ..+ ...+|+.+|++.++. .|+. ..+..+..++.. .+ ..... .+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 346777877776543 333 357899999999985 5653 344443333320 00 00010 11111110
Q ss_pred HhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 473 SRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 473 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
.....+.+..+|..+.-.+...|++++|...++++.. .|+...|..+...+...|+.++|...+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0001233444555555444445555555555555432 3444444455555555555555555555555555543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.06 E-value=0.0013 Score=50.74 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=54.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPGHCG-NYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
.....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456788899999999999999999999999 99999999999999999999999998753
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.00 E-value=0.0031 Score=48.80 Aligned_cols=63 Identities=8% Similarity=-0.068 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 410 VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 410 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
...|..+..+|...|++++|+..|++.++.. +.+...|..+..++...|++++|.+.+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555555532 12233444555555555555555555555543
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.90 E-value=0.085 Score=41.84 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=104.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 048281 420 YGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE 499 (660)
Q Consensus 420 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 499 (660)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467788888888888763 35666777777666777777777888877553222 24555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 048281 500 AYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVR 579 (660)
Q Consensus 500 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 579 (660)
...-+-.+. .+..-.+..+......|+.++-.+++..++.-.|.+|+....++.+|.+.|+..+|.+++++..+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555443 244556667788889999999999999977777778899999999999999999999999999999974
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.0031 Score=63.57 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHhHHhc--CCCC---C-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC---------CCCH-HHHHHHHH
Q 048281 458 SGFLSQGREFLPLMESRY--GVVP---T-IEHYTCVIDMLGRAGQLNEAYELALAMPN---------EANP-VVWRTLLA 521 (660)
Q Consensus 458 ~g~~~~a~~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~~~l~~ 521 (660)
.|++++|..++++..+.. -+.| + ..+++.|..+|...|++++|+.++++... .|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677777766655421 1112 2 35677778888888888888777766431 2443 47888999
Q ss_pred HHHHcCChHHHHHHHHHHHhc-----CCCCcch
Q 048281 522 ASRLHGNTDLAEIAAQRVFQL-----EPGHCGN 549 (660)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 549 (660)
.|...|++++|+.++++++++ .|++|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999998884 7777654
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.76 E-value=0.0062 Score=61.42 Aligned_cols=98 Identities=13% Similarity=-0.016 Sum_probs=68.2
Q ss_pred HHHhccCCHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC---------CCCH-HHH
Q 048281 453 SACSHSGFLSQGREFLPLMESRY--GVVPT----IEHYTCVIDMLGRAGQLNEAYELALAMPN---------EANP-VVW 516 (660)
Q Consensus 453 ~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~-~~~ 516 (660)
..+.+.|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++.. .|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34555677777777777765421 11122 35677788888888888888887776431 2333 478
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCcchH
Q 048281 517 RTLLAASRLHGNTDLAEIAAQRVFQL-----EPGHCGNY 550 (660)
Q Consensus 517 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 550 (660)
+.|...|...|++++|+.++++++++ .|++|.+-
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88999999999999999999998873 78776543
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.71 E-value=0.017 Score=55.77 Aligned_cols=133 Identities=20% Similarity=0.181 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHH--hccC---CHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHhh---cC-----C---HHHHHHH
Q 048281 441 LKPDEVTFVGVLSAC--SHSG---FLSQGREFLPLMESRYGVVPT-IEHYTCVIDMLGR---AG-----Q---LNEAYEL 503 (660)
Q Consensus 441 ~~p~~~~~~~ll~~~--~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 503 (660)
.+.+...|..++++. ...+ +..+|..+|+++++ ..|+ ...|..+.-+|.- .+ . +..+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 355667777777654 3333 45789999999986 3454 3444444444321 11 1 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 504 ALAMPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 504 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
...+.. +.++.+|..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 222222 567788888888888889999999999999999974 5678899999999999999999999987754
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.52 E-value=0.0089 Score=46.56 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMPN---------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLM 553 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 553 (660)
-+..|...+.+.|+++.|...++.... .+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 344455555555555555555544221 23456888999999999999999999999999999987665444
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.46 E-value=0.00045 Score=67.85 Aligned_cols=237 Identities=11% Similarity=0.073 Sum_probs=135.3
Q ss_pred hhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 048281 169 VYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMM 248 (660)
Q Consensus 169 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 248 (660)
+.+|+.|..++.+.+++.+|.+.| ++..|+..|..+|.+..+.|.+++-++.+.-.++..-.| ..=+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence 445666666666666666665544 223355566666777667777777666666555442222 3334566666666
Q ss_pred CCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCC------------------------CChhhH
Q 048281 249 GFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEE------------------------KDIFSW 304 (660)
Q Consensus 249 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~ 304 (660)
+++.+-+.++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 6655543332 124444455556666666666666666655431 367788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHH
Q 048281 305 NSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNA 384 (660)
Q Consensus 305 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (660)
-.+-.+|...+.+.-|.-.--.+. +.||. ...++..|...|.+++-..+++......-.. ..+++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglErAH---------mGmFTE 268 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLERAH---------MGMFTE 268 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC---------HHHHHH
T ss_pred HHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchh---------HHHHHH
Confidence 888888888888776544332322 12221 2233445666777777666666554222122 667777
Q ss_pred HHHHHHhcCCHHHHHHHHhc----CCCC-------CHhHHHHHHHHHHhcCChHHHHH
Q 048281 385 LMDMYTKCGSMRDAQMVFTK----MSKK-------DVASWNIMILGYGMDGQGKEALD 431 (660)
Q Consensus 385 li~~~~~~g~~~~A~~~~~~----~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 431 (660)
|.-.|+|- +.++-.+.++. +.-| ....|.-++-.|.+..+++.|..
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 77777764 33333333332 2222 34568888888888888876653
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.42 E-value=0.011 Score=54.64 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCC-CCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhC-CChHH
Q 048281 497 LNEAYELALAMPN-EAN---PVVWRTLLAASRLH-----GNTDLAEIAAQRVFQLEPGH-CGNYVLMSNIYVAG-GKYEE 565 (660)
Q Consensus 497 ~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 565 (660)
...|...+++..+ .|+ -..|..+...|.+. |+.++|++.|+++++++|+. ..++..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4555555655433 444 45788888888884 99999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 048281 566 VLDIRHTMRQQNVRKNP 582 (660)
Q Consensus 566 a~~~~~~~~~~~~~~~~ 582 (660)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999987766434
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.29 E-value=0.023 Score=42.97 Aligned_cols=69 Identities=9% Similarity=-0.118 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 478 VPTIEHYTCVIDMLGRAGQ---LNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 478 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
+.+...+..+..++...++ .++|..++++... +.++..+..+...+...|++++|+..++++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456677777777755444 6888888877543 4566788888888889999999999999999988873
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.19 E-value=0.12 Score=57.34 Aligned_cols=155 Identities=11% Similarity=0.043 Sum_probs=99.6
Q ss_pred HHHHcCCChhHHHH-HHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 048281 107 SGFYSNDFAFKGLD-FFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFM 185 (660)
Q Consensus 107 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 185 (660)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. . ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445677777766 442211 122236677777778888888776431 1 1113445678999
Q ss_pred HHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHHHhC
Q 048281 186 EEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVVKMG 265 (660)
Q Consensus 186 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 265 (660)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999887764 557899999999999999999999998743 4455555555676666655555555544
Q ss_pred CCCCchHHHHHHHHHHcCCCHHHHHHHHHhc
Q 048281 266 YDSGVPVMNALIDMYGKGKCVGEALEIFEMM 296 (660)
Q Consensus 266 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 296 (660)
-++.-..+|.+.|++++|++++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233444566677777777765543
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.10 E-value=0.6 Score=51.57 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048281 387 DMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
......|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567888888888877663 567888899999999999999988887753 2234444444666666555
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 048281 467 FLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAM 507 (660)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 507 (660)
+-+.+... | -++....+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 54444432 2 1233444556667777776666554
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.08 E-value=0.029 Score=46.35 Aligned_cols=85 Identities=11% Similarity=-0.069 Sum_probs=55.6
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCC-C-C--CHHHHHHHHHHHHHcCChHHHHH
Q 048281 462 SQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAG---QLNEAYELALAMPN-E-A--NPVVWRTLLAASRLHGNTDLAEI 534 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~g~~~~A~~ 534 (660)
..+.+-|.+..+. + .++..+.-.+..++.+.+ +.++++.++++... . | ....+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444441 2 255555555666666665 44466666655432 2 2 24566677888899999999999
Q ss_pred HHHHHHhcCCCCcc
Q 048281 535 AAQRVFQLEPGHCG 548 (660)
Q Consensus 535 ~~~~~~~~~p~~~~ 548 (660)
.++.+++.+|++..
T Consensus 93 y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHCTTCHH
T ss_pred HHHHHHhcCCCCHH
Confidence 99999999998853
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.05 E-value=0.024 Score=45.07 Aligned_cols=89 Identities=11% Similarity=-0.084 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHcCCh
Q 048281 457 HSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE---AYELALAMPNE--A--NPVVWRTLLAASRLHGNT 529 (660)
Q Consensus 457 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~ 529 (660)
....+..+.+-|...... +. ++..+--.+..++.+..+..+ ++.+++.+... | .....-.|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 333445555555555442 33 555555566666666665544 66666664432 1 112334455566666777
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 048281 530 DLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 530 ~~A~~~~~~~~~~~p~~~ 547 (660)
++|.+.++.+++.+|++.
T Consensus 91 ~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 777777777777666664
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.61 E-value=0.32 Score=39.26 Aligned_cols=91 Identities=8% Similarity=-0.041 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCcEE
Q 048281 510 EANPVVWRTLLAASRLHGN---TDLAEIAAQRVFQLEPG-HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRKNPGCS 585 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 585 (660)
.++..+-..+.+++.+..+ ..+++.+++.+....|. ..+....|+-.+.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566666666777776664 34677777777776663 3455667777788888888888888887763
Q ss_pred EEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCcc
Q 048281 586 WIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGDC 626 (660)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~ 626 (660)
.|...+..++-..+..+|.+.|..
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 233344445544556777777654
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.40 E-value=1.1 Score=38.06 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=60.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 048281 387 DMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGRE 466 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 466 (660)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776655 3566777777777777777777777776543 2233333444566655554
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 467 FLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
+-+....+ | -++.....+.-.|+++++.+++.+..
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44443332 1 13333444555667777766666544
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.87 Score=38.62 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=58.0
Q ss_pred HhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHH
Q 048281 178 TYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVV 257 (660)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 257 (660)
....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344566777776666554 3455677777777777777777777766532 33444444555555554444
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhc
Q 048281 258 HGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMM 296 (660)
Q Consensus 258 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 296 (660)
-+.....| -++.-...+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444333 1333444455566666666666544
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.00 E-value=0.094 Score=40.55 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 048281 512 NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLE-------PGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQ 576 (660)
Q Consensus 512 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 576 (660)
+..-+..++..+...|+++.|..-++++++.. +..+..+..|+.+|.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556788999999999999999999998862 234567899999999999999999999999763
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.96 E-value=4.3 Score=42.58 Aligned_cols=114 Identities=12% Similarity=-0.005 Sum_probs=68.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHH
Q 048281 424 GQGKEALDMFSCMCEAKLKPDEVTF----VGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNE 499 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 499 (660)
.+.+.|..+|......+ ..+.... ..+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876543 2233222 22222334445355666666665432 2333334445555567899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 500 AYELALAMPNEA-N-PVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 500 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
|...|+.|...+ + ....-=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999887632 2 22223345567778898899888888765
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.1 Score=55.81 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 520 LAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 520 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
...|...|+++.|+.+.++++...|.+..+|..|+.+|...|+|+.|+=.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445778899999999999999999999999999999999999999999999987
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.87 E-value=0.23 Score=45.91 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHhhc-----CCHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHHc-CC
Q 048281 461 LSQGREFLPLMESRYGVVPT---IEHYTCVIDMLGRA-----GQLNEAYELALAMPN-EA--NPVVWRTLLAASRLH-GN 528 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~-g~ 528 (660)
...|...++++++ +.|+ -..|..|...|.+. |+.++|.+.|++... .| +..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3455666666654 5566 46788888888884 899999999988654 34 367777888887774 89
Q ss_pred hHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 048281 529 TDLAEIAAQRVFQLEPGH-CGNYVLMSNIYVAGGKYEEVLDIRHTMR 574 (660)
Q Consensus 529 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 574 (660)
.++|.+.+++++...|.. |. ..+.+ .++-.+|..++.++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~lan----~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLLV----ILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHHH----HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHHH----HHHHHHHHHHHHHhH
Confidence 999999999999987753 32 22333 333456666665543
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.81 E-value=0.43 Score=37.88 Aligned_cols=84 Identities=8% Similarity=-0.088 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHHhcCCCC--ChHHHHHHHHHHhhcCCH
Q 048281 423 DGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQ---GREFLPLMESRYGVVP--TIEHYTCVIDMLGRAGQL 497 (660)
Q Consensus 423 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 497 (660)
......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++.+.+. -.| .......|.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhH
Confidence 3344555566666655553 666666667777777765554 78888877663 223 334455666777888888
Q ss_pred HHHHHHHHhCCC
Q 048281 498 NEAYELALAMPN 509 (660)
Q Consensus 498 ~~A~~~~~~~~~ 509 (660)
++|.+.++.+..
T Consensus 91 ~~A~~~~~~lL~ 102 (126)
T 1nzn_A 91 EKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877643
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.90 E-value=0.3 Score=38.87 Aligned_cols=65 Identities=8% Similarity=-0.067 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 048281 511 ANPVVWRTLLAASRLHGN---TDLAEIAAQRVFQLEPG-HCGNYVLMSNIYVAGGKYEEVLDIRHTMRQ 575 (660)
Q Consensus 511 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 575 (660)
|++.+--.+.+++.+..+ ..+++.+++.+.+..|. ..+.+..|+-.+.+.|++++|+++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455555555555555543 34566666666665553 234556666667777777777777766655
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.66 E-value=2.9 Score=42.06 Aligned_cols=251 Identities=8% Similarity=-0.012 Sum_probs=136.2
Q ss_pred CChhHHHHHHHHHHHh-----CCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCC-C--cccHHHHHH----HHHcCC
Q 048281 46 TNLQKGQEIHSYMLRT-----GIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEP-N--VFTYNAMIS----GFYSND 113 (660)
Q Consensus 46 ~~~~~a~~~~~~~~~~-----g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~li~----~~~~~~ 113 (660)
++++.|.+.+-.+.+. ....+......++..|.+.|+++...+.+. ...+. . -..-..+++ .+....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~-~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLT-LLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHH-HHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 6777777776666554 234456677888899999999988866554 21111 0 111222332 222222
Q ss_pred ChhH--HHHHHHHHHHCCCCCCc--------ccHHHHHHHHhhhCCHHHHHHHHHHHHHh--CCCCC---hhHHHHHHHH
Q 048281 114 FAFK--GLDFFNHMRQLGVLPDK--------YTFPCLIKCCCDVMAVLEVKKIHGLVFKL--GLDLD---VYIGSALVNT 178 (660)
Q Consensus 114 ~~~~--a~~~~~~m~~~~~~p~~--------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~---~~~~~~li~~ 178 (660)
..+. -..+.+.. ..+.... .....|...+-..|++.+|..++..+... |.... ...+...+..
T Consensus 109 ~~d~~~~~~~i~~l--~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLNTRISVIETI--RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHHHHHHHHHCC--SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2221 11111111 1122111 11245677788889999999998887653 22211 3466777788
Q ss_pred hHhcCChHHHHHHHccCCC-----C-C----chhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCChhhHH----HHHH
Q 048281 179 YLKCQFMEEALKVFEELPL-----R-D----VVLWNAMVNGYAQIGEFHKALEVFRRMSKE-GIWMSRFTVT----GVLS 243 (660)
Q Consensus 179 ~~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~t~~----~ll~ 243 (660)
|...+++..|..++.++.. + + ...+...+..+...+++.+|.+.|.+.... .+..|...+. .++.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 8888999888888776531 1 1 234566677778888888888887777542 1112222221 1122
Q ss_pred HHHccCCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcC--CCHHHHHHHHHhcCCC
Q 048281 244 ALIMMGFFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKG--KCVGEALEIFEMMEEK 299 (660)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~ 299 (660)
...-.+....-..+.....+....++...+..++.+|... .+++.+.+.|.....+
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 2222222222233333333333334566777777777654 3466666766665443
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.59 E-value=0.32 Score=39.61 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 494 AGQLNEAYELALAMPN--EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 494 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
.++.++|.++|+.+.. +.-..+|......-.++|+...|.+++.+++.+.|....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 3566666666665422 223667777777778888888888888888888776533
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.33 E-value=7.5 Score=36.57 Aligned_cols=170 Identities=11% Similarity=0.072 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCCCHHHHHHHHHHHhc
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRL----FDRMLSAGFQPDLVTFSTVLPACSH 348 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 348 (660)
|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 55667778889999999988654 24456667877666554 4555567889998888888877655
Q ss_pred ccchH-HHHHHHHHHH----HhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 048281 349 LAALM-HGRQIHGYIV----VNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMD 423 (660)
Q Consensus 349 ~~~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 423 (660)
...-+ .-.++.+.++ +.|-.+.| ++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~G------dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFG------DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTC------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 33111 1233334443 33332222 3788899999999999999999887633222344444444333332
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 048281 424 ---GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESR 474 (660)
Q Consensus 424 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 474 (660)
|...++ +...-..++ .|.-.|+...|..+++...+.
T Consensus 179 ~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 332221 111112222 244557888888888877653
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.30 E-value=7.8 Score=36.72 Aligned_cols=169 Identities=13% Similarity=0.085 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHH----HHHhhcCCCCCHHHHHHHHHHHhc
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLF----DRMLSAGFQPDLVTFSTVLPACSH 348 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 348 (660)
|.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 55667778889999999998644 244566677766655544 555667888998888888887765
Q ss_pred ccchH-HHHHHHHHHH----HhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 048281 349 LAALM-HGRQIHGYIV----VNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMD 423 (660)
Q Consensus 349 ~~~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 423 (660)
...-+ .-..+.+.++ +.|-.+.| |+.....+...|.+.+++.+|+..|-.-..+.+..+..|+.-+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~G------dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAG------DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTC------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 54311 1233333333 33322222 2778888999999999999999988532233335554444433333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 424 GQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 424 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
+... .++...-..++ -|...+++..|..+++...+
T Consensus 181 ~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 181 DESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp SCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 2211 11222222233 34445788888887776654
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.25 E-value=16 Score=40.14 Aligned_cols=264 Identities=10% Similarity=0.012 Sum_probs=124.4
Q ss_pred HHccCCchhHHHHHHHHHHhCCCCC--chHHHHHHHHHHcCCCHHHHHHHHHhcCC-CC----------hhhHHHHHHHH
Q 048281 245 LIMMGFFKNGRVVHGIVVKMGYDSG--VPVMNALIDMYGKGKCVGEALEIFEMMEE-KD----------IFSWNSIMTVH 311 (660)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~li~~~ 311 (660)
....|+.+++..++......+-..+ +..-..+.-+...+|.-+++..++..... .+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666666555443322110111 22223333444555555556665554332 22 11122233333
Q ss_pred HHcCC-hHHHHHHHHHHhhcCCCCCHHH--HH--HHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHH
Q 048281 312 EQCGN-HDGTLRLFDRMLSAGFQPDLVT--FS--TVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALM 386 (660)
Q Consensus 312 ~~~g~-~~~a~~~~~~m~~~g~~p~~~t--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 386 (660)
+-.|. -+++.+.+..+.... +... .. .+--.+...|+.+....++..+....-+ + ..-..++.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~--------vrR~aalg 531 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-N--------ITRGLAVG 531 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-H--------HHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-H--------HHHHHHHH
Confidence 33332 245566666655431 2111 11 1122234556666666666666542211 1 22223333
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-CCH-hHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 048281 387 DMYTKCGSMRDAQMVFTKMSK-KDV-ASWN---IMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFL 461 (660)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 461 (660)
-++.-.|+.+.+..+.+.+.. .+. .-|. ++..+|+..|+......++..+.... ..+......+.-++...|+.
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred HHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence 334456777777666666542 222 2232 33455667778766666777777631 22222222222345455666
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048281 462 SQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQL-NEAYELALAMPNEANPVVWRTLLAAS 523 (660)
Q Consensus 462 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~ 523 (660)
+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+.+..+...+|..+-...+.++
T Consensus 611 e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 611 TTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp SSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 666666665554 3345555445555555545443 56777777776555555444333333
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.29 E-value=10 Score=35.96 Aligned_cols=166 Identities=17% Similarity=0.099 Sum_probs=99.9
Q ss_pred HHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCcccHHHHHHHHh
Q 048281 70 ITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDF----FNHMRQLGVLPDKYTFPCLIKCCC 145 (660)
Q Consensus 70 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 145 (660)
+-++...|.+.+++++|++++- .-...+.+.|....|-++ ++...+.++++|......++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~------------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILA------------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHH------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456677888999999999876 223455566776655444 355566788888888777777776
Q ss_pred hhCC--HH---HHHHHHHHHHHhC--CCCChhHHHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhH
Q 048281 146 DVMA--VL---EVKKIHGLVFKLG--LDLDVYIGSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHK 218 (660)
Q Consensus 146 ~~~~--~~---~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 218 (660)
.... .+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+..|-.-..++...+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 5543 11 1222233333444 345677888888999999999999988843222233566555555554443322
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHHH
Q 048281 219 ALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIVV 262 (660)
Q Consensus 219 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 262 (660)
+--+ .-..++. |...+++..|..++....
T Consensus 186 ~dlf--------------iaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 APLY--------------CARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHH--------------HHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 2211 1222222 344567777777665544
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.83 E-value=0.85 Score=37.18 Aligned_cols=56 Identities=7% Similarity=-0.092 Sum_probs=44.1
Q ss_pred HcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 525 LHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
..+|.++|.++|+.++.+...-+-.|...+.--.++|++..|++++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 34799999999999988744334566666677778999999999999998876543
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.53 E-value=5.6 Score=31.74 Aligned_cols=84 Identities=17% Similarity=0.039 Sum_probs=59.0
Q ss_pred cCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchhHHHHHHHH
Q 048281 182 CQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKNGRVVHGIV 261 (660)
Q Consensus 182 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 261 (660)
||.+.....-+-.+. .+....+..+..+..+|.-++-.+++..+.. +.+|++..+..+..||.+.|+..++..++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444443332 2334556677888888998888888888654 35678888888888888888888888888888
Q ss_pred HHhCCC
Q 048281 262 VKMGYD 267 (660)
Q Consensus 262 ~~~g~~ 267 (660)
-+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777753
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.17 E-value=2.3 Score=35.40 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 048281 481 IEHYTCVIDMLGRAGQLNEAYELALAMPN 509 (660)
Q Consensus 481 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 509 (660)
.+.--.+..+|.+.|++++|+.+++.++.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34444466666677777777777766654
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.09 E-value=0.67 Score=45.82 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH-----hCCCccCCc
Q 048281 516 WRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMR-----QQNVRKNPG 583 (660)
Q Consensus 516 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 583 (660)
...++.++...|++++|+..++.++..+|-+-..|..+..+|.+.|+..+|++.|+.+. +.|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566777788888888888888888888887888888888999999999988888763 457776653
No 248
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=89.93 E-value=4.2 Score=37.58 Aligned_cols=51 Identities=6% Similarity=0.008 Sum_probs=26.8
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhCCCCChh---HHHHHHHHhHcCCChhHHHHHHc
Q 048281 37 ASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPL---SITSLINMYSKCCQMKYALFVFN 91 (660)
Q Consensus 37 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~ 91 (660)
+.|....+.|++ ++.+.+++.|..++.. .....+...+..|+.+-+..+++
T Consensus 7 ~~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 7 HLLIKAVQNEDV----DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCH----HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 345555566665 3444555566544322 11234455556677766666666
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.38 E-value=15 Score=39.31 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=45.0
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChHHHHHHHccCC
Q 048281 141 IKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFMEEALKVFEELP 196 (660)
Q Consensus 141 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 196 (660)
.+.|...|+++.|.++-++....- +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667889999999998888763 3356789999999999999999999998887
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.89 E-value=36 Score=37.43 Aligned_cols=250 Identities=10% Similarity=-0.051 Sum_probs=130.9
Q ss_pred HHcCCCHHHHHHHHHhcCCC----Ch--hhHHHHHHHHHHcCChHHHHHHHHHHhhcCC--CCC---HHH--HH--HHHH
Q 048281 280 YGKGKCVGEALEIFEMMEEK----DI--FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGF--QPD---LVT--FS--TVLP 344 (660)
Q Consensus 280 ~~~~~~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~---~~t--~~--~ll~ 344 (660)
....|+.++++.+++..... +. ..-..+.-+....|..+++..++.......- .-+ ... -. .+--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45567777888888776541 21 2223344455666666678887777664311 001 111 11 1111
Q ss_pred HHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-C--HhHHHHHHHHHH
Q 048281 345 ACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKK-D--VASWNIMILGYG 421 (660)
Q Consensus 345 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~ 421 (660)
++...++. .+...+..++...-... -...--+|...|.-.|+.+....++..+.+. + +.-.-.+.-++.
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~-------~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATS-------GEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHH-------HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHH-------HHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 22233333 33333333333211110 0122334455566678777777777654321 2 222233444556
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHH
Q 048281 422 MDGQGKEALDMFSCMCEAKLKPDEVTFV---GVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLN 498 (660)
Q Consensus 422 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 498 (660)
..|+.+.+..+.+.+.... .|. .-|. .+.-+|+..|+.....+++..+.. ....++.....+.-++...|+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 536 NYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCS
T ss_pred hCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHH
Confidence 7889888888888887631 222 2233 233467788898888779998876 33334444444444444567766
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCh-HHHHHHHHHHHh
Q 048281 499 EAYELALAMPNEANPVVWRTLLA--ASRLHGNT-DLAEIAAQRVFQ 541 (660)
Q Consensus 499 ~A~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~-~~A~~~~~~~~~ 541 (660)
.+.++++.+....|+.+-..... +....|+. ..+...+..+..
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 67777765554445544333333 33334433 566667776653
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.17 E-value=2.8 Score=31.38 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 425 QGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
+.-+..+-+..+....+.|++....+.+.+|.+.+++..|.++++.++.+.+. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45567777777778889999999999999999999999999999999875333 3456776664
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.84 E-value=2.5 Score=35.25 Aligned_cols=120 Identities=12% Similarity=0.055 Sum_probs=58.2
Q ss_pred CCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 048281 440 KLKPDEVT--FVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI-------EHYTCVIDMLGRAGQLNEAYELALAMPN- 509 (660)
Q Consensus 440 g~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 509 (660)
|+.|.... +..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++...
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44454432 3333455666677777776666655432233331 2445556666666666666666655211
Q ss_pred ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 048281 510 ------EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTM 573 (660)
Q Consensus 510 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 573 (660)
.+.. ..++. . ...... -.. .+.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~--~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKV--RPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCc--ccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111 00000 0 000000 000 1223356678999999999999999999876
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.74 E-value=17 Score=33.36 Aligned_cols=208 Identities=10% Similarity=0.015 Sum_probs=110.5
Q ss_pred HHHHHHhHcCCChhHHHHHHccCCCCCCcc----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHH
Q 048281 71 TSLINMYSKCCQMKYALFVFNNLSCEPNVF----TYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCC 144 (660)
Q Consensus 71 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~ 144 (660)
+..+...++.|+++....+++ ....++.. -+ +.+...+..|+.+ +++.+.+.|..|+... -.+.+...
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHH-cCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 445666778899999999988 54443322 22 3444455566654 4555556676655321 12334445
Q ss_pred hhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHHHHHHccCCCCCch-------------hHHHHHHH
Q 048281 145 CDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEALKVFEELPLRDVV-------------LWNAMVNG 209 (660)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~ 209 (660)
+..|+.+ +++.+++.|..++.. .....+...+..|+.+-+..+++.-...+.. .+ +.+..
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~ 154 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMD 154 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHH
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHH
Confidence 5667765 445555667655432 1223444556778888877777765433211 11 22333
Q ss_pred HHhCCChhHHHHHHHHHHHC-CCCCChh---hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchH--HHHHHHHHHcC
Q 048281 210 YAQIGEFHKALEVFRRMSKE-GIWMSRF---TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPV--MNALIDMYGKG 283 (660)
Q Consensus 210 ~~~~~~~~~A~~~~~~m~~~-~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 283 (660)
.+..|+.+ +++.+.+. |..++.. ..+. +...+..++......+.+.+.+.|..++... -.+.+...++.
T Consensus 155 A~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVE----VLKILLDEMGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHH----HHHHHHHTSCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHH----HHHHHHHhcCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 44455544 33444443 4444322 2222 3333445555555677777777776654431 12334445556
Q ss_pred CCHHHHHHHHH
Q 048281 284 KCVGEALEIFE 294 (660)
Q Consensus 284 ~~~~~A~~~~~ 294 (660)
|+.+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 66666666665
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.92 E-value=6.8 Score=38.51 Aligned_cols=72 Identities=10% Similarity=0.011 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCChHHHH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMES----RYGVVPTIEHYT 485 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~ 485 (660)
...++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|++.|+.+.+ .+|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677778888999888888887753 45777888889999999999999888888654 358888876543
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.69 E-value=9.3 Score=28.62 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048281 114 FAFKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVN 177 (660)
Q Consensus 114 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (660)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++-++..- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 334566666777777778888888888888888888888888888776543 222344555443
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.36 E-value=27 Score=32.74 Aligned_cols=167 Identities=8% Similarity=0.031 Sum_probs=97.4
Q ss_pred HHHHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHHc
Q 048281 172 GSALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEV----FRRMSKEGIWMSRFTVTGVLSALIM 247 (660)
Q Consensus 172 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~~~ 247 (660)
|.++..-|.+.+++++|.+++. .-...+.+.|+...|-++ ++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4455566777788888877642 223345556666555543 4555567788888777777777665
Q ss_pred cCCch-hHHHHHHHHHHh----C--CCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CCh
Q 048281 248 MGFFK-NGRVVHGIVVKM----G--YDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQC---GNH 317 (660)
Q Consensus 248 ~~~~~-~a~~~~~~~~~~----g--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 317 (660)
...-+ .-.++.+.+++. | ...++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43222 123444444433 3 2246778888999999999999999988633323455555555444443 332
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 048281 318 DGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVV 364 (660)
Q Consensus 318 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 364 (660)
.+ +|.+.-..++. +.-.+++..|..+++...+
T Consensus 185 ~e--------------~dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 ST--------------VAEFFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH--------------HHHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred ch--------------HHHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 22 12222223332 3456778888877776543
No 257
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.53 E-value=21 Score=31.66 Aligned_cols=150 Identities=7% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHhHcCCChhHHHHHHccCCCCCCcc---cHHHHHHHHHcC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPL--SITSLINMYSKCCQMKYALFVFNNLSCEPNVF---TYNAMISGFYSN 112 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~li~~~~~~ 112 (660)
.|...+..|+.+....+.+.+.+.|..++.. .....+...+..|+.+-+..+++ ....++.. .++ .+...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t-~l~~A~~~ 89 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQT-AAHLACEH 89 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCC-HHHHHHHc
Confidence 4555566788877777777777777554432 12234555566788887777777 44433322 222 33334456
Q ss_pred CChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh---HHHHHHHHhHhcCChH
Q 048281 113 DFAFKGLDFFNHMRQLGVLPDK---YTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY---IGSALVNTYLKCQFME 186 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~ 186 (660)
|+.+-...+++.....++.++. .-. +.+...+..|+.+ +++.+++.|..++.. .....+...++.|+.+
T Consensus 90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 90 RSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp TCHHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 6665555444443321122221 122 2233344455543 344445556554432 1223344445556665
Q ss_pred HHHHHHcc
Q 048281 187 EALKVFEE 194 (660)
Q Consensus 187 ~A~~~~~~ 194 (660)
-+..+++.
T Consensus 165 ~v~~Ll~~ 172 (241)
T 1k1a_A 165 MVQLLLQH 172 (241)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555544
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.34 E-value=13 Score=27.64 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=59.6
Q ss_pred CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 250 FFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++...+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45566666666655543 222222334567789999999999999999999999887654 66888888888878877
Q ss_pred cCCCCCHHHHH
Q 048281 330 AGFQPDLVTFS 340 (660)
Q Consensus 330 ~g~~p~~~t~~ 340 (660)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45555554
No 259
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=81.94 E-value=20 Score=33.14 Aligned_cols=142 Identities=10% Similarity=0.010 Sum_probs=63.4
Q ss_pred HHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHH
Q 048281 74 INMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVL 151 (660)
Q Consensus 74 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~ 151 (660)
+...+..|+.+.+..+++ ....++...-.+.+...+..|+.+- ++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN-AGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH-TTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 444455677777777666 3332222211223334445555443 333334455444321 112333344556554
Q ss_pred HHHHHHHHHHHhCCCCChh---HHHHHHHHhHhcCChHHHHHHHccCCCC-CchhHHHHHHHHHhCCChhHHHHHHH
Q 048281 152 EVKKIHGLVFKLGLDLDVY---IGSALVNTYLKCQFMEEALKVFEELPLR-DVVLWNAMVNGYAQIGEFHKALEVFR 224 (660)
Q Consensus 152 ~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 224 (660)
-++ .+++.|..++.. -+.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 110 ~v~----~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 110 TVK----LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHH----HHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 333 334445444322 1134444455666766666666554332 22122333344445555554444433
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.04 E-value=13 Score=27.72 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=59.8
Q ss_pred CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 250 FFKNGRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 250 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-+|... +.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45566666666555543 222222334567789999999999999999999999887654 67888888888888877
Q ss_pred cCCCCCHHHHH
Q 048281 330 AGFQPDLVTFS 340 (660)
Q Consensus 330 ~g~~p~~~t~~ 340 (660)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 45555554
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.02 E-value=6.2 Score=31.30 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 048281 425 QGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVID 489 (660)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 489 (660)
+.-+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34466677777777889999999999999999999999999999999875 3344556777664
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.95 E-value=13 Score=29.62 Aligned_cols=70 Identities=11% Similarity=0.015 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHhhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 479 PTIEHYTCVIDMLGRAGQL---NEAYELALAMPN-EA--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 479 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
|+..+--.+..++.++.+. .+++.+++++.. .| ....+--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3344433444444444433 234444444321 22 2345566677888888888899988988888888743
No 263
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=80.10 E-value=7.9 Score=34.50 Aligned_cols=47 Identities=6% Similarity=0.011 Sum_probs=25.7
Q ss_pred HhhccCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHhHcCCChhHHHHHHc
Q 048281 41 LCAHQTNLQKGQEIHSYMLRTGIIDSPL--SITSLINMYSKCCQMKYALFVFN 91 (660)
Q Consensus 41 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~ 91 (660)
..+..|++ ++.+.+++.|..++.. .....+...++.|+.+-+..+++
T Consensus 15 ~A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 15 KATQYGIY----ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCh----HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 34455665 4445555666544321 12234555566777777777766
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.52 E-value=41 Score=38.55 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccch
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAAL 352 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 352 (660)
...++..+.+.+..+.+.++..-.. .+...--.+...|...|++++|...|.+.-. |+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhh----------hh
Confidence 3345566666777777776655444 3444445677788889999999999976532 2222111000 00
Q ss_pred HHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhc----CCCCCH----hHHHHHHHHHHhcC
Q 048281 353 MHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTK----MSKKDV----ASWNIMILGYGMDG 424 (660)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g 424 (660)
.. ...+........+ -..-|..++..+.+.+.++.+.++-.. ....+. ..|..+..++...|
T Consensus 883 ~~----~~~~~~~~~~~~~------l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNL------LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp HH----HHHHHHTTTSCCS------SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cc----ccccccccccccc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 00 0001111111100 034556666666667766666554432 222221 26888899999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 048281 425 QGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQ 463 (660)
Q Consensus 425 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 463 (660)
++++|...+-.+..... -...+..|+..++..|..+.
T Consensus 953 ~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 953 KFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99999998888876533 34567777777777666554
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.38 E-value=22 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHhhcCCHH---HHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCc
Q 048281 479 PTIEHYTCVIDMLGRAGQLN---EAYELALAMPN-EA--NPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHC 547 (660)
Q Consensus 479 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 547 (660)
|+..+--.+..++.++.+.+ +++.+++.+.. .| .....--|.-++.+.|++++|.+..+.+++.+|+|.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 44444444444555544332 34444444321 22 233455667789999999999999999999999884
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.34 E-value=19 Score=28.60 Aligned_cols=61 Identities=10% Similarity=0.127 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 048281 116 FKGLDFFNHMRQLGVLPDKYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVN 177 (660)
Q Consensus 116 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 177 (660)
-+..+-++.+....+.|++......+++|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3456666677777788888888889999998899999998888877653 233445555543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.09 E-value=28 Score=31.66 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=63.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHhhc
Q 048281 419 GYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLMESRYGVVPTI----EHYTCVIDMLGRA 494 (660)
Q Consensus 419 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 494 (660)
...+.|+.++|++....-++.. +-|...=..++.-+|-.|++++|..-++...+ ..|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 3456677777777777766652 33445555566677777777777777766654 23332 234444332
Q ss_pred CCHHHHH-HHHHhCCC----CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhcCCCCcc
Q 048281 495 GQLNEAY-ELALAMPN----EANPVVWRTLLAAS--RLHGNTDLAEIAAQRVFQLEPGHCG 548 (660)
Q Consensus 495 g~~~~A~-~~~~~~~~----~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~ 548 (660)
|... ++|..-.. .....-...++.+. ...|+.++|..+-.++++.-|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 12221111 11122223344443 3457777777777777777665543
No 268
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=76.75 E-value=79 Score=33.28 Aligned_cols=81 Identities=11% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHhCc-cCCCCCCCCcchhHHHH
Q 048281 306 SIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIHGYIVVNGL-AKNGSCKDIDDVFMNNA 384 (660)
Q Consensus 306 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 384 (660)
.....+.-.|+++.|+..+-+. ...+.+.+...+..+.-.+- ...++ .... .+ ..-+..
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~ll----s~~~~~~---------~lN~ar 358 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTR----LTKKPKR---------DIRFAN 358 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------------------CHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccc----ccCCCcc---------cccHHH
Confidence 3556667789999999887754 24555666555554433321 11111 0000 01 233566
Q ss_pred HHHHHHh---cCCHHHHHHHHhcCC
Q 048281 385 LMDMYTK---CGSMRDAQMVFTKMS 406 (660)
Q Consensus 385 li~~~~~---~g~~~~A~~~~~~~~ 406 (660)
||..|.+ ..+..+|.+.|--+.
T Consensus 359 LI~~Yt~~F~~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 359 ILANYTKSFRYSDPRVAVEYLVLIT 383 (661)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Confidence 7777765 567777777766553
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.73 E-value=21 Score=26.59 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 048281 352 LMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALD 431 (660)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 431 (660)
.++|..|-+.+...+. . ..+--.-+..+...|++++|..+.+....||...|-+|.. .+.|..+++..
T Consensus 22 HqEA~tIAdwL~~~~~-~---------E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ-D---------EAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp HHHHHHHHHHHHHTTC-H---------HHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-H---------HHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 4556556555555543 1 2222333446678999999999999999999999987754 47788888888
Q ss_pred HHHHHHHcCCCCCHHHHHH
Q 048281 432 MFSCMCEAKLKPDEVTFVG 450 (660)
Q Consensus 432 ~~~~m~~~g~~p~~~~~~~ 450 (660)
.+.++...| .|....|..
T Consensus 90 rL~~la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFAA 107 (115)
T ss_dssp HHHHHHTCS-SHHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHHH
Confidence 888888776 555555443
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.46 E-value=24 Score=30.47 Aligned_cols=102 Identities=17% Similarity=0.157 Sum_probs=67.5
Q ss_pred HHHHHHHHhCCC-CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 048281 498 NEAYELALAMPN-EANPV---VWRTLLAASRLHGNTDLAEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRH 571 (660)
Q Consensus 498 ~~A~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 571 (660)
+.+.+.|..... +.|+. .|...+..| ..++...+..+|..+... ....+..|...+..+...|++.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444333 45554 344444433 144466888888888775 44566778888889999999999999999
Q ss_pred HHHhCCCccCCcEEEEEECCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCc
Q 048281 572 TMRQQNVRKNPGCSWIELKDGLHTFISSDRSHPEAKSIYAELHSLTARLREHGD 625 (660)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~ 625 (660)
.=.+.+.+|. .............|...++
T Consensus 140 ~GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 140 LGAENNCRPY-------------------------NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCC
Confidence 8887766542 3455556666777887776
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.27 E-value=60 Score=31.66 Aligned_cols=161 Identities=9% Similarity=-0.035 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCC--------CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHH--
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSK--------KDVASWNIMILGYGMDG-QGKEALDMFSCMCEAKLKPDEVTF-- 448 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~-- 448 (660)
.....|...|.+.|+.++..+++..... +..-....++..+.... ..+.-.++..+..+.. +-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556788899999999999888877652 12335566777776643 3344444444444311 1112233
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----CCCHHH
Q 048281 449 ----VGVLSACSHSGFLSQGREFLPLMESRYGVVPT----IEHYTCVIDMLGRAGQLNEAYELALAMPN-----EANPVV 515 (660)
Q Consensus 449 ----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 515 (660)
.-++..|...|++.+|.+++..+.+...-..+ ..++..-+.+|...|++.++...+..... .+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 24677788889999998888888774322111 24566677788888888888877765421 123322
Q ss_pred H----HHHHHHHH-HcCChHHHHHHHHHHHh
Q 048281 516 W----RTLLAASR-LHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 516 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~ 541 (660)
- ..-+-.+. ..+++..|-..|-+..+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1 11223345 67888888888877764
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.06 E-value=22 Score=26.52 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 048281 352 LMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALD 431 (660)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 431 (660)
.++|..|-+.+...+. . ..+--.-+..+...|++++|..+.+....||...|-+|.. .+.|..+++..
T Consensus 23 HqEA~tIAdwL~~~~~-~---------E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE-E---------EAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp HHHHHHHHHHHHHTTC-H---------HHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-H---------HHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHH
Confidence 4555556555555543 1 2222233445678899999999999999999999987754 46677788888
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 048281 432 MFSCMCEAKLKPDEVTFV 449 (660)
Q Consensus 432 ~~~~m~~~g~~p~~~~~~ 449 (660)
.+.++...| .|....|.
T Consensus 91 rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 887777766 45544443
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=75.84 E-value=9.4 Score=35.49 Aligned_cols=182 Identities=9% Similarity=-0.012 Sum_probs=102.1
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHhHcCCChhHHHHHHccCCCCCC---cccHHHHHHHHHcCCC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLSITSLINMYSKCCQMKYALFVFNNLSCEPN---VFTYNAMISGFYSNDF 114 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~~~ 114 (660)
.|...+..|+. ++.+.+++.|..++.......+...+..|+.+-+..+++ ....++ ..-++.|.. .+..|+
T Consensus 34 ~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~L~~-A~~~g~ 107 (285)
T 3kea_A 34 ASYYAIADNNV----RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF-SGLDDSQFDDKGNTALYY-AVDSGN 107 (285)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCCCTTSCCHHHH-HHHTTC
T ss_pred HHHHHHHcCCH----HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHH-HHHcCC
Confidence 34445556776 455666677765554433445666778899999988888 554433 333344433 445566
Q ss_pred hhHHHHHHHHHHHCCCCCCcc---cHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHhHhcCChHHHHH
Q 048281 115 AFKGLDFFNHMRQLGVLPDKY---TFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY-IGSALVNTYLKCQFMEEALK 190 (660)
Q Consensus 115 ~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~ 190 (660)
.+-+..+ .+.|..++.. -+.+.+...+..|+.+-+ +.+++.|..+... ...+.+...+..|..+-+..
T Consensus 108 ~~~v~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTVKLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 5544433 3445544432 224556666677776544 4455556544222 44556666678899888877
Q ss_pred HHccCC---CCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh
Q 048281 191 VFEELP---LRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFT 237 (660)
Q Consensus 191 ~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t 237 (660)
+++.-. ..|..-++..+...+..|+ .++++.+.+.|..++...
T Consensus 180 Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHTCTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTT
T ss_pred HHHcCCCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCC
Confidence 775422 2222223332333334454 345566667777776654
No 274
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=73.80 E-value=31 Score=30.45 Aligned_cols=111 Identities=6% Similarity=-0.056 Sum_probs=55.0
Q ss_pred HHhHcCCChhHHHHHHccCCCCCCccc--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc---HHHHHHHHhhhCC
Q 048281 75 NMYSKCCQMKYALFVFNNLSCEPNVFT--YNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT---FPCLIKCCCDVMA 149 (660)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~~~ 149 (660)
...++.|+++....+++ ....++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 34466788888888887 433332221 122344455566654 3444445554443221 1234444555666
Q ss_pred HHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHHHHHHcc
Q 048281 150 VLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEALKVFEE 194 (660)
Q Consensus 150 ~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 194 (660)
.+- ++.+.+.|..++.. .....+...+..|+.+-+..+++.
T Consensus 89 ~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 89 LSM----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHH----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 553 34445556555432 112334444566776666666654
No 275
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.60 E-value=24 Score=40.46 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=26.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 048281 416 MILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREFLPLME 472 (660)
Q Consensus 416 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 472 (660)
++..+...+.++-+.++... .+-++..--.+..++...|++++|.++|.++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44455555665555443321 12233332233445666677777777776653
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.53 E-value=98 Score=32.38 Aligned_cols=240 Identities=9% Similarity=-0.062 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHhhcCCCCCHHH----HHHHHHHHhcccchHHHHHHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHH
Q 048281 315 GNHDGTLRLFDRMLSAGFQPDLVT----FSTVLPACSHLAALMHGRQIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYT 390 (660)
Q Consensus 315 g~~~~a~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 390 (660)
.+.+.|...|....+.+ ..+... ...+.......+....+...+......... .....-.+....
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~e~~~r~Al 296 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS----------TSLIERRVRMAL 296 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC----------HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC----------hHHHHHHHHHHH
Confidence 37789999998886543 223322 222222334445234444444443332221 222333444455
Q ss_pred hcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 048281 391 KCGSMRDAQMVFTKMSKKD---VASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGFLSQGREF 467 (660)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 467 (660)
+.|+++.|...|+.|.... ....-=+..++...|+.++|..+|+++... . +|-.++. -.+.|..-.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lA-a~~Lg~~~~---- 365 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVA-AQRIGEEYE---- 365 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHH-HHHTTCCCC----
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHH-HHHcCCCCC----
Confidence 7799999999999997532 222223556778889999999999998742 2 2333332 122221000
Q ss_pred HHHhHHhcCCCCC-h---H--HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048281 468 LPLMESRYGVVPT-I---E--HYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQ 541 (660)
Q Consensus 468 ~~~~~~~~~~~~~-~---~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 541 (660)
. ......+. . . .-..-+..+...|....|...+..+....+......+.......|..+.++....+...
T Consensus 366 ---~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~ 441 (618)
T 1qsa_A 366 ---L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (618)
T ss_dssp ---C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred ---C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 0 00000010 0 0 11223455678899999988877765444555455566666778888888766654322
Q ss_pred cCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 542 LEP---GHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 542 ~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
.+. .-|..|.....-+++.-.++..+-.---..+.+..|
T Consensus 442 ~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p 483 (618)
T 1qsa_A 442 WDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNP 483 (618)
T ss_dssp TTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCT
T ss_pred hcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCC
Confidence 110 112345556666666555555443322334444443
No 277
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=69.87 E-value=66 Score=31.75 Aligned_cols=144 Identities=11% Similarity=0.041 Sum_probs=66.5
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHhHcCCChhHHHHHHccCCCCCC---cccHHHHHHHHHcC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPL--SITSLINMYSKCCQMKYALFVFNNLSCEPN---VFTYNAMISGFYSN 112 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~ 112 (660)
.|...+..|++ .+.+.+++.|..++.. .....+...++.|+.+-+..+++ ....++ ...++. +...+..
T Consensus 17 ~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~-L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHL----PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTP-LHCAARI 90 (437)
T ss_dssp HHHHHHHHTCH----HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH-HTCCSSCCCTTSCCH-HHHHHHH
T ss_pred HHHHHHHCCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCH-HHHHHHC
Confidence 44555566666 4555556666655432 11233445556677777777776 333222 222222 3333344
Q ss_pred CChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHH
Q 048281 113 DFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEA 188 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A 188 (660)
|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.+..++.. .....+...+..|+.+-+
T Consensus 91 g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 91 GHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp TCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 5443 3333344454443221 112344445566665444443 333322211 112233444566776666
Q ss_pred HHHHccC
Q 048281 189 LKVFEEL 195 (660)
Q Consensus 189 ~~~~~~~ 195 (660)
..+++.-
T Consensus 163 ~~Ll~~g 169 (437)
T 1n11_A 163 ELLLERD 169 (437)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 6666543
No 278
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.19 E-value=8.2 Score=35.10 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=43.4
Q ss_pred HHHhhcCCHHHHHHHHHh-CCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 489 DMLGRAGQLNEAYELALA-MPN-EANPVVWRTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 489 ~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
..+.+.|++++|+..... +.. +.|...-..|+.-++-.|+++.|.+-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345678888888887655 443 3456666777888888888888888888888888864
No 279
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=68.85 E-value=76 Score=29.89 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=33.4
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhH---HHHHHHHhHcCCChhHHHHHHccCCCC
Q 048281 36 IASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS---ITSLINMYSKCCQMKYALFVFNNLSCE 96 (660)
Q Consensus 36 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~ 96 (660)
+++|...++.|+++ +.+.+++.|..++... ..+-+...++.|+.+-+.-+++ ....
T Consensus 26 ~t~L~~Av~~g~~~----~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~ 84 (337)
T 4g8k_A 26 NHLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGAD 84 (337)
T ss_dssp HHHHHHHHHTTCHH----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCC
T ss_pred ChHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCc
Confidence 44555556778874 4555667787665321 1123445567788888888877 4433
No 280
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=68.29 E-value=17 Score=35.07 Aligned_cols=90 Identities=8% Similarity=0.059 Sum_probs=46.6
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHccCCCCCCcccHHHHHHHHHcCC
Q 048281 36 IASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFNNLSCEPNVFTYNAMISGFYSND 113 (660)
Q Consensus 36 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 113 (660)
.+.|...+..|+. .+.+.+++.|..++... ...-+...+..|+.+-+.-+++ ....++...-.+.+...+..|
T Consensus 21 ~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQT----DEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCCBTTBCHHHHHHHTT
T ss_pred CCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCHHHHHHHcC
Confidence 4455555566776 44555556676544321 1233455556677777777777 443333322222333344556
Q ss_pred ChhHHHHHHHHHHHCCC
Q 048281 114 FAFKGLDFFNHMRQLGV 130 (660)
Q Consensus 114 ~~~~a~~~~~~m~~~~~ 130 (660)
+.+-+..+++.-...|.
T Consensus 96 ~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQ 112 (364)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhccccCC
Confidence 66666666555443343
No 281
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=67.13 E-value=50 Score=28.09 Aligned_cols=150 Identities=7% Similarity=-0.043 Sum_probs=63.0
Q ss_pred hHcCCChhHHHHHHccCCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHH
Q 048281 77 YSKCCQMKYALFVFNNLSCEP---NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVL 151 (660)
Q Consensus 77 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~ 151 (660)
.+..|+.+....++.+....+ +..-++.|..+ +..|+. ++++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345677777777776322122 22223333333 333443 34444445555544322 112233344556655
Q ss_pred HHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHHHHHHccC-CC---CCchhHHHHHHHHHhCCChhHHHHHHHH
Q 048281 152 EVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEALKVFEEL-PL---RDVVLWNAMVNGYAQIGEFHKALEVFRR 225 (660)
Q Consensus 152 ~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 225 (660)
-++.+++. .+..++.. ...+.+...+..|+.+-+..+++.- .. +|..-++.|..+.........-.++++.
T Consensus 87 ~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 87 ILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 44444322 22222211 1112233345566666666666544 11 2222333333333222222333455555
Q ss_pred HHHCCCCCC
Q 048281 226 MSKEGIWMS 234 (660)
Q Consensus 226 m~~~~~~p~ 234 (660)
+.+.|..++
T Consensus 164 Ll~~ga~~~ 172 (201)
T 3hra_A 164 LMENGADQS 172 (201)
T ss_dssp HHHTTCCTT
T ss_pred HHHCCCCCC
Confidence 555555544
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.02 E-value=56 Score=28.74 Aligned_cols=83 Identities=10% Similarity=-0.055 Sum_probs=37.3
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCC
Q 048281 109 FYSNDFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQF 184 (660)
Q Consensus 109 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 184 (660)
.++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +++.+++.|..++.. .....+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3445666555555555555554443221 112333344455543 333444455444321 11223333445566
Q ss_pred hHHHHHHHccC
Q 048281 185 MEEALKVFEEL 195 (660)
Q Consensus 185 ~~~A~~~~~~~ 195 (660)
.+-+..+++..
T Consensus 92 ~~~~~~Ll~~~ 102 (241)
T 1k1a_A 92 PTCLRALLDSA 102 (241)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 66555555543
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.81 E-value=62 Score=27.88 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 048281 379 VFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHS 458 (660)
Q Consensus 379 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 458 (660)
..+-...+.++.+.|..+....+...+..++...-...+.++.+.|.. ++...+.++.. .++...-...+.++.+.
T Consensus 95 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 95 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 334444444444444433333333333344444444444444444432 23333333332 33444444444444444
Q ss_pred CC
Q 048281 459 GF 460 (660)
Q Consensus 459 g~ 460 (660)
+.
T Consensus 171 ~~ 172 (211)
T 3ltm_A 171 GG 172 (211)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.98 E-value=45 Score=27.29 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=35.8
Q ss_pred HHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 532 AEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 532 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
+..+|..+... ....+..|...+..+...|++.+|.++++.=.+.+.+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 77777777665 34455677778888888888888888888877766554
No 285
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=64.49 E-value=33 Score=30.31 Aligned_cols=143 Identities=7% Similarity=0.015 Sum_probs=71.0
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHhHcCCChhHHHHHHccCCCCCC---cccHHHHHHHHHcC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPL--SITSLINMYSKCCQMKYALFVFNNLSCEPN---VFTYNAMISGFYSN 112 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~ 112 (660)
.|...+..|+. ++.+.+++.|..++.. .....+...+..|+.+-+..+++ ....++ ...++. +...+..
T Consensus 14 ~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~-L~~A~~~ 87 (237)
T 3b7b_A 14 PLHAAAEAGHV----DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTC-LHLAAKK 87 (237)
T ss_dssp HHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHHcCcH----HHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcH-HHHHHHc
Confidence 34555566776 4566667777655432 11234555567788888888887 443332 222333 3333445
Q ss_pred CChhHHHHHHHHHHHCC-CCCC---cccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChH
Q 048281 113 DFAFKGLDFFNHMRQLG-VLPD---KYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFME 186 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~-~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~ 186 (660)
|+.+ +++.+.+.| ..++ ..-. +.+...+..|+.+ +++.+++.|..++.. ...+.+...+..|..+
T Consensus 88 ~~~~----~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 88 GHYE----VVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp TCHH----HHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH
T ss_pred CCHH----HHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH
Confidence 5543 344444444 2222 2222 2333444556654 444455566554432 1222334445556666
Q ss_pred HHHHHHccC
Q 048281 187 EALKVFEEL 195 (660)
Q Consensus 187 ~A~~~~~~~ 195 (660)
-+..+++.-
T Consensus 159 ~~~~Ll~~g 167 (237)
T 3b7b_A 159 IAEILLAAK 167 (237)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHcC
Confidence 665555543
No 286
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.08 E-value=18 Score=36.11 Aligned_cols=59 Identities=10% Similarity=-0.086 Sum_probs=26.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 048281 448 FVGVLSACSHSGFLSQGREFLPLMESRY-GVVPTIEHYTCVIDMLGRAGQLNEAYELALA 506 (660)
Q Consensus 448 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 506 (660)
...+...+.+.|+++.|.+.+.++.... +...-...+-..++++...+++..+...+.+
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344444555555555555555554421 1111123444444444445555444444443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.65 E-value=64 Score=26.77 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=36.7
Q ss_pred HHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 532 AEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 532 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
+..+|..+... ....+..|...+..+...|++.+|.++++.-.+.+.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 66677777664 44456677788888888888888888888887776654
No 288
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=59.72 E-value=43 Score=28.55 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 048281 497 LNEAYELALAMPNEANPV-------VWRTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYE 564 (660)
Q Consensus 497 ~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 564 (660)
++.|+.+|+.+....+.. .--..+..|.+.|.+++|.+++++.....+.+...-.-|..+-.+..-+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H 168 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFH 168 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCc
Confidence 577888888877643321 11234457899999999999999988876665444444444444443333
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.58 E-value=1.4e+02 Score=29.23 Aligned_cols=205 Identities=10% Similarity=0.040 Sum_probs=101.7
Q ss_pred HHHHhHcCCChhHHHHHHccCCCCCCccc--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHHHhhhC
Q 048281 73 LINMYSKCCQMKYALFVFNNLSCEPNVFT--YNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKY--TFPCLIKCCCDVM 148 (660)
Q Consensus 73 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~ 148 (660)
.+...+..|+.+-+..+++ ....++... ..+.+...+..|+.+-+..+ .+.|..++.. .-.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCC
Confidence 4555677899999888888 554443321 12334444555665544444 3445444322 1123455556677
Q ss_pred CHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHHHHHHccCCCC---CchhHHHHHHHHHhCCChhHHHHHH
Q 048281 149 AVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEALKVFEELPLR---DVVLWNAMVNGYAQIGEFHKALEVF 223 (660)
Q Consensus 149 ~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~ 223 (660)
+.+- .+.+++.|..++.. ...+.+...++.|+.+-+..+++.-... +...++ .+...+..|+.+ ++
T Consensus 92 ~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v 162 (437)
T 1n11_A 92 HTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----VA 162 (437)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HH
T ss_pred CHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----HH
Confidence 7654 44455667655432 1223445556778888888887654332 222222 233344556654 44
Q ss_pred HHHHHCCCCCChhh--HHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchHH--HHHHHHHHcCCCHHHHHHHHHh
Q 048281 224 RRMSKEGIWMSRFT--VTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPVM--NALIDMYGKGKCVGEALEIFEM 295 (660)
Q Consensus 224 ~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~~~~~~A~~~~~~ 295 (660)
+.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++.... .+.+...+..|+.+-+..+++.
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 44455555544321 112233344445543 33344455544432211 1233344556666666555554
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.42 E-value=1.5e+02 Score=29.45 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCC--C--hH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEA--KLKPD---EVTFVGVLSACSHSGFLSQGREFLPLMESRY-GVVP--T--IE 482 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~--~~ 482 (660)
...|...|...|++.+|..++.++... |..+. ...+...++.|...+++.+|..++..+.... ...+ + ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456778888899999999999988743 22211 1345566678889999999999998875321 2222 2 24
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 483 HYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 483 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
.+..++..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 67788888899999999988876653
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=55.88 E-value=28 Score=31.35 Aligned_cols=54 Identities=9% Similarity=-0.040 Sum_probs=32.4
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhH-------HHHHHHHh--HcCCChhHHHHHHc
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS-------ITSLINMY--SKCCQMKYALFVFN 91 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~ll~~~--~~~g~~~~A~~~~~ 91 (660)
.|...++.|+.+....+++.+.+.|..++... .+.|..+. ++.|+.+-+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~ 70 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence 44555667888888888888888886665332 22333222 15566666665555
No 292
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.58 E-value=85 Score=31.09 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCchhHHHHHHHH
Q 048281 202 LWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMS--RFTVTGVLSALIMMGFFKNGRVVHGIV 261 (660)
Q Consensus 202 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~ 261 (660)
++..+...|.+.|+++.|.+.|.++...-..+. ...+..+++.+...+++..+......+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455566666666777777777776665322222 224445555555556666555555444
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=54.20 E-value=36 Score=30.64 Aligned_cols=24 Identities=4% Similarity=-0.240 Sum_probs=12.5
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCC
Q 048281 110 YSNDFAFKGLDFFNHMRQLGVLPD 133 (660)
Q Consensus 110 ~~~~~~~~a~~~~~~m~~~~~~p~ 133 (660)
++.|+.+....+++.+.+.|..++
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344555555555555555544444
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.31 E-value=1e+02 Score=26.10 Aligned_cols=147 Identities=14% Similarity=0.053 Sum_probs=65.9
Q ss_pred HHHHHhHhcCChHHHHHHHccCCCCCchhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCchh
Q 048281 174 ALVNTYLKCQFMEEALKVFEELPLRDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGFFKN 253 (660)
Q Consensus 174 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 253 (660)
..+..+.+.+..+....+.+.+..++...-...+.++...+..+ +...+..+.. .++...-...+.++...++.+.
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~ 108 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 108 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 33333333333333333333344444444444444455444432 2333333332 2444454555555555554432
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhh
Q 048281 254 GRVVHGIVVKMGYDSGVPVMNALIDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLS 329 (660)
Q Consensus 254 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 329 (660)
...+.. +. -.++..+-...+.++.+.+..+....+.+.+..++...-...+.++.+.|. .++...+..+.+
T Consensus 109 ~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 109 VEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 222222 11 134555555555566555554433344444444555555555555555554 345555555554
No 295
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=53.10 E-value=84 Score=25.75 Aligned_cols=119 Identities=8% Similarity=-0.088 Sum_probs=56.9
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHhHcCCChhHHHHHHccCCCCCC---cccHHHHHHHH
Q 048281 35 CIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPL--SITSLINMYSKCCQMKYALFVFNNLSCEPN---VFTYNAMISGF 109 (660)
Q Consensus 35 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~ 109 (660)
-...+...++.|+. ++.+.+++.|..++.. .....+...++.|+.+-+..+++ ....++ ...++.|. ..
T Consensus 14 ~~~~l~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~-~A 87 (169)
T 2y1l_E 14 LGKKLLEAARAGRD----DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHAGMTPLR-LA 87 (169)
T ss_dssp HHHHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH-HH
T ss_pred ccchHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHH-HH
Confidence 34455555667776 4455556667654321 12234555566788887777777 433322 22223333 33
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCC
Q 048281 110 YSNDFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDL 167 (660)
Q Consensus 110 ~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 167 (660)
+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+- .+.+++.|..+
T Consensus 88 ~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~ 139 (169)
T 2y1l_E 88 ALFGHLE----IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI----VEVLLKNGADV 139 (169)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCC
Confidence 3444443 3344444555443321 1123333444555443 33344455444
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.01 E-value=1.1e+02 Score=26.07 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 443 PDEVTFVGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 443 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
++...-...+.++...|. .++...+..+..
T Consensus 150 ~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 344444444444444443 233444444433
No 297
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=52.06 E-value=1.5e+02 Score=27.65 Aligned_cols=272 Identities=10% Similarity=0.008 Sum_probs=132.9
Q ss_pred HHHHHHhHcCCChhHHHHHHccCCCCCCcc----cHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHH
Q 048281 71 TSLINMYSKCCQMKYALFVFNNLSCEPNVF----TYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCC 144 (660)
Q Consensus 71 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~ 144 (660)
+..+..-++.|+++.+..+++ .+..+|.. -++.|.. .+..|+.+ +.+.+.+.|..|+... ....+...
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~-~Gadvn~~~~~~g~TpLh~-A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHN-AVQMSRED----IVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCcCHHHH-HHHcCCHH----HHHHHHHcCCchhhhccCCCchhHHH
Confidence 445555678899999999998 55544432 2334433 34566654 4445556666554321 11222223
Q ss_pred hhhCCHHHHHHHHHHHHHhCCCCCh---hHHHHHHHHhHhcCChHHHHHHHccCCCCC-------------chhHHHHHH
Q 048281 145 CDVMAVLEVKKIHGLVFKLGLDLDV---YIGSALVNTYLKCQFMEEALKVFEELPLRD-------------VVLWNAMVN 208 (660)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~ 208 (660)
...+...... .+...+..++. .-.+ -+...+..|..+-+..+++.-...+ ..-++.| .
T Consensus 100 ~~~~~~~~~~----~~~~~~~~~~~~d~~g~t-~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L-~ 173 (337)
T 4g8k_A 100 AIAGSVKLLK----LFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL-M 173 (337)
T ss_dssp HHHTCHHHHH----HHHTTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH-H
T ss_pred HhcccchhhH----HhhhccchhhhhccCCCC-HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH-H
Confidence 3333333322 23333433322 1122 3334456777777777665432211 1112233 3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh---hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCchH--HHHHHHHHHcC
Q 048281 209 GYAQIGEFHKALEVFRRMSKEGIWMSRF---TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGVPV--MNALIDMYGKG 283 (660)
Q Consensus 209 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 283 (660)
..+..|+.+-+..++. +.|..++.. ..+.+..++. .+.......+.+.+.+.|..++... -.+-+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 3345566654433332 245444322 2222332222 2233334455566778887665432 22345556678
Q ss_pred CCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHHHHH
Q 048281 284 KCVGEALEIFEMME----EKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGRQIH 359 (660)
Q Consensus 284 ~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 359 (660)
|..+.+..+++.-. .+|..-++.|..+ ++.|+.+ +.+.+.+.|..+|..+ . +...+..|+.+ +.
T Consensus 250 ~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv 317 (337)
T 4g8k_A 250 KHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHS----LV 317 (337)
T ss_dssp TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHH----HH
T ss_pred hhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHH----HH
Confidence 88888777775421 1233333344333 4556543 4555667888887654 2 22333445543 55
Q ss_pred HHHHHhCccCC
Q 048281 360 GYIVVNGLAKN 370 (660)
Q Consensus 360 ~~~~~~~~~~~ 370 (660)
+.+++.|-.++
T Consensus 318 ~~Ll~~GA~~d 328 (337)
T 4g8k_A 318 KVLLSHGAKED 328 (337)
T ss_dssp HHHHHTTCCC-
T ss_pred HHHHHCcCCCC
Confidence 66677776665
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.58 E-value=56 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCCCHHH
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKD---IFSWNSIMTVHEQCGN--HDGTLRLFDRMLSAGFQPDLVT 338 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t 338 (660)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3567788888899999999999987652 2233444444444432 3567888888887776555443
No 299
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=51.47 E-value=56 Score=26.32 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=7.1
Q ss_pred HhcCChHHHHHHHcc
Q 048281 180 LKCQFMEEALKVFEE 194 (660)
Q Consensus 180 ~~~g~~~~A~~~~~~ 194 (660)
+..|+.+-+..+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344555544444444
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.07 E-value=1.2e+02 Score=26.03 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCC
Q 048281 213 IGEFHKALEVFRRMSKEGIWMSRF-TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDS 268 (660)
Q Consensus 213 ~~~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 268 (660)
.+...++.++|..|...||-.... .|......+...|++.+|..++..-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567778888887777654433 44455555556666666666666666555544
No 301
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=49.76 E-value=1.2e+02 Score=25.88 Aligned_cols=160 Identities=10% Similarity=0.034 Sum_probs=76.1
Q ss_pred HHHHHcCCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccchHHHH
Q 048281 277 IDMYGKGKCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAALMHGR 356 (660)
Q Consensus 277 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 356 (660)
+..+.+.+..+....+.+.+..++...-...+.++.+.++. ++...+.++.. .++...-...+.++...++.+...
T Consensus 40 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~ 115 (211)
T 3ltm_A 40 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAVE 115 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHH
T ss_pred HHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHHH
Confidence 33333333333333333333444444444444445554443 23333333332 345555555555555555543322
Q ss_pred HHHHHHHHhCccCCCCCCCCcchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 048281 357 QIHGYIVVNGLAKNGSCKDIDDVFMNNALMDMYTKCGSMRDAQMVFTKMSKKDVASWNIMILGYGMDGQGKEALDMFSCM 436 (660)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 436 (660)
.+...+ -+++ ..+-...+.++.+.|..+....+...+..++...-...+.++.+.+. .++...+.++
T Consensus 116 ~L~~~l----~d~~--------~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 116 PLIKAL----KDED--------WFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HHHHHT----TCSS--------HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred HHHHHH----hCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 222211 1222 55556666666666665444444444445666655666666666665 4566666666
Q ss_pred HHcCCCCCHHHHHHHHHHHh
Q 048281 437 CEAKLKPDEVTFVGVLSACS 456 (660)
Q Consensus 437 ~~~g~~p~~~~~~~ll~~~~ 456 (660)
... ++...-...+.++.
T Consensus 183 l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 183 AET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHH---CCHHHHHHHHHHHH
T ss_pred HhC---CCHHHHHHHHHHHH
Confidence 653 34444433444433
No 302
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.48 E-value=91 Score=27.25 Aligned_cols=175 Identities=11% Similarity=0.069 Sum_probs=92.0
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHhHcCCChhHHHHHHccCC-CC---CCcccHHHHHHHHHcC
Q 048281 39 LQLCAHQTNLQKGQEIHSYMLRTGIIDSPL--SITSLINMYSKCCQMKYALFVFNNLS-CE---PNVFTYNAMISGFYSN 112 (660)
Q Consensus 39 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~~~li~~~~~~ 112 (660)
|......|+. ++.+.+.+.|..++.. .....+...+..|+.+-+..+++ .. .. ++...++.+. ..+..
T Consensus 48 L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~-~A~~~ 121 (237)
T 3b7b_A 48 LMEAAENNHL----EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS-NGQMDVNCQDDGGWTPMI-WATEY 121 (237)
T ss_dssp HHHHHHTTCH----HHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHT-TTCCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCCCHHH-HHHHc
Confidence 3444455665 5666677777654332 12234555667889988888888 43 22 2222333333 33445
Q ss_pred CChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHH
Q 048281 113 DFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEA 188 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A 188 (660)
|+. ++++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...++.|+.+-+
T Consensus 122 ~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 193 (237)
T 3b7b_A 122 KHV----DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193 (237)
T ss_dssp TCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred CCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH
Confidence 554 35555566666654331 123444555667765 455556667665532 123344555667777777
Q ss_pred HHHHccCCCCC---chhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 048281 189 LKVFEELPLRD---VVLWNAMVNGYAQIGEFHKALEVFRRMSK 228 (660)
Q Consensus 189 ~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 228 (660)
.-+++.-...+ ..-. +-+......|+...++++.+.+.+
T Consensus 194 ~~Ll~~gad~~~~d~~g~-t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 194 VLFLSRDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHTTTCCTTCCCTTSC-CHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccCCCCC-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66665533321 1111 223333455666666666666544
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.97 E-value=90 Score=29.75 Aligned_cols=19 Identities=0% Similarity=-0.265 Sum_probs=11.3
Q ss_pred HHHHHcCCCHHHHHHHHHh
Q 048281 277 IDMYGKGKCVGEALEIFEM 295 (660)
Q Consensus 277 i~~~~~~~~~~~A~~~~~~ 295 (660)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3444556677666666664
No 304
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=46.92 E-value=51 Score=30.30 Aligned_cols=59 Identities=5% Similarity=-0.120 Sum_probs=13.5
Q ss_pred hhHHHHHHHhhccCChhHHHHHHHHHHH---------hCCCCChhHHHHHHHHhHcCCChhHHHHHHc
Q 048281 33 ATCIASLQLCAHQTNLQKGQEIHSYMLR---------TGIIDSPLSITSLINMYSKCCQMKYALFVFN 91 (660)
Q Consensus 33 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 91 (660)
....+.+...+..|+.+...++.....+ .++..........+...+..|+.+.+..+++
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~ 80 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS 80 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3345566666666666555443322211 1111111111223444456677776666666
No 305
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=46.74 E-value=1.4e+02 Score=25.90 Aligned_cols=17 Identities=6% Similarity=0.131 Sum_probs=9.3
Q ss_pred HHhHcCCChhHHHHHHc
Q 048281 75 NMYSKCCQMKYALFVFN 91 (660)
Q Consensus 75 ~~~~~~g~~~~A~~~~~ 91 (660)
...+..|+.+-+..+++
T Consensus 45 ~~A~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 45 HWACSAGHTEIVEFLLQ 61 (231)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 33445566666655555
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.38 E-value=1.2e+02 Score=25.58 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=70.8
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChhH--HHHHHHHhHhcC
Q 048281 109 FYSNDFAFKGLDFFNHMRQLGVLPD---KYTFPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVYI--GSALVNTYLKCQ 183 (660)
Q Consensus 109 ~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g 183 (660)
.+..|+.+....++..- +..++ ..-++ .+...+..|+.+ +.+.+++.|..++... ..+.+...+..|
T Consensus 12 A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT---TYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHTTCHHHHHHHHTCT---TCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHcC---CCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34567776666665432 11222 22233 344455667755 4445556676655322 223444556778
Q ss_pred ChHHHHHHHccCC-C---CCchhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC---ChhhHHHHHHHHHccCCchhHH
Q 048281 184 FMEEALKVFEELP-L---RDVVLWNAMVNGYAQIGEFHKALEVFRRMSKEG-IWM---SRFTVTGVLSALIMMGFFKNGR 255 (660)
Q Consensus 184 ~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p---~~~t~~~ll~~~~~~~~~~~a~ 255 (660)
+.+-+..+++.-. . .+..-.+. +...+..|+.+-+ +.+.+.| ..+ |..-.+.+..++........-.
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNV----KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHH----HHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHH----HHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 8888888875433 1 12222222 2333455655433 3333333 222 2223333444433322233335
Q ss_pred HHHHHHHHhCCCCCc
Q 048281 256 VVHGIVVKMGYDSGV 270 (660)
Q Consensus 256 ~~~~~~~~~g~~~~~ 270 (660)
.+.+.+.+.|..++.
T Consensus 159 ~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 159 DIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHTTCCTTC
T ss_pred HHHHHHHHCCCCCCc
Confidence 566666677765543
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.40 E-value=1.5e+02 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.280 Sum_probs=34.5
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccc
Q 048281 306 SIMTVHE---QCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 306 ~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (660)
.+|+++. +-.+.+.|+-++.+|.+.| .|....-..++.+....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 3455544 4589999999999999999 8877777777777766664
No 308
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.64 E-value=1.3e+02 Score=26.11 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=21.7
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHH
Q 048281 140 LIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEA 188 (660)
Q Consensus 140 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A 188 (660)
.+...+..|+.+-+ +.+++.|..++.. ...+-+...+..|+.+-+
T Consensus 124 ~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~ 170 (232)
T 2rfa_A 124 PLSFAACVGSEEIV----RLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170 (232)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHH
T ss_pred HHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHH
Confidence 34444555655433 3344556554422 122344445566666655
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=43.57 E-value=80 Score=24.92 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSKKDV---ASWNIMILGYGMDGQ--GKEALDMFSCMCEAKLKPDEV 446 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 446 (660)
.....++.-|...|+.++|.+.++++..|.. .....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 8 kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 8 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456788899999999999999999876522 344445555555432 356777888888777554443
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.20 E-value=51 Score=27.03 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCCCHHH
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKD---IFSWNSIMTVHEQCGN--HDGTLRLFDRMLSAGFQPDLVT 338 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t 338 (660)
.+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567788888899999999999987652 2333444444444322 3467788888887776555443
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.11 E-value=73 Score=28.39 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=14.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 048281 207 VNGYAQIGEFHKALEVFRRMSK 228 (660)
Q Consensus 207 i~~~~~~~~~~~A~~~~~~m~~ 228 (660)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5566667777777777666543
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.36 E-value=1e+02 Score=27.08 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhc--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 048281 530 DLAEIAAQRVFQL--EPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQNVRK 580 (660)
Q Consensus 530 ~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 580 (660)
+.+..+|..+... ....+..|...+..+...|++.+|.++|+.=.+.+.+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566777777765 44456677888888888888888888888877766544
No 313
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=39.40 E-value=2.4e+02 Score=26.22 Aligned_cols=118 Identities=8% Similarity=-0.017 Sum_probs=50.5
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCCh--hHHHHHHHHhHcCCChhHHHHHHccCCCCCC---cccHHHHHHHHHcC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSP--LSITSLINMYSKCCQMKYALFVFNNLSCEPN---VFTYNAMISGFYSN 112 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~ 112 (660)
.|...++.|+.+....++. ..+..++. ......+...+..|+.+-+..+++ ....++ ..-++.|. ..+..
T Consensus 27 ~L~~A~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~-~A~~~ 101 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLH-NACSY 101 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHH-HHHHT
T ss_pred hHHHHHHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHH-HHHHC
Confidence 4444455666654444432 22332221 111233445556677777766666 433322 22223333 23344
Q ss_pred CChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCC
Q 048281 113 DFAFKGLDFFNHMRQLGVLPDKYT--FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLD 168 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 168 (660)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+- .+.+++.|..++
T Consensus 102 g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~ 151 (351)
T 3utm_A 102 GHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV----CSLLLSHGADPT 151 (351)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred CCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 4433 3444444555444321 1123333445555543 333344555443
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.33 E-value=1.2e+02 Score=26.89 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=14.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 048281 106 ISGFYSNDFAFKGLDFFNHMRQ 127 (660)
Q Consensus 106 i~~~~~~~~~~~a~~~~~~m~~ 127 (660)
+..+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666777777776666543
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.06 E-value=2.4e+02 Score=26.22 Aligned_cols=80 Identities=9% Similarity=0.115 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 048281 413 WNIMILGYGMDGQGKEALDMFSCMCEAKLKPDEVTFVGVLSACSHSGF--LSQGREFLPLMESRYGVVPTIEHYTCVIDM 490 (660)
Q Consensus 413 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 490 (660)
.+.++.=|...|+.++|.+.++++......+ ......+..++-+.++ .+....++..+.+. ++-+.......+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 3455666666677777777776664211111 1233334444444322 34455666666553 554444444444444
Q ss_pred Hhhc
Q 048281 491 LGRA 494 (660)
Q Consensus 491 ~~~~ 494 (660)
+...
T Consensus 247 l~~l 250 (307)
T 2zu6_B 247 YNEI 250 (307)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4333
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.05 E-value=2e+02 Score=24.83 Aligned_cols=18 Identities=6% Similarity=-0.219 Sum_probs=9.6
Q ss_pred HHHhHcCCChhHHHHHHc
Q 048281 74 INMYSKCCQMKYALFVFN 91 (660)
Q Consensus 74 l~~~~~~g~~~~A~~~~~ 91 (660)
+...++.|+++....+++
T Consensus 10 l~~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 10 ICNLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 334445566666655554
No 317
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=37.90 E-value=2.3e+02 Score=25.65 Aligned_cols=143 Identities=10% Similarity=-0.033 Sum_probs=68.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHccCCCCCC---cccHHHHHHHHHcC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFNNLSCEPN---VFTYNAMISGFYSN 112 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~ 112 (660)
.|...+..|+. ++.+.+++.|..++... ...-+...+..|+.+-+..+++ ....++ ..-++.|..+ +..
T Consensus 62 ~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A-~~~ 135 (285)
T 3d9h_A 62 PMHEAAIHGHQ----LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNA-CVS 135 (285)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHH-HHH
T ss_pred HHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH-HHc
Confidence 45555566776 55666667776554321 2233455567788888887777 443332 2223333333 333
Q ss_pred CChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHhhhCCHHHHHHHHHHHHHhCCCCChh--HHHHHHHHhHhcCChHHHH
Q 048281 113 DFAFKGLDFFNHMRQLGVLPDKYT-FPCLIKCCCDVMAVLEVKKIHGLVFKLGLDLDVY--IGSALVNTYLKCQFMEEAL 189 (660)
Q Consensus 113 ~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~ 189 (660)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+- .+.+++.|..++.. ...+.+...+..|+.+-+.
T Consensus 136 ~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~ 207 (285)
T 3d9h_A 136 GSWD----CVNLLLQHGASVQPESDLASPIHEAARRGHVEC----VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207 (285)
T ss_dssp TCHH----HHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHH----HHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred CHHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 4433 4444445554443221 2233444455565543 33444555444321 1112333334555555555
Q ss_pred HHHcc
Q 048281 190 KVFEE 194 (660)
Q Consensus 190 ~~~~~ 194 (660)
.+++.
T Consensus 208 ~Ll~~ 212 (285)
T 3d9h_A 208 KLLES 212 (285)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 55543
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.65 E-value=2.9e+02 Score=26.38 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKD---IFSWNSIMTVHEQCGN--HDGTLRLFDRMLSAGFQPDLVTFSTVL 343 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll 343 (660)
.+.++.=|...++.++|.+.++++..|. ......+..++-+.++ .+.+.+++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4678888999999999999999998763 2334444445444333 356788888888887766655444433
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.24 E-value=2.8e+02 Score=30.82 Aligned_cols=90 Identities=4% Similarity=-0.223 Sum_probs=48.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC---CC----------------
Q 048281 451 VLSACSHSGFLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN---EA---------------- 511 (660)
Q Consensus 451 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---------------- 511 (660)
++..|...|..+-+.++..- .+.+...--.+..+|...|++++|...|+++.. .+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 44455555555554432221 222332223455666666777777776665432 00
Q ss_pred ------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC
Q 048281 512 ------NPVVWRTLLAASRLHGNTDLAEIAAQRVFQL-EPGH 546 (660)
Q Consensus 512 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 546 (660)
...-|..++..+.+++.++.+.+..+.+++. .+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 1124555666667777777777777777764 3443
No 320
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=35.18 E-value=2.6e+02 Score=26.22 Aligned_cols=129 Identities=9% Similarity=0.108 Sum_probs=69.7
Q ss_pred ChhHHHHHHHHHHHC-C----CCCCcccHHHH---HHHHhhhCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 048281 114 FAFKGLDFFNHMRQL-G----VLPDKYTFPCL---IKCCCDVMAVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQFM 185 (660)
Q Consensus 114 ~~~~a~~~~~~m~~~-~----~~p~~~t~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 185 (660)
+.+.|..+|..+... + ..|+....... +..+.+..+ -+++..+.+.|+.|..++..=++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888777643 1 23443222111 222222222 35677778888888888888888888877778
Q ss_pred HHHHHHHccCCCC--CchhHHH--HHH----HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048281 186 EEALKVFEELPLR--DVVLWNA--MVN----GYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMG 249 (660)
Q Consensus 186 ~~A~~~~~~~~~~--~~~~~~~--li~----~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 249 (660)
+.+.++|+.+... ....+-+ ++. ...+..++++.+++++... ...+......++.-.....
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~---p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTL---PNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTT---TCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhCC
Confidence 8888888876522 2221111 111 1223346777777666532 1123344555554444433
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.06 E-value=74 Score=26.04 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHH
Q 048281 380 FMNNALMDMYTKCGSMRDAQMVFTKMSKKD---VASWNIMILGYGMDGQ--GKEALDMFSCMCEAKLKPDEV 446 (660)
Q Consensus 380 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 446 (660)
...+.++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 345678889999999999999999987652 2344445555554322 345677788887776544443
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.81 E-value=2.2e+02 Score=24.40 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccc
Q 048281 306 SIMTVHE---QCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 306 ~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (660)
.+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3455554 458999999999999999988888777777777666553
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=34.77 E-value=1e+02 Score=31.15 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=39.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 048281 518 TLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHT 572 (660)
Q Consensus 518 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 572 (660)
.|+...+....++.|...|.++..+.|++...|+.|+.+....|+.-+|.-.+-+
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 3444555566677888888888888888888888888888877777666655443
No 324
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.75 E-value=1.2e+02 Score=24.28 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=4.2
Q ss_pred hhCCHHHHHHH
Q 048281 146 DVMAVLEVKKI 156 (660)
Q Consensus 146 ~~~~~~~a~~~ 156 (660)
..|+.+.++.+
T Consensus 11 ~~g~~~~v~~l 21 (156)
T 1bd8_A 11 ARGDVQEVRRL 21 (156)
T ss_dssp HHTCHHHHHHH
T ss_pred HhCCHHHHHHH
Confidence 33444333333
No 325
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=32.79 E-value=2.6e+02 Score=24.76 Aligned_cols=49 Identities=6% Similarity=0.011 Sum_probs=22.2
Q ss_pred HHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHc
Q 048281 39 LQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFN 91 (660)
Q Consensus 39 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~ 91 (660)
|...+..|+. ++.+.+++.|..++... ....+...+..|+.+-+..+++
T Consensus 7 L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 57 (261)
T 2xai_A 7 MHEAAIHGHQ----LSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 57 (261)
T ss_dssp HHHHHHHTCH----HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3334445554 34444555554433211 1122333345566666666665
No 326
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=32.72 E-value=1.9e+02 Score=23.19 Aligned_cols=16 Identities=6% Similarity=-0.068 Sum_probs=9.9
Q ss_pred HhHcCCChhHHHHHHc
Q 048281 76 MYSKCCQMKYALFVFN 91 (660)
Q Consensus 76 ~~~~~g~~~~A~~~~~ 91 (660)
..++.|+.+....+++
T Consensus 14 ~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 14 EAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHTCHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3445567776666666
No 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.59 E-value=2.4e+02 Score=24.26 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=10.5
Q ss_pred HHhHcCCChhHHHHHHc
Q 048281 75 NMYSKCCQMKYALFVFN 91 (660)
Q Consensus 75 ~~~~~~g~~~~A~~~~~ 91 (660)
...++.|+.+.+..+++
T Consensus 8 ~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 34455666666666666
No 328
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=32.52 E-value=3.5e+02 Score=26.19 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=51.6
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcCCCCcchHH
Q 048281 477 VVPTIEHYTCVIDMLGRAGQLNEAYELALAMPN--EANPVVW---RTLLAASRLHGNTDLAEIAAQRVFQLEPGHCGNYV 551 (660)
Q Consensus 477 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 551 (660)
..|+...+..++.+| +.+++.+...+++.... ..|+... ..+....+ ...+.++. .|-......
T Consensus 252 ~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i~--~pYsrIsl~ 320 (394)
T 3txn_A 252 SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRII--EPYSRVQVA 320 (394)
T ss_dssp CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHHH--TTCSEEEHH
T ss_pred CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHHh--HhhceeeHH
Confidence 346666667777765 66788777777776543 2355421 11111111 11122222 565556666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCC
Q 048281 552 LMSNIYVAGGKYEEVLDIRHTMRQQNV 578 (660)
Q Consensus 552 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 578 (660)
.++..+.- ..+++...+-+|...|.
T Consensus 321 ~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 321 HVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 77766643 68899999999988765
No 329
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.64 E-value=1.3e+02 Score=24.22 Aligned_cols=120 Identities=6% Similarity=-0.002 Sum_probs=54.9
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHccCCCCCCc---ccHHHHHHHHH
Q 048281 36 IASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFNNLSCEPNV---FTYNAMISGFY 110 (660)
Q Consensus 36 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~li~~~~ 110 (660)
.+.|....+.|+++....+++. .+..++... ....+...+..|+.+-+..+++ ....++. .-++.|. ..+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~-~A~ 83 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLH-NAC 83 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHH-HHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccCCCCCCHHH-HHH
Confidence 3445555667777555444322 222222111 1134455567788887777777 4433332 2223333 333
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCcccH--HHHHHHHhhhCCHHHHHHHHHHHHHhCCCCC
Q 048281 111 SNDFAFKGLDFFNHMRQLGVLPDKYTF--PCLIKCCCDVMAVLEVKKIHGLVFKLGLDLD 168 (660)
Q Consensus 111 ~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 168 (660)
..|+.+ +.+.+.+.|..++.... .+.+...+..|+.+- .+.+++.|..++
T Consensus 84 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~ 135 (165)
T 3twr_A 84 SYGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI----CKLLLQHGADPT 135 (165)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HcCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 445544 33444455555543221 123334445555543 333444555443
No 330
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.79 E-value=1.3e+02 Score=30.41 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 446 VTFVGVLSACSHSGFLSQGREFLPLMESRYGV--VPT---IEHYTCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 446 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
..++.+++.|...+.++.|..+.....- .. .++ ..-+..+...+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567777788888888888888887631 11 111 1222345666777888888888777643
No 331
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.33 E-value=41 Score=30.16 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=20.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCC
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDS 66 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 66 (660)
.|...+..|+.+....+.+.+.+.|..++
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 45556677888877788888888886554
No 332
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.15 E-value=41 Score=29.13 Aligned_cols=48 Identities=8% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHhcCCCCCh-HHH-----HHHHHHHhhcCCHHHHHHHHHhCC
Q 048281 461 LSQGREFLPLMESRYGVVPTI-EHY-----TCVIDMLGRAGQLNEAYELALAMP 508 (660)
Q Consensus 461 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 508 (660)
++.|+.+|+.+.+...+.... ... ...+-.|.+.|.+++|.+++++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 466777777776642221111 111 122334555666666666666543
No 333
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.10 E-value=2.8e+02 Score=23.97 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=36.9
Q ss_pred HHHHHHHHH---HcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcccc
Q 048281 304 WNSIMTVHE---QCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLAA 351 (660)
Q Consensus 304 ~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 351 (660)
+..+|+++. +-.+.+.|+-++.+|++.|-.|....-..++.+....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 334555554 458999999999999999988888877777777766653
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.95 E-value=1.4e+02 Score=30.29 Aligned_cols=65 Identities=8% Similarity=0.046 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH------HHH-HHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 048281 482 EHYTCVIDMLGRAGQLNEAYELALAMPNEANP------VVW-RTLLAASRLHGNTDLAEIAAQRVFQLEPGH 546 (660)
Q Consensus 482 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 546 (660)
..++.+++.|...+.++.|..++.+...+... ..| -.++..+...+++.+|.+.+..++..-|.+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44555566666666666666666554322110 111 112334444555555555555555554443
No 335
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.82 E-value=2.4e+02 Score=23.01 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCC
Q 048281 217 HKALEVFRRMSKEGIWMSRF-TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDS 268 (660)
Q Consensus 217 ~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 268 (660)
+++.++|..|...||-.... .|......+...|++.+|..++..-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45788888888887765543 45566666677777777777777777776666
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.48 E-value=2.6e+02 Score=23.95 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=38.8
Q ss_pred HHHHH---HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-----chhHHHHHHHHHHhCCC
Q 048281 206 MVNGY---AQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMGF-----FKNGRVVHGIVVKMGYD 267 (660)
Q Consensus 206 li~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~ 267 (660)
+|+++ .+-.+.+.|+-.+-+|++.| .|....-..++.+.-..|. +..|...++.....|.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 44444 34588999999999999999 6666565666666655554 22344444555555543
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.80 E-value=1.6e+02 Score=23.59 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048281 202 LWNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMG 249 (660)
Q Consensus 202 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 249 (660)
.-..++..+...+..-.|.++++.+.+.+...+..|..-.|..+...|
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444555555555566666666666555555555554555544444
No 338
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=27.10 E-value=2.9e+02 Score=23.46 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=28.7
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHc
Q 048281 38 SLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFN 91 (660)
Q Consensus 38 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~ 91 (660)
.|...+..|+. ++.+.+++.|..++... ....+...+..|+.+-+..+++
T Consensus 28 ~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 28 ALHLAARYSRS----DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 44445566665 45556666776554321 1233445566777777777776
No 339
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=27.06 E-value=2e+02 Score=22.21 Aligned_cols=128 Identities=5% Similarity=-0.040 Sum_probs=0.0
Q ss_pred CCCCCCCCCchhhHHHHHHHhhccCChhHHHHHHHHHHHhCCCCChhH--HHHHHHHhHcCCChhHHHHHHcc--CCCCC
Q 048281 22 GNQTFNHPFTLATCIASLQLCAHQTNLQKGQEIHSYMLRTGIIDSPLS--ITSLINMYSKCCQMKYALFVFNN--LSCEP 97 (660)
Q Consensus 22 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~--~~~~~ 97 (660)
....+..++....-.+.+...+..|+. ++.+.+++.|..++... ....+...+..|+.+-+..+++. .....
T Consensus 1 ~~~~~~~~~~~~~~~t~l~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 76 (136)
T 2jab_A 1 MRGSHHHHHHGSDLGKKLLEAARAGQD----DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76 (136)
T ss_dssp -----------CHHHHHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCCcccccccHHHHHHHHhCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCcccH--HHHHHHHhhhCCHHHHHHHHH
Q 048281 98 NVFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYTF--PCLIKCCCDVMAVLEVKKIHG 158 (660)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~ 158 (660)
|..-++.|..+..... .++.+.+.+.|..++.... .+.+...+..|+.+-+.-+.+
T Consensus 77 d~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 77 DAIGFTPLHLAAFIGH-----LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp CTTCCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
No 340
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.21 E-value=2.2e+02 Score=25.14 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=10.0
Q ss_pred HcCCChhHHHHHHHHHHHCCCC
Q 048281 110 YSNDFAFKGLDFFNHMRQLGVL 131 (660)
Q Consensus 110 ~~~~~~~~a~~~~~~m~~~~~~ 131 (660)
++.|+.+....+++.+.+.|..
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHcCCC
Confidence 3444554444444444444433
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.68 E-value=2.3e+02 Score=22.65 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhccc
Q 048281 302 FSWNSIMTVHEQCGNHDGTLRLFDRMLSAGFQPDLVTFSTVLPACSHLA 350 (660)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 350 (660)
..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3334455555566666778888888887766666666655555554444
No 342
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=24.09 E-value=66 Score=23.35 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCcccCceeecc
Q 048281 604 PEAKSIYAELHSLTARLREHGDCCAGTLFDS 634 (660)
Q Consensus 604 ~~~~~~~~~~~~l~~~m~~~~~~p~~~~~~~ 634 (660)
++..++...+++...+++..|+.||-.++.-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~ 43 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGR 43 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECH
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcH
Confidence 4556788888888899999999999887754
No 343
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.84 E-value=1.1e+02 Score=22.53 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChHHH
Q 048281 284 KCVGEALEIFEMMEEKDIFSWNSIMTVHEQCGNHDGT 320 (660)
Q Consensus 284 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 320 (660)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888899988888888888888888766665544
No 344
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.80 E-value=3.6e+02 Score=23.43 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HH-----HHHHHHHhccCCHHHHHHHHHHhHH
Q 048281 426 GKEALDMFSCMCEAKLKPDEV--TF-----VGVLSACSHSGFLSQGREFLPLMES 473 (660)
Q Consensus 426 ~~~A~~~~~~m~~~g~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~ 473 (660)
.+.|+.+|+.+.+.---|+.. .. ...+-.|.+.|.+++|.++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 567888888887653222221 11 1233467788888888888887754
No 345
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.06 E-value=2.5e+02 Score=25.04 Aligned_cols=19 Identities=0% Similarity=-0.046 Sum_probs=9.0
Q ss_pred cCCChhHHHHHHHHHHHCC
Q 048281 111 SNDFAFKGLDFFNHMRQLG 129 (660)
Q Consensus 111 ~~~~~~~a~~~~~~m~~~~ 129 (660)
+.|+.+....+++...+.+
T Consensus 22 ~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 22 AQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HTTCSSTTTTHHHHHHHSC
T ss_pred HcCCHHHHHHHHHHHhhcc
Confidence 3455555555555444433
No 346
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.86 E-value=3.2e+02 Score=22.54 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccCCchhHHHHHHHHHHhCCCCCc
Q 048281 217 HKALEVFRRMSKEGIWMSRF-TVTGVLSALIMMGFFKNGRVVHGIVVKMGYDSGV 270 (660)
Q Consensus 217 ~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 270 (660)
+.+.++|..|...||-.... .|......+-..|++..|..++..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 45777888888888765543 4555666666777777777777777777666643
No 347
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.73 E-value=4.1e+02 Score=23.70 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 048281 479 PTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLAASRLHGNTDLAEIAAQRVFQL 542 (660)
Q Consensus 479 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 542 (660)
++..+-...+.++.+.|+.+-.-.+.+.+. .++ .-...+.++...|+ ..+...+.++++.
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 344444455555555554332222222222 223 22333455555555 3455555555543
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.66 E-value=2.3e+02 Score=22.92 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 048281 203 WNAMVNGYAQIGEFHKALEVFRRMSKEGIWMSRFTVTGVLSALIMMG 249 (660)
Q Consensus 203 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 249 (660)
-..++..+...+..-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444555555555566666666665555455555444444444444
No 349
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.37 E-value=2.4e+02 Score=27.09 Aligned_cols=138 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 048281 383 NALMDMYTKCGSMRDAQMVFTKMSKKD---VASWNIMILGYGMDGQG--KEALDMFSCMCEAKLKPDEVTFVGVLSACSH 457 (660)
Q Consensus 383 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 457 (660)
.+++.-|...|+.++|...++++..|+ ......++......++. +.+..++..+...|+-+.......+...+..
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~ 95 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQ 95 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Q ss_pred cC----CHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048281 458 SG----FLSQGREFLPLMESRYGVVPTIEHYTCVIDMLGRAGQLNEAYELALAMPNEANPVVWRTLLA 521 (660)
Q Consensus 458 ~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 521 (660)
.. |...|..++..+..+ .+.-+......+...+...+...-...+++.+....+......+..
T Consensus 96 l~Dl~iDiP~a~~~la~f~ar-~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~~~l~~l~~ 162 (364)
T 3l6a_A 96 CPKLEVDIPLVKSYLAQFAAR-AIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQ 162 (364)
T ss_dssp HHHHHHHCTTHHHHHHHHHHH-HHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHhccccccHHHHHHHHHHH-HHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCHHHHHHHHH
No 350
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.23 E-value=2.4e+02 Score=26.22 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCCCHHHH
Q 048281 273 MNALIDMYGKGKCVGEALEIFEMMEEKD---IFSWNSIMTVHEQCGN--HDGTLRLFDRMLSAGFQPDLVTF 339 (660)
Q Consensus 273 ~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~ 339 (660)
...++.-|...|+.++|.+.++++..|. ...+..+..++-+.++ .+.+.+++..+.+.|+-+.....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3567888888899999999999998762 2233444444444333 35577888888877766655443
No 351
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=21.19 E-value=3.8e+02 Score=22.68 Aligned_cols=111 Identities=7% Similarity=-0.039 Sum_probs=51.5
Q ss_pred HHHHhHcCCChhHHHHHHccCCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CC---CcccHHHHHHHHh
Q 048281 73 LINMYSKCCQMKYALFVFNNLSCEPNVF---TYNAMISGFYSNDFAFKGLDFFNHMRQLGV-LP---DKYTFPCLIKCCC 145 (660)
Q Consensus 73 ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p---~~~t~~~ll~~~~ 145 (660)
.+...++.|+.+.+..+++ ....++.. .++. +...+..|+.+-+..+ .+.+. .+ +..-.+ .+...+
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t-~L~~A~ 100 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTP-LHAAVSADAQGVFQIL----IRNRATDLDARMHDGTT-PLILAA 100 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHBTTSCTTCCCTTCCC-HHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCc-HHHHHH
Confidence 4455567788887777777 44333322 2233 3333455555433333 33322 11 222222 233334
Q ss_pred hhCCHHHHHHHHHHHHHhCCCCChhH--HHHHHHHhHhcCChHHHHHHHcc
Q 048281 146 DVMAVLEVKKIHGLVFKLGLDLDVYI--GSALVNTYLKCQFMEEALKVFEE 194 (660)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 194 (660)
..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 101 ~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (223)
T 2f8y_A 101 RLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147 (223)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred HhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 455554 3344445555544321 22334444556666666666554
No 352
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.94 E-value=1.9e+02 Score=20.10 Aligned_cols=59 Identities=5% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHCCCCCCcccHHHHHHHHhhhC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 048281 125 MRQLGVLPDKYTFPCLIKCCCDVM-AVLEVKKIHGLVFKLGLDLDVYIGSALVNTYLKCQF 184 (660)
Q Consensus 125 m~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 184 (660)
|.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...+..+...|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555544433 33444444443 344556666666665555555555555555555443
No 353
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=20.79 E-value=6.7e+02 Score=25.40 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHH----HHH-HHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 048281 510 EANPVVWRTLLAASRLHGNTDLAEIA----AQR-VFQLEPGHCGNYVLMSNIYVAGGKYEEVLDIRHTMRQQN 577 (660)
Q Consensus 510 ~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 577 (660)
..|......|-.=+..+|..++-+++ +.. +.+..|++......|..-|.+.|++-+|.+++-.+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45665555555566666665443211 111 112346666667778888999999999999999887664
No 354
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.63 E-value=2.5e+02 Score=23.47 Aligned_cols=91 Identities=9% Similarity=0.022 Sum_probs=47.8
Q ss_pred HcCCChhHHHHHHccCCCCCC-cccHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCccc---HHHHHHHHhh-hCCHHH
Q 048281 78 SKCCQMKYALFVFNNLSCEPN-VFTYNAMISGFYSNDFAFKGLDFFNHMRQLGVLPDKYT---FPCLIKCCCD-VMAVLE 152 (660)
Q Consensus 78 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~~~~-~~~~~~ 152 (660)
++.|+++....+++......+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..||... .+.|..++.. ..+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 456777777776662211111 1112 334444556666656667777777777665432 2223222221 223444
Q ss_pred HHHHHHHHHHhCCCCCh
Q 048281 153 VKKIHGLVFKLGLDLDV 169 (660)
Q Consensus 153 a~~~~~~~~~~g~~~~~ 169 (660)
..++.+.+++.|..++.
T Consensus 93 ~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 93 TTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 56677777777766654
No 355
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.37 E-value=1.4e+02 Score=17.37 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=19.5
Q ss_pred HHHHHHHHcCcccCce-eeccCCChhhhhHhhhHHHHHh
Q 048281 615 SLTARLREHGDCCAGT-LFDSDSTASGFEKHRLYLEEVI 652 (660)
Q Consensus 615 ~l~~~m~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~ 652 (660)
+-.+.+++.|+.|.+- ....+ -..+|..++.+..||
T Consensus 7 selqalkkegfspeelaalese--lqalekklaalkskl 43 (48)
T 1g6u_A 7 SELQALKKEGFSPEELAALESE--LQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3346788899999762 11111 223555555555544
No 356
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.15 E-value=2.3e+02 Score=24.19 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=12.0
Q ss_pred HHHHhHcCCChhHHHHHHc
Q 048281 73 LINMYSKCCQMKYALFVFN 91 (660)
Q Consensus 73 ll~~~~~~g~~~~A~~~~~ 91 (660)
.+...++.|+.+-+..+++
T Consensus 39 ~L~~A~~~~~~~~v~~Ll~ 57 (228)
T 2dzn_A 39 PLHWSVSFQAHEITSFLLS 57 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444456677777777776
No 357
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.08 E-value=1.9e+02 Score=23.80 Aligned_cols=24 Identities=0% Similarity=0.095 Sum_probs=10.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 048281 206 MVNGYAQIGEFHKALEVFRRMSKE 229 (660)
Q Consensus 206 li~~~~~~~~~~~A~~~~~~m~~~ 229 (660)
++..+...+..-.|.++++.+.+.
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhh
Confidence 333344444444444555544443
Done!