Citrus Sinensis ID: 048287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MLDKMPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQTTTHQTQAAAAAAN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccccccccccccccccHHHccccccccccccEEEEEcHHHHHHcccEEEHHHcccccccccccHccccccccccHccccccccEEEEEEcccccccccccHHccccccHHHHHHcccccccccEEccccccEEEHccHHHHHcccccccEEcccccEEEcccccHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHHHHccccccccccccHHHHHHHHcccccccHHHHHHcc
Coil and Loop (DISEMBL)
mldkmpedtipngfvqnsviagsnnppntaakkkrnlpgtpdpeaevialspktlMATNRFLCEicgkgfqrdqnlqlhrrghnlpwklkqrtskevrkrvyvcpektcvhhhpsralgdltgiKKHFcrkhgekkwkcekcskryavqsdwkahsktcgtreykcdcgtvfsrrdsfITHRAFCDALAEETARVNAASSMNSlangsisyhfmgtplgpsvaqhfssifkpipgggadetiDQTRRGLslwmapgsqghetvgsnLTEIQQLgsvsseamygdhpppsdyhfnwvfgnnkqssnnaaeapaiasaslpltgvKEAAAtashhhqlvsvnvpslyssqqqQTTTHQTQAAAAAAN
Flexible Loop (DISEMBL)
mldkmpedtipNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRdqnlqlhrrghnlpwklkqrtskevrKRVYVCpektcvhhhpsralgdltgiKKHFCRKhgekkwkcekcskryavqsdwkahsktcgtreykcdcgtVFSRRDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQTTTHQTQAAAAAAN
Low Complexity Region (SEG)
MLDKMPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQssnnaaeapaiasasLPLTGVKEAAATASHHHQLVSVNVPSLYSSqqqqttthqtqaaaaaaN
Disordered region (IsUnstruct)
**********************************************VIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNA******LANGSISYHFMGTPLGPSVAQHFSSIFKPIP**************LSLW**************************************YHFNWVFG*******************************************************************
Disordered Region (DISOPRED)
*****PE***PNG*****************AKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETAR***************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MLDKMPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSL*********************
Disordered Region (DISPRO)
************************************LPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIP************************************************GD*PPPSDYHFN***********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDKMPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQTTTHQTQAAAAAAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	yes	no	0.846	0.610	0.601	1e-107
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.657	0.515	0.648	1e-102
Q700D2	503	Zinc finger protein JACKD	no	no	0.476	0.345	0.817	4e-87
Q943I6	522	Zinc finger protein STOP1	no	no	0.463	0.323	0.326	2e-22
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.394	0.288	0.335	4e-21
Q2QX40	465	Zinc finger protein STAR3	no	no	0.378	0.296	0.346	1e-19
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.380	0.458	0.350	3e-15
O43313	823	ATM interactor OS=Homo sa	yes	no	0.389	0.172	0.320	6e-13
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.326	0.145	0.314	3e-12
Q14590	738	Zinc finger protein 235 O	no	no	0.435	0.215	0.261	3e-08

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/346 (60%), Positives = 237/346 (68%), Gaps = 37/346 (10%)

Query: 25  NPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN 84
           NPP    KKKRNLPG PDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN
Sbjct: 36  NPP--LVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN 93

Query: 85  LPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 144
           LPWKLKQRTSKEVRKRVYVCPEK+CVHHHP+RALGDLTGIKKHFCRKHGEKKWKCEKC+K
Sbjct: 94  LPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAK 153

Query: 145 RYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSL 204
           RYAVQSDWKAHSKTCGTREY+CDCGT+FSRRDSFITHRAFCDALAEETAR+NAAS + S 
Sbjct: 154 RYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSF 213

Query: 205 ---ANGSISYHF-MGTPL-------------GPSVAQHFSSIFKPIPGGGAD-ETIDQTR 246
              A  +++YH+ MGT +             GP   QH      PI     D + + +  
Sbjct: 214 AATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMKPA 273

Query: 247 RGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQSSNN 306
             LSLW           G N+   QQ+ ++        H P  DY  NWVFGN    +NN
Sbjct: 274 STLSLWS----------GGNINHHQQV-TIEDRMAPQPHSPQEDY--NWVFGN----ANN 316

Query: 307 AAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQT 352
             E    + + +          +  + +   S++VPSL+SS  Q T
Sbjct: 317 HGELITTSDSLITHDNNINIVQSKENANGATSLSVPSLFSSVDQIT 362

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/296 (64%), Positives = 209/296 (70%), Gaps = 56/296 (18%)

Query: 25  NPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN 84
           NPP    KKKRNLPG PDPEAEVIALSP TLMATNRFLCE+CGKGFQRDQNLQLHRRGHN
Sbjct: 32  NPP--LVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHN 89

Query: 85  LPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 144
           LPWKLKQRTSKEVRKRVYVCPEKTCVHHH SRALGDLTGIKKHFCRKHGEKKW CEKC+K
Sbjct: 90  LPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAK 149

Query: 145 RYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSL 204
           RYAVQSDWKAHSKTCGTREY+CDCGT+FSRRDSFITHRAFCDALAEETA++NA S +N L
Sbjct: 150 RYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGL 209

Query: 205 AN----GSISYHF---MGT---PLGPSVAQ------HFSSIFKPIPGGGADETIDQTRRG 248
           A     GS++ ++   MGT   PL P V Q      H    F+P            T   
Sbjct: 210 AAAGAPGSVNLNYQYLMGTFIPPLQPFVPQPQTNPNHHHQHFQP-----------PTSSS 258

Query: 249 LSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQSS 304
           LSLWM          G ++                  PP     ++WVFGN K +S
Sbjct: 259 LSLWM----------GQDIA-----------------PPQPQPDYDWVFGNAKAAS 287

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  322 bits (824), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 143/175 (81%), Positives = 162/175 (92%), Gaps = 1/175 (0%)

Query: 29  TAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWK 88
           ++AKKKRN PGTPDP+A+VIALSP TLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWK
Sbjct: 50  SSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK 109

Query: 89  LKQRTSKEV-RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA 147
           LKQR+ +EV +K+VY+CP KTCVHH  SRALGDLTGIKKH+ RKHGEKKWKCEKCSK+YA
Sbjct: 110 LKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYA 169

Query: 148 VQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMN 202
           VQSDWKAH+KTCGTREYKCDCGT+FSR+DSFITHRAFCDAL EE AR+++ S+ N
Sbjct: 170 VQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNN 224

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 24/193 (12%)

Query: 47  VIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRV----- 101
           V+ L  + ++A +   C ICGKGF+RD NL++H RGH   +K     +K  +        
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 102 ---YVCPEKTC---VHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC-SKRYAVQSDWKA 154
              Y CP   C     H   + L  +  +K H+ R H +K + C +C +K+++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 155 HSKTCGTREYKCDCGTVFSRRDSFITHRAFCD----ALAEETARVNAAS-------SMNS 203
           H K CG  ++ C CGT FSR+D    H A       AL  +  +V  AS       +MN+
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKVTGASEQPQGSEAMNT 447

Query: 204 LANGSISYHFMGT 216
           +  GS  Y+F G+
Sbjct: 448 MV-GSAGYNFPGS 459

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 41  PDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKR 100
           P    E++ L  + ++A +   C ICGKGF+RD NL++H RGH   +K     +K  ++ 
Sbjct: 224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKES 283

Query: 101 V----------YVCPEKTC---VHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC-SKRY 146
           V          Y CP   C     H   + L  +  +K H+ R H +K + C +C +K++
Sbjct: 284 VPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKF 343

Query: 147 AVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAF 184
           +V +D K H K CG  ++ C CGT FSR+D    H A 
Sbjct: 344 SVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIAL 381

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 47  VIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWK-----------LKQRTSK 95
           V+ L    ++A +   C ICGKGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 96  EVRKRVYVCPEKTCVH---HHPSRALGDLTGIKKHFCRKHGEKKWKCEKC-SKRYAVQSD 151
              +R Y CP   C     H   + L  +  +K H+ R H EK+  C +C +KR++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 152 WKAHSKTCGTREYKCDCGTVFSRRDSFITHRAF 184
            K H K CG   + C CGT FSR+D    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 44  EAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRV-- 101
           +A  I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + R   
Sbjct: 128 KAYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAML 187

Query: 102 ----YVCPEKTCVHH--HP-SRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKA 154
               Y C E  C +H  HP S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ 
Sbjct: 188 GIPCYCCVE-GCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRT 246

Query: 155 HSKTCGTREYKCDCGTVFSRRDSFITH-RAF 184
           H K CG R + C CG+ F  + S   H +AF
Sbjct: 247 HEKNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 11/153 (7%)

Query: 38  PGTPDPEA-EVIALSPKTLMATNR--FLCEI--CGKGFQRDQNLQLHR-RGHNLPWKLKQ 91
           P  P P A E+I  S   L    R   LC +  CGK       L +H  + H L   +  
Sbjct: 58  PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVN 117

Query: 92  RTSKEVRK---RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAV 148
            T ++  K   + Y CP + C    P R     + +K+HF + H EKK KC KCS  Y  
Sbjct: 118 PTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGT 176

Query: 149 QSDWKAHSKTCGTREYKCDCGTVFSRRDSFITH 181
           + D K H++ CG + ++C CG  ++ R +  +H
Sbjct: 177 EWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 61  FLCEI--CGKGFQRDQNLQLHR-RGHNLPWKLKQRTSKE---VRKRVYVCPEKTCVHHHP 114
            LC +  CGK       L +H  + H L   +   T ++      + Y CP K C    P
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPTIRKDLTTAPKFYCCPIKGC-PRGP 138

Query: 115 SRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSR 174
            R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  ++ 
Sbjct: 139 DRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCPYAS 197

Query: 175 RDSFITH 181
           R +  +H
Sbjct: 198 RTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q14590|ZN235_HUMAN Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 32/191 (16%)

Query: 61  FLCEICGKGFQRDQNLQLHRR-------------GHNLPWKLKQRTSKEVR--KRVYVCP 105
           F C +CGKGF +    Q H+R             G    W L     + V   ++ Y C 
Sbjct: 515 FRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCE 574

Query: 106 EKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY 164
           E         +     + ++ H     GEK +KC+ C KR++  S  +AH +   G + Y
Sbjct: 575 E-------CGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPY 627

Query: 165 KCD-CGTVFSRRDSFITHRAF--------CDALAEETARVNAASSMNSLANGSISYHFMG 215
           KCD CG  FS+R +   H+          C+   +E +     S+   +  G   Y    
Sbjct: 628 KCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQ 687

Query: 216 TPLGPSVAQHF 226
              G S A HF
Sbjct: 688 CGKGFSQASHF 698

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
359485408	450	PREDICTED: zinc finger protein MAGPIE-li	0.909	0.737	0.747	1e-147
302143346	427	unnamed protein product [Vitis vinifera]	0.865	0.740	0.722	1e-138
224132860	479	predicted protein [Populus trichocarpa]	0.868	0.661	0.727	1e-134
147819361	403	hypothetical protein VITISV_003666 [Viti	0.780	0.707	0.754	1e-127
356545021	466	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.920	0.721	0.629	1e-126
356546983	468	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.915	0.713	0.642	1e-125
356542167	475	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.928	0.713	0.635	1e-122
255553609	437	nucleic acid binding protein, putative [	0.810	0.677	0.708	1e-122
356515128	472	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.835	0.646	0.684	1e-119
297848602	509	hypothetical protein ARALYDRAFT_470357 [	0.852	0.611	0.6	1e-106

>gi|359485408|ref|XP_002275400.2| PREDICTED: zinc finger protein MAGPIE-like [Vitis vinifera]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/360 (74%), Positives = 294/360 (81%), Gaps = 28/360 (7%)

Query: 5   MPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCE 64
           M  + IPNGF+QN +  G +NPP    KKKRNLPGTPDPEAEVIALSPKTLMATNRFLCE
Sbjct: 1   MAAEAIPNGFIQNPI--GGSNPP--TIKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCE 56

Query: 65  ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGI 124
           ICGKGFQRDQNLQLHRRGHNLPWKLKQR+SKE RKRVYVCPEKTCVHHHPSRALGDLTGI
Sbjct: 57  ICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKTCVHHHPSRALGDLTGI 116

Query: 125 KKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAF 184
           KKHFCRKHGEKKWKCEKCSKRYAVQSDWKAH+KTCGTREYKCDCGT+FSRRDSFITHRAF
Sbjct: 117 KKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHTKTCGTREYKCDCGTLFSRRDSFITHRAF 176

Query: 185 CDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQ 244
           CDALAEETARV AAS++N   NG+I+YHFMGT L PS+ QHFSSIFKPI     DE  DQ
Sbjct: 177 CDALAEETARVTAASNIN---NGTINYHFMGTSLAPSMPQHFSSIFKPISSN--DEATDQ 231

Query: 245 TRRGLSLWMAPGSQGHETVGSNLTEIQQL-GSVSSEAMYGD------HPPPSDYHFNWVF 297
           TRRGLSLWM  GSQGHET+G+NL EI QL  S+S  ++Y D      +PPPS Y  +WVF
Sbjct: 232 TRRGLSLWMGQGSQGHETMGTNLQEIHQLRSSMSPGSVYADPLVSCSNPPPSSYQLSWVF 291

Query: 298 GNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQTTTHQT 357
           G +KQSSNN  E    +S SLPL+ VKEAA +     Q+VS  VPSLYSSQ     +HQT
Sbjct: 292 G-SKQSSNN-TEDQLTSSTSLPLSNVKEAAGS-----QIVS--VPSLYSSQHH---SHQT 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143346|emb|CBI21907.3| unnamed protein product [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/357 (72%), Positives = 278/357 (77%), Gaps = 41/357 (11%)

Query: 1   MLDKMPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNR 60
           ML KM  + IPNGF+QN +  G +NPP    KKKRNLPGTPDPEAEVIALSPKTLMATNR
Sbjct: 1   MLQKMAAEAIPNGFIQNPI--GGSNPP--TIKKKRNLPGTPDPEAEVIALSPKTLMATNR 56

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
           FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQR+SKE RKRVYVCPEKTCVHHHPSRALGD
Sbjct: 57  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKTCVHHHPSRALGD 116

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFIT 180
           LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAH+KTCGTREYKCDCGT+FSRRDSFIT
Sbjct: 117 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHTKTCGTREYKCDCGTLFSRRDSFIT 176

Query: 181 HRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADE 240
           HRAFCDALAEETARV AAS++N   NG+I+YHFMGT L PS+ QHFSSIFKPI     DE
Sbjct: 177 HRAFCDALAEETARVTAASNIN---NGTINYHFMGTSLAPSMPQHFSSIFKPISSN--DE 231

Query: 241 TIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNN 300
             DQTRRGLSLWM  GSQGHET+G+NL EI QL S  S                      
Sbjct: 232 ATDQTRRGLSLWMGQGSQGHETMGTNLQEIHQLRSSMSPG-------------------- 271

Query: 301 KQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQTTTHQT 357
             SS+N  E    +S SLPL+ VKEAA +     Q+VS  VPSLYSSQ     +HQT
Sbjct: 272 --SSSNNTEDQLTSSTSLPLSNVKEAAGS-----QIVS--VPSLYSSQHH---SHQT 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132860|ref|XP_002327898.1| predicted protein [Populus trichocarpa] gi|222837307|gb|EEE75686.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/356 (72%), Positives = 278/356 (78%), Gaps = 39/356 (10%)

Query: 12  NGFVQNSVIAGSNNPPNTAAKKKRNLPGTPD---------PEAEVIALSPKTLMATNRFL 62
           NGFV+N V  G +NPP  A KKKRNLPGTP          PEAEVIALSPKTLMATNRFL
Sbjct: 12  NGFVENPV--GGSNPP--ALKKKRNLPGTPGKLEASFYSYPEAEVIALSPKTLMATNRFL 67

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
           CEICGKGFQRDQNLQLHRRGHNLPWKLKQRT+KEV+KRVYVCPEKTCVHHHPSRALGDLT
Sbjct: 68  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVKKRVYVCPEKTCVHHHPSRALGDLT 127

Query: 123 GIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHR 182
           GIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGT+FSRRDSFITHR
Sbjct: 128 GIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHR 187

Query: 183 AFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETI 242
           AFCDALAEETARVNA SS+N+L  GSI+YH MG PLGP++AQHFSSIFKPI         
Sbjct: 188 AFCDALAEETARVNAVSSINNLTAGSINYHLMGNPLGPNMAQHFSSIFKPI-----SSND 242

Query: 243 DQTRR-GLSLWMAPG--SQGHETVGSNLTEIQQLGSV-SSEAMYGD-------HPPPSD- 290
            QTR+ G+SLWM  G        +G+N+ EI QL S  SS AM+GD       H PPSD 
Sbjct: 243 HQTRQGGVSLWMNQGVPQVSEALMGNNIQEIHQLRSANSSGAMFGDLLAVSCSHAPPSDH 302

Query: 291 YHFNW-VFGNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLY 345
           Y FNW VFG NK SSNNA E    ++  LPLT VKEAAA +    QL S  VPSLY
Sbjct: 303 YQFNWPVFG-NKISSNNAHEE-LTSTLVLPLTNVKEAAAAS----QLAS--VPSLY 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819361|emb|CAN60170.1| hypothetical protein VITISV_003666 [Vitis vinifera]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/309 (75%), Positives = 254/309 (82%), Gaps = 24/309 (7%)

Query: 56  MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPS 115
           MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQR+SKE RKRVYVCPEKTCVHHHPS
Sbjct: 1   MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKRVYVCPEKTCVHHHPS 60

Query: 116 RALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRR 175
           RALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAH+KTCGTREYKCDCGT+FSRR
Sbjct: 61  RALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHTKTCGTREYKCDCGTLFSRR 120

Query: 176 DSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPG 235
           DSFITHRAFCDALAEETARV AAS++N   NG+I+YHFMGT L PS+ QHFSSIFKPI  
Sbjct: 121 DSFITHRAFCDALAEETARVTAASNIN---NGTINYHFMGTSLAPSMPQHFSSIFKPISS 177

Query: 236 GGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQL-GSVSSEAMYGD------HPPP 288
              DE  DQTRRGLSLWM  GSQGHET+G+NL EI QL  S+S  ++Y D      +PPP
Sbjct: 178 N--DEATDQTRRGLSLWMGQGSQGHETMGTNLQEIHQLRSSMSPGSVYADPLVSCSNPPP 235

Query: 289 SDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQ 348
           S Y  +WVFG +KQSSNN  E    +S SLPL+ VKEAA +     Q+VS  VPSLYSSQ
Sbjct: 236 SSYQLSWVFG-SKQSSNN-TEDQLTSSTSLPLSNVKEAAGS-----QIVS--VPSLYSSQ 286

Query: 349 QQQTTTHQT 357
                +HQT
Sbjct: 287 HH---SHQT 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545021|ref|XP_003540944.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Glycine max]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/375 (62%), Positives = 266/375 (70%), Gaps = 39/375 (10%)

Query: 5   MPEDTIPNGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCE 64
           M     P     ++  +  NNPP  + K+KRNLPG PDPEA+VIALSPKTLMATNRFLCE
Sbjct: 7   MTNIAFPQNLTASAASSDHNNPP-PSLKRKRNLPGNPDPEAQVIALSPKTLMATNRFLCE 65

Query: 65  ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGI 124
            CGKGFQRDQNLQLHRRGHNLPWKLKQRT KE RKRVYVCPEK+CVHH PSRALGDLTGI
Sbjct: 66  TCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGI 125

Query: 125 KKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAF 184
           KKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGT+FSRRDSFITHRAF
Sbjct: 126 KKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAF 185

Query: 185 CDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQ 244
           CDALAEETARVNAAS +N+   G+I Y+ MGT LGP++A HF SIFKPI     DET +Q
Sbjct: 186 CDALAEETARVNAASDINTSLGGNIGYNIMGTSLGPNMATHFPSIFKPI--SSTDETSNQ 243

Query: 245 TRRGLSLWMA-PGSQGHET-VGSNLTEIQQLGSVSSEA--MYGDH--------PPPSDYH 292
           T RGL LWM    SQ  ET V +N  EI QLGS +S +  MYG +        PP ++Y 
Sbjct: 244 TSRGLPLWMGQTSSQAQETMVNTNFREIHQLGSATSSSGTMYGGNSILQYSNLPPSNNYQ 303

Query: 293 FNWVFGNNKQSSNNAAE--APAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQ 350
            +WVFG    +S+N  E       + SLP+                 + +VPSLY SQ  
Sbjct: 304 LSWVFGTKISNSSNNQELTTNTTTTTSLPIG----------------NSSVPSLYCSQ-- 345

Query: 351 QTTTHQTQAAAAAAN 365
               HQ Q   ++AN
Sbjct: 346 ----HQPQQTCSSAN 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546983|ref|XP_003541898.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Glycine max]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/383 (64%), Positives = 274/383 (71%), Gaps = 49/383 (12%)

Query: 5   MPEDTIPNGFV-QNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLC 63
           M +  I N F  QN   A SNN P T  K+KRNLPG PDPEAEVI LSPKTLMATNRF+C
Sbjct: 1   MDDGEISNAFPHQNPSTAASNNQPPTL-KRKRNLPGNPDPEAEVIVLSPKTLMATNRFVC 59

Query: 64  EICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTG 123
           EIC KGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTG
Sbjct: 60  EICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTG 119

Query: 124 IKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRA 183
           IKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGT+FSRRDSFITHRA
Sbjct: 120 IKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRA 179

Query: 184 FCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFK--------PIPG 235
           FCDALAEETARVNAAS+++       +Y  M  PLGP++   FSS FK        P PG
Sbjct: 180 FCDALAEETARVNAASNIS-------NYSIMQNPLGPNMTTQFSSFFKPNSCSDQEPAPG 232

Query: 236 GGADETIDQTRRGLSLWMAPGSQGHETVG--SNLTEIQQLGSVSS-EAMYG--------- 283
                    + +GLSLWM   SQ HE +   +NL E  QLGSV+S  A+YG         
Sbjct: 233 N------QTSNKGLSLWMTQTSQAHEAMANNNNLHEFHQLGSVTSPTAIYGTSGNPLASC 286

Query: 284 DHPPPSDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTG--VKEAAATASHHHQLVSVNV 341
            +PPPS+Y  NWVFGN  + S+N +     ++ASLPL    VK+         QL+S  V
Sbjct: 287 SNPPPSNYQLNWVFGN--KLSSNGSHQELTSTASLPLVNNIVKDNPNL-----QLIS--V 337

Query: 342 PSLYSSQQQQTTTHQTQAAAAAA 364
           PSLYSSQ Q   +HQ  +A  +A
Sbjct: 338 PSLYSSQHQ---SHQASSANMSA 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542167|ref|XP_003539541.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like [Glycine max]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/381 (63%), Positives = 273/381 (71%), Gaps = 42/381 (11%)

Query: 5   MPEDTIPNGFV-QNSVIAGSNN---PPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNR 60
           M +  I N F  QN  IA SNN   PP    K+KRNLPG PDP+AEVI LSPKTLMATNR
Sbjct: 1   MDDGEISNVFPHQNPSIAASNNHDQPP--ILKRKRNLPGNPDPDAEVITLSPKTLMATNR 58

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
           F+CEIC KGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD
Sbjct: 59  FVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 118

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFIT 180
           LTGIKKHFCRKHGEKKW+CEKCSKRYAVQSDWKAHSKTCGTREYKCDCGT+FSRRDSFIT
Sbjct: 119 LTGIKKHFCRKHGEKKWRCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFIT 178

Query: 181 HRAFCDALAEETARVNAASSMNSLANGSISYHFMGTPLGPSVAQHFSSIFKP--IPGGGA 238
           HRAFCDALAE+TARVNAAS++++       Y  M  P+G  +A HFSS FKP   P    
Sbjct: 179 HRAFCDALAEQTARVNAASNISN-------YSIMQNPVGSDMATHFSSFFKPNSCPDQEP 231

Query: 239 DETIDQTRRGLSLWMAPGSQGH-ETV--GSNLTEIQQLGSVSS-EAMYG---------DH 285
                 + +GLSLWM   SQ H ET+   +NL E  QLGSV+S  A+YG          +
Sbjct: 232 APGNQTSNKGLSLWMTQTSQAHHETMVNNNNLHEFYQLGSVTSPTAIYGTSGNPLASCSN 291

Query: 286 PPPSDYHFNWVFGNNKQSSNNAAEAPAIASASLPLTG--VKEAAATASHHHQLVSVNVPS 343
           PPPS+Y  NWV GN  + S N +     ++ASLPL    VK+          L  ++VPS
Sbjct: 292 PPPSNYQLNWVLGN--KLSTNGSHQELTSTASLPLVNNIVKDNP-------NLQLISVPS 342

Query: 344 LYSSQQQQTTTHQTQAAAAAA 364
           LYSSQ Q   +HQT +A  +A
Sbjct: 343 LYSSQHQ---SHQTTSANMSA 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553609|ref|XP_002517845.1| nucleic acid binding protein, putative [Ricinus communis] gi|223542827|gb|EEF44363.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/322 (70%), Positives = 247/322 (76%), Gaps = 26/322 (8%)

Query: 56  MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPS 115
           MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPS
Sbjct: 1   MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPS 60

Query: 116 RALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRR 175
           RALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGT+FSRR
Sbjct: 61  RALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRR 120

Query: 176 DSFITHRAFCDALAEETARVNAASSMNSLA--NGSISYHFMGTPLGPSVAQHFSSIFKPI 233
           DSFITHRAFCDALAEETARVNAAS++N LA    + +YH MG P+GP++AQHFSSIFKPI
Sbjct: 121 DSFITHRAFCDALAEETARVNAASNINGLAATANNFNYHLMGAPIGPNMAQHFSSIFKPI 180

Query: 234 PGGGADETIDQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPP------ 287
           P    D T+DQTRRGLSLWM   SQ HE +     EI QLGS+ S      H P      
Sbjct: 181 PSNN-DHTMDQTRRGLSLWM---SQSHEPIAQ---EIHQLGSMGSSGAIFHHDPLNNSCS 233

Query: 288 ---PSDYHFNWVFGNNKQSSNNAAEAPAIAS--ASLPLTGVKEAAATASHHHQLVSVNVP 342
              P+DYH +W    +K SS NA     + S  +SLPL  VKEAAA      QLVS  VP
Sbjct: 234 NSSPTDYHLSWPIFGSKLSSTNAHHHEELTSTTSSLPLNNVKEAAAAV----QLVS--VP 287

Query: 343 SLYSSQQQQTTTHQTQAAAAAA 364
           SLYS+QQQ   T  +   +A A
Sbjct: 288 SLYSTQQQPNQTAPSANMSATA 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515128|ref|XP_003526253.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/326 (68%), Positives = 248/326 (76%), Gaps = 21/326 (6%)

Query: 14  FVQN---SVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGF 70
           F QN   S  +  +N P +A ++KRNLPG PDPEAEVIALSPKTLMATNRFLCE CGKGF
Sbjct: 12  FPQNLTASAASNDHNKPPSALRRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGF 71

Query: 71  QRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCR 130
           QRDQNLQLHRRGHNLPWKLKQRT KE RKRVYVCPEK+CVHH PSRALGDLTGIKKHFCR
Sbjct: 72  QRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCR 131

Query: 131 KHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAE 190
           KHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGT+FSRRDSFITHRAFCDALAE
Sbjct: 132 KHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAE 191

Query: 191 ETARVNAASSMN-SLANGSISYHFMGTPLGPSVAQHFSSIFKPIPGGGADETIDQTRRGL 249
           ETARVNAAS +N SL   +I Y+ MGT LGP++A HF SIFKP+     DET +QT RGL
Sbjct: 192 ETARVNAASDINTSLGGNNIGYNIMGTSLGPNMASHFPSIFKPV--SSTDETSNQTSRGL 249

Query: 250 SLWMA--PGSQGHE--TVGSNLTEIQQL---GSVSSEAMYGDH--------PPPSDYHFN 294
            LWM+    SQ  E   V +NL EI QL    S SS  +Y  +        PP ++Y  +
Sbjct: 250 PLWMSQITSSQAQERIMVNTNLREIHQLGSATSSSSGTIYDGNSILQCPNLPPSNNYQLS 309

Query: 295 WVFGNNKQSSNNAAEAPAIASASLPL 320
           WVFG    +++N  E     + SLPL
Sbjct: 310 WVFGTKISNNSNNQELTTSTTTSLPL 335

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848602|ref|XP_002892182.1| hypothetical protein ARALYDRAFT_470357 [Arabidopsis lyrata subsp. lyrata] gi|297338024|gb|EFH68441.1| hypothetical protein ARALYDRAFT_470357 [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/350 (60%), Positives = 240/350 (68%), Gaps = 39/350 (11%)

Query: 23  SNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG 82
           S NPP    KKKRNLPG PDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG
Sbjct: 33  SLNPP--LVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG 90

Query: 83  HNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC 142
           HNLPWKLKQRTSKEVRKRVYVCPEK+CVHHHP+RALGDLTGIKKHFCRKHGEKKWKCEKC
Sbjct: 91  HNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKC 150

Query: 143 SKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMN 202
           +KRYAVQSDWKAHSKTCGTREY+CDCGT+FSRRDSFITHRAFCDALAEETAR+NAAS + 
Sbjct: 151 AKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLK 210

Query: 203 SLA---NGSISYHF-MGTPLGPSVAQHFSSIFK------------PIPGGGAD----ETI 242
           SLA     +++YH+ MGT +    +Q   S               PIP    D    + +
Sbjct: 211 SLAATAGSNLNYHYLMGTLIPSPSSQPPPSFPFGPPQPQHHHQHFPIPTTTFDHHHHQDV 270

Query: 243 DQTRRGLSLWMAPGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGNNKQ 302
            +    LSLWM          G N+   QQ+ ++        H P  DY  NWVFGN   
Sbjct: 271 MKPASSLSLWM----------GGNINHHQQV-TIEDRIAPQPHSPNEDY--NWVFGN--- 314

Query: 303 SSNNAAEAPAIASASLPLTGVKEAAATASHHHQLVSVNVPSLYSSQQQQT 352
            +NN  E    + + +          +  + +   S++VPSL+SS  Q T
Sbjct: 315 -ANNRGELITTSDSLITHDHNINIVQSKENTNAATSLSVPSLFSSVDQIT 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.860	0.620	0.629	1e-100
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.608	0.476	0.753	1.6e-96
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.490	0.396	0.827	2.4e-85
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.515	0.376	0.797	4.4e-84
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.509	0.408	0.786	5e-83
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.550	0.5	0.724	2.8e-82
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.586	0.414	0.680	7.4e-82
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.520	0.426	0.745	1.2e-81
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.490	0.355	0.806	1.5e-81
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.619	0.483	0.631	8.5e-81

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 211/335 (62%), Positives = 233/335 (69%)

Query:    23 SNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG 82
             S NPP    KKKRNLPG PDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG
Sbjct:    34 SLNPP--LVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG 91

Query:    83 HNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC 142
             HNLPWKLKQRTSKEVRKRVYVCPEK+CVHHHP+RALGDLTGIKKHFCRKHGEKKWKCEKC
Sbjct:    92 HNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKC 151

Query:   143 SKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMN 202
             +KRYAVQSDWKAHSKTCGTREY+CDCGT+FSRRDSFITHRAFCDALAEETAR+NAAS + 
Sbjct:   152 AKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLK 211

Query:   203 SLAN--GS-ISYHF-MGTPL-GPSVAQHFSSIF-KPIPGGGADETIDQTRRGLSLW--MA 254
             S A   GS ++YH+ MGT +  PS+ Q  S  F  P P          T         M 
Sbjct:   212 SFAATAGSNLNYHYLMGTLIPSPSLPQPPSFPFGPPQPQHHHHHQFPITTNNFDHQDVMK 271

Query:   255 PGSQGHETVGSNLTEIQQLGSVSSEAMYGDHPPPSDYHFNWVFGN--NKQXXXXXXXXXX 312
             P S      G N+   QQ+ ++        H P  DY  NWVFGN  N            
Sbjct:   272 PASTLSLWSGGNINHHQQV-TIEDRMAPQPHSPQEDY--NWVFGNANNHGELITTSDSLI 328

Query:   313 XXXXXLPLTGVKEAAATASHHHQLVSVNVPSLYSS 347
                  + +   KE A  A+      S++VPSL+SS
Sbjct:   329 THDNNINIVQSKENANGAT------SLSVPSLFSS 357

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 931 (332.8 bits), Expect = 1.6e-96, Sum P(2) = 1.6e-96
 Identities = 180/239 (75%), Positives = 193/239 (80%)

Query:    25 NPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN 84
             NPP    KKKRNLPG PDPEAEVIALSP TLMATNRFLCE+CGKGFQRDQNLQLHRRGHN
Sbjct:    32 NPP--LVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHN 89

Query:    85 LPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK 144
             LPWKLKQRTSKEVRKRVYVCPEKTCVHHH SRALGDLTGIKKHFCRKHGEKKW CEKC+K
Sbjct:    90 LPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAK 149

Query:   145 RYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSL 204
             RYAVQSDWKAHSKTCGTREY+CDCGT+FSRRDSFITHRAFCDALAEETA++NA S +N L
Sbjct:   150 RYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGL 209

Query:   205 AN----GSISYHF---MGT---PLGPSVAQHFSSIFKPIPGGGADETIDQTRRGLSLWM 253
             A     GS++ ++   MGT   PL P V Q  ++     P          T   LSLWM
Sbjct:   210 AAAGAPGSVNLNYQYLMGTFIPPLQPFVPQPQTN-----PNHHHQHFQPPTSSSLSLWM 263

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 149/180 (82%), Positives = 167/180 (92%)

Query:    22 GSNNP-PNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHR 80
             G+ NP PN+  KKKRNLPG PDPE+EVIALSPKTL+ATNRF+CEIC KGFQRDQNLQLHR
Sbjct:    23 GNQNPLPNSTGKKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHR 82

Query:    81 RGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE 140
             RGHNLPWKL+Q+++KEV+K+VYVCPE +CVHH PSRALGDLTGIKKHFCRKHGEKKWKC+
Sbjct:    83 RGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD 142

Query:   141 KCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASS 200
             KCSK+YAVQSDWKAHSK CGT+EYKCDCGT+FSRRDSFITHRAFCDALAEE AR + + S
Sbjct:   143 KCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENARSHHSQS 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 150/188 (79%), Positives = 164/188 (87%)

Query:    12 NGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQ 71
             +G    S     N  P +  KKKRNLPG PDP+AEVIALSPKTLMATNRF+CEIC KGFQ
Sbjct:    12 SGDASVSSTGNQNLTPKSVGKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQ 71

Query:    72 RDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK 131
             RDQNLQLHRRGHNLPWKL+QR++KEVRK+VYVCP   CVHH PSRALGDLTGIKKHFCRK
Sbjct:    72 RDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRK 131

Query:   132 HGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEE 191
             HGEKKWKCEKCSK+YAVQSDWKAHSK CGT+EYKCDCGT+FSRRDSFITHRAFCDALAEE
Sbjct:   132 HGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEE 191

Query:   192 TARVNAAS 199
             +A+ +  S
Sbjct:   192 SAKNHTQS 199

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 147/187 (78%), Positives = 165/187 (88%)

Query:    27 PNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLP 86
             P ++ K+KRN PG PDPEAEV+ALSPKTLMATNRF+CE+C KGFQRDQNLQLH+RGHNLP
Sbjct:    58 PQSSLKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLP 117

Query:    87 WKLKQRTSKEV-RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKR 145
             WKLKQR++K+V RK+VYVCPE  CVHHHPSRALGDLTGIKKHF RKHGEKKWKCEKCSK+
Sbjct:   118 WKLKQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKK 177

Query:   146 YAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSMNSLA 205
             YAVQSDWKAH+KTCGT+EYKCDCGT+FSRRDSFITHRAFCDALAEE+AR      M   +
Sbjct:   178 YAVQSDWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMPNPIMIQAS 237

Query:   206 NGSISYH 212
             N    +H
Sbjct:   238 NSPHHHH 244

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 150/207 (72%), Positives = 174/207 (84%)

Query:    12 NGFVQNSVIAGSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQ 71
             +GF  N + +   +      KKKR LPG PDP+AEVIALSPKTL+ATNRF+CEIC KGFQ
Sbjct:    34 SGF-HNVISSVCTHTETHKPKKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQ 92

Query:    72 RDQNLQLHRRGHNLPWKLKQRTSKEV-RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCR 130
             RDQNLQLHRRGHNLPWKLKQ+ +KE  +K+VYVCPE  C HHHPSRALGDLTGIKKHFCR
Sbjct:    93 RDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCR 152

Query:   131 KHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAE 190
             KHGEKKWKCEKCSK YAVQSDWKAH+K CGTR+Y+CDCGT+FSR+D+FITHRAFCDALAE
Sbjct:   153 KHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAE 212

Query:   191 ETARVNAASSMNSLANGSISY---HFM 214
             E+AR+++ SS N L N + ++   HFM
Sbjct:   213 ESARLHSTSSSN-LTNPNPNFQGHHFM 238

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 149/219 (68%), Positives = 176/219 (80%)

Query:    12 NGFVQNSVIAGSNNPPNTAA---KKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGK 68
             N F +          PN++A   KK+RN PG P+P+AEV+ALSPKTLMATNRF+C++C K
Sbjct:    31 NDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNK 90

Query:    69 GFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHF 128
             GFQR+QNLQLHRRGHNLPWKLKQ+++KEV+++VY+CPE TCVHH PSRALGDLTGIKKH+
Sbjct:    91 GFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHY 150

Query:   129 CRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDAL 188
              RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGT+EY+CDCGT+FSRRDS+ITHRAFCDAL
Sbjct:   151 YRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDAL 210

Query:   189 AEETARVNAAS--SMNSLANGSISYHFMGTPLGPSVAQH 225
              +ETAR    S  SM + ++G  S    G   G S   H
Sbjct:   211 IQETARNPTVSFTSMTAASSGVGSGGIYGRLGGGSALSH 249

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 149/200 (74%), Positives = 171/200 (85%)

Query:     5 MPEDTIPNGF----VQNSVIAGSNNP-PN----TAAKKKRNLPGTPDPEAEVIALSPKTL 55
             MP+D  P  F    +    IA + NP PN     +AK+KRNLPG PDP+AEVIALSP +L
Sbjct:     3 MPDDHHPLSFPSYVLHQEHIAPNPNPNPNPTSSNSAKRKRNLPGNPDPDAEVIALSPNSL 62

Query:    56 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKE-VRKRVYVCPEKTCVHHHP 114
             M TNRF+CE+C KGF+RDQNLQLHRRGHNLPWKLKQRT+KE V+K+VY+CPEKTCVHH P
Sbjct:    63 MTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDP 122

Query:   115 SRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSR 174
             +RALGDLTGIKKHF RKHGEKKWKC+KCSK+YAV SDWKAHSK CGT+EY+CDCGT+FSR
Sbjct:   123 ARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFSR 182

Query:   175 RDSFITHRAFCDALAEETAR 194
             +DSFITHRAFCDALAEE+AR
Sbjct:   183 KDSFITHRAFCDALAEESAR 202

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
 Identities = 146/181 (80%), Positives = 165/181 (91%)

Query:    24 NNPPNTA-AKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG 82
             N  PN++ AKKKRN PGTPDP+A+VIALSP TLMATNRF+CEIC KGFQRDQNLQLHRRG
Sbjct:    44 NAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRG 103

Query:    83 HNLPWKLKQRTSKEV-RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK 141
             HNLPWKLKQR+ +EV +K+VY+CP KTCVHH  SRALGDLTGIKKH+ RKHGEKKWKCEK
Sbjct:   104 HNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEK 163

Query:   142 CSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFCDALAEETARVNAASSM 201
             CSK+YAVQSDWKAH+KTCGTREYKCDCGT+FSR+DSFITHRAFCDAL EE AR+++ S+ 
Sbjct:   164 CSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNN 223

Query:   202 N 202
             N
Sbjct:   224 N 224

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 151/239 (63%), Positives = 183/239 (76%)

Query:    11 PNGFVQN--SVIAGSNNPPNTAA---KKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEI 65
             PN F +   ++      P ++ A   KK+RN PG P+P+AEVIALSPKT+MATNRFLCE+
Sbjct:    27 PNNFNRQEAAMTMVQQQPTSSVAPPPKKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEV 86

Query:    66 CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIK 125
             C KGFQR+QNLQLHRRGHNLPWKLKQ+++KEVR++VY+CPE +CVHH P+RALGDLTGIK
Sbjct:    87 CNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIK 146

Query:   126 KHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRDSFITHRAFC 185
             KH+ RKHGEKKWKC+KCSKRYAVQSDWKAHSKTCGT+EY+CDCGT+FSRRDS+ITHRAFC
Sbjct:   147 KHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFC 206

Query:   186 DALAEETARVNAASSMNSLA---NGSISYHFMGTPLGPSVAQHF----SSIFKPIPGGG 237
             DAL +E+AR N   S  ++A    G   + F G         HF    +S F P+   G
Sbjct:   207 DALIQESAR-NPTVSFTAMAAGGGGGARHGFYGGASSALSHNHFGNNPNSGFTPLAAAG 264

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZWA6	MGP_ARATH	No assigned EC number	0.6011	0.8465	0.6106	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00640208 hypothetical protein (479 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.94
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.85
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.74
KOG3576	267	consensus Ovo and related transcription factors [T	99.73
KOG3608	467	consensus Zn finger proteins [General function pre	99.65
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.65
KOG3576	267	consensus Ovo and related transcription factors [T	99.56
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.54
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.48
KOG3608	467	consensus Zn finger proteins [General function pre	99.42
PLN03086	567	PRLI-interacting factor K; Provisional	99.3
PHA00733	128	hypothetical protein	98.98
PHA00733	128	hypothetical protein	98.96
PLN03086	567	PRLI-interacting factor K; Provisional	98.94
KOG3993	500	consensus Transcription factor (contains Zn finger	98.81
PHA02768	55	hypothetical protein; Provisional	98.58
PHA02768	55	hypothetical protein; Provisional	98.57
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.46
KOG3993	500	consensus Transcription factor (contains Zn finger	98.25
PHA00616	44	hypothetical protein	97.97
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.9
PHA00732	79	hypothetical protein	97.85
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.82
PHA00616	44	hypothetical protein	97.81
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.78
PHA00732	79	hypothetical protein	97.65
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.61
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.35
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.31
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.24
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.16
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.11
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.9
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.84
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.71
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.71
COG5048	467	FOG: Zn-finger [General function prediction only]	96.63
smart00355	26	ZnF_C2H2 zinc finger.	96.54
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.41
KOG1146	1406	consensus Homeobox protein [General function predi	96.11
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.03
PRK04860	160	hypothetical protein; Provisional	95.84
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.7
smart00355	26	ZnF_C2H2 zinc finger.	95.48
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	95.24
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	94.74
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.66
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	94.21
PRK04860	160	hypothetical protein; Provisional	94.17
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.82
COG5048	467	FOG: Zn-finger [General function prediction only]	93.82
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.79
KOG1146	1406	consensus Homeobox protein [General function predi	93.59
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.46
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.19
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.76
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	91.74
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	91.11
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	90.51
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	90.16
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	88.93
KOG2893	341	consensus Zn finger protein [General function pred	88.63
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.37
COG4049	65	Uncharacterized protein containing archaeal-type C	86.64
KOG2893	341	consensus Zn finger protein [General function pred	86.03
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	84.56
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	84.56
KOG2186	276	consensus Cell growth-regulating nucleolar protein	84.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	82.35
PHA00626	59	hypothetical protein	80.91
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.71

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.94  E-value=3.3e-28  Score=219.40  Aligned_cols=134  Identities=23%  Similarity=0.419  Sum_probs=126.3

Q ss_pred             CcCCCCCCCCCCCCCchhhhhcCccccCC---CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           29 TAAKKKRNLPGTPDPEAEVIALSPKTLMA---TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~k~~~~---~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      ....++|+.||+.+.+...|.+|+.+|-.   .+.+.|++|||.|.....|++|+|+|+               -+++|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~  191 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECG  191 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccc
Confidence            45588999999999999999999999854   688999999999999999999999996               468899


Q ss_pred             CCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHH
Q 048287          106 EKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRA  183 (365)
Q Consensus       106 ~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~  183 (365)
                      +|       ||.|...-.|..|+|+|+|||||.|..|+|.|..+++|+.|+++ .+.|+|.|. |+|.|++++.|.+|.+
T Consensus       192 iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 IC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            98       99999999999999999999999999999999999999999999 778999999 9999999999999987


Q ss_pred             H
Q 048287          184 F  184 (365)
Q Consensus       184 ~  184 (365)
                      .
T Consensus       265 S  265 (279)
T KOG2462|consen  265 S  265 (279)
T ss_pred             h
Confidence            6

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.85  E-value=4.6e-22  Score=179.75  Aligned_cols=124  Identities=21%  Similarity=0.459  Sum_probs=112.9

Q ss_pred             CCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCc
Q 048287           57 ATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKK  136 (365)
Q Consensus        57 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp  136 (365)
                      ...+|+|..|||.|.+.++|.+|+++|..          -..++.+.|++|       +|.|.....|+.|+|+|+  -+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~----------~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l~  187 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRS----------LDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--LP  187 (279)
T ss_pred             cCCceeccccccccccccccchhhccccc----------ccccccccCCCC-------CceeeehHHHhhHhhccC--CC
Confidence            45789999999999999999999999961          114678999999       999999999999999998  58


Q ss_pred             cccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHHhhhhhhhhhhhcccc
Q 048287          137 WKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAFCDALAEETARVNAAS  199 (365)
Q Consensus       137 ~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~~~~~~~~~~  199 (365)
                      ++|.+|||.|.+.+-|+.|+|+ +|||||.|. |+|.|..+++|+.|+++|.......+..|...
T Consensus       188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~Ks  252 (279)
T KOG2462|consen  188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKS  252 (279)
T ss_pred             cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhH
Confidence            9999999999999999999999 999999999 99999999999999999998887777766654

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.74  E-value=2.3e-19  Score=181.61  Aligned_cols=79  Identities=20%  Similarity=0.455  Sum_probs=72.4

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcccCCcc-----eecc----CCCc
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE-----YKCD----CGTV  171 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kp-----y~C~----Cgk~  171 (365)
                      +-+|-+|       .|.+..++.|+.|+|+|+|||||+|.+|++.|.++.+|+.|+-+|..+|     |.|.    |-+.
T Consensus       605 PNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~k  677 (958)
T KOG1074|consen  605 PNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKK  677 (958)
T ss_pred             ccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccc
Confidence            4578888       9999999999999999999999999999999999999999999876654     7885    8999


Q ss_pred             cCChhHHHHHHHHhh
Q 048287          172 FSRRDSFITHRAFCD  186 (365)
Q Consensus       172 F~~~~~L~~H~~~h~  186 (365)
                      |...-.|..|++.|.
T Consensus       678 ftn~V~lpQhIriH~  692 (958)
T KOG1074|consen  678 FTNAVTLPQHIRIHL  692 (958)
T ss_pred             ccccccccceEEeec
Confidence            999999999999986

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.73  E-value=3.5e-18  Score=147.50  Aligned_cols=114  Identities=24%  Similarity=0.554  Sum_probs=105.2

Q ss_pred             CCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      .....|.|.+|+|.|.-..-|.+|++.|.             .-|.|.|..|       |+.|.+--.|++|+|+|+|.+
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr  172 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR  172 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence            34577999999999999999999999998             7789999998       999999999999999999999


Q ss_pred             ccccccccccccchhhhhhhhcc-cC-----------Ccceecc-CCCccCChhHHHHHHHHhhhhh
Q 048287          136 KWKCEKCSKRYAVQSDWKAHSKT-CG-----------TREYKCD-CGTVFSRRDSFITHRAFCDALA  189 (365)
Q Consensus       136 p~~C~~C~k~F~~~~~L~~H~~~-~~-----------~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  189 (365)
                      ||+|..|+|.|.++-.|..|++. |+           .|.|.|+ ||.+-.+...+..|++.||...
T Consensus       173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            99999999999999999999987 75           4679999 9999999999999999998643

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.65  E-value=3.2e-17  Score=152.02  Aligned_cols=176  Identities=18%  Similarity=0.259  Sum_probs=143.2

Q ss_pred             CCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcC----CCccccccccc---------cc--C
Q 048287           34 KRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN----LPWKLKQRTSK---------EV--R   98 (365)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~----~~~~~~~~~~~---------~~--~   98 (365)
                      +-..|-+.+.++..|++|.++|+++|...|+.||.-|.++..|-.|++.-+    .++.|....++         |+  .
T Consensus       181 ~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH  260 (467)
T KOG3608|consen  181 NWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRH  260 (467)
T ss_pred             cchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHh
Confidence            445888999999999999999999999999999999999999999987654    33444322111         11  1


Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHh-hhcCCCccccccccccccchhhhhhhhcccCCcceecc---CCCccCC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD---CGTVFSR  174 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~---Cgk~F~~  174 (365)
                      -..|+|+.|       .......+.|..|++ +|..+|||+|+.|++.|.+.++|.+|..+|.+-.|.|+   |...|..
T Consensus       261 vn~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~  333 (467)
T KOG3608|consen  261 VNCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRT  333 (467)
T ss_pred             hhccccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHH
Confidence            145888888       888888899999987 57778999999999999999999999999888889996   9999999


Q ss_pred             hhHHHHHHHHhhhhhhhhhhhcccccccccCCCCcccccCCC
Q 048287          175 RDSFITHRAFCDALAEETARVNAASSMNSLANGSISYHFMGT  216 (365)
Q Consensus       175 ~~~L~~H~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (365)
                      ...|++|++.+|....+..+.|-.+...+....+++.|++-.
T Consensus       334 ~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kk  375 (467)
T KOG3608|consen  334 YTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKK  375 (467)
T ss_pred             HHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHh
Confidence            999999999999878888888888888887776666665543

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.65  E-value=3.6e-17  Score=165.81  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=52.4

Q ss_pred             cCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           30 AAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ..+..|=+|-++....+.|+.|.++|++++||+|++||+.|.++.+|+.||-+|.
T Consensus       603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             CCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence            3577899999999999999999999999999999999999999999999999996

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.56  E-value=6.5e-16  Score=133.56  Aligned_cols=111  Identities=24%  Similarity=0.394  Sum_probs=103.3

Q ss_pred             cCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCc
Q 048287           30 AAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTC  109 (365)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C  109 (365)
                      ...+.|.+|+|.|.-...|.+|+|-|...|+|.|..|||.|.....|++|+|+|+             +-+||+|..|  
T Consensus       115 ~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rtht-------------gvrpykc~~c--  179 (267)
T KOG3576|consen  115 QDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHT-------------GVRPYKCSLC--  179 (267)
T ss_pred             CCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcccc-------------Cccccchhhh--
Confidence            4678999999999999999999999999999999999999999999999999998             9999999999  


Q ss_pred             cCCCCCCccCChhHHHHHHhhhcC-----------CCccccccccccccchhhhhhhhcc-cC
Q 048287          110 VHHHPSRALGDLTGIKKHFCRKHG-----------EKKWKCEKCSKRYAVQSDWKAHSKT-CG  160 (365)
Q Consensus       110 ~~~~~~~~f~~~~~L~~H~~~H~~-----------ekp~~C~~C~k~F~~~~~L~~H~~~-~~  160 (365)
                           +++|..+..|..|.+.-+|           +|-|.|+.||.+-.+...+..|++. |.
T Consensus       180 -----~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  180 -----EKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             -----hHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence                 9999999999999875443           4679999999999999999999998 53

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.54  E-value=1.5e-15  Score=151.86  Aligned_cols=107  Identities=23%  Similarity=0.523  Sum_probs=96.3

Q ss_pred             ceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC------
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG------  133 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~------  133 (365)
                      ...|++|.+.|.+...|+.|++..+           ...+.-|.|..|       .+.|.++..|.+||.+|..      
T Consensus       210 lltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~  271 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAI  271 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCcccc
Confidence            3789999999999999999987654           125566899999       9999999999999999852      


Q ss_pred             -------CCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHH
Q 048287          134 -------EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAF  184 (365)
Q Consensus       134 -------ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~  184 (365)
                             -|+|+|..|+|.|..+.+|+.|+|+ .|+|||.|+ |+|.|+...++..||..
T Consensus       272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence                   4789999999999999999999999 899999999 99999999999999854

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.48  E-value=7.8e-15  Score=146.76  Aligned_cols=120  Identities=18%  Similarity=0.278  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCCCchhhhhcCccccCC--CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCc
Q 048287           32 KKKRNLPGTPDPEAEVIALSPKTLMA--TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTC  109 (365)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~k~~~~--~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C  109 (365)
                      .-.|+.|...+..-..|+.|.+....  +..|.|..|..+|..+..|.+||..|.-...-..........|.|+|.+|  
T Consensus       210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtEC--  287 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTEC--  287 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccccc--
Confidence            45899999998888889999886543  45799999999999999999999999621111122222335688999999  


Q ss_pred             cCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc
Q 048287          110 VHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       110 ~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                           +|+|+.+.+|+.|+|+|.|||||.|+.|+|+|.....+..|+..
T Consensus       288 -----gKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  288 -----GKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             -----chhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence                 99999999999999999999999999999999999999999865

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.42  E-value=3.9e-14  Score=131.70  Aligned_cols=159  Identities=17%  Similarity=0.233  Sum_probs=135.8

Q ss_pred             CCCCCCCCcCCCCCCCCCCCCCchhhhhcCccccC--CCCceecccccccccChHhHHHHHHhcCCCcccc---------
Q 048287           22 GSNNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLM--ATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLK---------   90 (365)
Q Consensus        22 ~~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~k~~~--~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~---------   90 (365)
                      ++-...+.++--.|+.||.-|.....|..|.+..+  ..++|.|..|.|.|.+...|+.|++.|..-++|.         
T Consensus       197 eH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~  276 (467)
T KOG3608|consen  197 EHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSA  276 (467)
T ss_pred             HHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCCh
Confidence            34455667777899999999999999999877544  5679999999999999999999999997555442         


Q ss_pred             ----c-ccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc--ccccccchhhhhhhhcc-c-C-
Q 048287           91 ----Q-RTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-C-G-  160 (365)
Q Consensus        91 ----~-~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~-~-  160 (365)
                          . -.-+|..+|||+|+.|       .+.|...+.|.+|..+|. +--|.|+.  |..+|.....+++|++. + + 
T Consensus       277 ssL~~H~r~rHs~dkpfKCd~C-------d~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~  348 (467)
T KOG3608|consen  277 SSLTTHIRYRHSKDKPFKCDEC-------DTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGN  348 (467)
T ss_pred             HHHHHHHHhhhccCCCccccch-------hhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCC
Confidence                1 1245778999999999       999999999999999998 67899988  99999999999999998 5 2 


Q ss_pred             -Ccceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          161 -TREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       161 -~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                       .-+|.|. |++.|.+-.+|..|+.+-|+.
T Consensus       349 np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f  378 (467)
T KOG3608|consen  349 NPILYACHCCDRFFTSGKSLSAHLMKKHGF  378 (467)
T ss_pred             CCCceeeecchhhhccchhHHHHHHHhhcc
Confidence             3579999 999999999999999887764

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.30  E-value=3.3e-12  Score=128.76  Aligned_cols=105  Identities=22%  Similarity=0.448  Sum_probs=89.7

Q ss_pred             CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcc
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKW  137 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~  137 (365)
                      ++.+.|++|++.|. ...|..|++.|+               +++.|+ |       ++.+ .+..|..|+.+|.++|++
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi  505 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLI  505 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCce
Confidence            35578999999996 688999999874               679998 7       8755 678999999999999999


Q ss_pred             cccccccccc----------chhhhhhhhcccCCcceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          138 KCEKCSKRYA----------VQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       138 ~C~~C~k~F~----------~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      .|..|++.|.          ....|..|...++.+++.|. |++.|..+ .|..|+..+|+.
T Consensus       506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence            9999999995          24589999999999999999 99999765 678999887753

>PHA00733 hypothetical protein

Probab=98.98  E-value=4.1e-10  Score=93.64  Aligned_cols=54  Identities=20%  Similarity=0.417  Sum_probs=28.6

Q ss_pred             CCccccccccccccchhhhhhhhcccCCcceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          134 EKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       134 ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      ++||.|+.|++.|.....|..|++.+ +.+|.|. |++.|.....|..|+...|++
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCccCCHHHHHHHHHHhcCc
Confidence            44555555555555555555555443 2345555 555555555555555555543

>PHA00733 hypothetical protein

Probab=98.96  E-value=3.9e-10  Score=93.76  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=49.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cC
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG  160 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~  160 (365)
                      ..++|.|+.|       ++.|.....|..|++.|  +.+|.|..|++.|.....|..|+.. |+
T Consensus        70 ~~kPy~C~~C-------gk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         70 AVSPYVCPLC-------LMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCCccCCCC-------CCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            5789999999       99999999999999987  4679999999999999999999987 64

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.94  E-value=9.9e-10  Score=111.04  Aligned_cols=104  Identities=14%  Similarity=0.275  Sum_probs=87.0

Q ss_pred             cCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCc
Q 048287           30 AAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTC  109 (365)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C  109 (365)
                      +.-+.|+.|++.|. ...+..|.++++  ++|.|+ ||+.| .+..|..|++.|.             .++++.|++|  
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thC-------------p~Kpi~C~fC--  510 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTC-------------PLRLITCRFC--  510 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccC-------------CCCceeCCCC--
Confidence            34568999999996 577899999985  889999 99866 6689999999998             8999999999  


Q ss_pred             cCCCCCCccC----------ChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cC
Q 048287          110 VHHHPSRALG----------DLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG  160 (365)
Q Consensus       110 ~~~~~~~~f~----------~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~  160 (365)
                           ++.|.          ....|..|.... |.+++.|..|++.|..+ +|..|+.. |.
T Consensus       511 -----~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        511 -----GDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             -----CCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence                 88884          246899999885 89999999999887655 67888776 53

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.81  E-value=1.1e-09  Score=104.63  Aligned_cols=154  Identities=18%  Similarity=0.251  Sum_probs=115.0

Q ss_pred             CCCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcc-c--------c-------
Q 048287           27 PNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWK-L--------K-------   90 (365)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~-~--------~-------   90 (365)
                      +.....|.|.+|...|.+.-.|..|.-.-.-.--|+|++|+|.|....+|--|+|-|. |.. .        +       
T Consensus       262 ~n~iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHK-PR~eaa~a~~~P~k~~~~~ra  340 (500)
T KOG3993|consen  262 PNVIGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHK-PRPEAAKAGSPPPKQAVETRA  340 (500)
T ss_pred             cccHHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccC-CchhhhhcCCCChhhhhhhhh
Confidence            4445678999999999999999999887777778999999999999999999999996 111 0        0       


Q ss_pred             -----cccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC---C---------------------------
Q 048287           91 -----QRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE---K---------------------------  135 (365)
Q Consensus        91 -----~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e---k---------------------------  135 (365)
                           .+......+..|.|.+|       ++.|.....|++|+.+|+..   +                           
T Consensus       341 e~~ea~rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a  413 (500)
T KOG3993|consen  341 EVQEAERSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSA  413 (500)
T ss_pred             hhhhccccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccc
Confidence                 01112234458999999       99999999999999887521   0                           


Q ss_pred             ----------------ccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          136 ----------------KWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       136 ----------------p~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                                      -..|+.|+-.+..+..--.|.+. +-+.-|.|. |.-.|.....|.+|+..+|-.
T Consensus       414 ~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  414 SDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             ccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence                            01234444444444444444444 445569999 999999999999999999864

>PHA02768 hypothetical protein; Provisional

Probab=98.58  E-value=2.9e-08  Score=69.03  Aligned_cols=43  Identities=14%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhh
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWK  153 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~  153 (365)
                      |.|++|       |+.|.....|..|+++|+  ++|+|..|++.|.+.+.|.
T Consensus         6 y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            678888       888888888888888887  6888888888888777664

>PHA02768 hypothetical protein; Provisional

Probab=98.57  E-value=2.5e-08  Score=69.31  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             ceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHH
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIK  125 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~  125 (365)
                      -|+|++|||.|.+..+|..|+++|.               ++|+|..|       ++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeE
Confidence            5899999999999999999999994               58999998       99998776654

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.46  E-value=9.3e-08  Score=56.72  Aligned_cols=26  Identities=31%  Similarity=0.795  Sum_probs=23.7

Q ss_pred             HHHHHHhhhcCCCccccccccccccc
Q 048287          123 GIKKHFCRKHGEKKWKCEKCSKRYAV  148 (365)
Q Consensus       123 ~L~~H~~~H~~ekp~~C~~C~k~F~~  148 (365)
                      +|.+|+++|+++|||+|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999963

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.25  E-value=1.8e-07  Score=89.68  Aligned_cols=85  Identities=18%  Similarity=0.445  Sum_probs=70.5

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcccCC-------------------
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGT-------------------  161 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~-------------------  161 (365)
                      .|.|..|       ...|.+.-.|..|.......--|+|..|+|.|.-..+|..|.|+|.-                   
T Consensus       267 dyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r  339 (500)
T KOG3993|consen  267 DYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR  339 (500)
T ss_pred             HHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence            3899998       89999999999998644444459999999999999999999987531                   


Q ss_pred             ---------------cceecc-CCCccCChhHHHHHHHHhhhhhhhh
Q 048287          162 ---------------REYKCD-CGTVFSRRDSFITHRAFCDALAEET  192 (365)
Q Consensus       162 ---------------kpy~C~-Cgk~F~~~~~L~~H~~~h~~~~~~~  192 (365)
                                     .-|.|. |+|.|.+...|++|+..|+......
T Consensus       340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k  386 (500)
T KOG3993|consen  340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAK  386 (500)
T ss_pred             hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccch
Confidence                           129999 9999999999999999998754443

>PHA00616 hypothetical protein

Probab=97.97  E-value=2.7e-06  Score=56.41  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             ceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      +|+|..||+.|..++.|.+|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            6899999999999999999999998             788888764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.90  E-value=8.2e-06  Score=75.74  Aligned_cols=71  Identities=28%  Similarity=0.578  Sum_probs=42.2

Q ss_pred             CCceeccc--ccccccChHhHHHHHH-hcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           58 TNRFLCEI--CGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        58 ~k~~~C~~--Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +|+|+|++  |.|.|+....|+.|+. .|..+..         .+.|  -++.       -..|            -...
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~---------~~~p--~p~~-------~~~F------------~~~~  396 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKL---------HENP--SPEK-------MNIF------------SAKD  396 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCccc---------CCCC--Cccc-------cccc------------cccC
Confidence            48888876  8888888888888863 3421100         0011  0111       1222            1235


Q ss_pred             Cccccccccccccchhhhhhhhcc
Q 048287          135 KKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       135 kp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      |||+|++|+|+|.....|+-|++.
T Consensus       397 KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         397 KPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             CceeccccchhhccCccceecccc
Confidence            778888888888777777777654

>PHA00732 hypothetical protein

Probab=97.85  E-value=1e-05  Score=61.41  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=16.0

Q ss_pred             ceecccccccccChHhHHHHHHh
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRG   82 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~   82 (365)
                      +|.|.+|++.|.+...|+.|++.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~   23 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARR   23 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhc
Confidence            46677777777777777777764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.82  E-value=1.2e-05  Score=47.65  Aligned_cols=26  Identities=31%  Similarity=0.655  Sum_probs=23.4

Q ss_pred             hHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCC
Q 048287           75 NLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD  120 (365)
Q Consensus        75 ~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~  120 (365)
                      +|.+|++.|+             ++++|.|++|       ++.|..
T Consensus         1 ~l~~H~~~H~-------------~~k~~~C~~C-------~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHT-------------GEKPYKCPYC-------GKSFSN   26 (26)
T ss_dssp             HHHHHHHHHS-------------SSSSEEESSS-------SEEESS
T ss_pred             CHHHHhhhcC-------------CCCCCCCCCC-------cCeeCc
Confidence            5899999998             9999999999       998863

...

>PHA00616 hypothetical protein

Probab=97.81  E-value=8.5e-06  Score=54.04  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccc
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRY  146 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F  146 (365)
                      ||+|+.|       |+.|..+..|.+|++.|++++++.|+.--..|
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f   39 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF   39 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence            5788888       89999999999999999999988887543333

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.78  E-value=1.5e-05  Score=45.59  Aligned_cols=23  Identities=48%  Similarity=0.992  Sum_probs=21.7

Q ss_pred             eecccccccccChHhHHHHHHhc
Q 048287           61 FLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        61 ~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      |+|++|++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            78999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00732 hypothetical protein

Probab=97.65  E-value=3.4e-05  Score=58.48  Aligned_cols=45  Identities=27%  Similarity=0.444  Sum_probs=36.8

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhh-hcCCCccccccccccccchhhhhhhhcc
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCR-KHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~-H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      ||.|+.|       ++.|.....|+.|++. |.   ++.|+.|++.|.   .|..|.++
T Consensus         1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPIC-------GFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCC-------CCccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence            4788888       9999999999999985 54   358999999997   57888866

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.61  E-value=7.6e-05  Score=52.38  Aligned_cols=52  Identities=27%  Similarity=0.535  Sum_probs=33.8

Q ss_pred             ceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      .|.|++|++. .+...|..|....+.           ...+.+.|++|       ...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~H~-----------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDEHR-----------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhHCc-----------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            4788888884 456778888644431           13356888888       55443  37777877654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.35  E-value=6.8e-05  Score=69.80  Aligned_cols=72  Identities=19%  Similarity=0.476  Sum_probs=45.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc-CCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCC
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSR  174 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~-~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~  174 (365)
                      ++|||+|++-+|     .|.|+....|+-|+.--+ ..+...-+          .-..|.-. ...|||+|+ |+|.|..
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKN  410 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKN  410 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhcc
Confidence            447788877777     777777777777765321 11111100          11111111 457999999 9999999


Q ss_pred             hhHHHHHHHH
Q 048287          175 RDSFITHRAF  184 (365)
Q Consensus       175 ~~~L~~H~~~  184 (365)
                      ...|+-|++-
T Consensus       411 lNGLKYHr~H  420 (423)
T COG5189         411 LNGLKYHRKH  420 (423)
T ss_pred             Cccceecccc
Confidence            9999888753

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.31  E-value=0.00016  Score=41.21  Aligned_cols=24  Identities=46%  Similarity=0.985  Sum_probs=20.2

Q ss_pred             eecccccccccChHhHHHHHHhcC
Q 048287           61 FLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        61 ~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |.|++|++.|.+...|+.|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999998773

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.24  E-value=0.00021  Score=40.71  Aligned_cols=22  Identities=36%  Similarity=0.773  Sum_probs=15.5

Q ss_pred             eecc-CCCccCChhHHHHHHHHh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      |.|+ |++.|.++..|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            5677 777777777777777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.16  E-value=0.00026  Score=42.02  Aligned_cols=25  Identities=40%  Similarity=0.781  Sum_probs=23.5

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|+|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999999885

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.11  E-value=0.0004  Score=48.71  Aligned_cols=47  Identities=23%  Similarity=0.422  Sum_probs=25.2

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhc-CC-Cccccccccccccchhhhhhhhcc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH-GE-KKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~-~e-kp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      |.|++|       ++ ..+...|..|....+ .+ +.+.|++|...+.  .+|..|+..
T Consensus         3 f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    3 FTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             cCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            566666       66 344556666654433 22 3466666665433  255555554

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.90  E-value=0.00074  Score=38.37  Aligned_cols=23  Identities=22%  Similarity=0.650  Sum_probs=15.1

Q ss_pred             eecc-CCCccCChhHHHHHHHHhh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      |.|+ |++.|.+...|..|++.+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            5677 7777777777777777654

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.84  E-value=0.00055  Score=40.56  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=15.5

Q ss_pred             ceecc-CCCccCChhHHHHHHHHhh
Q 048287          163 EYKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       163 py~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      +|.|+ |++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            46666 6666666666666666554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.71  E-value=0.00068  Score=53.09  Aligned_cols=19  Identities=26%  Similarity=0.665  Sum_probs=0.0

Q ss_pred             cccccccccChHhHHHHHH
Q 048287           63 CEICGKGFQRDQNLQLHRR   81 (365)
Q Consensus        63 C~~Cgk~F~~~~~L~~H~~   81 (365)
                      |..|+..|.....|..|+.
T Consensus         2 C~~C~~~f~~~~~l~~H~~   20 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMK   20 (100)
T ss_dssp             -------------------
T ss_pred             ccccccccccccccccccc
Confidence            5666666666666666653

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.71  E-value=0.0011  Score=51.89  Aligned_cols=68  Identities=15%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcccCCcceecc-CCCccCChhHHHHHHHHhh
Q 048287          115 SRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       115 ~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      +..|.....|..|+...++-..   . ....+.....+..+.+..-...+.|. |++.|.....|..|++.+.
T Consensus         6 ~~~f~~~~~l~~H~~~~H~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen    6 DESFSSVDDLLQHMKKKHGFDI---P-DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH   74 (100)
T ss_dssp             -----------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccccc---c-cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence            9999999999999976665321   1 11222344445555544323479999 9999999999999999753

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.63  E-value=0.0021  Score=63.14  Aligned_cols=54  Identities=20%  Similarity=0.293  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCCchhhhhcCcc--ccCCC--Cceecc--cccccccChHhHHHHHHhcC
Q 048287           31 AKKKRNLPGTPDPEAEVIALSPK--TLMAT--NRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~k--~~~~~--k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ..+.|..|...|.....+..|.+  .|..+  +++.|+  .|++.|.+...|..|...|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc
Confidence            46899999999999999999999  89999  999999  79999999999999999997

>smart00355 ZnF_C2H2 zinc finger

Probab=96.54  E-value=0.0015  Score=37.61  Aligned_cols=24  Identities=38%  Similarity=0.753  Sum_probs=22.1

Q ss_pred             eecccccccccChHhHHHHHHhcC
Q 048287           61 FLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        61 ~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999774

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.0042  Score=64.37  Aligned_cols=15  Identities=33%  Similarity=0.481  Sum_probs=9.2

Q ss_pred             cccChHhHHHHH-Hhc
Q 048287           69 GFQRDQNLQLHR-RGH   83 (365)
Q Consensus        69 ~F~~~~~L~~H~-~~H   83 (365)
                      .|.....|+.|+ ..|
T Consensus       123 ~~~s~~~Lk~H~~~~H  138 (669)
T KOG2231|consen  123 EFKSVENLKNHMRDQH  138 (669)
T ss_pred             chhHHHHHHHHHHHhh
Confidence            334667788887 344

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.11  E-value=0.0053  Score=67.24  Aligned_cols=145  Identities=12%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             CCCCCCCCCCchhhhhcCccc-cCCCCceecccccccccChHhHHHHHHhcC-CCcc--ccc---------ccccccCCc
Q 048287           34 KRNLPGTPDPEAEVIALSPKT-LMATNRFLCEICGKGFQRDQNLQLHRRGHN-LPWK--LKQ---------RTSKEVRKR  100 (365)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~k~-~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~-~~~~--~~~---------~~~~~~~~k  100 (365)
                      .|..|+..+.....+..+... +...+.|+|+.|+..|+....|..|||.-+ ....  +..         ........+
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            344555555555555555443 344588999999999999999999998732 1110  100         011223457


Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhh--hc-----------------------------------C------CCcc
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCR--KH-----------------------------------G------EKKW  137 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~--H~-----------------------------------~------ekp~  137 (365)
                      +|.|..|       ...+..+..|-.|+..  |.                                   +      +-+|
T Consensus       518 p~~C~~C-------~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~  590 (1406)
T KOG1146|consen  518 PYPCRAC-------NYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSW  590 (1406)
T ss_pred             cccceee-------eeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCc
Confidence            7888888       9999999999999864  10                                   0      1258


Q ss_pred             ccccccccccchhhhhhhhcc--cCCcceecc-CCCccCChhHHHHHHHHh
Q 048287          138 KCEKCSKRYAVQSDWKAHSKT--CGTREYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       138 ~C~~C~k~F~~~~~L~~H~~~--~~~kpy~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      .|.+|++.-.-...|+.|+..  |...|..|. |...+.....|..+.+.+
T Consensus       591 ~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  591 RCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             chhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            999999999999999999988  444448888 888887777666665554

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.03  E-value=0.004  Score=36.04  Aligned_cols=23  Identities=39%  Similarity=0.947  Sum_probs=21.3

Q ss_pred             eecccccccccChHhHHHHHHhc
Q 048287           61 FLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        61 ~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      |.|.+|++.|.....|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999999765

>PRK04860 hypothetical protein; Provisional

Probab=95.84  E-value=0.0056  Score=52.85  Aligned_cols=40  Identities=18%  Similarity=0.472  Sum_probs=27.2

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchh
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQS  150 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~  150 (365)
                      -+|.|. |       ++   ....+.+|.++|.++++|+|..|+..|....
T Consensus       118 ~~Y~C~-C-------~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-C-------QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-C-------CC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            457776 6       54   4566677777777777777777777765443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.70  E-value=0.011  Score=40.24  Aligned_cols=29  Identities=24%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             CCCCceecccccccccChHhHHHHHHhcC
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ..+.|-.|++|+..+.+..+|++|+..++
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            34689999999999999999999997665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.48  E-value=0.011  Score=33.82  Aligned_cols=22  Identities=32%  Similarity=0.819  Sum_probs=17.8

Q ss_pred             eecc-CCCccCChhHHHHHHHHh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      |.|. |++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            5788 888888888888888755

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.02  Score=59.44  Aligned_cols=125  Identities=19%  Similarity=0.205  Sum_probs=77.1

Q ss_pred             CCCCCCCCCCCCchhhhhcCcc-ccCCCCceeccc----------ccccccChHhHHHHHHhcCCCcccccccccccCCc
Q 048287           32 KKKRNLPGTPDPEAEVIALSPK-TLMATNRFLCEI----------CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKR  100 (365)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~k-~~~~~k~~~C~~----------Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k  100 (365)
                      ++.|..| ..|.....|+.|+. .|.   .+.|.+          |.|.|. ...|..|++.-- +  .     ....+.
T Consensus       115 ~~~~~~c-~~~~s~~~Lk~H~~~~H~---~~~c~lC~~~~kif~~e~k~Yt-~~el~~h~~~gd-~--d-----~~s~rG  181 (669)
T KOG2231|consen  115 KKECLHC-TEFKSVENLKNHMRDQHK---LHLCSLCLQNLKIFINERKLYT-RAELNLHLMFGD-P--D-----DESCRG  181 (669)
T ss_pred             cCCCccc-cchhHHHHHHHHHHHhhh---hhccccccccceeeeeeeeheh-HHHHHHHHhcCC-C--c-----cccccC
Confidence            4455555 55557788888883 342   233433          445554 456777775432 1  0     000111


Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc------cccccchhhhhhhhcc-cCCcceecc---CC-
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC------SKRYAVQSDWKAHSKT-CGTREYKCD---CG-  169 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C------~k~F~~~~~L~~H~~~-~~~kpy~C~---Cg-  169 (365)
                      .-.|..|       ...|.....|.+|++.++    |.|..|      +..|....+|..|-+. |    |.|.   |. 
T Consensus       182 hp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~  246 (669)
T KOG2231|consen  182 HPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRT  246 (669)
T ss_pred             Cccchhh-------hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----cccccccccc
Confidence            2457777       999999999999998765    566666      4568888899999887 5    7775   53 


Q ss_pred             CccCChhHHHHHHHH
Q 048287          170 TVFSRRDSFITHRAF  184 (365)
Q Consensus       170 k~F~~~~~L~~H~~~  184 (365)
                      +.|.....+..|++.
T Consensus       247 ~~f~~~~~~ei~lk~  261 (669)
T KOG2231|consen  247 KKFYVAFELEIELKA  261 (669)
T ss_pred             ceeeehhHHHHHHHh
Confidence            445555455555553

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=94.74  E-value=0.008  Score=35.62  Aligned_cols=24  Identities=29%  Similarity=0.773  Sum_probs=20.2

Q ss_pred             ceecccccccccChHhHHHHHHhc
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      .|.|..|++.|.+...|+.|++..
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            378999999999999999998653

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.66  E-value=0.045  Score=37.39  Aligned_cols=32  Identities=16%  Similarity=0.323  Sum_probs=18.2

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKK  136 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp  136 (365)
                      .+.|-.|++|       +..+....+|++|+.++++.||
T Consensus        21 S~~PatCP~C-------~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPIC-------GAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT---------EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcc-------hhhccchhhHHHHHHHHhcccC
Confidence            4566777777       7777777777777776666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=94.21  E-value=0.041  Score=31.43  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=14.4

Q ss_pred             eecc-CCCccCChhHHHHHHHHhh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      |+|. |+.... ...|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            6777 777776 777777777765

>PRK04860 hypothetical protein; Provisional

Probab=94.17  E-value=0.035  Score=47.92  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             CceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCCh
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDL  121 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~  121 (365)
                      -+|.|. |++   ....+.+|.++|.             ++++|.|..|       +..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~-------------g~~~YrC~~C-------~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVR-------------GEAVYRCRRC-------GETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhc-------------CCccEECCCC-------CceeEEe
Confidence            479998 998   6678999999998             8999999999       7777543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.82  E-value=0.034  Score=32.86  Aligned_cols=22  Identities=27%  Similarity=0.742  Sum_probs=16.8

Q ss_pred             cccccccccccchhhhhhhhcc
Q 048287          137 WKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       137 ~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6677788888888888777765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.82  E-value=0.036  Score=54.30  Aligned_cols=107  Identities=17%  Similarity=0.249  Sum_probs=69.9

Q ss_pred             CceecccccccccChHhHHHHHH--hcCCCcccccccccccCC--ceeeCC--CCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRR--GHNLPWKLKQRTSKEVRK--RVYVCP--EKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~--~H~~~~~~~~~~~~~~~~--k~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      .++.|..|.+.|.+...|..|.+  .|.             .+  +++.|+  .|       ++.|.....+..|..+|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            46888888888888888888888  676             66  888888  56       888888888888888888


Q ss_pred             CCCcccccc--ccccccchhhhhhhh-----cc-cCCcceecc---CCCccCChhHHHHHHHHh
Q 048287          133 GEKKWKCEK--CSKRYAVQSDWKAHS-----KT-CGTREYKCD---CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       133 ~ekp~~C~~--C~k~F~~~~~L~~H~-----~~-~~~kpy~C~---Cgk~F~~~~~L~~H~~~h  185 (365)
                      +.++++|..  |.+.+.....-..+.     .. ...+.+.|.   |...+.+...+..|...+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH  411 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccc
Confidence            877776633  444444443311111     11 334445553   555555555555554444

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.79  E-value=0.036  Score=31.89  Aligned_cols=21  Identities=33%  Similarity=0.698  Sum_probs=13.1

Q ss_pred             eecc-CCCccCChhHHHHHHHH
Q 048287          164 YKCD-CGTVFSRRDSFITHRAF  184 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~  184 (365)
                      |.|+ |++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566 66666666666666543

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.59  E-value=0.028  Score=61.82  Aligned_cols=78  Identities=15%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhh-cccCCcceecc-CCCccCCh
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHS-KTCGTREYKCD-CGTVFSRR  175 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~-~~~~~kpy~C~-Cgk~F~~~  175 (365)
                      ..+.|+|+.|       +..|.....|..|||..+-+-.-  .+|. .+.....+.+=. ...+.++|.|. |...|..+
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~--~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttn  531 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS--AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTN  531 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccccccch--hHhH-hccccccccccccccCCCCcccceeeeeeeecc
Confidence            5688999999       99999999999999975433211  3332 222222222211 11677999999 99999999


Q ss_pred             hHHHHHHHHh
Q 048287          176 DSFITHRAFC  185 (365)
Q Consensus       176 ~~L~~H~~~h  185 (365)
                      ..|..|++..
T Consensus       532 g~LsihlqS~  541 (1406)
T KOG1146|consen  532 GNLSIHLQSD  541 (1406)
T ss_pred             hHHHHHHHHH
Confidence            9999999874

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.46  E-value=0.042  Score=52.18  Aligned_cols=74  Identities=20%  Similarity=0.371  Sum_probs=48.3

Q ss_pred             eCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccccc----ccccchhhhhhhhcc-cCCcceecc---CC----C
Q 048287          103 VCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS----KRYAVQSDWKAHSKT-CGTREYKCD---CG----T  170 (365)
Q Consensus       103 ~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~----k~F~~~~~L~~H~~~-~~~kpy~C~---Cg----k  170 (365)
                      .|..|       ...|-+-..|..|+|..+ |+-|.|+.-+    .-|..-..|..|-+. |    |.|.   |.    .
T Consensus       222 ~C~FC-------~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~  289 (493)
T COG5236         222 LCIFC-------KIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCY  289 (493)
T ss_pred             hhhhc-------cceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEE
Confidence            46666       888888888888887554 2333333222    346777777777766 4    6663   42    4


Q ss_pred             ccCChhHHHHHHHHhhhh
Q 048287          171 VFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       171 ~F~~~~~L~~H~~~h~~~  188 (365)
                      .|.....|..|+..-|+.
T Consensus       290 vf~~~~el~~h~~~~h~~  307 (493)
T COG5236         290 VFPYHTELLEHLTRFHKV  307 (493)
T ss_pred             EeccHHHHHHHHHHHhhc
Confidence            588888888898776653

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.19  E-value=0.089  Score=29.98  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=13.7

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      |.|+.|       ..... ...|.+|+++|+
T Consensus         1 y~C~~C-------~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHC-------SYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSS-------S-EES-HHHHHHHHHHHH
T ss_pred             CCCCCC-------CCcCC-HHHHHHHHHhhC
Confidence            566666       66666 667777776654

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.76  E-value=0.12  Score=29.99  Aligned_cols=21  Identities=33%  Similarity=0.770  Sum_probs=17.2

Q ss_pred             eecccccccccChHhHHHHHHh
Q 048287           61 FLCEICGKGFQRDQNLQLHRRG   82 (365)
Q Consensus        61 ~~C~~Cgk~F~~~~~L~~H~~~   82 (365)
                      .+|+.||+.| ....|.+|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5799999999 56779999764

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=91.74  E-value=0.16  Score=48.32  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=65.4

Q ss_pred             CceecccccccccChHhHHHHHHh--cC--CCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHh--hh-
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRG--HN--LPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC--RK-  131 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~--H~--~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~--~H-  131 (365)
                      .++.|-.|.|.|+.+..|+.|||.  |.  .|+       .+.=++.|.-.+-        ..-+.+.....|..  +- 
T Consensus       194 ~r~~CLyCekifrdkntLkeHMrkK~HrrinPk-------nreYDkfyiINY~--------ev~ks~t~~~~e~dret~~  258 (423)
T KOG2482|consen  194 ERLRCLYCEKIFRDKNTLKEHMRKKRHRRINPK-------NREYDKFYIINYL--------EVGKSWTIVHSEDDRETNE  258 (423)
T ss_pred             hhheeeeeccccCCcHHHHHHHHhccCcccCCC-------ccccceEEEEeHh--------hcCCccchhhhhhhhhhhc
Confidence            468999999999999999999964  42  110       0011122332221        11111111122221  10 


Q ss_pred             --------------cCCCc--cccccccccccchhhhhhhhcc-cC---------------------------Ccceecc
Q 048287          132 --------------HGEKK--WKCEKCSKRYAVQSDWKAHSKT-CG---------------------------TREYKCD  167 (365)
Q Consensus       132 --------------~~ekp--~~C~~C~k~F~~~~~L~~H~~~-~~---------------------------~kpy~C~  167 (365)
                                    .+..+  .+|-.|...+.....|..|+++ |.                           .+.-.|-
T Consensus       259 d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~  338 (423)
T KOG2482|consen  259 DINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCA  338 (423)
T ss_pred             cccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccc
Confidence                          01122  4788888888888888888876 52                           0113355


Q ss_pred             -CCCccCChhHHHHHHHHhh
Q 048287          168 -CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       168 -Cgk~F~~~~~L~~H~~~h~  186 (365)
                       |...|.....|..|+.-+.
T Consensus       339 ~cd~~F~~e~~l~~hm~e~k  358 (423)
T KOG2482|consen  339 ECDLSFWKEPGLLIHMVEDK  358 (423)
T ss_pred             cccccccCcchhhhhccccc
Confidence             8888999999999986653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=91.11  E-value=0.16  Score=31.60  Aligned_cols=25  Identities=24%  Similarity=0.739  Sum_probs=21.5

Q ss_pred             CceecccccccccChHhHHHHHHhc
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      .+|.|++|++.|.....+..|++..
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChH
Confidence            3688999999999999999998543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=90.51  E-value=0.21  Score=29.03  Aligned_cols=21  Identities=33%  Similarity=0.858  Sum_probs=13.9

Q ss_pred             eecc-CCCccCChhHHHHHHHHh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      ..|. ||+.| ..+.|.+|++.|
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~C   24 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKIC   24 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHhc
Confidence            3566 77777 566777776654

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.16  E-value=0.11  Score=45.88  Aligned_cols=83  Identities=20%  Similarity=0.435  Sum_probs=66.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-c----------CCcceec
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-C----------GTREYKC  166 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~----------~~kpy~C  166 (365)
                      ..+.|.|++-+|     -+.|.....+..|..+-++   -.|..|.+.|.+...|..|+.. |          |.--|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            446689999988     8899888888888865444   3799999999999999999865 4          3456999


Q ss_pred             c---CCCccCChhHHHHHHHHhhhh
Q 048287          167 D---CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       167 ~---Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      -   |+..|.+...-..|+-.-|..
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHKY  172 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhccC
Confidence            4   999999998888887665543

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=88.93  E-value=0.68  Score=44.87  Aligned_cols=48  Identities=21%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             cccccccccccchhhhhhhhcc-cCC-----------------------cceecc-CC---CccCChhHHHHHHHH
Q 048287          137 WKCEKCSKRYAVQSDWKAHSKT-CGT-----------------------REYKCD-CG---TVFSRRDSFITHRAF  184 (365)
Q Consensus       137 ~~C~~C~k~F~~~~~L~~H~~~-~~~-----------------------kpy~C~-Cg---k~F~~~~~L~~H~~~  184 (365)
                      -.|-.|++.|.....-..||.. |+-                       .-|.|- |.   +.|.+....+.||..
T Consensus       167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            4578888888888888888877 641                       337787 87   888888888888865

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=88.63  E-value=0.12  Score=46.79  Aligned_cols=47  Identities=19%  Similarity=0.307  Sum_probs=39.6

Q ss_pred             CCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHH-HHhcC
Q 048287           34 KRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLH-RRGHN   84 (365)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H-~~~H~   84 (365)
                      =|=.|...|.+...|+.|+|.    |-|+|.+|-|..-+--.|..| |++|.
T Consensus        12 wcwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence            477899999999999999874    889999999888777888888 56664

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.37  E-value=0.47  Score=29.43  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             ceecc-CCCccCChhHHHHHHHHh
Q 048287          163 EYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       163 py~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      +|.|+ |++.|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            58899 999999888888888653

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=86.64  E-value=0.34  Score=33.70  Aligned_cols=29  Identities=34%  Similarity=0.714  Sum_probs=20.6

Q ss_pred             cCCcceecc-CCCccCChhHHHHHHHHhhh
Q 048287          159 CGTREYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       159 ~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      -|+.-++|+ |++.|.....+.+|+..-|+
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            456667777 77777777777777766553

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=86.03  E-value=0.28  Score=44.44  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=34.2

Q ss_pred             CCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhc
Q 048287          104 CPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSK  157 (365)
Q Consensus       104 C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~  157 (365)
                      |.+|       ++.|.+..-|..|++.    |.|+|.+|.|...+--.|..|.-
T Consensus        13 cwyc-------nrefddekiliqhqka----khfkchichkkl~sgpglsihcm   55 (341)
T KOG2893|consen   13 CWYC-------NREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCM   55 (341)
T ss_pred             eeec-------ccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehh
Confidence            7787       9999998888888764    56999999988777777777743

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=84.56  E-value=0.47  Score=40.68  Aligned_cols=44  Identities=20%  Similarity=0.353  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCch-hhhhcCccccCCCCceecccccccccChHhHH
Q 048287           33 KKRNLPGTPDPEA-EVIALSPKTLMATNRFLCEICGKGFQRDQNLQ   77 (365)
Q Consensus        33 ~~c~~c~~~~~~~-~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~   77 (365)
                      ++|+.||.++... ..-......+ -.+.+.|+-||++|.+...+.
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~-~~~~~~c~~c~~~f~~~e~~~   45 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNA-IRRRRECLACGKRFTTFERVE   45 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCc-eeeeeeccccCCcceEeEecc
Confidence            4899999887332 2222222112 224599999999999876544

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=84.56  E-value=0.67  Score=37.29  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=27.5

Q ss_pred             cCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccCh
Q 048287           30 AAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRD   73 (365)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~   73 (365)
                      ..|+.|+.||+.|=.           ..+.|..|+.||..|.-.
T Consensus         7 GtKR~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    7 GTKRTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCcccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence            469999999999855           334788999999999876

The function of members of this family is unknown.

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=84.33  E-value=0.57  Score=42.86  Aligned_cols=47  Identities=21%  Similarity=0.543  Sum_probs=28.8

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      |.|..|       |..... ..+.+|+.+-++ ..|.|-.|++.|.+ .+++.|.+-
T Consensus         4 FtCnvC-------gEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kC   50 (276)
T KOG2186|consen    4 FTCNVC-------GESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKC   50 (276)
T ss_pred             Eehhhh-------hhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhhh
Confidence            667666       554433 345557666555 55677777777766 566666655

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=82.35  E-value=1.1  Score=42.81  Aligned_cols=26  Identities=38%  Similarity=0.930  Sum_probs=18.5

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      |.|+.-.|     ......+..|+.|.+..+
T Consensus       152 F~CP~skc-----~~~C~~~k~lk~H~K~~H  177 (493)
T COG5236         152 FKCPKSKC-----HRRCGSLKELKKHYKAQH  177 (493)
T ss_pred             hcCCchhh-----hhhhhhHHHHHHHHHhhc
Confidence            77887555     666666788888887654

>PHA00626 hypothetical protein

Probab=80.91  E-value=0.99  Score=31.46  Aligned_cols=36  Identities=17%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCCCCCCCCCchhhhhcCccccCCCCceecccccccccChH
Q 048287           34 KRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQ   74 (365)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~   74 (365)
                      .|+.||........+     .-....+|+|+.||..|+...
T Consensus         2 ~CP~CGS~~Ivrcg~-----cr~~snrYkCkdCGY~ft~~~   37 (59)
T PHA00626          2 SCPKCGSGNIAKEKT-----MRGWSDDYVCCDCGYNDSKDA   37 (59)
T ss_pred             CCCCCCCceeeeece-----ecccCcceEcCCCCCeechhh
Confidence            588888753322211     112247899999999997654

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.71  E-value=2.8  Score=33.84  Aligned_cols=46  Identities=17%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             cccccccccchhhhhhhhcccCCcceecc-CCCccCChhHHHHHHHHh
Q 048287          139 CEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       139 C~~C~k~F~~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      |--|.+.|........- .......|.|. |...|=..-....|...|
T Consensus        58 C~~C~~~f~~~~~~~~~-~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        58 CFGCQGPFPKPPVSPFD-ELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ccCcCCCCCCccccccc-ccccccceeCCCCCCccccccchhhhhhcc
Confidence            66666666543211100 01223456666 666666555555555544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-08
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		1e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 45  AEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGH--NLPWK-------LKQRTSK 95
           ++ +A   +T      + C  CGK F   ++L  H+R H    P+K         QR + 
Sbjct: 34  SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANL 93
Query: 96  EVRKRV------YVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQ 149
              +R       Y CPE  C      ++   L  ++ H     GEK +KC +C K ++ +
Sbjct: 94  RAHQRTHTGEKPYACPE--C-----GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146
Query: 150 SDWKAHSKT-CGTREYKC-DCGTVFSRRDSFITHR 182
            +   H +T  G + YKC +CG  FSRRD+   H+
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT- 158
           + Y CPE  C      ++    + ++KH     GEK +KC +C K ++  SD + H +T 
Sbjct: 3   KPYKCPE--C-----GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 159 CGTREYKC-DCGTVFSRRDSFITHR 182
            G + YKC +CG  FSR D    H+
Sbjct: 56  TGEKPYKCPECGKSFSRSDHLSRHQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	6e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	7e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-04
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	1e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	4e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	7e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	5e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	1e-04
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	5e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	8e-05
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	1e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	1e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	2e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	2e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	7e-04
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	7e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	8e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 61  FLCE--ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRAL 118
           F+C    C K + +  +LQ+H R H          + E   + Y C  K C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH----------TGE---KPYQCDFKDC-----ERRF 48

Query: 119 GDLTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC---DCGTVFS 173
                +K+H  R+H G K ++C+ C ++++     K H++T  G + + C    C   F+
Sbjct: 49  SRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 174 RRDSFITH 181
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH-GEKKWKCEK--CSKRYAVQSDWKAHSKT 158
           ++C    C     ++    L+ ++ H  RKH GEK ++C+   C +R++     K H + 
Sbjct: 7   FMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60

Query: 159 -CGTREYKCD-CGTVFSRRDSFITHR 182
             G + ++C  C   FSR D   TH 
Sbjct: 61  HTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 21/96 (21%)

Query: 66  CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIK 125
           C K + R +NL+ H R H          + E   + Y+C  + C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH----------TGE---KPYMCEHEGC-----SKAFSNASDRA 116

Query: 126 KHFCRKH-GEKKWKCEK--CSKRYAVQSDWKAHSKT 158
           KH  R H  EK + C+   C+KRY   S  + H KT
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
              + C + F   + L  H           +    E  ++ +VC    C      R    
Sbjct: 4   CRWDGCSQEFDSQEQLVHHIN--------SEHIHGE--RKEFVCHWGGCSRE--LRPFKA 51

Query: 121 LTGIKKHFCRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYKC---DCGTVFS 173
              +  H  R+H GEK  KC  E C K Y+   + K H ++  G + Y C    C   FS
Sbjct: 52  QYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS 110

Query: 174 RRDSFITH 181
                  H
Sbjct: 111 NASDRAKH 118

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 30/126 (23%), Positives = 39/126 (30%), Gaps = 26/126 (20%)

Query: 64  EICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTG 123
           E C KGF    +L  H   H          + E   + + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTH----------TGE---KNFTCDSDGC-----DLRFTTKAN 89

Query: 124 IKKHFCRKHGEKKW--KC--EKCSKRYAVQSDWKAHSKT-CGTREYKC---DCGTVFSRR 175
           +KKHF R H  K     C  E C K +   +  K H  +      Y+C    C   FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 176 DSFITH 181
                H
Sbjct: 150 SRLKRH 155

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 97  VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHS 156
           +  R   CP K C     ++   D + ++KH    HG +   C +C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 157 KT-CGTREYKC---DCGTVFSRRDSFITH 181
               G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 29/126 (23%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
            + C K F+ +  ++ H   H                RV+VC E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 123 GIKKHFCRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYKC---DCGTVFSRR 175
            +K+H    H GEK ++C  E C KR+++  + + H +   G R Y C    C   F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 176 DSFITH 181
            +  +H
Sbjct: 108 TNLKSH 113

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-C 159
           Y CP ++C      R       + +H  R H G+K ++C  C + ++       H +T  
Sbjct: 5   YACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58

Query: 160 GTREYKCD-CGTVFSRRDSFITHR 182
           G + + CD CG  F+R D    H 
Sbjct: 59  GEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 22/94 (23%)

Query: 66  CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIK 125
           C + F +  +L  H R H         T +    + + C    C      R       + 
Sbjct: 12  CDRRFSQSGSLTRHIRIH---------TGQ----KPFQCRI--C-----MRNFSRSDHLT 51

Query: 126 KHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 158
            H  R H GEK + C+ C +++A   + K H+K 
Sbjct: 52  THI-RTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 46.0 bits (110), Expect = 6e-07
 Identities = 22/124 (17%), Positives = 32/124 (25%), Gaps = 49/124 (39%)

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
           F C IC + F R  +L  H R H                                     
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH------------------------------------- 26

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFI 179
            TG          EK + C+ C +++A   + K H           D    + S+     
Sbjct: 27  -TG----------EKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLE 75

Query: 180 THRA 183
              A
Sbjct: 76  NEVA 79

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKTC---GTREYKC-DCGTVFSRRDSFITHR 182
               GE  ++C+ CS+ Y   S++  H  T      + Y C  C   F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 12/98 (12%), Positives = 21/98 (21%), Gaps = 46/98 (46%)

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
           + C++C + +    N   H                                H        
Sbjct: 11  YRCKVCSRVYTHISNFCRHYV----------------------------TSHK------- 35

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT 158
                         K + C  C K +  + +  AH K 
Sbjct: 36  -----------RNVKVYPCPFCFKEFTRKDNMTAHVKI 62

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRA 183
                    KC +CS   + ++  + H +  C  R +KC+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 125 KKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT---CGTREYKCD-CGTVFSRRDSFI 179
                R H GEK ++C  C  R+      K H          ++ C  C TV +R+    
Sbjct: 4   GSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 180 TH 181
            H
Sbjct: 63  VH 64

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 91  QRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH-GEKKWKC--EKCSKRYA 147
                  ++R++ C    C     ++     + +K H  R H GEK +KC  E C  R+A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 148 VQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHR 182
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.4 bits (103), Expect = 7e-06
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 61  FLCEI--CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRAL 118
             C+   C K + +  +L+ H R H          + E   + Y C  + C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTH----------TGE---KPYKCTWEGC-----DWRF 57

Query: 119 GDLTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 158
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 30/125 (24%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGD 120
           C  CGK F R  +L  H+R H          + E   + Y CPE  K+           D
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH----------TGE---KPYKCPECGKSFSDK------KD 64

Query: 121 LTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YKC-DCGTVFSRRD 176
           LT   +H  R H GEK +KC +C K ++ +++ +AH +T  T E  Y C +CG  FS+  
Sbjct: 65  LT---RH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLA 119

Query: 177 SFITH 181
               H
Sbjct: 120 HLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.1 bits (108), Expect = 7e-06
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 30/126 (23%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGD 120
           C  CGK F   ++L  H+R H               ++ Y CPE  K+           +
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPECGKSFSQR------AN 92

Query: 121 LTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YKC-DCGTVFSRRD 176
           L     H  R H GEK + C +C K ++  +  +AH +T  T E  YKC +CG  FSR D
Sbjct: 93  LR---AHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSRED 147

Query: 177 SFITHR 182
           +  TH+
Sbjct: 148 NLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 28/124 (22%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGD 120
           C  CGK F +  NL+ H+R H               ++ Y CPE  K+            
Sbjct: 80  CPECGKSFSQRANLRAHQRTHT-------------GEKPYACPECGKSFSQL------AH 120

Query: 121 LTGIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDS 177
           L     H  R H GEK +KC +C K ++ + +   H +T  G + YKC +CG  FSRRD+
Sbjct: 121 LR---AH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA 176

Query: 178 FITH 181
              H
Sbjct: 177 LNVH 180

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 133 GEKKWKCEKCSKRYAVQSDWKAHSKT----CGTREYKCD-CGTVFSRRDSFITHR 182
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 23/98 (23%), Gaps = 45/98 (45%)

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
             CEICG   ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHA------------------------------------ 31

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT 158
                          ++ CE C KR+       AH   
Sbjct: 32  ---------ETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPS-RALG 119
              + C + F     L  H                   +  +VC  + C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 120 DLTGIKKHFCRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYKC---DCGTVF 172
            L     H  R H GEK + C    C K +A   + K H +T  G + +KC    C   F
Sbjct: 77  KL---VNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 173 SRRDSFITH 181
           +       H
Sbjct: 133 ANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
           C   GK F+    L  H R H          + E   + + CP   C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH----------TGE---KPFPCPFPGC-----GKIFARSE 106

Query: 123 GIKKHFCRKH-GEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYKCD 167
            +K H  R H GEK +KC  E C +R+A  SD K H       +     
Sbjct: 107 NLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 24/122 (19%), Positives = 30/122 (24%), Gaps = 50/122 (40%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
           CE+CGK F R   L+ H R H                                       
Sbjct: 11  CEVCGKCFSRKDKLKTHMRCHT-------------------------------------- 32

Query: 123 GIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFIT 180
                     G K +KC+ C    A  S    H +     R +KC  C            
Sbjct: 33  ----------GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82

Query: 181 HR 182
           H 
Sbjct: 83  HL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 133 GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFITHR 182
                KCE C K ++ +   K H +   G + YKC  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 20/96 (20%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
            E CGK F++   L++H+  H          +++     Y CP + C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH----------TQQ---LPYECPHEGC-----DKRFSLPS 47

Query: 123 GIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSK 157
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 21/92 (22%)

Query: 101 VYVCPEKTC-----VHHHPSRALGDLTGIKKHFCRKH-GEKKWKC--EKCSKRYAVQSDW 152
           +YVC  + C      H+           +K H    H  +  ++C  E C KR+++ S  
Sbjct: 1   MYVCHFENCGKAFKKHNQ----------LKVHQ-FSHTQQLPYECPHEGCDKRFSLPSRL 49

Query: 153 KAHSKT-CGTREYKCD-CGTVFSRRDSFITHR 182
           K H K   G    K D C  V      ++ H 
Sbjct: 50  KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFITHR 182
                +K +KC++C   +  + +  +H     G + Y+C  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 50/121 (41%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
           C+ICGK F+R   L  H   H+                                      
Sbjct: 4   CKICGKSFKRSSTLSTHLLIHS-------------------------------------- 25

Query: 123 GIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFIT 180
                       + + C+ C KR+  +SD K H+    G + +KC  CG  FS+  + IT
Sbjct: 26  ----------DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLIT 75

Query: 181 H 181
           H
Sbjct: 76  H 76

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
              CGK + +  +L+ H R H          + E   + Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH----------TGE---KPYHCDWDGC-----GWKFARSD 51

Query: 123 GIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT 158
            + +H+ RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 130 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD---CGTVFSRRDSFITHR 182
           ++          C K Y   S  KAH +T  G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFITH 181
            +    +++KC++C K ++  SD   H +T  G + YKC +CG  F +R   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 23/123 (18%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGD 120
           C  C K F     L++H R H               ++ + CP+  K            +
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKCGKCYFRK------EN 50

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSF 178
           L   +   C    E+ + C  C + +  + + + H  +  G   YKC  C   F ++   
Sbjct: 51  LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110

Query: 179 ITH 181
            +H
Sbjct: 111 QSH 113

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 26/126 (20%), Positives = 35/126 (27%), Gaps = 54/126 (42%)

Query: 61  FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD 120
             CEICGK F+   +L  H+  H+                                    
Sbjct: 8   VACEICGKIFRDVYHLNRHKLSHS------------------------------------ 31

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE----YKC-DCGTVFSRR 175
                       GEK + C  C  R+  +     H ++         Y C  CG  FSR 
Sbjct: 32  ------------GEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYICQSCGKGFSRP 78

Query: 176 DSFITH 181
           D    H
Sbjct: 79  DHLNGH 84

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 123 GIKKHFCRKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFI 179
           G        H GEK + C +C K ++  S    H +   G + YKC +CG  FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 180 THR 182
            H+
Sbjct: 60  NHQ 62

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 50/122 (40%)

Query: 63  CEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLT 122
           C+ CG+ F +  NL +H R H                                      T
Sbjct: 20  CKFCGRHFTKSYNLLIHERTH--------------------------------------T 41

Query: 123 GIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFIT 180
                      E+ + C+ C K +  Q   + H       + +KC +CG  F +  +   
Sbjct: 42  D----------ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV 91

Query: 181 HR 182
           H+
Sbjct: 92  HK 93

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC-DCGTVFSRRDSFITHR 182
                +K++ C+ C + +    +   H +T    R Y C  C   F R+D    HR
Sbjct: 10  LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKT-----CGTREYKC-DCGTVFSRRDSFITH 181
           R H GEK + C  C K +  +     H K           + C  CG  F+RR++   H
Sbjct: 8   RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A Length = 57

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 136 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRA 183
           K+ CE+C  R    S  K H +T    R Y C  C   F  + +   H  
Sbjct: 1   KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 36.9 bits (85), Expect = 8e-04
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFI 179
            +G   H   +   +   C+ C          K H   CG R   C  CG     +D   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 180 THRAFCD 186
           TH   C 
Sbjct: 60  THPEVCG 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.89
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.81
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.79
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.75
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.75
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.75
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.74
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.72
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.71
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.71
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.7
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.7
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.69
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.66
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.64
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.63
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.63
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.62
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.61
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.61
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.59
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.58
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.57
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.55
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.53
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.5
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.5
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.49
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.48
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.45
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.44
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.44
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.44
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.43
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.43
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.4
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.38
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.38
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.37
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.37
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.37
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.36
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.36
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.35
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.33
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.31
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.3
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.3
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.3
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.3
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.29
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.28
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.25
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.24
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.21
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.18
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.18
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.15
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.14
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.12
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.12
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.12
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.11
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.11
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.11
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.11
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.1
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.1
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.1
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.1
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.1
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.1
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.1
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.1
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.1
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.09
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.09
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.09
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.09
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.09
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.08
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.08
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.08
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.08
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.08
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.07
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.05
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.03
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.03
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.03
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.02
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.98
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.97
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.97
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.96
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.96
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.96
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.96
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.96
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.95
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.95
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.95
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.95
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.95
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.95
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.95
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.95
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.95
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.94
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.94
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.94
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.93
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.93
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.93
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.93
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.93
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.92
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.92
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.91
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.91
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.91
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.9
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.9
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.89
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.89
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.89
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.89
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.87
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.87
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.87
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.87
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.87
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.87
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.86
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.86
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.85
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.85
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.84
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.83
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.83
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.82
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.81
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.8
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.79
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.79
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.77
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.77
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.77
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.77
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.77
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.76
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.76
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.75
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.75
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.75
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.75
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.75
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.75
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.74
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.74
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.72
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.72
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.72
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.72
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.72
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.71
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.71
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.71
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.69
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.68
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.68
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.66
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.65
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.64
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.62
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.59
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.58
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.54
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.52
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.49
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.47
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.42
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.41
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.38
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.38
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.32
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.28
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.27
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.26
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.21
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.21
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.16
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.15
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.15
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.13
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.13
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.13
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.12
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.12
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.06
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.04
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.02
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.99
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.99
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.98
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.97
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.97
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.97
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.95
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.95
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.94
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.94
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.93
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.16
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.88
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.88
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.87
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.87
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.84
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.04
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.82
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.82
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.81
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.01
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.8
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.79
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.76
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.74
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.71
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.7
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.69
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.68
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.68
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.66
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.62
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.62
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.62
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.61
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.61
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.65
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.63
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.47
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.46
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.57
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.39
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.36
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.05
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.99
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.96
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.44
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.73
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.7
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.68
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.38
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.82
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.71
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.24
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.59
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	84.9
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	83.47
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	82.61
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	82.03

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=1.6e-27  Score=209.98  Aligned_cols=143  Identities=27%  Similarity=0.538  Sum_probs=89.3

Q ss_pred             CCCCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           26 PPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      ....+++|+|+.|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|.             ++++|.|+
T Consensus        15 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~   81 (190)
T 2i13_A           15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCP   81 (190)
T ss_dssp             ----------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH-------------CCCCEECT
T ss_pred             hcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC-------------CCCCccCc
Confidence            34456789999999999999999999999999999999999999999999999999997             55566666


Q ss_pred             CCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHH
Q 048287          106 EKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRA  183 (365)
Q Consensus       106 ~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~  183 (365)
                      +|       ++.|.....|..|+++|+++++|.|+.|++.|.....|..|+++ +++++|.|+ |++.|.+...|..|++
T Consensus        82 ~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~  154 (190)
T 2i13_A           82 EC-------GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR  154 (190)
T ss_dssp             TT-------CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             cc-------CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHH
Confidence            65       66666666666666666666666666666666666666666655 555566666 6666666666666666


Q ss_pred             Hhhhh
Q 048287          184 FCDAL  188 (365)
Q Consensus       184 ~h~~~  188 (365)
                      .|++.
T Consensus       155 ~H~~~  159 (190)
T 2i13_A          155 THTGE  159 (190)
T ss_dssp             HHHCC
T ss_pred             hcCCC
Confidence            55543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.94  E-value=5.8e-28  Score=212.90  Aligned_cols=145  Identities=28%  Similarity=0.578  Sum_probs=133.9

Q ss_pred             CCCCCCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceee
Q 048287           24 NNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYV  103 (365)
Q Consensus        24 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~  103 (365)
                      ........+++|+.|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|.             ++++|.
T Consensus        41 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~  107 (190)
T 2i13_A           41 QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT-------------GEKPYA  107 (190)
T ss_dssp             GGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH-------------TCCCEE
T ss_pred             HHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcC-------------CCCCCc
Confidence            3344456789999999999999999999999999999999999999999999999999997             889999


Q ss_pred             CCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHH
Q 048287          104 CPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITH  181 (365)
Q Consensus       104 C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H  181 (365)
                      |++|       ++.|.....|..|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|..|
T Consensus       108 C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H  180 (190)
T 2i13_A          108 CPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH  180 (190)
T ss_dssp             CTTT-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH
T ss_pred             CCCC-------CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHH
Confidence            9999       99999999999999999999999999999999999999999999 889999999 99999999999999


Q ss_pred             HHHhhhh
Q 048287          182 RAFCDAL  188 (365)
Q Consensus       182 ~~~h~~~  188 (365)
                      +++|++.
T Consensus       181 ~~~H~~~  187 (190)
T 2i13_A          181 QRTHTGK  187 (190)
T ss_dssp             HTTC---
T ss_pred             HHhcCCC
Confidence            9999764

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=9.2e-25  Score=185.61  Aligned_cols=137  Identities=21%  Similarity=0.368  Sum_probs=127.6

Q ss_pred             CCCCCCCCCCCCCchhhhhcCcc---ccCCCCceecccc-----cccccChHhHHHHHHhcCCCcccccccccccCCcee
Q 048287           31 AKKKRNLPGTPDPEAEVIALSPK---TLMATNRFLCEIC-----GKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVY  102 (365)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~k---~~~~~k~~~C~~C-----gk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~  102 (365)
                      .+++|+.|++.|.....|..|++   +|.++++|.|++|     ++.|.....|..|++.|.             ++++|
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~~   68 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKPH   68 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCCC
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCCc
Confidence            57899999999999999999998   7899999999753     499999999999999997             88999


Q ss_pred             eCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCcccccc--ccccccchhhhhhhh-cc-cCCcceecc---CCCccC
Q 048287          103 VCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK--CSKRYAVQSDWKAHS-KT-CGTREYKCD---CGTVFS  173 (365)
Q Consensus       103 ~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~-~~-~~~kpy~C~---Cgk~F~  173 (365)
                      .|++  |       ++.|.....|..|+++|+++++|+|++  |++.|.....|..|+ ++ .++++|.|+   |++.|.
T Consensus        69 ~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  141 (155)
T 2gli_A           69 KCTFEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT  141 (155)
T ss_dssp             CCCSTTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEES
T ss_pred             cCCCCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccC
Confidence            9986  6       999999999999999999999999998  999999999999999 66 678999994   999999


Q ss_pred             ChhHHHHHHHHhhh
Q 048287          174 RRDSFITHRAFCDA  187 (365)
Q Consensus       174 ~~~~L~~H~~~h~~  187 (365)
                      +...|..|++.|++
T Consensus       142 ~~~~L~~H~~~hhg  155 (155)
T 2gli_A          142 DPSSLRKHVKTVHG  155 (155)
T ss_dssp             SHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHhhcC
Confidence            99999999999874

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.91  E-value=9.6e-25  Score=192.19  Aligned_cols=142  Identities=20%  Similarity=0.322  Sum_probs=127.3

Q ss_pred             CCCCcCCCCC--CCCCCCCCchhhhhcCccccCCCCceec--ccccccccChHhHHHHHHhcCCCcccccccccccCCce
Q 048287           26 PPNTAAKKKR--NLPGTPDPEAEVIALSPKTLMATNRFLC--EICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRV  101 (365)
Q Consensus        26 ~~~~~~~~~c--~~c~~~~~~~~~l~~h~k~~~~~k~~~C--~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~  101 (365)
                      .+...++|+|  +.|++.|.....|..|+++|.++++|.|  ++|++.|.....|..|+++|.             ++++
T Consensus         6 ~~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~   72 (190)
T 1tf6_A            6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKN   72 (190)
T ss_dssp             ----CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCC
T ss_pred             ccCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCc
Confidence            4556788999  7999999999999999999999999999  889999999999999999998             7889


Q ss_pred             eeCC--CCCccCCCCCCccCChhHHHHHH-hhh-cCCCcccc--ccccccccchhhhhhhhcc-cCCcceec--c-CCCc
Q 048287          102 YVCP--EKTCVHHHPSRALGDLTGIKKHF-CRK-HGEKKWKC--EKCSKRYAVQSDWKAHSKT-CGTREYKC--D-CGTV  171 (365)
Q Consensus       102 ~~C~--~C~C~~~~~~~~f~~~~~L~~H~-~~H-~~ekp~~C--~~C~k~F~~~~~L~~H~~~-~~~kpy~C--~-Cgk~  171 (365)
                      |.|+  .|       ++.|.....|..|+ +.| .++++|+|  +.|++.|.....|..|+++ +++++|.|  + |++.
T Consensus        73 ~~C~~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~  145 (190)
T 1tf6_A           73 FTCDSDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKR  145 (190)
T ss_dssp             EECCSSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCB
T ss_pred             eeCCCCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCch
Confidence            9999  67       99999999999999 666 46889999  8899999999999999999 78899999  5 9999


Q ss_pred             cCChhHHHHHHHHhhh
Q 048287          172 FSRRDSFITHRAFCDA  187 (365)
Q Consensus       172 F~~~~~L~~H~~~h~~  187 (365)
                      |.+...|..|+++|++
T Consensus       146 F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          146 FSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CSSHHHHHHHHTSSCS
T ss_pred             hcCHHHHHHHHHHhCC
Confidence            9999999999999876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.89  E-value=3.2e-23  Score=182.41  Aligned_cols=138  Identities=23%  Similarity=0.392  Sum_probs=126.6

Q ss_pred             CcCCCCC--CCCCCCCCchhhhhcCccccCCCCceecc--cccccccChHhHHHHH-HhcCCCcccccccccccCCceee
Q 048287           29 TAAKKKR--NLPGTPDPEAEVIALSPKTLMATNRFLCE--ICGKGFQRDQNLQLHR-RGHNLPWKLKQRTSKEVRKRVYV  103 (365)
Q Consensus        29 ~~~~~~c--~~c~~~~~~~~~l~~h~k~~~~~k~~~C~--~Cgk~F~~~~~L~~H~-~~H~~~~~~~~~~~~~~~~k~~~  103 (365)
                      .+++++|  +.|++.|.....|..|+++|.++++|.|+  .|++.|.+...|..|+ +.|.            .++++|.
T Consensus        39 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~------------~~~~~~~  106 (190)
T 1tf6_A           39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN------------IKICVYV  106 (190)
T ss_dssp             CCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSS------------TTTSCCE
T ss_pred             CCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcC------------CCcceee
Confidence            4578999  89999999999999999999999999999  8999999999999999 6663            2678999


Q ss_pred             C--CCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc--ccccccchhhhhhhhcccCCcceecc----CCCccCCh
Q 048287          104 C--PEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK--CSKRYAVQSDWKAHSKTCGTREYKCD----CGTVFSRR  175 (365)
Q Consensus       104 C--~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~~~~kpy~C~----Cgk~F~~~  175 (365)
                      |  +.|       ++.|.....|..|+++|+++++|+|..  |++.|.....|..|+++|..  |.|.    |++.|...
T Consensus       107 C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~--~~C~~~~~C~~~f~~~  177 (190)
T 1tf6_A          107 CHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVGKTW  177 (190)
T ss_dssp             ECSSSS-------CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS--CCCCSTTTCCCCCSCH
T ss_pred             CCCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC--CcCCCCCcCCCccccH
Confidence            9  888       999999999999999999999999988  99999999999999999544  8874    99999999


Q ss_pred             hHHHHHHHHhhh
Q 048287          176 DSFITHRAFCDA  187 (365)
Q Consensus       176 ~~L~~H~~~h~~  187 (365)
                      ..|..|+++|++
T Consensus       178 ~~l~~H~~~h~~  189 (190)
T 1tf6_A          178 TLYLKHVAECHQ  189 (190)
T ss_dssp             HHHHHHHTTCC-
T ss_pred             HHHHHHHHhhcC
Confidence            999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.88  E-value=1.1e-23  Score=176.08  Aligned_cols=110  Identities=17%  Similarity=0.319  Sum_probs=101.2

Q ss_pred             hhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHH
Q 048287           48 IALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKH  127 (365)
Q Consensus        48 l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H  127 (365)
                      +..|..+|.++++|+|++|++.|.....|.+|+++|.             ++++|.|++|       ++.|.....|..|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H   69 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKH   69 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHH
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------Ceecccccchhhh
Confidence            4456678899999999999999999999999999997             8999999999       9999999999999


Q ss_pred             HhhhcCCCccccccccccccchhhhhhhhcc-cCC------cceecc-CCCccCChhH
Q 048287          128 FCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT------REYKCD-CGTVFSRRDS  177 (365)
Q Consensus       128 ~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~------kpy~C~-Cgk~F~~~~~  177 (365)
                      +++|++++||.|++|++.|.....|..|+++ |++      ++|+|. |++.|.+...
T Consensus        70 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             HHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             ccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            9999999999999999999999999999999 765      459999 9999986543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=6e-23  Score=166.43  Aligned_cols=110  Identities=26%  Similarity=0.675  Sum_probs=102.7

Q ss_pred             CCCCceeccc--ccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC--CCCccCCCCCCccCChhHHHHHHhhh
Q 048287           56 MATNRFLCEI--CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP--EKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus        56 ~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      +++++|.|.+  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|+++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            4678999997  9999999999999999997             78999999  57       99999999999999999


Q ss_pred             cCCCccccccccccccchhhhhhhhcc-cCCcceec--c-CCCccCChhHHHHHHHHh
Q 048287          132 HGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC--D-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       132 ~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C--~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      +++++|.|++|++.|.....|..|+++ +++++|.|  + |++.|.+...|..|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 88999999  7 999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=1.1e-22  Score=165.84  Aligned_cols=111  Identities=21%  Similarity=0.496  Sum_probs=90.1

Q ss_pred             CCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhh---hc
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCR---KH  132 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~---H~  132 (365)
                      +++++|+|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            45677888888888888888888888886             6778888887       8888888888888875   46


Q ss_pred             CCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHHhh
Q 048287          133 GEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       133 ~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      ++++|.|.+|++.|.....|..|+++ +++++|.|+ |++.|.+...|..|++..|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            77888888888888888888888888 677888888 8888888888888887644

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=166.97  Aligned_cols=119  Identities=21%  Similarity=0.312  Sum_probs=94.8

Q ss_pred             CcCCCCCCCCCCCCCchhhhhcCccc-cCCCCc--------eecccccccccChHhHHHHHHhcCCCcccccccccccCC
Q 048287           29 TAAKKKRNLPGTPDPEAEVIALSPKT-LMATNR--------FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRK   99 (365)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~k~-~~~~k~--------~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~   99 (365)
                      ....++|..|++.|.....|..|+++ |....+        |.|++|++.|.....|..|++.|.             ++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~   88 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------GE   88 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------CC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------CC
Confidence            34677888888888888888888876 665544        778888888888888888888886             67


Q ss_pred             ceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCcccccc--ccccccchhhhhhhhcc-cCCcceecc
Q 048287          100 RVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYKCD  167 (365)
Q Consensus       100 k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~~~kpy~C~  167 (365)
                      ++|.|++  |       ++.|.....|..|+++|+++++|+|.+  |++.|.....|..|+++ +++++|.|.
T Consensus        89 ~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           89 KPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            7888877  6       888888888888888888888888886  88888888888888888 677888773

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=8.9e-22  Score=160.49  Aligned_cols=117  Identities=17%  Similarity=0.326  Sum_probs=107.7

Q ss_pred             CCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           28 NTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      +...+++|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|..|++.|.          .+.++++|.|++|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~----------~~~~~~~~~C~~C   72 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNC----------MNRSEQVFTCSVC   72 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCC----------CCSCCCCEECSSS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhh----------cCCCCCCeECCCC
Confidence            345789999999999999999999999999999999999999999999999998752          1237889999999


Q ss_pred             CccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCC
Q 048287          108 TCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT  161 (365)
Q Consensus       108 ~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  161 (365)
                             ++.|.....|..|+++|+++++|+|.+|++.|.....|..|++. |..
T Consensus        73 -------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           73 -------QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             -------CCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             -------CCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence                   99999999999999999999999999999999999999999986 643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.85  E-value=1e-21  Score=160.52  Aligned_cols=111  Identities=27%  Similarity=0.566  Sum_probs=88.9

Q ss_pred             CCCceecc--cccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           57 ATNRFLCE--ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        57 ~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      ..++|.|+  .|++.|.+...|..|++.|              ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCC
Confidence            35678888  7888888888888888877              4678888888       88888888888888888888


Q ss_pred             Ccccccc--ccccccchhhhhhhhcc-cCCcceec--c-CCCccCChhHHHHHHHHhhhh
Q 048287          135 KKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYKC--D-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       135 kp~~C~~--C~k~F~~~~~L~~H~~~-~~~kpy~C--~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      ++|.|..  |++.|.....|..|+++ +++++|.|  + |++.|.+...|..|+++|++.
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~  120 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA  120 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC--
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccc
Confidence            8888875  88888888888888888 77888888  5 888888888888888887653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=1.7e-21  Score=157.87  Aligned_cols=111  Identities=18%  Similarity=0.371  Sum_probs=105.7

Q ss_pred             CcCCCCCCC--CCCCCCchhhhhcCccccCCCCceecc--cccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           29 TAAKKKRNL--PGTPDPEAEVIALSPKTLMATNRFLCE--ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        29 ~~~~~~c~~--c~~~~~~~~~l~~h~k~~~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      .+++|+|..  |++.|.....|..|+++|.++++|.|+  .|++.|.....|..|++.|.             ++++|.|
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C   69 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-------------GVKPFQC   69 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------CCCCEEC
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcC-------------CCCCccC
Confidence            457899997  999999999999999999999999999  79999999999999999997             8899999


Q ss_pred             CCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc--ccccccccchhhhhhhhccc
Q 048287          105 PEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC--EKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus       105 ~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C--~~C~k~F~~~~~L~~H~~~~  159 (365)
                      ++|       ++.|.....|..|+++|+++++|+|  +.|++.|.....|..|+++|
T Consensus        70 ~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           70 KTC-------QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             TTT-------CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             Ccc-------CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999       9999999999999999999999999  89999999999999999863

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=2.3e-21  Score=158.50  Aligned_cols=114  Identities=17%  Similarity=0.305  Sum_probs=102.5

Q ss_pred             cCCCCCC--CCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC-
Q 048287           30 AAKKKRN--LPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE-  106 (365)
Q Consensus        30 ~~~~~c~--~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~-  106 (365)
                      +++++|+  .|++.|.....|..|+++| +.++|.|++|++.|.....|..|++.|.             ++++|.|++ 
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~   68 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-------------GEKPFQCTFE   68 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS-------------CCCCEECCST
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCeeCCCC
Confidence            4678999  8999999999999999999 8899999999999999999999999998             889999986 


Q ss_pred             -CCccCCCCCCccCChhHHHHHHhhhcCCCccccc--cccccccchhhhhhhhcc-cCCcce
Q 048287          107 -KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREY  164 (365)
Q Consensus       107 -C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kpy  164 (365)
                       |       ++.|.....|..|+++|+++++|+|.  .|++.|.....|..|+++ ++++++
T Consensus        69 ~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           69 GC-------GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TC-------CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CC-------cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence             7       99999999999999999999999995  599999999999999999 777765

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=1e-20  Score=160.81  Aligned_cols=120  Identities=21%  Similarity=0.323  Sum_probs=103.1

Q ss_pred             CCCceecccccccccChHhHHHHHHh-cCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           57 ATNRFLCEICGKGFQRDQNLQLHRRG-HNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        57 ~~k~~~C~~Cgk~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ....|.|++|++.|.+...|..|++. |......     .......|.|++|       ++.|.....|..|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~-----~~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-----NNHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC-----SSCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc-----CCccccccCCCCc-------ccccCCHHHHHHHHHhcCCCC
Confidence            45789999999999999999999998 6411000     0001123789998       999999999999999999999


Q ss_pred             cccccc--ccccccchhhhhhhhcc-cCCcceecc---CCCccCChhHHHHHHHHhhhh
Q 048287          136 KWKCEK--CSKRYAVQSDWKAHSKT-CGTREYKCD---CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       136 p~~C~~--C~k~F~~~~~L~~H~~~-~~~kpy~C~---Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      +|+|.+  |++.|.....|..|+++ +++++|.|.   |++.|.+...|..|+++|++.
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~  148 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD  148 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSC
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCC
Confidence            999998  99999999999999999 789999997   999999999999999998764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.81  E-value=4.5e-21  Score=160.08  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=96.5

Q ss_pred             CCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           28 NTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .++++|+|++|++.|.....|..|+++|+++++|+|++|++.|.+...|..|+++|.             ++++|.|++|
T Consensus        18 ~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   84 (133)
T 2lt7_A           18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT-------------GERRYQCLAC   84 (133)
T ss_dssp             TTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHH-------------TCCCEEESSS
T ss_pred             CCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccC-------------CCccccCCCC
Confidence            356789999999999999999999999999999999999999999999999999997             8999999999


Q ss_pred             CccCCCCCCccCChhHHHHHHhhhcCCC------ccccccccccccchhh
Q 048287          108 TCVHHHPSRALGDLTGIKKHFCRKHGEK------KWKCEKCSKRYAVQSD  151 (365)
Q Consensus       108 ~C~~~~~~~~f~~~~~L~~H~~~H~~ek------p~~C~~C~k~F~~~~~  151 (365)
                             ++.|.....|..|+++|++++      +|+|.+|++.|..+..
T Consensus        85 -------~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           85 -------GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             -------CCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             -------CCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence                   999999999999999998764      5899999998876544

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.79  E-value=6.1e-20  Score=155.67  Aligned_cols=118  Identities=24%  Similarity=0.457  Sum_probs=105.5

Q ss_pred             CCceecccccccccChHhHHHHHH---hcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRR---GHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~---~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +.+|.|++|++.|.+...|..|++   .|.             ++++|.|++|+|  ..|++.|.....|..|+++|+++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~-------------~~~~~~C~~c~C--~~c~~~f~~~~~l~~H~~~h~~~   65 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG-------------ERKEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   65 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS-------------CSSCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC-------------CCcceeCCCCCc--cchhhhhhhHHHHHHHHHhcCCC
Confidence            357999999999999999999998   454             789999998755  34579999999999999999999


Q ss_pred             Ccccccc--ccccccchhhhhhhhcc-cCCcceecc---CCCccCChhHHHHHH-HHhhhhhh
Q 048287          135 KKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYKCD---CGTVFSRRDSFITHR-AFCDALAE  190 (365)
Q Consensus       135 kp~~C~~--C~k~F~~~~~L~~H~~~-~~~kpy~C~---Cgk~F~~~~~L~~H~-~~h~~~~~  190 (365)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|+   |++.|.+...|..|+ +.|.+...
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            9999985  99999999999999999 789999997   999999999999999 66765433

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.75  E-value=1.5e-18  Score=137.81  Aligned_cols=91  Identities=25%  Similarity=0.549  Sum_probs=71.7

Q ss_pred             CCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ..+++|.|.+|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCC
Confidence            34567888888888888888888888876             6778888887       888888888888888888888


Q ss_pred             ccccccccccccchhhhhhhhcc-cCCcceec
Q 048287          136 KWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC  166 (365)
Q Consensus       136 p~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C  166 (365)
                      +|+|.+|++.|.....|..|+++ +++++|.+
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            88888888888888888888877 66677653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.2e-18  Score=134.22  Aligned_cols=89  Identities=27%  Similarity=0.509  Sum_probs=71.8

Q ss_pred             cCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           55 LMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        55 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      ..++++|.|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|+++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   62 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDE   62 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCC
Confidence            456678888888888888888888888886             6778888887       88888888888888888888


Q ss_pred             Cccccccccccccchhhhhhhhcc-cCCcc
Q 048287          135 KKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  163 (365)
Q Consensus       135 kp~~C~~C~k~F~~~~~L~~H~~~-~~~kp  163 (365)
                      ++|+|.+|++.|.....|..|+++ +++++
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            888888888888888888888887 55543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.75  E-value=1.5e-18  Score=138.27  Aligned_cols=95  Identities=16%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHh
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC  129 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~  129 (365)
                      .++++|.++++|.|.+|++.|.....|..|++.|.               ++|.|++|       ++.|.....|..|++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES   63 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH
Confidence            46778899999999999999999999999999983               58999999       999999999999995


Q ss_pred             hhcCCCccccccccccccchhhhhhhhc-c-cCCcceecc
Q 048287          130 RKHGEKKWKCEKCSKRYAVQSDWKAHSK-T-CGTREYKCD  167 (365)
Q Consensus       130 ~H~~ekp~~C~~C~k~F~~~~~L~~H~~-~-~~~kpy~C~  167 (365)
                       |+++++|+|++|++.|.....|..|++ + .++++|.|.
T Consensus        64 -H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 -KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence             999999999999999999999999998 5 677888874

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=4e-19  Score=143.34  Aligned_cols=94  Identities=15%  Similarity=0.259  Sum_probs=63.8

Q ss_pred             hhhhhcCccccCCCCceecccccccccChHhHHHHHHh--cCCCcccccccccccCCcee-eCCCCCccCCCCCCcc--C
Q 048287           45 AEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRG--HNLPWKLKQRTSKEVRKRVY-VCPEKTCVHHHPSRAL--G  119 (365)
Q Consensus        45 ~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~--H~~~~~~~~~~~~~~~~k~~-~C~~C~C~~~~~~~~f--~  119 (365)
                      ...|..|+++|.++++|.|++|++.|.....|..|++.  |.             ..+++ .|++|       ++.|  .
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------Ccccccc
Confidence            34577888888888888888888888888888888887  43             33333 36666       5555  5


Q ss_pred             ChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc
Q 048287          120 DLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       120 ~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      ....|..|+++|+++++|+|++|++.|.....|..|+++
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHH
Confidence            556666666666666666666666666666666666655

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.73  E-value=6.1e-18  Score=134.21  Aligned_cols=96  Identities=18%  Similarity=0.299  Sum_probs=89.7

Q ss_pred             CCCCCCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceee
Q 048287           24 NNPPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYV  103 (365)
Q Consensus        24 ~~~~~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~  103 (365)
                      ..+....++++|..|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|.             ++++|.
T Consensus         9 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~   75 (106)
T 2ee8_A            9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-------------KEKPFK   75 (106)
T ss_dssp             CCCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSC-------------CCCTTS
T ss_pred             cCCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhC-------------CCCCeE
Confidence            3344556789999999999999999999999999999999999999999999999999998             889999


Q ss_pred             CCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287          104 CPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus       104 C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      |++|       ++.|.....|..|+++|+++++|.+
T Consensus        76 C~~C-------~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           76 CQEC-------GKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CSSS-------CCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCc-------CCcccCHHHHHHHHHHhCCCCCCcC
Confidence            9999       9999999999999999999999875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=1.2e-17  Score=133.49  Aligned_cols=89  Identities=24%  Similarity=0.562  Sum_probs=83.3

Q ss_pred             cccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCcc
Q 048287           95 KEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVF  172 (365)
Q Consensus        95 ~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F  172 (365)
                      .|.++++|.| .|       ++.|.....|..|+++|.++++|+|.+|++.|.....|..|+++ +++++|.|. |++.|
T Consensus         4 ~h~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   75 (110)
T 2csh_A            4 GSSGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF   75 (110)
T ss_dssp             CCCCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEE
T ss_pred             CCCCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchh
Confidence            3568999999 88       99999999999999999999999999999999999999999999 789999999 99999


Q ss_pred             CChhHHHHHHHHhhhhhhh
Q 048287          173 SRRDSFITHRAFCDALAEE  191 (365)
Q Consensus       173 ~~~~~L~~H~~~h~~~~~~  191 (365)
                      .....|..|++.|+.....
T Consensus        76 ~~~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           76 MWRDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHccccccc
Confidence            9999999999999875443

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.5e-17  Score=129.23  Aligned_cols=85  Identities=25%  Similarity=0.510  Sum_probs=68.3

Q ss_pred             CCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC-
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE-  134 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e-  134 (365)
                      .++++|.|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|+++ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSV   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            45678888888888888888888888886             6778888887       88888888888888888876 


Q ss_pred             -Cccccccccccccchhhhhhhhcc-cC
Q 048287          135 -KKWKCEKCSKRYAVQSDWKAHSKT-CG  160 (365)
Q Consensus       135 -kp~~C~~C~k~F~~~~~L~~H~~~-~~  160 (365)
                       ++|+|.+|++.|.....|..|++. |.
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCceECCCccchhCCHHHHHHHHHHhcC
Confidence             778888888888888888888764 54

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.71  E-value=8.3e-18  Score=129.16  Aligned_cols=84  Identities=23%  Similarity=0.514  Sum_probs=60.8

Q ss_pred             CCceecc--cccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           58 TNRFLCE--ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        58 ~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +++|.|+  .|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   61 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEK   61 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCCC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCCC
Confidence            4677776  47777777777777777776             6677777777       777777777777777777777


Q ss_pred             ccccccccccccchhhhhhhhcc-cCC
Q 048287          136 KWKCEKCSKRYAVQSDWKAHSKT-CGT  161 (365)
Q Consensus       136 p~~C~~C~k~F~~~~~L~~H~~~-~~~  161 (365)
                      +|+|..|++.|.....|..|+++ +++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           62 PFACDICGRKFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             CEECTTTCCEESSHHHHHHHHGGGGC-
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhccc
Confidence            77777777777777777777776 443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=3.3e-18  Score=137.94  Aligned_cols=95  Identities=15%  Similarity=0.207  Sum_probs=86.2

Q ss_pred             HhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhh--hcCCCccc-cccccccc--cc
Q 048287           74 QNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCR--KHGEKKWK-CEKCSKRY--AV  148 (365)
Q Consensus        74 ~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~--H~~ekp~~-C~~C~k~F--~~  148 (365)
                      ..|..|+++|.             ++++|.|++|       ++.|.....|..|+++  |.+++++. |.+|++.|  ..
T Consensus         5 ~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~   64 (115)
T 2dmi_A            5 SSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR   64 (115)
T ss_dssp             CCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCC
T ss_pred             hhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCccccccc
Confidence            45667777776             8999999999       9999999999999999  88787765 99999999  99


Q ss_pred             hhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          149 QSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       149 ~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      ...|..|+++ .++++|.|+ |++.|.+...|..|++.|+..
T Consensus        65 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           65 KRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             HHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            9999999999 789999999 999999999999999998764

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.4e-17  Score=133.17  Aligned_cols=86  Identities=22%  Similarity=0.448  Sum_probs=81.5

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      ..|+++++|.| +|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|+
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~   61 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHT   61 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTC
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcC
Confidence            36788999999 99999999999999999998             7899999999       999999999999999999


Q ss_pred             CCCccccccccccccchhhhhhhhccc
Q 048287          133 GEKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus       133 ~ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      ++++|+|.+|++.|.....|..|++++
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~~   88 (110)
T 2csh_A           62 GIKPYECNICAKRFMWRDSFHRHVTSC   88 (110)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHH
T ss_pred             CCCCeeCCCCcchhcCHHHHHHHHHHc
Confidence            999999999999999999999999883

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.70  E-value=1.2e-17  Score=125.88  Aligned_cols=79  Identities=34%  Similarity=0.632  Sum_probs=54.4

Q ss_pred             ceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      +|.|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|+++++|+|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            4667777777777777777776665             5666777766       6777777777777777776666666


Q ss_pred             ccccccccchhhhhhhhcc
Q 048287          140 EKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       140 ~~C~k~F~~~~~L~~H~~~  158 (365)
                      ..|++.|.....|..|+++
T Consensus        61 ~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHh
Confidence            6666666666666666665

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=4.8e-17  Score=126.53  Aligned_cols=90  Identities=14%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           28 NTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      ..+++++|..|++.|.....|..|+++|.++++|.|++|++.|.....|..|++.|.             ++++|.|++|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C   70 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------------DERPFKCQIC   70 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CCCCEECSSS
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC
Confidence            456789999999999999999999999999999999999999999999999999998             8899999999


Q ss_pred             CccCCCCCCccCChhHHHHHHhhhcCCCcc
Q 048287          108 TCVHHHPSRALGDLTGIKKHFCRKHGEKKW  137 (365)
Q Consensus       108 ~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~  137 (365)
                             ++.|.....|..|+++|+++++.
T Consensus        71 -------~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           71 -------PYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             -------SCEESSHHHHHHHHTTCCSCCCC
T ss_pred             -------CCccCCHHHHHHHHHHhcCCCCC
Confidence                   99999999999999999998754

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=2.7e-17  Score=123.93  Aligned_cols=80  Identities=25%  Similarity=0.549  Sum_probs=76.4

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHH
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSF  178 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L  178 (365)
                      +|.|++|       ++.|.....|..|+++|.++++|+|..|++.|.....|..|+++ +++++|.|. |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5899998       99999999999999999999999999999999999999999999 889999999 99999999999


Q ss_pred             HHHHHHhhh
Q 048287          179 ITHRAFCDA  187 (365)
Q Consensus       179 ~~H~~~h~~  187 (365)
                      ..|+++|++
T Consensus        74 ~~H~~~H~g   82 (82)
T 2kmk_A           74 ITHSRKHTG   82 (82)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHhhCC
Confidence            999999863

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=2.9e-17  Score=126.11  Aligned_cols=84  Identities=25%  Similarity=0.587  Sum_probs=77.9

Q ss_pred             CCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccC
Q 048287           98 RKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFS  173 (365)
Q Consensus        98 ~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~  173 (365)
                      ++++|.|++  |       ++.|.....|..|+++|.++++|.|..|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            367999984  7       99999999999999999999999999999999999999999999 889999999 999999


Q ss_pred             ChhHHHHHHHHhhhh
Q 048287          174 RRDSFITHRAFCDAL  188 (365)
Q Consensus       174 ~~~~L~~H~~~h~~~  188 (365)
                      +...|..|+++|++.
T Consensus        74 ~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           74 RSDERKRHTKIHLRQ   88 (90)
T ss_dssp             SHHHHHHHHGGGGC-
T ss_pred             CHHHHHHHHHHhccc
Confidence            999999999998763

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.2e-16  Score=123.92  Aligned_cols=83  Identities=24%  Similarity=0.488  Sum_probs=77.6

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCC--cceecc-CCCcc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT--REYKCD-CGTVF  172 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~--kpy~C~-Cgk~F  172 (365)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ +++  ++|.|. |++.|
T Consensus         3 ~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f   75 (95)
T 2yt9_A            3 SGSSGVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF   75 (95)
T ss_dssp             CCCSCEECSSS-------CCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCB
T ss_pred             CCCCCeECCCC-------CCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchh
Confidence            37899999999       99999999999999999999999999999999999999999999 665  899999 99999


Q ss_pred             CChhHHHHHHHHhh
Q 048287          173 SRRDSFITHRAFCD  186 (365)
Q Consensus       173 ~~~~~L~~H~~~h~  186 (365)
                      .+...|..|++..|
T Consensus        76 ~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           76 SRPDHLNGHIKQVH   89 (95)
T ss_dssp             SSHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999997433

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.64  E-value=2.2e-16  Score=120.81  Aligned_cols=82  Identities=22%  Similarity=0.578  Sum_probs=71.2

Q ss_pred             CCceeccc--ccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcC
Q 048287           58 TNRFLCEI--CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus        58 ~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      .++|.|++  |++.|.....|..|++.|.             ++++|.|++  |       ++.|.....|..|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            46788988  9999999999999998887             788899974  6       8999999999999999999


Q ss_pred             CCccccccccccccchhhhhhhhccc
Q 048287          134 EKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus       134 ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      +++|+|..|++.|.....|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999998888764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.63  E-value=3.7e-16  Score=122.28  Aligned_cols=83  Identities=19%  Similarity=0.496  Sum_probs=63.8

Q ss_pred             CCCceeccc--ccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhc
Q 048287           57 ATNRFLCEI--CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        57 ~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      ..++|.|.+  |++.|.....|..|++.|.             ++++|.|++  |       ++.|.....|..|+++|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKHT   71 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHHT
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhC
Confidence            346778875  8888888888888888776             677788863  5       788888888888888888


Q ss_pred             CCCccccccccccccchhhhhhhhccc
Q 048287          133 GEKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus       133 ~ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      ++++|+|.+|++.|.....|..|+++|
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            888888887877777777777777763

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=2.5e-17  Score=126.51  Aligned_cols=85  Identities=18%  Similarity=0.295  Sum_probs=80.0

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcccCCcceecc-CCCccCChhH
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDS  177 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~  177 (365)
                      +++|.|++|       ++.|.....|..|+++|+++++|+|..|++.|.....|..|++++..++|.|+ |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999999       99999999999999999999999999999999999999999999556999999 9999999999


Q ss_pred             HHHHHHHhhhhhh
Q 048287          178 FITHRAFCDALAE  190 (365)
Q Consensus       178 L~~H~~~h~~~~~  190 (365)
                      |..|++.++++..
T Consensus        74 L~~H~~~~h~~~~   86 (88)
T 1llm_C           74 LENEVARLKKLVG   86 (88)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHhc
Confidence            9999999987653

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.63  E-value=1.3e-16  Score=127.06  Aligned_cols=92  Identities=14%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             CCCCcCCCCCCCCCCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           26 PPNTAAKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      ....+++|+|..|++.|.....|..|+++|  .++|.|++|++.|.....|..|++ |.             ++++|.|+
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~-------------~~~~~~C~   73 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KC-------------EYKKLTCL   73 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HC-------------STGGGEEG
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cC-------------CCCCccCc
Confidence            345567899999999999999999999998  579999999999999999999996 87             89999999


Q ss_pred             CCCccCCCCCCccCChhHHHHHHh-hhcCCCccccc
Q 048287          106 EKTCVHHHPSRALGDLTGIKKHFC-RKHGEKKWKCE  140 (365)
Q Consensus       106 ~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ekp~~C~  140 (365)
                      +|       ++.|.....|..|++ +|.++++|.|.
T Consensus        74 ~C-------~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           74 EC-------MRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             GG-------TEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cc-------cchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99       999999999999997 99999999885

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.62  E-value=3.6e-16  Score=111.88  Aligned_cols=58  Identities=28%  Similarity=0.617  Sum_probs=46.6

Q ss_pred             CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ||||+|++||+.|.+...|.+|+++|+             ++++|.|++|       ++.|.....|..|+++|+||+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            678888888888888888888888886             7788888887       888888888888888887764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=8.7e-16  Score=116.71  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             hhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHH
Q 048287           47 VIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKK  126 (365)
Q Consensus        47 ~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~  126 (365)
                      .+..|+++|.++++|.|.+|++.|.....|.+|++.|+...         ..+++|.|++|       ++.|.....|..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~---------~~~~~~~C~~C-------~~~f~~~~~L~~   65 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN---------FVPAAFVCSKC-------GKTFTRRNTMAR   65 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS---------CCCCCEECSSS-------CCEESCHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc---------CCCcceECCCC-------CChhCCHHHHHH
Confidence            46789999999999999999999999999999998876110         01378999999       999999999999


Q ss_pred             HHhhhcCCCccccccccccc
Q 048287          127 HFCRKHGEKKWKCEKCSKRY  146 (365)
Q Consensus       127 H~~~H~~ekp~~C~~C~k~F  146 (365)
                      |+++|++++++.|..|+..|
T Consensus        66 H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           66 HADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHccCCCCcccCCCCCCC
Confidence            99999999999999999865

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.61  E-value=1e-15  Score=119.74  Aligned_cols=85  Identities=26%  Similarity=0.602  Sum_probs=78.3

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc--cccccccchhhhhhhhcc-cCCcceecc-CCCcc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVF  172 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F  172 (365)
                      ..+++|.|.+..|     ++.|.....|..|+++|.++++|+|.  .|++.|.....|..|+++ +++++|.|. |++.|
T Consensus        11 ~~~~~~~C~~~~C-----~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f   85 (100)
T 2ebt_A           11 EKRRIHYCDYPGC-----TKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF   85 (100)
T ss_dssp             CSCCCEECCSSSC-----CCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBC
T ss_pred             ccCcceEcCCCCC-----CCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCcc
Confidence            3678899997222     99999999999999999999999996  699999999999999999 889999999 99999


Q ss_pred             CChhHHHHHHHHhh
Q 048287          173 SRRDSFITHRAFCD  186 (365)
Q Consensus       173 ~~~~~L~~H~~~h~  186 (365)
                      .....|..|+++|.
T Consensus        86 ~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           86 SRSDHLALHMKRHQ   99 (100)
T ss_dssp             SSHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHhC
Confidence            99999999999985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=1.5e-16  Score=122.19  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=76.5

Q ss_pred             CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcc
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKW  137 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~  137 (365)
                      +++|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            479999999999999999999999997             8899999999       9999999999999999985 899


Q ss_pred             ccccccccccchhhhhhhhcc
Q 048287          138 KCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       138 ~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      .|..|++.|.....|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.59  E-value=1.5e-15  Score=113.71  Aligned_cols=72  Identities=21%  Similarity=0.502  Sum_probs=65.1

Q ss_pred             CCCCceeccc--ccccccChHhHHHHHH-hcCCCcccccccccccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhh
Q 048287           56 MATNRFLCEI--CGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCR  130 (365)
Q Consensus        56 ~~~k~~~C~~--Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~  130 (365)
                      +++++|.|..  |++.|.+...|..|++ .|.             ++++|.|++  |       ++.|.....|..|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            4578899987  9999999999999998 686             789999998  8       9999999999999999


Q ss_pred             hcCCCcccccccccccc
Q 048287          131 KHGEKKWKCEKCSKRYA  147 (365)
Q Consensus       131 H~~ekp~~C~~C~k~F~  147 (365)
                      |+++++|+|++|++.|.
T Consensus        63 H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHTSCCCSCCSSSCCCC
T ss_pred             hCCCCCeeCCCCCCCCC
Confidence            99999999999999883

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.58  E-value=1.5e-15  Score=116.22  Aligned_cols=81  Identities=25%  Similarity=0.553  Sum_probs=76.2

Q ss_pred             CCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCccccc--cccccccchhhhhhhhcc-cCCcceecc-CCCc
Q 048287           98 RKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE--KCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTV  171 (365)
Q Consensus        98 ~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~--~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~  171 (365)
                      +.++|.|++  |       ++.|.....|..|+++|.++++|.|.  .|++.|.....|..|+++ +++++|.|. |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            357899999  7       99999999999999999999999997  699999999999999999 889999999 9999


Q ss_pred             cCChhHHHHHHHHh
Q 048287          172 FSRRDSFITHRAFC  185 (365)
Q Consensus       172 F~~~~~L~~H~~~h  185 (365)
                      |.....|..|++.|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999887

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.57  E-value=1.5e-15  Score=108.62  Aligned_cols=57  Identities=23%  Similarity=0.447  Sum_probs=50.9

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcccCCc
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTR  162 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~k  162 (365)
                      +|||.|++|       ++.|.....|..|+++|++++||+|.+|++.|.....|..|+++|.++
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            689999998       999999999999999999999999999999999999999999885444

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.55  E-value=2.4e-16  Score=129.66  Aligned_cols=121  Identities=15%  Similarity=0.241  Sum_probs=86.7

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      ..+.+.++|.|..++...  ...+..|++.+..          ...++.+.|++|.- .-.+.+.|.....|..|+ +|+
T Consensus         5 ~~~~~~k~~~~~~k~~~~--~~s~ee~~~~~~l----------~~~~~~~~c~~~~~-~~~~~~~~~~~~~l~~h~-~h~   70 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFI--HVTLEELKRYHQL----------TPEQKRLIRAIVKT-LIHNPQLLDESSYLYRLL-ASK   70 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEE--ECCHHHHHHHTTS----------CHHHHHHHHHHHHH-HHHCGGGTTTHHHHHHHH-HHH
T ss_pred             hhcccccccccccCCeee--eecHHhhhccccC----------ChhhCcccchhhhc-ccCCCcccCCHHHHHHHH-HhC
Confidence            356677888887654332  2344555544431          11456677777610 000023445667777777 688


Q ss_pred             CCCccccccccccccchhhhhhhhcccCCcceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          133 GEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       133 ~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      +++||+|++|++.|.....|..|+++| +++|.|+ |++.|.+...|..|++.|++.
T Consensus        71 ~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           71 AISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            899999999999999999999999988 8999999 999999999999999998864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=5.7e-15  Score=110.31  Aligned_cols=68  Identities=25%  Similarity=0.439  Sum_probs=60.8

Q ss_pred             ccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhh
Q 048287           52 PKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus        52 ~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      ...+.++++|.|++|++.|.....|.+|++.|.             ++++|.|++|       ++.|.....|..|+++|
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~H   69 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRVH   69 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGGS
T ss_pred             cCcCCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHHh
Confidence            345567789999999999999999999999997             7889999998       99999999999999999


Q ss_pred             cCCCcccc
Q 048287          132 HGEKKWKC  139 (365)
Q Consensus       132 ~~ekp~~C  139 (365)
                      ++++||+|
T Consensus        70 ~~~~p~~C   77 (77)
T 2cot_A           70 TGSGPSSG   77 (77)
T ss_dssp             CCCCCCCC
T ss_pred             CCCCCCCC
Confidence            99999988

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.53  E-value=7.2e-15  Score=111.06  Aligned_cols=76  Identities=26%  Similarity=0.563  Sum_probs=65.4

Q ss_pred             ceec--ccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           60 RFLC--EICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        60 ~~~C--~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +|.|  ++|++.|.....|..|++.|.             ++++|.|++  |       ++.|.....|..|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            5888  889999999999999988887             788889987  7       8899988899999988887  


Q ss_pred             cccccc---ccccccchhhhhhhhcc
Q 048287          136 KWKCEK---CSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       136 p~~C~~---C~k~F~~~~~L~~H~~~  158 (365)
                       |.|..   |++.|.....|..|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             88888   88888888888888776

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=6.2e-15  Score=111.94  Aligned_cols=77  Identities=19%  Similarity=0.411  Sum_probs=68.7

Q ss_pred             HHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC----Cccccccccccccchhh
Q 048287           76 LQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE----KKWKCEKCSKRYAVQSD  151 (365)
Q Consensus        76 L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e----kp~~C~~C~k~F~~~~~  151 (365)
                      |.+|+++|.             ++++|.|++|       ++.|.....|..|+++|+.+    ++|+|.+|++.|.....
T Consensus         3 ~~~H~~~H~-------------~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~   62 (86)
T 1x6h_A            3 SGSSGRTHT-------------GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT   62 (86)
T ss_dssp             TTCCSTTCC-------------CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHH
T ss_pred             cccccceec-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHH
Confidence            456777776             8899999998       99999999999999888765    78999999999999999


Q ss_pred             hhhhhcc-cCCcceecc-CCCcc
Q 048287          152 WKAHSKT-CGTREYKCD-CGTVF  172 (365)
Q Consensus       152 L~~H~~~-~~~kpy~C~-Cgk~F  172 (365)
                      |..|+++ +++++|.|. |+..|
T Consensus        63 L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           63 MARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHHccCCCCcccCCCCCCC
Confidence            9999999 888999999 98876

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=8.1e-15  Score=115.08  Aligned_cols=80  Identities=13%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             CCchhhhhcCccccCCCCceeccccccccc-ChHhHHHHHHhcCCCcccccccccccC-CceeeCCCCCccCCCCCCccC
Q 048287           42 DPEAEVIALSPKTLMATNRFLCEICGKGFQ-RDQNLQLHRRGHNLPWKLKQRTSKEVR-KRVYVCPEKTCVHHHPSRALG  119 (365)
Q Consensus        42 ~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~-~~~~L~~H~~~H~~~~~~~~~~~~~~~-~k~~~C~~C~C~~~~~~~~f~  119 (365)
                      +.....+..|+++|.++++|.|++|++.|. ....|.+|+++|.             + +++|.|++|       ++.|.
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~-------------~~~~~~~C~~C-------~k~F~   65 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ-------------KLQDALKCQHC-------RKQFK   65 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH-------------HHHHHHSCSSS-------CCCCS
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc-------------CCCCCEECCCC-------CCccC
Confidence            344456677888888899999999999999 8999999998886             6 788999988       89999


Q ss_pred             ChhHHHHHHhhhcCCCcccccc
Q 048287          120 DLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus       120 ~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ....|+.|+++|++++|+....
T Consensus        66 ~~~~L~~H~~~h~~~kp~~~~~   87 (98)
T 2gqj_A           66 SKAGLNYHTMAEHSAKPSDAEA   87 (98)
T ss_dssp             CHHHHHHHHHHHSCSCSSCCCC
T ss_pred             CHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999888865443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=1.9e-14  Score=114.08  Aligned_cols=74  Identities=18%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             ccCCCCceecccccccccChHhHHHHHH-hcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHH-Hhhh
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKH-FCRK  131 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H-~~~H  131 (365)
                      ...++++|.|++|++.|..+..|.+|++ .|.+          ..++++|.|++|       ++.|.....|..| +++|
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~----------~~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN----------VVLNSSYVCVEC-------NFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSS----------CCCSCCEEETTT-------TEEESSTHHHHTHHHHTS
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCC----------CCCCCCcCCCCC-------CcccCCHHHHHHHHHHhc
Confidence            3467899999999999999999999997 5831          016789999998       9999999999999 7999


Q ss_pred             cCCCccccccccc
Q 048287          132 HGEKKWKCEKCSK  144 (365)
Q Consensus       132 ~~ekp~~C~~C~k  144 (365)
                      ++++||+|.++.+
T Consensus        75 tgekpy~C~~~~~   87 (102)
T 2ghf_A           75 PGEENFKLTMVKR   87 (102)
T ss_dssp             TTCCCEEEEECCC
T ss_pred             CCCCCeeCCcccC
Confidence            9999999988543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=2.9e-14  Score=106.57  Aligned_cols=72  Identities=22%  Similarity=0.463  Sum_probs=65.7

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHh-hhcCCCcccccc--ccccccchhhhhhhhcc-cCCcceecc-CCCc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RKHGEKKWKCEK--CSKRYAVQSDWKAHSKT-CGTREYKCD-CGTV  171 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~  171 (365)
                      .++++|.|..-.|     ++.|.....|..|++ .|.++++|+|.+  |++.|.....|..|+++ +++++|.|+ |++.
T Consensus         3 ~~~~~~~C~~~~C-----~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~   77 (79)
T 2dlk_A            3 SGSSGMPCDFPGC-----GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS   77 (79)
T ss_dssp             SCCSSEECSSTTT-----CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred             CCCCCccCCCCCC-----cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence            3678999987222     999999999999999 799999999999  99999999999999999 889999999 9999


Q ss_pred             cC
Q 048287          172 FS  173 (365)
Q Consensus       172 F~  173 (365)
                      |.
T Consensus        78 F~   79 (79)
T 2dlk_A           78 SG   79 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=4.7e-14  Score=104.41  Aligned_cols=64  Identities=22%  Similarity=0.426  Sum_probs=57.1

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      .+.++++|+|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHHCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhcCC
Confidence            4566788999999999999999999999997             7889999998       9999999999999999999


Q ss_pred             CCcc
Q 048287          134 EKKW  137 (365)
Q Consensus       134 ekp~  137 (365)
                      ++||
T Consensus        71 ~kp~   74 (74)
T 2lce_A           71 EKPY   74 (74)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9886

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.45  E-value=7.2e-14  Score=105.49  Aligned_cols=77  Identities=27%  Similarity=0.576  Sum_probs=71.0

Q ss_pred             eeeC--CCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc--ccccccchhhhhhhhcccCCcceecc----CCCcc
Q 048287          101 VYVC--PEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK--CSKRYAVQSDWKAHSKTCGTREYKCD----CGTVF  172 (365)
Q Consensus       101 ~~~C--~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~~~~kpy~C~----Cgk~F  172 (365)
                      ||.|  +.|       ++.|.....|..|+++|.++++|+|+.  |++.|.....|..|+++|..  |.|.    |++.|
T Consensus         1 p~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~C~~~~~C~~~f   71 (85)
T 2j7j_A            1 MYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDSCSFVG   71 (85)
T ss_dssp             CEECCSTTC-------CCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--EECCSCSSCCCEE
T ss_pred             CccCCCCCC-------CcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--CCCCCCCCCCCcc
Confidence            5889  777       999999999999999999999999988  99999999999999999433  9994    99999


Q ss_pred             CChhHHHHHHHHhh
Q 048287          173 SRRDSFITHRAFCD  186 (365)
Q Consensus       173 ~~~~~L~~H~~~h~  186 (365)
                      .....|..|++.|+
T Consensus        72 ~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           72 KTWTLYLKHVAECH   85 (85)
T ss_dssp             SSHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHhcC
Confidence            99999999999875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.3e-13  Score=100.84  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=56.3

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      ++.++++|+|++|++.|.....|.+|++.|.             ++++|.|++|       ++.|.....|..|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhC
Confidence            4677889999999999999999999999887             7888999998       9999999999999999998


Q ss_pred             CCcc
Q 048287          134 EKKW  137 (365)
Q Consensus       134 ekp~  137 (365)
                      ++|.
T Consensus        63 ~~p~   66 (70)
T 1x5w_A           63 DMSG   66 (70)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            8764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.4e-13  Score=101.29  Aligned_cols=65  Identities=26%  Similarity=0.432  Sum_probs=58.7

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhh
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCR  130 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~  130 (365)
                      +.++|.++++|.|++|++.|.....|.+|++.|.             ++++|.|++|       ++.|.....|..|+++
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------GEKPYKCLEC-------GKAFSQNSGLINHQRI   64 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------CSCCEECSSS-------CCEESSHHHHHHHHHH
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------CCCCeECCCC-------CcccCCHHHHHHHHHh
Confidence            5678889999999999999999999999999997             7899999998       9999999999999999


Q ss_pred             hcCCC
Q 048287          131 KHGEK  135 (365)
Q Consensus       131 H~~ek  135 (365)
                      |+++.
T Consensus        65 H~~~~   69 (72)
T 1x6e_A           65 HTSGP   69 (72)
T ss_dssp             HHSSS
T ss_pred             cCCCC
Confidence            98764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=7.9e-14  Score=109.27  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=61.0

Q ss_pred             ccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcc-CChhHHHHHHhhhcCCCccccccccccc
Q 048287           68 KGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRAL-GDLTGIKKHFCRKHGEKKWKCEKCSKRY  146 (365)
Q Consensus        68 k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f-~~~~~L~~H~~~H~~ekp~~C~~C~k~F  146 (365)
                      ..|.....|..|++.|.             ++++|.|++|       ++.| .....|+.|+++| ++++|+|.+|+|.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            45667777888888776             7788888888       8888 8888888888888 88888888888888


Q ss_pred             cchhhhhhh-hcccCCcce
Q 048287          147 AVQSDWKAH-SKTCGTREY  164 (365)
Q Consensus       147 ~~~~~L~~H-~~~~~~kpy  164 (365)
                      ..+..|..| +++|.++||
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            888888888 666666665

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=8.8e-14  Score=103.76  Aligned_cols=64  Identities=25%  Similarity=0.532  Sum_probs=60.6

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceec
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC  166 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C  166 (365)
                      +.++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ ++++||.|
T Consensus        13 ~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           13 QRERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             CCCSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCCC
T ss_pred             CCCCCCEECCCC-------CcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            447899999999       99999999999999999999999999999999999999999999 88999998

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.8e-14  Score=111.98  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             ccCChhHHHHHHhhhcCCCcccccccccccc-chhhhhhhhcc-cC-Ccceecc-CCCccCChhHHHHHHHHhhh
Q 048287          117 ALGDLTGIKKHFCRKHGEKKWKCEKCSKRYA-VQSDWKAHSKT-CG-TREYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       117 ~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~-~~~~L~~H~~~-~~-~kpy~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      .+.....+..|+++|.++++|+|.+|++.|. ....|..|+++ ++ +++|.|+ |++.|.++..|..|++.|++
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~   79 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS   79 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcC
Confidence            4444555566677777777777777777777 77777777766 44 6677777 77777777777777766664

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=3.5e-13  Score=100.47  Aligned_cols=68  Identities=18%  Similarity=0.393  Sum_probs=59.5

Q ss_pred             hhhcCccccCCCCceecccccccccChHhHHHHHH-hcCCCcccccccccccCC-ceeeCCCCCccCCCCCCccCChhHH
Q 048287           47 VIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRK-RVYVCPEKTCVHHHPSRALGDLTGI  124 (365)
Q Consensus        47 ~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~-k~~~C~~C~C~~~~~~~~f~~~~~L  124 (365)
                      .+..|+++|+++++|.|++|++.|.+...|.+|++ .|.             .+ ++|.|++|       ++.|.....|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~-------------~~~~~~~C~~C-------~~~f~~~~~L   61 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT-------------ENVAKFHCPHC-------DTVIARKSDL   61 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS-------------SSCSSEECSSS-------SCEESSHHHH
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC-------------CCCCccCCCCC-------CCccCCHHHH
Confidence            35689999999999999999999999999999997 565             43 79999998       9999999999


Q ss_pred             HHHHhhhcCC
Q 048287          125 KKHFCRKHGE  134 (365)
Q Consensus       125 ~~H~~~H~~e  134 (365)
                      ..|+++|++.
T Consensus        62 ~~H~~~~H~~   71 (77)
T 2ct1_A           62 GVHLRKQHSY   71 (77)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHhCCC
Confidence            9999986653

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=3.3e-13  Score=105.72  Aligned_cols=79  Identities=13%  Similarity=0.212  Sum_probs=69.3

Q ss_pred             CCCCchhhhhcCccccCCCCceecccccccc-cChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCcc
Q 048287           40 TPDPEAEVIALSPKTLMATNRFLCEICGKGF-QRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRAL  118 (365)
Q Consensus        40 ~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F-~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f  118 (365)
                      ..+.....+..|.+++.++++|.|++|++.| .....|..|+++|              ++++|.|.+|       ++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h--------------~~k~~~C~~C-------gk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--------------KQEMFTCHHC-------GKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH--------------CCCCCCCSSS-------CCCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH--------------CCCCeECCCC-------CCee
Confidence            3456677888899999999999999999999 9999999999998              5789999999       9999


Q ss_pred             CChhHHHHH-HhhhcCCCcccc
Q 048287          119 GDLTGIKKH-FCRKHGEKKWKC  139 (365)
Q Consensus       119 ~~~~~L~~H-~~~H~~ekp~~C  139 (365)
                      .....|+.| +++|+++..|.+
T Consensus        73 ~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCHHHHHHHhHHhcCCCCCCCC
Confidence            999999999 889986554443

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.38  E-value=3.1e-14  Score=116.84  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=84.0

Q ss_pred             CCCcCCCCCCCCCCC--CCchhhhhcCccccCCCCceeccccccccc------ChHhHHHHHHhcCCCcccccccccccC
Q 048287           27 PNTAAKKKRNLPGTP--DPEAEVIALSPKTLMATNRFLCEICGKGFQ------RDQNLQLHRRGHNLPWKLKQRTSKEVR   98 (365)
Q Consensus        27 ~~~~~~~~c~~c~~~--~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~------~~~~L~~H~~~H~~~~~~~~~~~~~~~   98 (365)
                      .+..++|.|...+..  |...+.+..+. .....+.+.|++|++.|.      ....|..|+ .|+             +
T Consensus         7 ~~~~k~~~~~~k~~~~~~s~ee~~~~~~-l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~   71 (129)
T 2wbt_A            7 DSGSKKYLSNHKGIFIHVTLEELKRYHQ-LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------A   71 (129)
T ss_dssp             CTTCCGGGGCSSCEEEECCHHHHHHHTT-SCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------H
T ss_pred             cccccccccccCCeeeeecHHhhhcccc-CChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------C
Confidence            344567777655432  22222222222 223357789999988776      566677777 465             7


Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT  161 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  161 (365)
                      +++|.|++|       ++.|.....|..|+++|  ++||+|++|++.|.....|..|+++ ++.
T Consensus        72 ~~~~~C~~C-------~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLC-------LMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTT-------CCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCC-------CcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            899999999       99999999999999999  8999999999999999999999998 543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=1.6e-13  Score=98.97  Aligned_cols=59  Identities=29%  Similarity=0.615  Sum_probs=43.5

Q ss_pred             hhhcCCCccccccccccccchhhhhhhhcc-c--CCcceecc-CCCccCChhHHHHHHHHhhh
Q 048287          129 CRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-C--GTREYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       129 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~--~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      ++|.++++|+|+.|++.|.....|..|++. |  ++++|.|+ |++.|.+...|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            456777777777777777777777777776 5  56777777 77777777777777777765

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=6.6e-14  Score=104.44  Aligned_cols=65  Identities=22%  Similarity=0.400  Sum_probs=54.6

Q ss_pred             HHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCC--cceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          124 IKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT--REYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       124 L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~--kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      |..|+++|+++++|+|++|++.|.....|..|++. |.+  ++|.|+ |++.|.+...|..|++.+|..
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            34688889999999999999999999999999874 543  789999 999999999999999887753

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=3.8e-13  Score=106.59  Aligned_cols=66  Identities=17%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHh-hh---cCCCccccccccccccchhhhhhh-hcc-cCCcceecc-CC
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RK---HGEKKWKCEKCSKRYAVQSDWKAH-SKT-CGTREYKCD-CG  169 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H---~~ekp~~C~~C~k~F~~~~~L~~H-~~~-~~~kpy~C~-Cg  169 (365)
                      .++++|.|++|       ++.|..+..|..|++ +|   .+++||+|++|++.|.....|..| +++ .+++||.|. +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            48899999999       999999999999998 58   568999999999999999999999 788 789999998 54

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.36  E-value=7.3e-13  Score=101.39  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=52.7

Q ss_pred             ccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHH-hh
Q 048287           52 PKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHF-CR  130 (365)
Q Consensus        52 ~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~  130 (365)
                      ...+...++|.|++||+.|.++..|.+|+++|+             ++++|.|++|       ++.|.....|..|+ ++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~   79 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLH-------------AAQVFPCKYC-------PATFYSSPGLTRHINKC   79 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTS-------------CSSSEECTTS-------SCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhcc-------------CCCccCCCCC-------CCEeCCHHHHHHhCccc
Confidence            345566788899999999999999999998887             7888999888       88999999999996 56


Q ss_pred             hcCCC
Q 048287          131 KHGEK  135 (365)
Q Consensus       131 H~~ek  135 (365)
                      |.+|.
T Consensus        80 H~~E~   84 (85)
T 2lv2_A           80 HPSEN   84 (85)
T ss_dssp             CTTCC
T ss_pred             CcCCC
Confidence            77664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.36  E-value=2.4e-13  Score=100.10  Aligned_cols=59  Identities=31%  Similarity=0.663  Sum_probs=39.3

Q ss_pred             hhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHHhhh
Q 048287          129 CRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       129 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      ++|.++++|+|++|++.|.....|..|+++ +++++|.|. |++.|.+...|..|++.|++
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            456666666666666666666666666666 556666666 77777777777777666653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.35  E-value=5.2e-13  Score=98.70  Aligned_cols=62  Identities=19%  Similarity=0.489  Sum_probs=53.2

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcce
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  164 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy  164 (365)
                      +.++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ ++++||
T Consensus        12 ~~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           12 THSDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             cCCCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            447788999888       88999999999999999888889999999999988899889888 677776

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=9.3e-13  Score=96.25  Aligned_cols=61  Identities=20%  Similarity=0.254  Sum_probs=42.9

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTRE  163 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kp  163 (365)
                      +.++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ +++++
T Consensus         4 ~~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            346677777776       77777777777777777777777777777777777777777766 55554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.31  E-value=1.4e-12  Score=93.92  Aligned_cols=62  Identities=19%  Similarity=0.343  Sum_probs=46.3

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHh-cCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhh
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRG-HNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      ++|.++++|.|++|++.|.....|..|++. |.            .++++|.|++|       ++.|.....|..|+++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~------------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK------------RNVKVYPCPFC-------FKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS------------SSCCCEECTTT-------CCEESCHHHHHHHHHHH
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC------------CCCcCeECCCC-------CCccCCHHHHHHHHHHH
Confidence            456777788888888888888888888776 51            15677888777       77888888888887777


Q ss_pred             cC
Q 048287          132 HG  133 (365)
Q Consensus       132 ~~  133 (365)
                      ++
T Consensus        64 H~   65 (66)
T 2drp_A           64 HK   65 (66)
T ss_dssp             TC
T ss_pred             cC
Confidence            65

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.30  E-value=2.2e-12  Score=90.00  Aligned_cols=56  Identities=27%  Similarity=0.487  Sum_probs=46.6

Q ss_pred             ceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            5788888888888888888888887             7788888887       888888888888888888765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=90.86  Aligned_cols=55  Identities=29%  Similarity=0.516  Sum_probs=34.9

Q ss_pred             CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      +++|.|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHT-------------GEKPYKCEFC-------EYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHH-------------CCCCEECSSS-------SCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcC-------------CCCCcCCCCC-------cchhCCHHHHHHHHHHhc
Confidence            456666666666666666666666665             5666666666       666666666666666665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.2e-12  Score=96.23  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHH-hhhc
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHF-CRKH  132 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~H~  132 (365)
                      +|+++++|+|++|++.|.....|.+|++.|...          ..+++|.|++|       ++.|.....|..|+ +.|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~----------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET----------VAALRFPCEFC-------GKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH----------TTTCCEECTTT-------CCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc----------CCCcccCCCCC-------CchhCCHHHHHHHHHHhCC
Confidence            367788888888888888888888888888500          02678888887       88888888888888 4555


Q ss_pred             CCCcccc
Q 048287          133 GEKKWKC  139 (365)
Q Consensus       133 ~ekp~~C  139 (365)
                      ++++...
T Consensus        64 ~~~~~~~   70 (78)
T 2d9h_A           64 ALLLAPQ   70 (78)
T ss_dssp             TTSSCCS
T ss_pred             CCCCCcc
Confidence            6655443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=91.35  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      +++|.|++|       ++.|.....|..|+++|+++++|+|..|++.|.....|..|+++
T Consensus         2 ~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            2 SSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ---CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            455666665       66666666666666666665556665555555555555555554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.29  E-value=2.2e-12  Score=98.71  Aligned_cols=56  Identities=13%  Similarity=0.344  Sum_probs=43.9

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      +...++|.|++|       ++.|.....|..|+++|++++||+|++|++.|.++..|..|++.
T Consensus        23 ~~~~~~h~C~~C-------gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           23 SASAECHLCPVC-------GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             CCCCTTEECTTS-------CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCCEECCCC-------CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            345677888887       88888888888888888888888888888888888888888654

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=2.9e-14  Score=104.60  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             CCccccccccccccchhhhhhhhcc-cCCcceecc
Q 048287          134 EKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD  167 (365)
Q Consensus       134 ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~  167 (365)
                      +++|+|..|++.|.....|..|+++ +++++|.|+
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~   71 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPS   71 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCC
Confidence            4455555555555555555555555 445555554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5.2e-12  Score=97.59  Aligned_cols=62  Identities=18%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             CceecccccccccChHhHHHHHHh-cCCCcccccccccccCCce--------eeCCCCCccCCCCCCccCChhHHHHHHh
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRG-HNLPWKLKQRTSKEVRKRV--------YVCPEKTCVHHHPSRALGDLTGIKKHFC  129 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~-H~~~~~~~~~~~~~~~~k~--------~~C~~C~C~~~~~~~~f~~~~~L~~H~~  129 (365)
                      ..|.|++|++.|.....|.+|++. |.             ++++        |.|++|       ++.|.....|..|++
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHH
T ss_pred             CCCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHH
Confidence            457899999999999999999998 76             5555        889988       999999999999999


Q ss_pred             hhcCCCccccc
Q 048287          130 RKHGEKKWKCE  140 (365)
Q Consensus       130 ~H~~ekp~~C~  140 (365)
                      +|++++||+|+
T Consensus        84 ~H~~~k~~~C~   94 (95)
T 2ej4_A           84 VHTGEKSGPSS   94 (95)
T ss_dssp             HHHTCCCCSSC
T ss_pred             hcCCCCCCCCC
Confidence            99999999996

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.2e-13  Score=101.21  Aligned_cols=63  Identities=14%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             hhHHHHHHhhhcCCCccccccccccccchhhhhhhhcccCCcceecc-CCCccCChhHHHHHHHHhhhhh
Q 048287          121 LTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD-CGTVFSRRDSFITHRAFCDALA  189 (365)
Q Consensus       121 ~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~~  189 (365)
                      ...|..|+++|.++++|.|.+|++.|.....|..      +++|.|+ |++.|.+...|..|++.|.+..
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~   66 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDEGNESGKK   66 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHHHhhcCCC
Confidence            3457789999999999999999999999999876      7899999 9999999999999999987643

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=1.2e-11  Score=87.27  Aligned_cols=56  Identities=29%  Similarity=0.593  Sum_probs=40.2

Q ss_pred             CceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHH-hhhcCC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHF-CRKHGE  134 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~H~~e  134 (365)
                      ++|.|++|++.|.....|.+|++.|.             ++++|.|++|       ++.|.....|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCCc
Confidence            46777777777777777777777776             6677777777       77777777777775 456543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=92.19  Aligned_cols=56  Identities=23%  Similarity=0.549  Sum_probs=32.0

Q ss_pred             hcCCCccccccccccccchhhhhhhhcc-cC---Ccceecc-CCCccCChhHHHHHHHHhh
Q 048287          131 KHGEKKWKCEKCSKRYAVQSDWKAHSKT-CG---TREYKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       131 H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~---~kpy~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      |+++++|+|.+|++.|.....|..|+++ ++   +++|.|+ |++.|.+...|..|++.+|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   62 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH   62 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTS
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhC
Confidence            4455555555555555555555555555 22   5566666 6666666666666665444

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.18  E-value=1.7e-11  Score=85.44  Aligned_cols=54  Identities=19%  Similarity=0.421  Sum_probs=43.3

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCC
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGT  161 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~  161 (365)
                      ||.|++|       ++.|.....|..|+++|+++++|+|+.|++.|.....|..|+++ +++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            4778877       88888888888888888888888888888888888888888877 443

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.15  E-value=2.8e-11  Score=85.30  Aligned_cols=51  Identities=24%  Similarity=0.550  Sum_probs=39.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSK  157 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~  157 (365)
                      ++|.|++|       ++.|.....|..|+++|+++++|+|..|++.|.....|..|++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHH
Confidence            46777777       7888888888888888887778888888888877777777764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.14  E-value=3.9e-11  Score=88.07  Aligned_cols=58  Identities=19%  Similarity=0.406  Sum_probs=40.0

Q ss_pred             ccCCCCceecc--cccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhh
Q 048287           54 TLMATNRFLCE--ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus        54 ~~~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      .+.++++|.|+  .|++.|.....|.+|++.|.             ++++|.|++|       ++.|.....|..|+++|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHTTC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------CCCCeECCCC-------CchhCCHHHHHHHHHhc
Confidence            45566677775  47777777777777777765             6667777776       77777777777777665

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.2e-11  Score=79.70  Aligned_cols=45  Identities=24%  Similarity=0.325  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=4.2e-11  Score=86.43  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             CCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC-CCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           57 ATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP-EKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        57 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~-~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++++|.|++|++.|. ...|..|+++ .             ++++|.|+ +|       ++.|..+..|..|+++|...+
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C-------~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQC-------GVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCC-------SCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCccc-------CcccccHHHHHHHHHhhcccC
Confidence            345566666666666 6666666555 4             55566666 55       566666666666665555443

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=4.4e-11  Score=79.67  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=4.7e-11  Score=79.52  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      +|+++|+++++|+|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS-------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=3.2e-11  Score=93.07  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             cCCCCCCCCCCCCCchhhhhcCccc-cCCCCc--------eecccccccccChHhHHHHHHhcCCCcccccccccccCCc
Q 048287           30 AAKKKRNLPGTPDPEAEVIALSPKT-LMATNR--------FLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKR  100 (365)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~k~-~~~~k~--------~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k  100 (365)
                      ..+++|..|++.|.....|..|+++ |.++++        |.|++|++.|.....|.+|+++|+             +++
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k   89 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------GEK   89 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH-------------TCC
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC-------------CCC
Confidence            4678999999999999999999998 888887        999999999999999999999998             899


Q ss_pred             eeeCCC
Q 048287          101 VYVCPE  106 (365)
Q Consensus       101 ~~~C~~  106 (365)
                      +|.|+.
T Consensus        90 ~~~C~~   95 (95)
T 2ej4_A           90 SGPSSG   95 (95)
T ss_dssp             CCSSCC
T ss_pred             CCCCCC
Confidence            999963

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.11  E-value=4.5e-11  Score=79.54  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.11  E-value=4.5e-11  Score=79.63  Aligned_cols=45  Identities=20%  Similarity=0.294  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS-------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCcCCCCC
Confidence            68899999999999999999999999999999998             8999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.11  E-value=4.8e-11  Score=79.57  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      +|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS-------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8899999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.3e-11  Score=79.28  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.2e-11  Score=79.24  Aligned_cols=45  Identities=22%  Similarity=0.317  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5e-11  Score=79.37  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS-------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8899999986

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5e-11  Score=79.47  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS-------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.6e-11  Score=79.50  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.7e-11  Score=79.04  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|.|++|++.|.+...|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8899999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.4e-11  Score=79.14  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      +|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT-------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS-------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.1e-11  Score=79.28  Aligned_cols=45  Identities=22%  Similarity=0.287  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8899999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.2e-11  Score=79.32  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.1e-11  Score=79.42  Aligned_cols=45  Identities=24%  Similarity=0.369  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS-------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.4e-11  Score=79.22  Aligned_cols=45  Identities=24%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.++..|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT-------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT-------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.2e-11  Score=79.29  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.3e-11  Score=79.28  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC-------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=5.5e-11  Score=79.20  Aligned_cols=45  Identities=27%  Similarity=0.388  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT-------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.10  E-value=5e-11  Score=79.39  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG-------------CCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=6.2e-11  Score=78.84  Aligned_cols=45  Identities=22%  Similarity=0.361  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8899999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.8e-11  Score=78.30  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=41.7

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      |+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            6789999999999999999999999999999998             8899999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=4.4e-11  Score=79.65  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999997             8899999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.10  E-value=5.5e-11  Score=87.26  Aligned_cols=56  Identities=21%  Similarity=0.531  Sum_probs=42.2

Q ss_pred             cCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhccc
Q 048287           97 VRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus        97 ~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      .++++|.|++  |       ++.|.....|..|+++|.++++|+|.+|++.|.....|..|+++|
T Consensus        15 ~~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           15 PKMRPYACPVESC-------DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCEECSSTTB-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCCccCCcCCCC-------CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            4677777763  5       777887777888877777777777777777777777777777653

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.09  E-value=5.5e-11  Score=79.27  Aligned_cols=45  Identities=27%  Similarity=0.422  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.4e-11  Score=78.93  Aligned_cols=45  Identities=29%  Similarity=0.470  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.++..|.+|+++|.             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=6.3e-11  Score=78.89  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT-------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.1e-11  Score=78.97  Aligned_cols=45  Identities=27%  Similarity=0.326  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT-------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=4.8e-11  Score=79.54  Aligned_cols=45  Identities=24%  Similarity=0.336  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH-------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999997             8899999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.4e-11  Score=78.84  Aligned_cols=45  Identities=29%  Similarity=0.395  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT-------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT-------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.3e-11  Score=78.88  Aligned_cols=45  Identities=27%  Similarity=0.406  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.2e-11  Score=79.32  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH-------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.09  E-value=6.8e-11  Score=78.66  Aligned_cols=45  Identities=22%  Similarity=0.317  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT-------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=6.5e-11  Score=78.90  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47899999999999999999999999999999998             8899999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.9e-11  Score=78.69  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      +|+++|+++++|.|++|++.|.++..|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            68899999999999999999999999999999998             8899999875

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=5.8e-11  Score=78.99  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=4.8e-11  Score=79.48  Aligned_cols=45  Identities=24%  Similarity=0.360  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=6.8e-11  Score=78.66  Aligned_cols=45  Identities=22%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|..|+++|.             ++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM-------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC-------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.9e-11  Score=78.69  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|..|+++|.             ++++|.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.7e-11  Score=78.77  Aligned_cols=45  Identities=27%  Similarity=0.460  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.08  E-value=8.5e-11  Score=78.31  Aligned_cols=45  Identities=24%  Similarity=0.359  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            57899999999999999999999999999999998             8899999987

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=8.9e-11  Score=78.14  Aligned_cols=45  Identities=27%  Similarity=0.405  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|++.|.             ++++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8899999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.07  E-value=5.5e-11  Score=79.20  Aligned_cols=45  Identities=22%  Similarity=0.348  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS-------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=9.7e-11  Score=77.96  Aligned_cols=45  Identities=18%  Similarity=0.116  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=7.7e-11  Score=78.59  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=42.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT-------------GQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH-------------SCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8899999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=8.5e-11  Score=78.32  Aligned_cols=45  Identities=24%  Similarity=0.462  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8899999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=2.6e-10  Score=83.41  Aligned_cols=58  Identities=19%  Similarity=0.434  Sum_probs=40.1

Q ss_pred             ccCCCCceeccc--ccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC--CCccCCCCCCccCChhHHHHHHh
Q 048287           54 TLMATNRFLCEI--CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFC  129 (365)
Q Consensus        54 ~~~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~  129 (365)
                      .....++|.|.+  |++.|.....|.+|++.|.             ++++|.|++  |       ++.|.....|..|++
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-------ERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-------CCEESSHHHHHHHTT
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------CcccCCHHHHHhHhh
Confidence            344556777766  7777777777777777776             667777754  5       777777777777766


Q ss_pred             hh
Q 048287          130 RK  131 (365)
Q Consensus       130 ~H  131 (365)
                      +|
T Consensus        71 ~H   72 (72)
T 2epa_A           71 TH   72 (72)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.4e-10  Score=83.64  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=51.7

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc-cccccccchhhhhhhhcc-cCCc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE-KCSKRYAVQSDWKAHSKT-CGTR  162 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~-~C~k~F~~~~~L~~H~~~-~~~k  162 (365)
                      -++++|.|++|       ++.|. ...|..|+++ ++++||+|+ .|++.|..+..|..|+++ ...+
T Consensus         6 C~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            6 SGKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            47889999999       99999 9999999999 999999999 999999999999999998 4444

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.6e-10  Score=76.91  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=42.2

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.6e-10  Score=77.09  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHH-hcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|+++|.++++|.|++|++.|.+...|.+|++ +|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999 997             8899999987

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.3e-10  Score=76.11  Aligned_cols=44  Identities=20%  Similarity=0.393  Sum_probs=41.4

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      ++++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5778999999999999999999999999999998             8899999987

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.6e-10  Score=75.89  Aligned_cols=44  Identities=25%  Similarity=0.415  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.99  E-value=2.6e-10  Score=75.89  Aligned_cols=44  Identities=25%  Similarity=0.353  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.7e-10  Score=75.75  Aligned_cols=44  Identities=23%  Similarity=0.332  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT-------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=2.8e-10  Score=75.73  Aligned_cols=44  Identities=25%  Similarity=0.391  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            48899999999999999999999999999999998             899999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.8e-10  Score=75.56  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      +|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT-------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS-------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            68899999999999999999999999999999998             889999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.9e-10  Score=75.60  Aligned_cols=44  Identities=18%  Similarity=0.382  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=3.1e-10  Score=75.38  Aligned_cols=44  Identities=25%  Similarity=0.378  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=2.8e-10  Score=75.56  Aligned_cols=44  Identities=20%  Similarity=0.390  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.98  E-value=4.2e-10  Score=82.25  Aligned_cols=56  Identities=25%  Similarity=0.493  Sum_probs=49.5

Q ss_pred             ccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCcccccc--ccccccchhhhhhhhcc
Q 048287           96 EVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK--CSKRYAVQSDWKAHSKT  158 (365)
Q Consensus        96 ~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~--C~k~F~~~~~L~~H~~~  158 (365)
                      ....++|.|.+  |       ++.|.....|..|+++|+++++|+|.+  |++.|.....|..|+++
T Consensus        12 ~~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGC-------GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTT-------CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCC-------ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            44678899988  6       999999999999999999999999965  99999999999999875

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.4e-10  Score=75.21  Aligned_cols=44  Identities=25%  Similarity=0.429  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            58899999999999999999999999999999998             889999975

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=75.27  Aligned_cols=44  Identities=27%  Similarity=0.490  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=4e-10  Score=77.93  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHh-hhcCCCccccccccccccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RKHGEKKWKCEKCSKRYAV  148 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ekp~~C~~C~k~F~~  148 (365)
                      +.++++|.|++|       ++.|.....|..|++ +|.++++|+|.+|++.|.+
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            557889999998       999999999999987 8999999999999998875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.3e-10  Score=75.31  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC-------------CCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.97  E-value=1.5e-10  Score=77.07  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKEC-------GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSS-------CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.5e-10  Score=75.20  Aligned_cols=44  Identities=30%  Similarity=0.453  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS-------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.97  E-value=3.8e-10  Score=73.39  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=39.3

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      |+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA-------------GESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC-------------CCCCCCCC
Confidence            6788999999999999999999999999999998             88999985

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.3e-10  Score=75.34  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS-------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.9e-10  Score=75.01  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            48899999999999999999999999999999998             889999975

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.1e-10  Score=76.40  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=31.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888776

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.8e-10  Score=74.93  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=3.8e-10  Score=75.06  Aligned_cols=44  Identities=27%  Similarity=0.431  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT-------------TCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.3e-10  Score=74.72  Aligned_cols=44  Identities=23%  Similarity=0.393  Sum_probs=41.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.2e-10  Score=75.38  Aligned_cols=39  Identities=13%  Similarity=0.066  Sum_probs=34.2

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            6 SGEKPFGCSCC-------EKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SSCCCEECSSS-------SCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCccCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            38888999988       8999999999999999999999998877

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.96  E-value=2.4e-10  Score=75.98  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.3e-10  Score=76.02  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=33.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            9 GERPHKCNEC-------GKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCeeCCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8888999988       8999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.4e-10  Score=76.03  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=32.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVC-------GKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCeeCCCc-------CCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4.4e-10  Score=73.80  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|.++++|+|++|++.|.+...|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT-------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC-------------CCCCCCCC
Confidence            68899999999999999999999999999999998             88999985

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=4e-10  Score=74.95  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=41.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      +|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT-------------QETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS-------------SCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999974

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.1e-10  Score=76.29  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNEC-------GKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSS-------CCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCeECCCC-------CchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            7888888887       8888888888888888888888888877

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.3e-10  Score=75.47  Aligned_cols=44  Identities=23%  Similarity=0.389  Sum_probs=41.1

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999998             889999975

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.4e-10  Score=76.04  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNEC-------GKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCcCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8888999988       8999999999999999999999999877

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.4e-10  Score=74.76  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT-------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=76.18  Aligned_cols=38  Identities=21%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCeECCCC-------CCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            7778888887       8888888888888888888888888776

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.3e-10  Score=75.22  Aligned_cols=44  Identities=30%  Similarity=0.414  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------SCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999997             889999975

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4e-10  Score=74.92  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=41.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC-------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.4e-10  Score=75.98  Aligned_cols=39  Identities=18%  Similarity=0.192  Sum_probs=32.6

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            8 TGEKPYKCEEC-------GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSEECSSS-------CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCcCccCCCc-------cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37888888888       8888888888888888888888888877

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=75.90  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNEC-------GKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSS-------CCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCEeCCcC-------CCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            8889999988       8999999999999999999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.95  E-value=2.2e-10  Score=76.30  Aligned_cols=38  Identities=16%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVEC-------GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSS-------CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.2e-10  Score=76.15  Aligned_cols=38  Identities=21%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|+.|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDC-------GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTT-------CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7778888887       8888888888888888888888888776

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=75.93  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=34.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            9 GERPYICTVC-------GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999988       8999999999999999999999999877

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=5.1e-10  Score=72.72  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      |+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT-------------VKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS-------------CCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            6788999999999999999999999999999998             88999884

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.4e-10  Score=76.04  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHEC-------GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.9e-10  Score=75.55  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=32.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            9 GEKPYICAEC-------GKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCcCeECCCC-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.6e-10  Score=75.92  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=31.1

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            8 SVEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            37778888887       8888888888888888888888888776

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.7e-10  Score=75.75  Aligned_cols=38  Identities=21%  Similarity=0.209  Sum_probs=33.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHEC-------GKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCcCcCCCCC-------CcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            8888999888       8999999999999999998899998877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.95  E-value=2.4e-10  Score=76.03  Aligned_cols=38  Identities=16%  Similarity=0.223  Sum_probs=30.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCREC-------DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSS-------CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            7778888877       7888888888888888888888888776

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.94  E-value=2.3e-10  Score=76.06  Aligned_cols=38  Identities=13%  Similarity=0.117  Sum_probs=31.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            9 GVKPYGCSQC-------AKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.3e-10  Score=75.99  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=31.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            9 GEKLYNCKEC-------GKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCBTTT-------TBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCeECCCC-------CCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888776

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.8e-10  Score=75.70  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=33.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSEC-------GKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcCeECCCC-------CCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            7888999888       8899999999999988988889988877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.7e-10  Score=75.72  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSIC-------GKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCcCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888876

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.1e-10  Score=74.92  Aligned_cols=44  Identities=25%  Similarity=0.456  Sum_probs=41.2

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT-------------GERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT-------------CCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999974

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.94  E-value=2.8e-10  Score=75.58  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=32.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKEC-------GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCcCeECCcc-------ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888876

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.1e-10  Score=73.93  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=40.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC-------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999985

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.6e-10  Score=74.66  Aligned_cols=44  Identities=25%  Similarity=0.308  Sum_probs=41.0

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccC-CceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVR-KRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~-~k~~~C~~  106 (365)
                      .|+++|.++++|.|++|++.|.+...|..|+++|.             + +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             7 89999974

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.2e-10  Score=75.28  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            9 GEKPYVCDYC-------GKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCeECCCC-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3e-10  Score=75.44  Aligned_cols=38  Identities=13%  Similarity=0.210  Sum_probs=32.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDC-------GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCccCCcc-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.9e-10  Score=75.69  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNEC-------GKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEcccc-------CcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            8888999888       8999999999999988988889988877

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.9e-10  Score=73.62  Aligned_cols=43  Identities=26%  Similarity=0.360  Sum_probs=40.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999985

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.94  E-value=5.2e-11  Score=85.09  Aligned_cols=48  Identities=15%  Similarity=0.288  Sum_probs=40.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhh
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAH  155 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H  155 (365)
                      ++++|.|++|       ++.|.....|.   ++|.++++|+|..|++.|.....+..+
T Consensus        11 ~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A           11 NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCcccccc
Confidence            8889999988       89998887776   788889999999999999888776654

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.7e-10  Score=75.83  Aligned_cols=39  Identities=21%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            8 AGEKPYGCSEC-------GKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCCSCBCSSS-------CCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCCcCCCcc-------ChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            37778888887       8888888888888888888888888776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.8e-10  Score=75.65  Aligned_cols=38  Identities=11%  Similarity=0.149  Sum_probs=32.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDIC-------GKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSS-------CCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCcCCCcC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888887       8888888888888888888888888876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=5.8e-10  Score=74.15  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.++..|.+|+++|.             ++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            37789999999999999999999999999999998             889999975

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.4e-10  Score=75.96  Aligned_cols=38  Identities=16%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            9 GEKPYKCNEC-------GKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSSEETTT-------TEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCeECCCc-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7778888887       8888888888888888888888888776

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.1e-10  Score=75.49  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=41.1

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .+++|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4678999999999999999999999999999997             8899999987

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.93  E-value=7.2e-10  Score=76.61  Aligned_cols=48  Identities=25%  Similarity=0.479  Sum_probs=43.6

Q ss_pred             cccCCCCceecccccccccChHhHHHHHH-hcCCCcccccccccccCCceeeCCCCCccCCCCCCccCC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGD  120 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~  120 (365)
                      ..+.++++|.|++|++.|.+...|.+|++ +|.             ++++|.|++|       ++.|.+
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            46778899999999999999999999997 897             8999999999       999875

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.8e-10  Score=75.62  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=31.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+.|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDEC-------GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTT-------CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCc-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888776

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=5.6e-10  Score=74.09  Aligned_cols=44  Identities=23%  Similarity=0.327  Sum_probs=41.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999974

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.8e-10  Score=75.58  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=30.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+.|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECREC-------GKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTT-------CCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCeeCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7778888887       8888888888888888888888888776

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.7e-10  Score=75.09  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|..|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            8 SREKSHQCREC-------GEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             SCCCCEECTTT-------CCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCCEEcccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37888999988       8999999999999999999999998877

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=6.3e-10  Score=73.16  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|.++++|+|++|++.|.+...|..|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA-------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC-------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88899884

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=2.8e-10  Score=75.73  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=32.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHEC-------GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSS-------CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCeECCcC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.9e-10  Score=75.69  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            8 TGEKPYKCMEC-------GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SSCCSSSBTTT-------TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCcCCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37888888887       8888888888888888888888888876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.5e-10  Score=75.88  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNEC-------GKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSS-------CCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCeECCcC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3.4e-10  Score=75.28  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=33.5

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            8 SGEKPFKCEEC-------GKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCcCCCCC-------CCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            37888888888       8888888888888888888888888877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=2.9e-10  Score=75.52  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNEC-------GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTT-------CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7777777777       7777777777777777777777777776

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.92  E-value=4.1e-10  Score=74.89  Aligned_cols=39  Identities=13%  Similarity=0.085  Sum_probs=33.1

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            8 AGVNPYKCSQC-------EKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------SCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37888888888       8888888888888888888888888877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.3e-10  Score=75.31  Aligned_cols=39  Identities=18%  Similarity=0.218  Sum_probs=33.6

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            8 SGEKPYGCNEC-------GKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCEEETTT-------TEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCcCeECCCC-------CcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            37888888888       8888888888888888888888888877

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.6e-10  Score=75.13  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            9 GEKPFKCEEC-------GKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEEETTT-------TEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7777777777       7777777777777777777777777766

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=6.3e-10  Score=73.18  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=40.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|.++++|.|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA-------------AKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC-------------CCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCC
Confidence            58899999999999999999999999999999998             88899884

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.7e-10  Score=74.60  Aligned_cols=44  Identities=32%  Similarity=0.446  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .|+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH-------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.9e-10  Score=75.03  Aligned_cols=39  Identities=18%  Similarity=0.148  Sum_probs=34.4

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            8 SGEKPYKCVEC-------GKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CSCCSEECSSS-------CCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCeECccc-------CchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            48888999988       8999999999999999999999999887

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=3.4e-10  Score=75.18  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=32.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            9 GEKPCKCTEC-------GKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCeeCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.6e-10  Score=75.84  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=28.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777777777       7777777777777777777777777766

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=2.7e-10  Score=75.71  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=30.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            9 GEKPYKCEKC-------GKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SCCSEEETTT-------TEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888776

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=4.3e-10  Score=74.74  Aligned_cols=38  Identities=24%  Similarity=0.282  Sum_probs=31.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAEC-------GKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7788888887       8888888888888888888888888765

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.90  E-value=5.4e-10  Score=72.58  Aligned_cols=42  Identities=24%  Similarity=0.368  Sum_probs=39.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS-------------CCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhC-------------CCCCCCC
Confidence            47889999999999999999999999999999998             8888887

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.89  E-value=9.6e-10  Score=71.36  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=38.7

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      |+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            6789999999999999999999999999999998             8889887

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.89  E-value=1e-09  Score=72.59  Aligned_cols=42  Identities=21%  Similarity=0.475  Sum_probs=39.7

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      ..|+++++|.|++|++.|.++..|.+|+++|.             ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            56888999999999999999999999999998             8999999998

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.9e-10  Score=74.07  Aligned_cols=43  Identities=26%  Similarity=0.330  Sum_probs=40.6

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH-------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999997             88999986

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=6.2e-10  Score=74.02  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            8 SGEKPFKCKEC-------GKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCEECCcC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            37888888888       8888888888888888888888888765

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.2e-09  Score=71.91  Aligned_cols=43  Identities=23%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|.++++|.|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA-------------GESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT-------------TSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC-------------CCCCCCCC
Confidence            47889999999999999999999999999999998             88999985

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=1.3e-09  Score=72.09  Aligned_cols=43  Identities=28%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      +.++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5678899999999999999999999999999998             889999974

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=5.8e-10  Score=74.30  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHh-hhcCCCccccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RKHGEKKWKCEKC  142 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ekp~~C~~C  142 (365)
                      ++++|.|++|       ++.|.....|..|++ +|++++||+|+.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIEC-------GKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSS-------CCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCEECCcc-------CchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            7777888877       788888888888887 7877888887776

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.4e-09  Score=73.01  Aligned_cols=42  Identities=26%  Similarity=0.478  Sum_probs=38.7

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      ..+..+++|.|++|++.|.+...|.+|+++|.             ++++|.|++|
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            35677899999999999999999999999998             8899999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=7.5e-10  Score=71.95  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=38.6

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      |+++|+++++|+|++|++.|.+...|.+|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHH-------------SCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcC-------------CCCCCCC
Confidence            7789999999999999999999999999999997             8888887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.87  E-value=1.1e-09  Score=73.62  Aligned_cols=43  Identities=16%  Similarity=0.285  Sum_probs=38.2

Q ss_pred             cccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccc
Q 048287           95 KEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSK  144 (365)
Q Consensus        95 ~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k  144 (365)
                      .+..+++|.|++|       ++.|.....|..|+++|++++||+|++|+|
T Consensus         6 ~~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            3457889999998       999999999999999999999999999986

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=8.8e-10  Score=71.70  Aligned_cols=41  Identities=29%  Similarity=0.411  Sum_probs=38.4

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      |+++|.++++|+|++|++.|.+...|.+|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS-------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC-------------CCCCCCC
Confidence            7889999999999999999999999999999998             7888887

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=8e-10  Score=72.66  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      .|+++|+++++|.|++|++.|.+...|.+|+++|.             ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC-------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999884

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=72.20  Aligned_cols=43  Identities=26%  Similarity=0.295  Sum_probs=39.9

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      ++++|.++++|.|++|++.|.+...|.+|+++|.             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5678999999999999999999999999999998             889999975

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.8e-09  Score=72.18  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecc--cccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           50 LSPKTLMATNRFLCE--ICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      .|.++|+++++|.|.  +|++.|.....|.+|+++|.             ++++|.|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            367889999999998  89999999999999999998             8899999987

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=2e-09  Score=70.80  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      .|+++|+++++|+|++|++.|.+...|..|+++|.             ++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc-------------CCCCCCC
Confidence            58899999999999999999999999999999998             8888877

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.84  E-value=1e-09  Score=75.71  Aligned_cols=46  Identities=13%  Similarity=0.147  Sum_probs=43.3

Q ss_pred             CCCCCchhhhhcCccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           39 GTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        39 ~~~~~~~~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++.|.....|..|+++|+++++|.|++|++.|.....|..|+++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            4678888899999999999999999999999999999999999998

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=5.6e-10  Score=72.51  Aligned_cols=40  Identities=20%  Similarity=0.475  Sum_probs=28.3

Q ss_pred             HHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceec
Q 048287          127 HFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKC  166 (365)
Q Consensus       127 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C  166 (365)
                      |+++|+++++|+|++|++.|.....|..|+++ .++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            55667777777777777777777777777777 56677766

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=2.3e-09  Score=70.27  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             ccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           52 PKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        52 ~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      .++|+++++|.|++|++.|.....|.+|+++|.             ++++|.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            357889999999999999999999999999998             889999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.82  E-value=8.3e-10  Score=76.22  Aligned_cols=50  Identities=14%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             ccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcc
Q 048287           68 KGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKW  137 (365)
Q Consensus        68 k~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~  137 (365)
                      |.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++++||
T Consensus         4 k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCC
Confidence            55666666666666665             6666666666       66666666666666666666665

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.81  E-value=8.3e-10  Score=78.73  Aligned_cols=54  Identities=13%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             hhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHH
Q 048287           48 IALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGI  124 (365)
Q Consensus        48 l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L  124 (365)
                      |..|+++|+++++|.|++||+.|.....|.   ++|.             ++++|.|++|       ++.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~-------------~~k~~~C~~C-------~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDP-------------MTGTFRCTFC-------HTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEET-------------TTTEEBCSSS-------CCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcC-------------CCCCEECCCC-------CCccccCccc
Confidence            567999999999999999999999988886   7787             8999999999       9999776543

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.6e-09  Score=71.91  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            9 GQRPYECIEC-------GKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSEECSSS-------CCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            7888888888       888888888888888888888888863

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.80  E-value=1.7e-09  Score=71.89  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            9 GEKPFECAEC-------GKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCEECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7888888888       888888888888888888888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.80  E-value=1.9e-09  Score=70.01  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            7 GENPYECSEC-------GKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCccCCCc-------ChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            6777777777       77777777777777777777777774

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2e-09  Score=71.35  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEEC-------GKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCC-------CCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            7888888888       888888888888888888888888864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=3.1e-09  Score=70.22  Aligned_cols=42  Identities=12%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             cccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccccc
Q 048287           95 KEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCS  143 (365)
Q Consensus        95 ~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~  143 (365)
                      .|.++++|.|++|       ++.|.....|..|+++|+++++|.|+.|+
T Consensus         4 ~h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTT-------TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCC-------CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3458889999998       89999999999999999999999999886

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2e-09  Score=71.34  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            9 GEKPYKCNEC-------GKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECTTS-------CCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCeecccc-------CChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            7888888888       888888888888888888888888863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=71.73  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            9 GERHYECSEC-------GKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCCCeECCcC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7777888877       788888888888888888888887753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.3e-09  Score=71.14  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+.
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            9 GERHYECSEC-------GKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SCCCEECSSS-------CCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCCCCC-------CcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            7788888887       888888888888888888888888753

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.2e-09  Score=71.20  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            9 GEKPYECKVC-------SKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7888888887       888888888888888888888888864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.9e-09  Score=71.49  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=28.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            9 GENPFICSEC-------GKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             SCCSCBCTTT-------CCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCEECCcc-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6777777777       77777777777777777777777775

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=71.24  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            9 GEKPYICNEC-------GKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCcCEECCCC-------ChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            7778888877       788888888888888888888887753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.1e-09  Score=71.34  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=27.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            9 GGKPYQCNEC-------GKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSCSSSCCSS-------CCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6777777777       77777777777777777777777775

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.4e-09  Score=69.40  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=26.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|.
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            7 GEKPYSCAEC-------KETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCCSCBCTTT-------CCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            6777777777       77777777777777777777777763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2e-09  Score=71.31  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=30.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            9 GEKPFECSEC-------QKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7788888887       888888888888888888888888863

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2e-09  Score=71.47  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            9 GEKPYKCNEC-------GKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCBCSSS-------CCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6777777777       777777777777777777777777753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.3e-09  Score=71.21  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=26.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            9 GEKPFQCEEC-------GKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSBCCSSS-------CCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCcCCCCCCC-------CcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            6777777777       77777777777777777777777775

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.3e-09  Score=71.09  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            9 GEKPYECSDC-------GKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SCCSSCCSSS-------CCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7777888777       788888888888888888778877753

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.7e-09  Score=70.84  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNEC-------KKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTT-------CCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            7888888887       888888888888888888888888863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=4.5e-09  Score=69.65  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=34.3

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 h~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVC-------HKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSS-------CCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCeeCccc-------CcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            447888888888       8888888888888888888888888877

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.4e-09  Score=70.96  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=29.0

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            9 GEKPYRCGEC-------GKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            7778888887       88888888888888888888888875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.2e-09  Score=71.29  Aligned_cols=40  Identities=15%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            7 GEGEKPYQCSEC-------GKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCCTTCCSSS-------CCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            447888888888       8888888888888888888888888877

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.3e-09  Score=71.09  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            9 GEKPYKCNEC-------GKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCTTT-------TCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CCCCeECCcC-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6777777777       77777777777777777777777775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.4e-09  Score=71.06  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=27.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            9 GEKCYKCDVC-------GKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCBCSSS-------CCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6777777777       77777777777777777777777775

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.3e-09  Score=71.25  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            9 GEKPYKCQVC-------GKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCcccCCCCC-------CcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            6677777776       77777777777777777777777765

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=4.6e-09  Score=67.82  Aligned_cols=39  Identities=26%  Similarity=0.443  Sum_probs=36.3

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVC  104 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C  104 (365)
                      ++|+++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            57889999999999999999999999999998             8888887

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=3.1e-09  Score=70.50  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=30.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            9 GEKPYKCSDC-------GKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             SCCCEECSSS-------CCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCEECccc-------CCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            7888888888       88888888888888888888888886

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.6e-09  Score=70.88  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=28.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            9 GKKPYECKEC-------RKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCSCCCSSS-------CCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCc-------CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7777888877       78888888888888888888887775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=3.3e-09  Score=69.46  Aligned_cols=36  Identities=19%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            9 GEKPYECNEC-------QKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSEECTTT-------CCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            7778888887       88888888888888888888888774

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.1e-09  Score=71.27  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=26.2

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            9 GEKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCTTCCSSS-------CCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCeECCCC-------CcccCChhHHHHHhHhcCCCCCCCCC
Confidence            6677777776       77777777777777777777777775

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.4e-09  Score=79.55  Aligned_cols=66  Identities=17%  Similarity=0.136  Sum_probs=48.5

Q ss_pred             hhhhcCccccCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHH
Q 048287           46 EVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIK  125 (365)
Q Consensus        46 ~~l~~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~  125 (365)
                      ..|..|++++.++++|.|++|++.|. ...|..|+ .|.             ++++|.|+.|       ++.|. ...|.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c-------------~~~~~~C~~C-------~~~~~-~~~l~   59 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC-------------GARTELCGNC-------GRNVL-VKDLK   59 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH-------------HHCEEECSSS-------CCEEE-TTGGG
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc-------------CCCceEcccC-------CCcCc-HHHHH
Confidence            34667777778888888888888884 77788887 665             7777788776       77666 47777


Q ss_pred             HHHhhhcCC
Q 048287          126 KHFCRKHGE  134 (365)
Q Consensus       126 ~H~~~H~~e  134 (365)
                      .|+++|.++
T Consensus        60 ~H~~~c~~~   68 (75)
T 2d9k_A           60 THPEVCGRE   68 (75)
T ss_dssp             THHHHBTTB
T ss_pred             HHHHHccCC
Confidence            777777664

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=6.3e-10  Score=85.49  Aligned_cols=34  Identities=21%  Similarity=0.405  Sum_probs=19.7

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +.++|+++++|.|++|++.|.+...|..|+++|.
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht   49 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN   49 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC
Confidence            3445555566666666666666666666655554

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.8e-09  Score=70.73  Aligned_cols=36  Identities=14%  Similarity=0.128  Sum_probs=29.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            9 GEKPYSCNVC-------GKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCSEEETTT-------TEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CCCCeECccc-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7788888887       88888888888888888888888875

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.9e-09  Score=69.74  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            9 GMKPYVCNEC-------GKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSCCTTT-------CCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            6666777666       66777777777777666666666663

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=4.2e-09  Score=69.12  Aligned_cols=36  Identities=8%  Similarity=0.113  Sum_probs=28.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            9 TRKRYECSKC-------QATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSSEECTTT-------CCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            7777888777       77888888888888788777777774

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=3.5e-09  Score=68.68  Aligned_cols=36  Identities=11%  Similarity=0.181  Sum_probs=28.1

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         7 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            7 GGEKPYKCETC-------GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CSSCSEECTTT-------CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCCEeCCCc-------ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            37777888877       7888888888888888888877776

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.7e-09  Score=69.98  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=21.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            9 GENPYECCEC-------GKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSCEETTT-------TEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCcCeeCCCC-------CCccCCHHHHHHHHHHcCCCCCCCC
Confidence            5566666665       6666666666666666666666655

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.9e-09  Score=70.69  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            9 GERPFKCNEC-------GKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCCCSSS-------CCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7778888887       88888888888888888888888775

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.72  E-value=4.5e-09  Score=68.08  Aligned_cols=36  Identities=8%  Similarity=0.071  Sum_probs=28.7

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         7 ~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            7 GGETPYLCGQC-------GKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CSSCCEECSSS-------CCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHhhhcCCCCCCCC
Confidence            37778888887       8888888888888888888888877

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.5e-09  Score=70.27  Aligned_cols=36  Identities=8%  Similarity=0.132  Sum_probs=28.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC-CCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG-EKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~-ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++ ++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            9 KEKCFKCNKC-------EKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CSCCEECSSS-------CCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCCCEECcCC-------CCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            7778888887       8888888888888888887 7888875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.9e-09  Score=69.29  Aligned_cols=36  Identities=8%  Similarity=0.090  Sum_probs=26.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|.
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKC-------DRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSEECSSS-------SCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            6777777777       77777777777777777777777763

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=3.6e-09  Score=68.68  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=23.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            8 GEKPYPCEIC-------GTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSCCBCCSSS-------CCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCEECCCC-------CCccCCHHHHHHHHHhcCCCCCCCC
Confidence            6666666666       6666666666666666666666665

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4e-09  Score=69.97  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=24.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            9 GEKPYECDVC-------RKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCBCTTT-------CCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCc-------CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6666666666       66666666666676666666666664

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=6e-09  Score=68.42  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=28.9

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            8 AAKTTSECQEC-------GKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSSCCCCCTTT-------CCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCcCeECCCC-------CcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            37778888877       88888888888888888888888774

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=6e-09  Score=69.57  Aligned_cols=41  Identities=10%  Similarity=0.128  Sum_probs=34.7

Q ss_pred             cccCCceeeCC--CCCccCCCCCCccCChhHHHHHHhhhcCCCccccccc
Q 048287           95 KEVRKRVYVCP--EKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKC  142 (365)
Q Consensus        95 ~~~~~k~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C  142 (365)
                      .|.++++|.|.  .|       ++.|.....|..|+++|++++||+|.+|
T Consensus         6 ~H~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGC-------GWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSC-------CCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CcCCCCCeECCCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            34588889997  67       8999999999999999999999998877

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.68  E-value=4.3e-09  Score=69.78  Aligned_cols=36  Identities=11%  Similarity=0.100  Sum_probs=29.4

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|+++++|+|.
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKEC-------GMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSS-------CCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCccc-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7788888887       88888888888888888888888875

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=4.5e-09  Score=69.60  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            9 GEKPYECNQC-------GKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSEETTT-------TEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCeECCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6666666666       66666666666666666666666664

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=2.1e-09  Score=79.86  Aligned_cols=51  Identities=24%  Similarity=0.416  Sum_probs=29.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      +++++.|++|       ++.| ....|..|+ .|.+++||.|..|++.|. ...|..|+++
T Consensus        14 ~~r~~~C~~C-------~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A           14 PLRLAVCQHC-------DLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             CCCCEECSSS-------CCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             CCcccCCccc-------ChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            5556666655       5555 355556665 555566666666665544 3555555555

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=2e-08  Score=65.65  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=34.4

Q ss_pred             cccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           95 KEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        95 ~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      .|.++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         4 ~h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNEC-------DCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSS-------CCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCCCCCEECCCC-------CCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            3458889999998       999999999999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.1e-08  Score=67.22  Aligned_cols=35  Identities=17%  Similarity=0.084  Sum_probs=26.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            9 GEKPYECNEC-------GKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcCeECCCC-------CcccCchHHHHHHHhHhcCCCCCCC
Confidence            6777777777       7777777777777777777777766

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=5.5e-09  Score=68.53  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=21.3

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            9 DSKSYNCNEC-------GKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCEEETTT-------TEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCeECccc-------CcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5556666665       6666666666666666666666655

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=2.4e-08  Score=66.16  Aligned_cols=39  Identities=15%  Similarity=0.095  Sum_probs=32.3

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEK  141 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~  141 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         7 h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            7 GHGERGHRCSDC-------GKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCSSS-------CCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCcCCCCC-------CCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            447888888888       888888888888888888888888863

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=3.3e-08  Score=63.66  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=28.7

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         5 h~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQEC-------GKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSS-------CCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             cCCCCCeECCCC-------CCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            447777888877       7888888888888888888887776

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=2.7e-08  Score=65.51  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      |.++++|.|++|       ++.|.....|..|+++|+++++|+|+
T Consensus         7 h~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHC-------GKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTT-------TEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCcCccCCCC-------CCccCChHHHHHHHHHhCCCCCCCCC
Confidence            447888888888       88888888888888888888888886

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.54  E-value=3.6e-08  Score=62.78  Aligned_cols=38  Identities=24%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             cCCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCC
Q 048287           55 LMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCP  105 (365)
Q Consensus        55 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~  105 (365)
                      |+++++|.|++|++.|.....|..|+++|.             ++++|.|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCccceec
Confidence            467899999999999999999999999998             77887653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=6.3e-09  Score=79.83  Aligned_cols=53  Identities=11%  Similarity=0.212  Sum_probs=45.8

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++||+|..|.    ....|..|.+++
T Consensus        20 H~~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~   72 (88)
T 1x6f_A           20 RLQNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYA   72 (88)
T ss_dssp             CCCCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCC
T ss_pred             cCCCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccc
Confidence            448999999999       99999999999999999999999997764    566777777773

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=7.4e-08  Score=60.32  Aligned_cols=33  Identities=18%  Similarity=0.469  Sum_probs=30.8

Q ss_pred             ccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           52 PKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        52 ~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|+++++|.|++|++.|.+...|..|+++|+
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            357889999999999999999999999999997

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.47  E-value=9.4e-08  Score=59.83  Aligned_cols=34  Identities=32%  Similarity=0.655  Sum_probs=32.6

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |+++|+++++|+|++|++.|.+...|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            7889999999999999999999999999999996

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.42  E-value=1.6e-07  Score=57.85  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|+++++|.|.+|++.|.+...|.+|++.|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            4678899999999999999999999999997

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.41  E-value=1.8e-07  Score=57.77  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=29.2

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|.++++|+|.+|++.|.....|.+|+++|.
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            4778999999999999999999999999997

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.38  E-value=2.1e-07  Score=67.34  Aligned_cols=40  Identities=25%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             ccCCCCceeccc--ccccccChHhHHHHH-HhcCCCcccccccccccCCceeeCCC
Q 048287           54 TLMATNRFLCEI--CGKGFQRDQNLQLHR-RGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        54 ~~~~~k~~~C~~--Cgk~F~~~~~L~~H~-~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      ..+++|||+|.+  |+|.|.+..+|.+|+ ++|+             ++|||.|.+
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCccccc
Confidence            457789999975  999999999999997 6898             899999976

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.38  E-value=2.3e-07  Score=58.96  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      .++++|.|++|       ++.|.....|..|+++|+++++|.|
T Consensus         2 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFC-------KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTT-------CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCC-------CcccCCHHHHHHHHHHcCCCcccee
Confidence            36788999988       8999999999999999998888876

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.32  E-value=2.5e-07  Score=56.68  Aligned_cols=26  Identities=35%  Similarity=0.626  Sum_probs=24.9

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            58999999999999999999999998

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.28  E-value=3.9e-07  Score=57.20  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             ccccCCCCceecccccccccChHhHHHH-HHhcC
Q 048287           52 PKTLMATNRFLCEICGKGFQRDQNLQLH-RRGHN   84 (365)
Q Consensus        52 ~k~~~~~k~~~C~~Cgk~F~~~~~L~~H-~~~H~   84 (365)
                      +++|+++++|+|++|++.|..+..|..| ++.|.
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            3678899999999999999999999999 89986

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.27  E-value=5.5e-07  Score=65.20  Aligned_cols=41  Identities=15%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHH-hhhcCCCcccccc
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHF-CRKHGEKKWKCEK  141 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~H~~ekp~~C~~  141 (365)
                      ..++|||+|.+-+|     +++|.....|..|+ ++|+++|||.|..
T Consensus        22 ~sGEKPYkC~~~~C-----gKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           22 YSPYRPYRCVHQGC-----FAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSSCSCBCCSTTC-----CCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccCCCCeECCCCCc-----ChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            45788888875222     88888888888887 5788888888843

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=5.1e-07  Score=56.04  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +.|.++++|+|.+|++.|.....|.+|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            35778899999999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=6e-07  Score=55.72  Aligned_cols=32  Identities=22%  Similarity=0.445  Sum_probs=29.8

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .+|.++++|+|++|++.|.....|..|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            36788999999999999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=5.6e-07  Score=55.73  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=29.3

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|.++++|+|.+|++.|.....|..|+++|.
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5788999999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=4.8e-07  Score=56.53  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             cccCCCCceecccccccccCh-HhHHHHHHhcC
Q 048287           53 KTLMATNRFLCEICGKGFQRD-QNLQLHRRGHN   84 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~-~~L~~H~~~H~   84 (365)
                      ++|.++++|+|++|++.|... ..|.+|+++|.
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            468889999999999999999 99999999996

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=8.1e-07  Score=56.77  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.5

Q ss_pred             ccCCCCceeccc--ccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .+.+++||+|++  |+|.|.++..|.+|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            457889999986  9999999999999999997

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.21  E-value=8.6e-07  Score=54.16  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=27.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcccc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKC  139 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C  139 (365)
                      ++|.|++|       ++.|.....|..|+++|+++++|.+
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPEC-------PKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSS-------CCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCC-------CchhCCHHHHHHHHHHhCCCCCCCC
Confidence            47888888       8889888889999888888888753

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=9.2e-07  Score=54.69  Aligned_cols=31  Identities=29%  Similarity=0.618  Sum_probs=29.1

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .|.++++|.|++|++.|.....|..|+++|.
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            4678899999999999999999999999997

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.17  E-value=1.1e-06  Score=54.52  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=28.8

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .|..+++|+|++|++.|.....|..|+++|.
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            4677899999999999999999999999997

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.16  E-value=7.2e-07  Score=55.64  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=24.5

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKK  136 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp  136 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++|
T Consensus         5 ~~~k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            5 SSGRSYSCPVC-------EKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCEETTT-------TEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCcCCCCC-------CCccCCHHHHHHHHHHHcCCCC
Confidence            36777777777       7777777777777777777664

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.15  E-value=1e-06  Score=58.94  Aligned_cols=31  Identities=26%  Similarity=0.568  Sum_probs=28.8

Q ss_pred             ccCCCCceecccccccccChHhHHHHHH-hcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRR-GHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~   84 (365)
                      +|+++++|.|.+|++.|.....|..|++ +|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4788999999999999999999999999 997

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.15  E-value=7.8e-07  Score=55.91  Aligned_cols=30  Identities=30%  Similarity=0.781  Sum_probs=27.7

Q ss_pred             cCCCCceecc--cccccccChHhHHHHHHhcC
Q 048287           55 LMATNRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        55 ~~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |+++++|.|.  .|++.|.+...|.+|+++|.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            5678999999  59999999999999999997

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.13  E-value=9.5e-07  Score=55.07  Aligned_cols=31  Identities=19%  Similarity=0.472  Sum_probs=14.8

Q ss_pred             HhhhcCCCccccccccccccchhhhhhhhcc
Q 048287          128 FCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       128 ~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      +++|++++||+|+.|++.|.....|..|+++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            3444444444444444444444444444444

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.13  E-value=1.3e-06  Score=50.34  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=25.0

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|.|++||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999884

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.13  E-value=1.8e-06  Score=52.86  Aligned_cols=33  Identities=18%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKK  136 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp  136 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++|
T Consensus         3 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            3 SGSSGYVCALC-------LKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCSEECSSS-------CCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCeECCCC-------cchhCCHHHHHHHHHHHcCCCC
Confidence            36778888887       8888888888888888877764

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.12  E-value=1.1e-06  Score=50.91  Aligned_cols=27  Identities=30%  Similarity=0.680  Sum_probs=24.9

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|+|++||+.|.....|.+|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999883

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.12  E-value=2.1e-06  Score=52.74  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=25.3

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCc
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKK  136 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp  136 (365)
                      .++++|.|++|       ++.|.....|..|+++|++++|
T Consensus         3 ~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            3 SGKRPFVCRIC-------LSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             SCCSCEECSSS-------CCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCcCeeCCCC-------CcccCCHHHHHHHHHHcCCCCC
Confidence            36778888887       8888888888888888877664

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.06  E-value=2.9e-06  Score=53.16  Aligned_cols=34  Identities=9%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             cCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCCcc
Q 048287           97 VRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEKKW  137 (365)
Q Consensus        97 ~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~  137 (365)
                      .++++|.|++  |       ++.|.....|..|+++|+++++|
T Consensus         2 ~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGC-------GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTT-------CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCC-------CcccCCHHHHHHHHHHhCCCCCC
Confidence            3778899984  7       89999999999999999988876

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=3.9e-06  Score=53.51  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=26.6

Q ss_pred             ccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           96 EVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        96 ~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +.+++||+|++  |       ++.|..+..|+.|+++|+++
T Consensus         4 ~~gekp~~C~~~~C-------~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGC-------DYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSC-------CCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            44788899986  6       89999999999999888875

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.02  E-value=2.4e-07  Score=56.24  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=24.7

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|+|++|++.|.....|.+|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            57999999999999999999999997

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=4.4e-06  Score=51.64  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=24.3

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHIC-------ERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSS-------CCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            346777777777       777877777777877777653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.99  E-value=3e-06  Score=49.12  Aligned_cols=27  Identities=30%  Similarity=0.736  Sum_probs=25.2

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.98  E-value=3.9e-06  Score=49.12  Aligned_cols=27  Identities=22%  Similarity=0.625  Sum_probs=25.5

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|.|.+|++.|.....|..|++.|.
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            478999999999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=5.7e-06  Score=50.97  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=25.8

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQC-------SYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSS-------SCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCC-------CcccCCHHHHHHHHHHccCCC
Confidence            447788888887       888888888888888887764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.97  E-value=3.4e-06  Score=49.16  Aligned_cols=26  Identities=38%  Similarity=0.676  Sum_probs=24.7

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            58999999999999999999999996

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.97  E-value=5.4e-06  Score=51.22  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |.++++|.|++|       ++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLC-------EYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSS-------SCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCC-------CchhCCHHHHHHHHHHhccCC
Confidence            447778888887       888888888888888777653

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.97  E-value=2.1e-06  Score=56.99  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=31.7

Q ss_pred             hcCccccCCCCceecc--cccccccChHhHHHHHHhcC
Q 048287           49 ALSPKTLMATNRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        49 ~~h~k~~~~~k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ..|...|+++++|.|.  .|++.|.+...|.+|+++|.
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            3445669999999996  79999999999999999997

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.95  E-value=3.8e-06  Score=52.91  Aligned_cols=27  Identities=33%  Similarity=0.787  Sum_probs=25.0

Q ss_pred             ccCCCCceecccccccccChHhHHHHH
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHR   80 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~   80 (365)
                      .+.++++|+|++|||.|.++++|.+|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            357889999999999999999999998

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.95  E-value=3.8e-06  Score=52.49  Aligned_cols=31  Identities=29%  Similarity=0.606  Sum_probs=28.2

Q ss_pred             ccCCCCceeccc--ccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .|+++++|.|.+  |++.|.....|.+|+++|.
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            367889999995  9999999999999999996

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=5.7e-06  Score=51.43  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=24.9

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCCh-hHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDL-TGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~-~~L~~H~~~H~~ek  135 (365)
                      |.++++|.|++|       ++.|... ..|..|+++|++++
T Consensus         4 h~~~k~~~C~~C-------~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            4 GSSGRAMKCPYC-------DFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCCCEECSSS-------SCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCeECCCC-------ChhhccCHHHHHHHHHhcCCCC
Confidence            347778888887       8888887 78888888877654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.94  E-value=4.6e-06  Score=60.13  Aligned_cols=32  Identities=28%  Similarity=0.559  Sum_probs=29.6

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ..+.++++|+|.+|+|.|.++..|.+|+++|+
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            34778899999999999999999999999997

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=7.4e-06  Score=50.42  Aligned_cols=33  Identities=9%  Similarity=0.128  Sum_probs=25.6

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +.++++|.|++|       ++.|.....|..|+++|++++
T Consensus         4 h~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMC-------GKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTT-------CCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcC-------CCCcCchHHHHHHHHHhcCCC
Confidence            447778888887       888888888888888887764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.93  E-value=5e-06  Score=48.34  Aligned_cols=26  Identities=38%  Similarity=0.962  Sum_probs=24.6

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999997

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=49.91  Aligned_cols=26  Identities=38%  Similarity=0.821  Sum_probs=23.9

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++||+.|.....|..|+++|.
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999873

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=8.7e-06  Score=50.22  Aligned_cols=33  Identities=12%  Similarity=0.266  Sum_probs=26.6

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +..+++|.|++|       ++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYC-------NKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTT-------CCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCC-------CceeCCHHHHHHHHHHhCCCC
Confidence            347788888888       888888888888888888764

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.88  E-value=5.5e-06  Score=59.69  Aligned_cols=32  Identities=9%  Similarity=0.146  Sum_probs=18.2

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +..+++|.|.+|       ++.|.....|+.|+++|+++
T Consensus         8 ~~~ekpy~C~~C-------gK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLC-------GKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTT-------CCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCccCcCCCCC-------CCccCCHHHHHhhhhhhCCC
Confidence            344555555555       55555555555555555554

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.88  E-value=6.3e-06  Score=48.17  Aligned_cols=26  Identities=19%  Similarity=0.455  Sum_probs=24.6

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            57999999999999999999999997

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.87  E-value=5.2e-06  Score=48.18  Aligned_cols=26  Identities=38%  Similarity=0.682  Sum_probs=24.6

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            58999999999999999999999996

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.87  E-value=2.6e-06  Score=51.53  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=17.5

Q ss_pred             Cccccccccccccchhhhhhhhcc-cCCcce
Q 048287          135 KKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  164 (365)
Q Consensus       135 kp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy  164 (365)
                      +||+|..|++.|.....|..|+++ .+++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            356666666666666666666665 445544

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.84  E-value=5.6e-06  Score=47.97  Aligned_cols=26  Identities=31%  Similarity=0.515  Sum_probs=24.6

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999996

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.04  E-value=2.4e-06  Score=50.01  Aligned_cols=26  Identities=35%  Similarity=0.715  Sum_probs=24.5

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|++|++.|.....|..|+++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            57999999999999999999999996

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.82  E-value=1.1e-05  Score=48.31  Aligned_cols=27  Identities=30%  Similarity=0.760  Sum_probs=25.3

Q ss_pred             CCceecc--cccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|.|.  .|++.|.....|..|+++|.
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4789999  89999999999999999997

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.82  E-value=1.5e-05  Score=49.71  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=27.0

Q ss_pred             ccCCceeeCCC--CCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPE--KTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~--C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +.++++|.|.+  |       ++.|.....|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGC-------GKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTC-------CCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCCC
Confidence            34788899885  7       889999999999988888764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.81  E-value=1e-05  Score=48.09  Aligned_cols=26  Identities=46%  Similarity=0.993  Sum_probs=24.5

Q ss_pred             Cceecc--cccccccChHhHHHHHHhcC
Q 048287           59 NRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|+  +||+.|.....|..|+++|.
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            579998  99999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.01  E-value=2.8e-06  Score=49.90  Aligned_cols=27  Identities=30%  Similarity=0.552  Sum_probs=25.2

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +++|+|++|++.|.....|..|+++|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            368999999999999999999999996

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=1e-05  Score=50.52  Aligned_cols=30  Identities=13%  Similarity=0.242  Sum_probs=19.9

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHH-HhhhcCC
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKH-FCRKHGE  134 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H-~~~H~~e  134 (365)
                      ++++|.|++|       ++.|.....|..| +++|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            6 SGHLYYCSQC-------HYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSCEEECSSS-------SCEEECHHHHHHHHHHHTCCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHHccCc
Confidence            6666777666       6677776677777 6666543

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.79  E-value=9.8e-06  Score=46.29  Aligned_cols=25  Identities=28%  Similarity=0.720  Sum_probs=23.1

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|+|++|++.|.....|.+|+++|.
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999996

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.76  E-value=1.1e-05  Score=50.71  Aligned_cols=24  Identities=13%  Similarity=0.286  Sum_probs=15.2

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHH
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHF  128 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~  128 (365)
                      +++||.|++|       +++|...+.|..|+
T Consensus         5 gekp~~C~~C-------gK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPC-------GIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTT-------TEECSCHHHHHHHH
T ss_pred             CccCeECCCC-------CCccCCHhHccCcC
Confidence            5666666666       66666666666665

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.74  E-value=2.1e-05  Score=45.81  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYC-------GRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCC-------CcccCCHHHHHHHHHHhccCC
Confidence            357788887       888888888888888877654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.71  E-value=2.1e-05  Score=45.56  Aligned_cols=29  Identities=17%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPEC-------PKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSS-------SCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCC-------CchhCCHHHHHHHHHHhcCCC
Confidence            46778877       888888888888888887654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.70  E-value=1.9e-05  Score=52.53  Aligned_cols=32  Identities=19%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHh-hhcCCC
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RKHGEK  135 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ek  135 (365)
                      +++++|.|.+|       ++.|.....|..|++ +|+++.
T Consensus         3 t~~kp~~C~~C-------~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            3 DRDKPYACDIC-------GKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             TTTSCEECTTT-------CCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCcCEECCCc-------CcccCCHHHHHHHhhhhcCCCC
Confidence            36677777776       777777777777777 776654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.69  E-value=2.8e-05  Score=44.98  Aligned_cols=29  Identities=31%  Similarity=0.588  Sum_probs=22.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTT-------CCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCC-------CcccCCHHHHHHHHHHhcCCC
Confidence            46788887       888888888888888887753

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.68  E-value=1.7e-05  Score=46.46  Aligned_cols=26  Identities=27%  Similarity=0.699  Sum_probs=24.0

Q ss_pred             CceecccccccccChHhHHHH-HHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLH-RRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H-~~~H~   84 (365)
                      ++|.|++|++.|.+...|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            579999999999999999999 68886

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.68  E-value=1.3e-05  Score=46.17  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=13.4

Q ss_pred             cceecc-CCCccCChhHHHHHHHHh
Q 048287          162 REYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       162 kpy~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      +||.|+ |++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            455555 555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.67  E-value=2.9e-05  Score=44.81  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=24.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCREC-------GKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTT-------SCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCC-------CCccCChhHHHHHHHHhcCCC
Confidence            46888888       888888888888888888764

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.66  E-value=3e-05  Score=51.24  Aligned_cols=32  Identities=9%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             cCCceeeCC--CCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           97 VRKRVYVCP--EKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        97 ~~~k~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      .++++|.|+  .|       ++.|.....|..|+++|+++|
T Consensus        14 ~~~k~~~C~~~~C-------~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           14 MPDKTFECLFPGC-------TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             ETTTEEECCCTTC-------CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCCeECCCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            366667764  45       667766666777766666653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.62  E-value=3.7e-05  Score=45.85  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             ceeeCC--CCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCP--EKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++|.|+  .|       ++.|.....|..|+++|++++
T Consensus         2 k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGC-------DKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTC-------CCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            567776  56       777777777777777777653

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.62  E-value=3.3e-05  Score=44.91  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=22.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKK  136 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp  136 (365)
                      ++|.|++|       ++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYC-------EFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSS-------SCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCC-------CCccCCHHHHHHHHHHHccCCC
Confidence            35777777       7788877888888877777653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.62  E-value=3.1e-05  Score=44.62  Aligned_cols=29  Identities=14%  Similarity=0.343  Sum_probs=22.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHC-------DKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSC-------CCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCC-------CcccCCHHHHHHHHHHhccCC
Confidence            46778877       888888888888888887764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.61  E-value=3.6e-05  Score=45.58  Aligned_cols=29  Identities=21%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             ceeeCC--CCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCP--EKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      ++|.|+  .|       ++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYC-------GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-------CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCC-------CcccCCHhHHHHHHHHhcCCC
Confidence            467776  66       888888888888888887764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.61  E-value=3e-05  Score=44.83  Aligned_cols=26  Identities=27%  Similarity=0.747  Sum_probs=24.3

Q ss_pred             Cceecc--cccccccChHhHHHHHHhcC
Q 048287           59 NRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|.|+  .|++.|.....|..|+++|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            579999  99999999999999999985

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.65  E-value=1.4e-05  Score=45.37  Aligned_cols=23  Identities=26%  Similarity=0.686  Sum_probs=11.5

Q ss_pred             ceecc-CCCccCChhHHHHHHHHh
Q 048287          163 EYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       163 py~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      ||.|+ |++.|.....|..|++.|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            44555 555555555555554443

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.63  E-value=1.5e-05  Score=46.44  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=16.9

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMC-------GKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5666665       66666666666666666554

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.47  E-value=6.3e-05  Score=43.18  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=15.8

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      ++|.|++|       ++.|.....|..|+++|+
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVC-------GKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSS-------CCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHhcC
Confidence            45666665       666666666666666554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.46  E-value=7e-05  Score=42.71  Aligned_cols=25  Identities=16%  Similarity=0.404  Sum_probs=15.4

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhh
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      ++|.|++|       ++.|.....|..|+++|
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLC-------PQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSS-------SCEESSHHHHHHHHHHC
T ss_pred             cCccCCCc-------ChhhCCHHHHHHHHHHc
Confidence            45666665       66666666666666655

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.57  E-value=1.9e-05  Score=46.13  Aligned_cols=28  Identities=29%  Similarity=0.555  Sum_probs=15.9

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      ++|.|++|       ++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHC-------QRQFADPGALQRHVRIHTGE   29 (30)
Confidence            45555555       55565555566665555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.39  E-value=9e-05  Score=42.03  Aligned_cols=26  Identities=15%  Similarity=0.313  Sum_probs=16.6

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      +|.|++|       ++.|.....|..|+++|++
T Consensus         1 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLC-------ERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSS-------CCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCC-------CCcCCCHHHHHHHHHHcCC
Confidence            3566666       6667666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.36  E-value=8.3e-05  Score=43.30  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=17.1

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHH-HhhhcCC
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKH-FCRKHGE  134 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H-~~~H~~e  134 (365)
                      +|.|+.|       ++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLC-------NRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTT-------CCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCccc-------CcccCChHHHHHHHHHHccCC
Confidence            5666666       6666666666666 4566554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00051  Score=48.86  Aligned_cols=52  Identities=12%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             CCCCccCChhHHHHHH-hhhcCCCccccccccccccchhhhhhhhcccCCcceecc---CCCccCChhHHHHHHHHh
Q 048287          113 HPSRALGDLTGIKKHF-CRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCD---CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       113 ~~~~~f~~~~~L~~H~-~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~~~kpy~C~---Cgk~F~~~~~L~~H~~~h  185 (365)
                      .|++.|.....|..|+ +.|.+.++                     .....+|.|.   |++.+.....|..|+++.
T Consensus         8 ~C~~~f~~~~~l~~Hv~~~Hv~~~~---------------------~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            8 ECPESASSLFDLQRHLLKDHVSQDF---------------------KHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TCCCCCSSHHHHHHHHHHHSCCCCC---------------------CCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCHHHHHHHHHhhccCccc---------------------CCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            3388888888888887 46665441                     0011356663   666666666666666553

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.99  E-value=0.00037  Score=39.92  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=16.7

Q ss_pred             eeeCC--CCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          101 VYVCP--EKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       101 ~~~C~--~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      +|.|+  .|       ++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C-------~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENC-------GRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTT-------CEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcC-------cCccCCHHHHHHHHHHhC
Confidence            56666  65       677777777777766664

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0014  Score=46.51  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             ccccccccChHhHHHHH-HhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           64 EICGKGFQRDQNLQLHR-RGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        64 ~~Cgk~F~~~~~L~~H~-~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      ..|++.|.+...|..|+ +.|.+...       ......|.|.+-+|     ++.+.....|..|++..+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~-------~~~~~~~~C~W~~C-----~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDF-------KHPMEPLACNWEDC-----DFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCC-------CCSSCCEECCCSSC-----CCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCccc-------CCCCCCCEeeCCCC-----cCCCCChHHHHhhccccC
Confidence            45999999999999998 57862110       00123799987666     888888899999998753

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.44  E-value=0.00053  Score=55.81  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             CceecccccccccChHhHHHHH--HhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHR--RGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~--~~H~   84 (365)
                      +++.|.+|...|.....+..|.  +.|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~   58 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHA   58 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHH
Confidence            5688999999999999999998  5663

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.73  E-value=0.0028  Score=51.00  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=29.1

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhc
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      ....|+++++|.|..|+|.|.+...|..|+++.
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            456688899999999999999999999998654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.70  E-value=0.015  Score=49.32  Aligned_cols=81  Identities=19%  Similarity=0.452  Sum_probs=60.1

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcceecc-CCCccCChh
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRD  176 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~  176 (365)
                      +....|+.-||     +..+. ...|..|+. .-.-++..|+.|+..+ .+..|..|... ...+.-.|. |+..|.. .
T Consensus        80 ~l~v~C~n~GC-----~~~~~-~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~  150 (170)
T 3hcs_A           80 SLMVKCPNEGC-----LHKME-LRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-E  150 (170)
T ss_dssp             TSEEECCSTTC-----CCEEE-GGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-G
T ss_pred             hcccCCCCCCC-----Cceec-HhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-H
Confidence            34567764455     66554 567788863 3445788999999988 67789999976 888999999 9998865 5


Q ss_pred             HHHHHHHHhhhh
Q 048287          177 SFITHRAFCDAL  188 (365)
Q Consensus       177 ~L~~H~~~h~~~  188 (365)
                      .|..|...+.+.
T Consensus       151 ~l~~H~~~~~~~  162 (170)
T 3hcs_A          151 DKEIHDQNCPLA  162 (170)
T ss_dssp             GHHHHHTTCCC-
T ss_pred             HHHhHHHhCcCh
Confidence            678999887654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.68  E-value=0.0024  Score=51.42  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             cCCcceecc-CCCccCChhHHHHHHHH
Q 048287          159 CGTREYKCD-CGTVFSRRDSFITHRAF  184 (365)
Q Consensus       159 ~~~kpy~C~-Cgk~F~~~~~L~~H~~~  184 (365)
                      .|+++|.|. |++.|.+...|..|++.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhh
Confidence            567788887 88888888888888755

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.38  E-value=0.0059  Score=49.54  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHH--hhhcCC-Cccccccc------cccccchhhhhhhhcc-cCCcceecc-
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHF--CRKHGE-KKWKCEKC------SKRYAVQSDWKAHSKT-CGTREYKCD-  167 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~--~~H~~e-kp~~C~~C------~k~F~~~~~L~~H~~~-~~~kpy~C~-  167 (365)
                      .+++.|.+|       ...|.+...+..|.  +.|... +.|.+..+      ++.|...    .+... ...+.|.|. 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCC
Confidence            467899999       99999999999999  566532 44554211      2222221    12223 456789999 


Q ss_pred             CCCccCChhHHHHHHHH
Q 048287          168 CGTVFSRRDSFITHRAF  184 (365)
Q Consensus       168 Cgk~F~~~~~L~~H~~~  184 (365)
                      |++.|.+...|..|...
T Consensus        99 C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEECSSHHHHHHHHTS
T ss_pred             CCCEeCCHHHHHHHHCC
Confidence            99999999999999854

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.82  E-value=0.017  Score=37.75  Aligned_cols=24  Identities=21%  Similarity=0.629  Sum_probs=20.3

Q ss_pred             cceecc-CCCccCChhHHHHHHHHh
Q 048287          162 REYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       162 kpy~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      .+|.|+ |+..|.....|+.||+.+
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            568888 999999888999998865

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.71  E-value=0.022  Score=48.18  Aligned_cols=57  Identities=19%  Similarity=0.339  Sum_probs=43.3

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhcc-cCCcce
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKT-CGTREY  164 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~-~~~kpy  164 (365)
                      -++..|+.|       +..+ .+..|..|+...-..+...|..|+..|.. ..|..|..+ .|+.++
T Consensus       108 ~~~v~C~~C-------~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~~~  165 (170)
T 3hcs_A          108 FALMDCPQC-------QRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLALEH  165 (170)
T ss_dssp             TSEEECTTT-------CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC----
T ss_pred             ceeeECCCC-------ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChhhh
Confidence            456788866       8877 67789999988888899999999987754 678999988 665543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.24  E-value=0.024  Score=37.11  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             CceecccccccccChHhHHHHHHhc
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      .+|.|+.|++.|.....|+.||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            7899999999999999999999743

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.59  E-value=0.55  Score=28.81  Aligned_cols=24  Identities=21%  Similarity=0.659  Sum_probs=19.4

Q ss_pred             Ccceecc-CCCccCChhHHHHHHHH
Q 048287          161 TREYKCD-CGTVFSRRDSFITHRAF  184 (365)
Q Consensus       161 ~kpy~C~-Cgk~F~~~~~L~~H~~~  184 (365)
                      ...+.|. |+.+|.+...+..|++.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhhee
Confidence            3567888 88888888888888876

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=84.90  E-value=0.12  Score=37.36  Aligned_cols=49  Identities=31%  Similarity=0.826  Sum_probs=33.2

Q ss_pred             Ccccc-ccccccccchhhhhhhhcc-cCCcceecc-CCCccCChhHHHHHHHHh
Q 048287          135 KKWKC-EKCSKRYAVQSDWKAHSKT-CGTREYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       135 kp~~C-~~C~k~F~~~~~L~~H~~~-~~~kpy~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      .+..| ..|+..+. +.+|..|+.. ...++..|. |+..|.. ..|..|...+
T Consensus        15 ~~v~C~~~C~~~v~-r~~l~~H~~~~C~~r~v~C~~C~~~~~~-~~l~~H~~~C   66 (76)
T 2yuc_A           15 NVIPCPNRCPMKLS-RRDLPAHLQHDCPKRRLKCEFCGCDFSG-EAYESHEGMC   66 (76)
T ss_dssp             SCCBCTTCCSCBCC-SSSSTTTTTTSCTTSCCCCSSSCCCCCH-HHHHHTTTSC
T ss_pred             cccCCCccccHHhh-HhHHHhhCHhhCCCcceECCCCCCccCH-HHHHHHHhHC
Confidence            45667 56777654 4577888875 777778888 8887763 4566666544

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=83.47  E-value=0.14  Score=37.31  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             CCCCCCCCCCCchhhhhcCccccC---------------CCCceecccccccccCh
Q 048287           33 KKRNLPGTPDPEAEVIALSPKTLM---------------ATNRFLCEICGKGFQRD   73 (365)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~k~~~---------------~~k~~~C~~Cgk~F~~~   73 (365)
                      -+|++||.+....+.+..-...-.               .+-.|+|+.||..|--+
T Consensus         9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A            9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred             ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence            379999999988887654432211               12459999999988543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=82.61  E-value=0.63  Score=28.33  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=21.8

Q ss_pred             ceecccccccccChHhHHHHH-HhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHR-RGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~-~~H~   84 (365)
                      .|.|++|-+.|.....|..|- ..|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccc
Confidence            499999999999999999996 4553

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=82.03  E-value=0.65  Score=28.48  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=18.2

Q ss_pred             Cccccccccccccchhhhhhhhcc
Q 048287          135 KKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       135 kp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      .++.|..|+-+|.....+..|++.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            456788888888888888887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	7e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 7e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 134 EKKWKCEKCSKRYAVQSDWKAHSKTCGT-REYKCD-CGTVFSRRDSFITHR 182
           +K + C+ C K +  +S    H       R Y C  CG  F  +   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 134 EKKWKCEKCSKRYAVQSDWKAHSKTCGTRE--YKCD 167
            K + C+ C K ++       H K   T E  +KC 
Sbjct: 3   GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (75), Expect = 0.004
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 130 RKH-GEKKWKCEKCSKRYAVQSDWKAHSKTCGTRE 163
           R H GEK ++C  C  R+      K H     T  
Sbjct: 1   RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.47
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.45
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.04
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.96
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.92
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.91
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.89
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.87
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.87
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.78
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.76
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.76
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.75
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.75
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.74
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.71
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.7
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.67
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.64
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.61
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.6
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.52
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.52
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.45
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.42
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.39
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.38
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.35
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.34
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.29
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.25
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.21
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.21
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.18
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.16
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.08
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.01
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.97
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.9
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.66
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.52
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.49
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.44
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.43
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.29
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.29
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.23
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.12
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.1
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.95
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.92
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.86
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.85
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.85
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.81
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.78
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.77
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.74
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.71
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.69
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.54
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.53
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.42
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.41
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.39
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.27
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.22
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.18
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.17
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.07
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.05
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.03
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.93
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.84
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.79
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.75
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.26
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.24
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.11
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.04
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.01
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.55
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.0
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.79
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.61
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.28
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.22
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	92.65
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.62
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.83
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.5
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	91.38
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	90.71
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.62
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.37
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.82
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.67
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	87.11
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	85.96
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	85.5
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.48
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.22
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	80.41

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=98.63  Aligned_cols=53  Identities=21%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhh
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      +|+|+|+ ||+.|..+..|..|+++|+             +++||.|++|       ++.|.....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            3566663 6666666666666666665             5666666665       66666666666666554

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-14  Score=98.01  Aligned_cols=53  Identities=17%  Similarity=0.495  Sum_probs=44.1

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccccccccccchhhhhhhhccc
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      +|+|.| .|       |+.|.....|..|+++|++++||+|.+|++.|.....|..|+++|
T Consensus         1 EK~y~C-~C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CC-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            578888 47       888888888888888888888888888888888888888888753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4e-11  Score=75.46  Aligned_cols=37  Identities=32%  Similarity=0.708  Sum_probs=33.7

Q ss_pred             CCCceecccccccccChHhHHHHHH-hcCCCcccccccccccCCceeeCCC
Q 048287           57 ATNRFLCEICGKGFQRDQNLQLHRR-GHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        57 ~~k~~~C~~Cgk~F~~~~~L~~H~~-~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      -+|||+|++|||.|.+..+|.+|++ +|+             ++|||+|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            4699999999999999999999986 798             999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.9e-11  Score=75.02  Aligned_cols=35  Identities=34%  Similarity=0.641  Sum_probs=34.2

Q ss_pred             cCccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           50 LSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        50 ~h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|+++|+++|||+|++|||.|.+.++|.+|+++|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            69999999999999999999999999999999998

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.6e-10  Score=72.62  Aligned_cols=37  Identities=16%  Similarity=0.401  Sum_probs=33.1

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHh-hhcCCCcccccc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFC-RKHGEKKWKCEK  141 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~-~H~~ekp~~C~~  141 (365)
                      .+|||+|.+|       ++.|.....|+.|++ +|++||||+|++
T Consensus         2 ~~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4789999999       999999999999986 799999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.6e-10  Score=72.09  Aligned_cols=34  Identities=32%  Similarity=0.655  Sum_probs=32.8

Q ss_pred             CccccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           51 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        51 h~k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |.++|+++|||+|++|++.|.++.+|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            7899999999999999999999999999999995

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3e-10  Score=68.64  Aligned_cols=31  Identities=32%  Similarity=0.559  Sum_probs=29.9

Q ss_pred             ccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           54 TLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        54 ~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|+++|||+|.+|||.|.+++.|.+|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.2e-10  Score=70.22  Aligned_cols=32  Identities=25%  Similarity=0.537  Sum_probs=30.9

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|+++|||+|.+||+.|.++.+|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            58999999999999999999999999999997

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=1.4e-10  Score=72.36  Aligned_cols=33  Identities=18%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             HHhhhcCCCccccccccccccchhhhhhhhccc
Q 048287          127 HFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTC  159 (365)
Q Consensus       127 H~~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~~  159 (365)
                      |.|+|+|||||+|.+|+++|.++..|..|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            456777777777777777777777777776663

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.4e-10  Score=70.83  Aligned_cols=30  Identities=27%  Similarity=0.531  Sum_probs=18.3

Q ss_pred             hhhcCCCccccccccccccchhhhhhhhcc
Q 048287          129 CRKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       129 ~~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      |+|+|||||+|.+|+++|..+..|..|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            355666666666666666666666666655

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=5e-10  Score=68.55  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=29.0

Q ss_pred             cCCCCceecccccccccChHhHHHHHHhcC
Q 048287           55 LMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        55 ~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |+++|||+|++|+|.|.++.+|.+|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            689999999999999999999999999997

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.5e-09  Score=67.08  Aligned_cols=32  Identities=19%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             cccCCCCceecccccccccChHhHHHHHHhcC
Q 048287           53 KTLMATNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        53 k~~~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++|+++|||+|++|++.|.++.+|.+|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            58999999999999999999999999986543

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.1e-09  Score=63.46  Aligned_cols=27  Identities=37%  Similarity=0.780  Sum_probs=26.0

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|||+|++|+|.|.++.+|.+|+|+|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999996

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.5e-10  Score=68.44  Aligned_cols=29  Identities=28%  Similarity=0.564  Sum_probs=16.8

Q ss_pred             hhcCCCccccccccccccchhhhhhhhcc
Q 048287          130 RKHGEKKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       130 ~H~~ekp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      +|+|||||+|++|++.|.++.+|+.|++.
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            45556666666666665555555555544

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.3e-10  Score=69.48  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=18.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      ++|||.|++|       +++|...+.|..|+++|+||
T Consensus         9 ~ekpy~C~~C-------gK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           9 ERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCCEecCCC-------CceeeCHHHHHHhCccCCCC
Confidence            6666666665       66666666666666666654

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.7e-09  Score=65.77  Aligned_cols=34  Identities=24%  Similarity=0.662  Sum_probs=31.2

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCccccc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCE  140 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~~C~  140 (365)
                      |.|++.+|     +++|..+..|++|+++|+|||||+|+
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCC
Confidence            77887655     99999999999999999999999996

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.74  E-value=2.1e-09  Score=62.95  Aligned_cols=26  Identities=38%  Similarity=0.962  Sum_probs=25.3

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|++|+|.|.+..+|.+|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999998

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.9e-09  Score=60.92  Aligned_cols=26  Identities=35%  Similarity=0.712  Sum_probs=24.7

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|.+|||.|.+.+.|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3e-09  Score=62.21  Aligned_cols=26  Identities=35%  Similarity=0.731  Sum_probs=25.3

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||.|++|||.|.++++|.+|+++|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999998

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.8e-09  Score=62.52  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=23.2

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +++|||+|.+|       +++|...+.|..|+++|+||
T Consensus         3 Tgekpy~C~~C-------gk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           3 SGEKPYGCVEC-------GKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTCCCEECSSS-------CCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCCeeCCCC-------CCEeCchHHhHhhccccCCC
Confidence            47777777777       77777777777777777765

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.6e-09  Score=64.68  Aligned_cols=33  Identities=36%  Similarity=0.751  Sum_probs=30.8

Q ss_pred             eeccc--ccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCC
Q 048287           61 FLCEI--CGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPE  106 (365)
Q Consensus        61 ~~C~~--Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~  106 (365)
                      |.|++  |+|.|.++.+|++|+++|+             ++|||+|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            78976  9999999999999999998             999999974

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=4.8e-09  Score=68.74  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=35.3

Q ss_pred             hhhhhcCccccCCCCceeccc--ccccccChHhHHHHHHhcC
Q 048287           45 AEVIALSPKTLMATNRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        45 ~~~l~~h~k~~~~~k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .+.+..|++ |+++++|+|.+  |+|.|.+.++|.+|+++|+
T Consensus         4 ~~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             CSSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             cchhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            356777885 99999999987  9999999999999999998

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.60  E-value=1.1e-08  Score=59.79  Aligned_cols=29  Identities=31%  Similarity=0.588  Sum_probs=25.0

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |||.|++|       +++|...+.|+.|+++|+|||
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            57888888       888888888899988888875

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.9e-08  Score=60.51  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             cCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           97 VRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        97 ~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +++|||+|++|       ++.|..+..|+.|+++|+.+
T Consensus         3 TGekPy~C~~C-------~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           3 SGKRPFVCRIC-------LSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             SCCSCEECSSS-------CCEESSHHHHHHHHGGGTSC
T ss_pred             CCCccccCCCC-------CCcccChHHHHHHccccCCc
Confidence            46777777776       77777777777777776653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.4e-08  Score=58.28  Aligned_cols=29  Identities=21%  Similarity=0.461  Sum_probs=24.6

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |||.|++|       ++.|...+.|..|+++|+|||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            57888888       888888888888888888875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.8e-08  Score=57.38  Aligned_cols=28  Identities=14%  Similarity=0.325  Sum_probs=22.3

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      +|||+|++|       +++|...+.|..|+++|+|
T Consensus         1 EKPy~C~~C-------~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRIC-------MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCC-------cCEecccccccccCCCccC
Confidence            577888887       8888888888888888875

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.1e-08  Score=57.77  Aligned_cols=31  Identities=23%  Similarity=0.515  Sum_probs=27.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |||.|++.+|     +++|...+.|+.|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5899987666     999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=7.4e-08  Score=56.57  Aligned_cols=30  Identities=13%  Similarity=0.397  Sum_probs=27.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      |||+|++-+|     +++|...+.|+.|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            6899998666     99999999999999999986

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.1e-08  Score=56.57  Aligned_cols=26  Identities=35%  Similarity=0.709  Sum_probs=25.0

Q ss_pred             Cceeccc--ccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|++  |+|.|.+.++|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6899988  9999999999999999998

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=9.5e-08  Score=56.02  Aligned_cols=30  Identities=23%  Similarity=0.517  Sum_probs=26.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      |||+|++-+|     +++|...+.|+.|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            6899988555     99999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.2e-07  Score=61.78  Aligned_cols=35  Identities=14%  Similarity=0.401  Sum_probs=26.9

Q ss_pred             ccCCceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           96 EVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        96 ~~~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +.+++||.|++-+|     ++.|...+.|+.|+++|+|||
T Consensus        13 h~gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             ccCCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            34888888877333     888888888888888888875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.6e-08  Score=56.50  Aligned_cols=26  Identities=46%  Similarity=0.818  Sum_probs=24.8

Q ss_pred             Cceeccc--ccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|++  |||.|.+..+|.+|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6899987  9999999999999999997

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.6e-07  Score=55.50  Aligned_cols=26  Identities=46%  Similarity=0.993  Sum_probs=24.3

Q ss_pred             Cceecc--cccccccChHhHHHHHHhcC
Q 048287           59 NRFLCE--ICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~--~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|+  .|+|.|.+.++|.+|+++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            689995  59999999999999999998

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=2.3e-07  Score=55.13  Aligned_cols=27  Identities=30%  Similarity=0.789  Sum_probs=25.6

Q ss_pred             CCceeccc--ccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++||.|.+  |+|.|.+..+|.+|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            58999988  9999999999999999997

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.7e-07  Score=53.83  Aligned_cols=26  Identities=31%  Similarity=0.696  Sum_probs=24.3

Q ss_pred             Cceeccc--ccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|++  |||.|.+..+|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999984

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=3.5e-07  Score=53.08  Aligned_cols=29  Identities=28%  Similarity=0.717  Sum_probs=25.9

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      |||+|++.+|     +++|...+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            6899999777     9999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.2e-07  Score=51.09  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=19.0

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      |||+|.+|       |++|...+.|..|+++|+
T Consensus         1 KPy~C~eC-------gK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLEC-------GKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSS-------CCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCC-------cCeeccCcccccCccCCC
Confidence            56777777       777777777777777764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.4e-07  Score=48.73  Aligned_cols=25  Identities=44%  Similarity=0.882  Sum_probs=23.6

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |++|+.|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5789999999999999999999996

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=3.3e-07  Score=53.17  Aligned_cols=26  Identities=31%  Similarity=0.733  Sum_probs=24.5

Q ss_pred             Cceeccc--ccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|++  |+|.|.+..+|.+|+|+|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6899987  9999999999999999996

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=1.1e-06  Score=52.14  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=21.8

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      +|||.|++.+|     ++.|...+.|++|+++|+.
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccC
Confidence            46777777555     7777777777777777764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9.3e-07  Score=50.66  Aligned_cols=28  Identities=32%  Similarity=0.700  Sum_probs=22.3

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      |||+|++.+|     +++|...++|+.|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            5788888666     888888888888888875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.9e-06  Score=47.72  Aligned_cols=27  Identities=33%  Similarity=0.758  Sum_probs=25.4

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            589999999999999999999999984

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=3e-06  Score=46.96  Aligned_cols=25  Identities=32%  Similarity=0.751  Sum_probs=17.3

Q ss_pred             Ccceecc-CCCccCChhHHHHHHHHh
Q 048287          161 TREYKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       161 ~kpy~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      +|||.|+ ||+.|.+.+..++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            4677777 777777777777776665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.9e-06  Score=48.27  Aligned_cols=27  Identities=37%  Similarity=0.716  Sum_probs=24.8

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .+...|+.|||.|....+|.+|...|.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs   29 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHS   29 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccC
Confidence            356789999999999999999999998

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1e-05  Score=45.43  Aligned_cols=27  Identities=30%  Similarity=0.828  Sum_probs=25.7

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|||.|++|+..|.++..+..|.|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            589999999999999999999999996

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.2e-05  Score=44.02  Aligned_cols=26  Identities=19%  Similarity=0.499  Sum_probs=22.1

Q ss_pred             cceecc---CCCccCChhHHHHHHHHhhh
Q 048287          162 REYKCD---CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       162 kpy~C~---Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      |||.|.   |+|.|...++|++|++.+|+
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            688996   99999999999999987763

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.7e-05  Score=41.62  Aligned_cols=19  Identities=16%  Similarity=0.330  Sum_probs=10.8

Q ss_pred             CCccCChhHHHHHHhhhcC
Q 048287          115 SRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus       115 ~~~f~~~~~L~~H~~~H~~  133 (365)
                      ++.|+.+..|+.|+|.|+|
T Consensus         8 ~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           8 GKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             TBCCCCHHHHHHHGGGCCC
T ss_pred             hhHhcchhHHHHHhhccCC
Confidence            5555555555555555543

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.6e-05  Score=42.68  Aligned_cols=29  Identities=31%  Similarity=0.684  Sum_probs=24.9

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHG  133 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~  133 (365)
                      |||.|.+.+|     ++++...+.|++|++.++|
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5899999888     9999999999999987664

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=5.4e-05  Score=41.71  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=25.0

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      |.|++|       +......+.|++|++.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            789998       999999999999999999975

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.7e-05  Score=44.13  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCCcc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKW  137 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ekp~  137 (365)
                      +...|+.|       |+.|.+...|.+|...|.+||||
T Consensus         4 k~~~ce~c-------gk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           4 KQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             CSEEETTT-------TEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCC
Confidence            45678888       99999999999999999999987

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.2e-05  Score=42.88  Aligned_cols=27  Identities=33%  Similarity=0.704  Sum_probs=20.4

Q ss_pred             Ccceecc-CCCccCChhHHHHHHHHhhh
Q 048287          161 TREYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       161 ~kpy~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      ++||.|. |...|.+++.+.-|++.|++
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4677777 77777777777777777765

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.6e-05  Score=40.68  Aligned_cols=25  Identities=32%  Similarity=0.660  Sum_probs=23.4

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .+.|.+|||.|...+.|++|..+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4789999999999999999999997

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.9e-05  Score=40.82  Aligned_cols=29  Identities=17%  Similarity=0.326  Sum_probs=22.5

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      ++||+|..|       .+.-...+.|..|++.|+|+
T Consensus         1 erpfkcqlc-------sy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQIC-------PYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSS-------SCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeec-------ccccCCchheEEeeecccCc
Confidence            467888887       77777788888888888764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00011  Score=39.96  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=23.2

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      .++|.+|       |++|...+.|++|+.+|+||
T Consensus         2 ~hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           2 VHVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             cchHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            3578888       99999999999999999875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00016  Score=39.74  Aligned_cols=25  Identities=32%  Similarity=0.724  Sum_probs=23.8

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +|.|++||......+-|+.|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999997

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.10  E-value=0.00015  Score=39.81  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=21.7

Q ss_pred             cceecc---CCCccCChhHHHHHHHHh
Q 048287          162 REYKCD---CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       162 kpy~C~---Cgk~F~~~~~L~~H~~~h  185 (365)
                      .||+|.   |++.|+..+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            589996   999999999999999987

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00022  Score=43.17  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=23.5

Q ss_pred             CCCCceecccccccccChHhHHHHHH
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRR   81 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~   81 (365)
                      ++.|||.|.+|+|.|-.+..+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46799999999999999999999964

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.92  E-value=0.00022  Score=37.63  Aligned_cols=24  Identities=29%  Similarity=0.754  Sum_probs=22.2

Q ss_pred             eecccccccccChHhHHHHHHhcC
Q 048287           61 FLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        61 ~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |+|..|.+.|..++.|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999984

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00045  Score=37.01  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             eCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287          103 VCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus       103 ~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      +|+.|       .+.|.++..|+.|-|.|+|||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            57777       999999999999999999985

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00036  Score=38.13  Aligned_cols=27  Identities=30%  Similarity=0.634  Sum_probs=25.4

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ++||+|..|...-...+.|..|+|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            589999999999999999999999997

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00036  Score=37.82  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             CceecccccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999995

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.81  E-value=0.00046  Score=37.98  Aligned_cols=30  Identities=23%  Similarity=0.611  Sum_probs=27.1

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +||.|.+-+|     .+.|.+...|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5889988877     99999999999999999986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00048  Score=41.64  Aligned_cols=29  Identities=38%  Similarity=0.827  Sum_probs=24.8

Q ss_pred             CCcceecc-CCCccCChhHHHHHHHHhhhh
Q 048287          160 GTREYKCD-CGTVFSRRDSFITHRAFCDAL  188 (365)
Q Consensus       160 ~~kpy~C~-Cgk~F~~~~~L~~H~~~h~~~  188 (365)
                      |.|||.|. |+|.|-.+++|.+|...|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~C~k~   31 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTSCTKS   31 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhhhhhh
Confidence            67899999 999999999999998887653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.77  E-value=0.00059  Score=37.36  Aligned_cols=27  Identities=22%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhh
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRK  131 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H  131 (365)
                      .||.|+.-||     ++.|...+.|++|.++|
T Consensus         2 ~py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCc-----cccccCHHHHhhhhhcc
Confidence            4788888777     99999999999999887

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00041  Score=37.17  Aligned_cols=23  Identities=35%  Similarity=0.668  Sum_probs=22.0

Q ss_pred             ecccccccccChHhHHHHHHhcC
Q 048287           62 LCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        62 ~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .|+.|.|.|..+..|+.|-|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            59999999999999999999998

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0005  Score=37.87  Aligned_cols=26  Identities=19%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             cceecc-CCCccCChhHHHHHHHHhhh
Q 048287          162 REYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       162 kpy~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      +||+|+ |..--.++++|.+|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            578888 88888888888888887664

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.69  E-value=0.00058  Score=40.95  Aligned_cols=27  Identities=26%  Similarity=0.564  Sum_probs=25.1

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .+.|+|.+|+|.|.+-..|--||+.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            367999999999999999999999996

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00082  Score=40.02  Aligned_cols=27  Identities=22%  Similarity=0.664  Sum_probs=24.3

Q ss_pred             CCcceecc---CCCccCChhHHHHHHHHhh
Q 048287          160 GTREYKCD---CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       160 ~~kpy~C~---Cgk~F~~~~~L~~H~~~h~  186 (365)
                      .+|||.|.   |+..|...+.|..|+++|+
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47999995   9999999999999999986

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.53  E-value=0.00053  Score=36.12  Aligned_cols=22  Identities=27%  Similarity=0.735  Sum_probs=15.6

Q ss_pred             eecc-CCCccCChhHHHHHHHHh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      |+|. |.+.|..++.|.+|+++|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            5677 777777777777777665

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00066  Score=38.25  Aligned_cols=30  Identities=27%  Similarity=0.572  Sum_probs=23.5

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHH-hhhcCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHF-CRKHGE  134 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~-~~H~~e  134 (365)
                      |||.|.+.+|     .|+|...+.-.+|+ |+|..|
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~e   31 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSNE   31 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCSC
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccCC
Confidence            5788888777     88888888888886 777653

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0011  Score=35.84  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      +||+|..|       .++-.+.+.|++|+|+|.
T Consensus         2 kp~kck~c-------dyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTC-------DYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSS-------CCEESSHHHHHHHHHHSC
T ss_pred             CCcccccc-------cchhcchhhHhhhhhccc
Confidence            56777777       777777777777777764

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0011  Score=38.60  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             eeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          101 VYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       101 ~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      .|.|.+-+|...  ++.|..+..|..|+|+|+||
T Consensus         2 ~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            477888777544  67899999999999999986

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0008  Score=37.11  Aligned_cols=15  Identities=20%  Similarity=0.215  Sum_probs=6.2

Q ss_pred             CCccCChhHHHHHHh
Q 048287          115 SRALGDLTGIKKHFC  129 (365)
Q Consensus       115 ~~~f~~~~~L~~H~~  129 (365)
                      .....+.++|+.|++
T Consensus         9 ~yrsadssnlkthik   23 (30)
T d1klra_           9 EFRSADSSNLKTHIK   23 (30)
T ss_dssp             SCCCSCSHHHHHHHH
T ss_pred             ccccccchhhhhhhh
Confidence            344444444444443

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0011  Score=36.34  Aligned_cols=24  Identities=25%  Similarity=0.605  Sum_probs=21.9

Q ss_pred             ceecccccccccChHhHHHHHHhc
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      ||.|..|.-.|.++.+|..||+.-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            699999999999999999999643

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.22  E-value=0.00092  Score=37.64  Aligned_cols=24  Identities=38%  Similarity=0.800  Sum_probs=17.7

Q ss_pred             ceecc-CCCccCChhHHHHHHHHhh
Q 048287          163 EYKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       163 py~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      ||.|. |++.|++++-|.+|+.+-|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH   25 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIH   25 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTS
T ss_pred             CcccccccchhhHHHHHHHHHHHHh
Confidence            57777 8888888877777776544

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0019  Score=35.37  Aligned_cols=27  Identities=33%  Similarity=0.756  Sum_probs=25.1

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +..|.|..|...|+++-.|+.||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            467999999999999999999999997

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.17  E-value=0.00086  Score=37.75  Aligned_cols=25  Identities=12%  Similarity=0.429  Sum_probs=18.6

Q ss_pred             ccccccccccccchhhhhhhhcc-cC
Q 048287          136 KWKCEKCSKRYAVQSDWKAHSKT-CG  160 (365)
Q Consensus       136 p~~C~~C~k~F~~~~~L~~H~~~-~~  160 (365)
                      ||.|.+|++.|.++.-|.+|... |+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            57777777777777777777766 54

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.00083  Score=36.98  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=12.8

Q ss_pred             Cccccccccccccchhhhhhhhcc
Q 048287          135 KKWKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       135 kp~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      +||+|..|.....+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            355555555555555555555554

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0023  Score=35.21  Aligned_cols=27  Identities=37%  Similarity=0.587  Sum_probs=24.8

Q ss_pred             Cccccccccccccchhhhhhhhcc-cCC
Q 048287          135 KKWKCEKCSKRYAVQSDWKAHSKT-CGT  161 (365)
Q Consensus       135 kp~~C~~C~k~F~~~~~L~~H~~~-~~~  161 (365)
                      |||.|..|..+-...++|+.|+++ |+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            699999999999999999999999 653

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.003  Score=34.56  Aligned_cols=29  Identities=17%  Similarity=0.438  Sum_probs=24.8

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      +..|.|..|       ...|..+-.|+.||..|+||
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            457889888       89999999999999999875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0019  Score=34.75  Aligned_cols=23  Identities=39%  Similarity=0.712  Sum_probs=20.8

Q ss_pred             ceecccccccccChHhHHHHHHh
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRG   82 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~   82 (365)
                      ||+|..|||.|-++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            68999999999999999999743

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.84  E-value=0.0019  Score=35.47  Aligned_cols=26  Identities=35%  Similarity=0.655  Sum_probs=23.4

Q ss_pred             Cceeccc--ccccccChHhHHHHHHhcC
Q 048287           59 NRFLCEI--CGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        59 k~~~C~~--Cgk~F~~~~~L~~H~~~H~   84 (365)
                      +||.|.+  |.|.|.+..+|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            5889955  9999999999999999986

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0042  Score=36.86  Aligned_cols=30  Identities=10%  Similarity=0.394  Sum_probs=25.6

Q ss_pred             CCceeeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287           98 RKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus        98 ~~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      .+|||.|...||     +.+|.....|..|...|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            478999988877     999999999998888775

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0017  Score=34.97  Aligned_cols=21  Identities=29%  Similarity=0.669  Sum_probs=10.7

Q ss_pred             ccccccccccccchhhhhhhh
Q 048287          136 KWKCEKCSKRYAVQSDWKAHS  156 (365)
Q Consensus       136 p~~C~~C~k~F~~~~~L~~H~  156 (365)
                      ||+|..|||.|.++.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            345555555555555555543

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.26  E-value=0.0071  Score=36.08  Aligned_cols=30  Identities=17%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             CceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCCC
Q 048287           99 KRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK  135 (365)
Q Consensus        99 ~k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~ek  135 (365)
                      .+.|+|.+|       ++.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFC-------KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTT-------CCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCC-------CCccCCcccccchHhhhcchH
Confidence            356888888       888888888888888886554

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.005  Score=32.28  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.6

Q ss_pred             ceecccccccccChHhHHHHHH
Q 048287           60 RFLCEICGKGFQRDQNLQLHRR   81 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~   81 (365)
                      ||+|..|...|.++..|+.||-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999973

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0034  Score=35.23  Aligned_cols=26  Identities=31%  Similarity=0.761  Sum_probs=23.5

Q ss_pred             Cceeccc--ccccccChHhHHHHH-HhcC
Q 048287           59 NRFLCEI--CGKGFQRDQNLQLHR-RGHN   84 (365)
Q Consensus        59 k~~~C~~--Cgk~F~~~~~L~~H~-~~H~   84 (365)
                      |||.|++  |.|.|...+.--.|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6899987  999999999999997 8885

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0059  Score=35.05  Aligned_cols=25  Identities=32%  Similarity=0.926  Sum_probs=21.6

Q ss_pred             ceecc-CCCccCChhHHHHHHHHhhh
Q 048287          163 EYKCD-CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       163 py~C~-Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      .|.|. |+|+|.++..+.+|-..|.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            48898 99999999999999888765

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.008  Score=31.49  Aligned_cols=20  Identities=30%  Similarity=0.826  Sum_probs=11.3

Q ss_pred             ceecc-CCCccCChhHHHHHH
Q 048287          163 EYKCD-CGTVFSRRDSFITHR  182 (365)
Q Consensus       163 py~C~-Cgk~F~~~~~L~~H~  182 (365)
                      ||+|. |...|-.+..|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            45555 555555555555554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.55  E-value=0.01  Score=31.16  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=20.8

Q ss_pred             ceecccccccccChHhHHHHHHh
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRG   82 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~   82 (365)
                      .|.|+.|-|.|.++.++..|.++
T Consensus         1 vypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEE
Confidence            38999999999999999999865

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.016  Score=36.02  Aligned_cols=27  Identities=30%  Similarity=0.646  Sum_probs=24.4

Q ss_pred             CCceecccccccccChHhHHHHHHhcC
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      ...|.|-.|||.|.....|+.|...|-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            357899999999999999999999884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.018  Score=30.93  Aligned_cols=24  Identities=29%  Similarity=0.650  Sum_probs=21.7

Q ss_pred             ceecccccccccChHhHHHHHHhc
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      .|.|+.|+....+++.|..|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            589999999999999999998754

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.015  Score=33.29  Aligned_cols=25  Identities=32%  Similarity=0.732  Sum_probs=22.3

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      .|.|..|||.|.++..+.+|.....
T Consensus         4 afvcskcgktftrrntm~rha~nc~   28 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCA   28 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCC
T ss_pred             eeeecccccchhcchHHHHHhhhcC
Confidence            5899999999999999999986655

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.28  E-value=0.03  Score=29.36  Aligned_cols=22  Identities=32%  Similarity=0.744  Sum_probs=14.7

Q ss_pred             eecc-CCCccCChhHHHHHHHHh
Q 048287          164 YKCD-CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       164 y~C~-Cgk~F~~~~~L~~H~~~h  185 (365)
                      |.|. |-+.|.+++++..|.+..
T Consensus         2 ypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEEe
Confidence            5666 777777777776666654

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.026  Score=35.08  Aligned_cols=25  Identities=28%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             cceecc-CCCccCChhHHHHHHHHhh
Q 048287          162 REYKCD-CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       162 kpy~C~-Cgk~F~~~~~L~~H~~~h~  186 (365)
                      -.|.|. |+|.|.....|+.|...|-
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcC
Confidence            358899 9999999999999999884

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.019  Score=30.89  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=12.0

Q ss_pred             cccccccccccchhhhhhhhcc
Q 048287          137 WKCEKCSKRYAVQSDWKAHSKT  158 (365)
Q Consensus       137 ~~C~~C~k~F~~~~~L~~H~~~  158 (365)
                      |.|+.|+-...++++|+.|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            4555555555555555555544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.038  Score=29.74  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.6

Q ss_pred             ceecccccccccChHhHHHHHHhcC
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGHN   84 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H~   84 (365)
                      |-+|+.|......+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4579999999999999999999995

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.83  E-value=0.062  Score=29.73  Aligned_cols=30  Identities=23%  Similarity=0.572  Sum_probs=25.4

Q ss_pred             ceeeCCCCCccCCCCCCccCChhHHHHHHhhhcCC
Q 048287          100 RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGE  134 (365)
Q Consensus       100 k~~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~~e  134 (365)
                      |.|.|....|     +..|...-.|..|+..|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            4688887766     99999999999999999886

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.086  Score=28.31  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=15.6

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      -+|++|       .+....+..|+.|.|+|.
T Consensus         3 ekc~ec-------syscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSEC-------SYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSS-------SCEESSHHHHHHHHGGGC
T ss_pred             ccCccc-------ccccCcHHHHHHhhcccc
Confidence            456666       666666667777766664

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=91.38  E-value=0.082  Score=28.76  Aligned_cols=26  Identities=19%  Similarity=0.553  Sum_probs=21.2

Q ss_pred             cceecc---CCCccCChhHHHHHHHHhhh
Q 048287          162 REYKCD---CGTVFSRRDSFITHRAFCDA  187 (365)
Q Consensus       162 kpy~C~---Cgk~F~~~~~L~~H~~~h~~  187 (365)
                      +.|.|+   |+..|..+.++++|....|.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CCccccCCCcceEEeehHHHHHHHhhhcc
Confidence            458896   99999999999999876554

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.1  Score=28.05  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=18.2

Q ss_pred             cCCCCCCccCChhHHHHHHhhhc
Q 048287          110 VHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       110 ~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      .+.+|++.|.+.+.+++|+-+|.
T Consensus         5 phkgC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           5 PHKGCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             CSTTCCCEESSHHHHHHHHGGGS
T ss_pred             CcccHHHHhhchHHHHHHhhccC
Confidence            33444999999999999998873

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.62  E-value=0.094  Score=27.86  Aligned_cols=23  Identities=26%  Similarity=0.726  Sum_probs=19.2

Q ss_pred             eecc---CCCccCChhHHHHHHHHhh
Q 048287          164 YKCD---CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       164 y~C~---Cgk~F~~~~~L~~H~~~h~  186 (365)
                      |.|.   |++.|.....|+.|+..|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            7784   9999999999999987764

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.37  E-value=0.13  Score=27.35  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=21.8

Q ss_pred             eeCCCCCccCCCCCCccCChhHHHHHHhhhc
Q 048287          102 YVCPEKTCVHHHPSRALGDLTGIKKHFCRKH  132 (365)
Q Consensus       102 ~~C~~C~C~~~~~~~~f~~~~~L~~H~~~H~  132 (365)
                      |+|-.-+|     +++|.....|+.|+-+|+
T Consensus         2 yvchfe~c-----~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENC-----GKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTC-----CCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCc-----hHHHhhccceEEEeeccc
Confidence            67766666     999999999999998875

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.82  E-value=0.11  Score=29.34  Aligned_cols=26  Identities=31%  Similarity=0.653  Sum_probs=22.2

Q ss_pred             CCCceecccccccccChHhHHHHHHh
Q 048287           57 ATNRFLCEICGKGFQRDQNLQLHRRG   82 (365)
Q Consensus        57 ~~k~~~C~~Cgk~F~~~~~L~~H~~~   82 (365)
                      +..+|.|.-||..|...+.|..|+..
T Consensus         5 kparf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           5 KPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SCCCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cccceeccccceeecChhHHHhhhhe
Confidence            44679999999999999999999753

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.67  E-value=0.079  Score=29.92  Aligned_cols=23  Identities=30%  Similarity=0.777  Sum_probs=18.1

Q ss_pred             cceecc-CCCccCChhHHHHHHHH
Q 048287          162 REYKCD-CGTVFSRRDSFITHRAF  184 (365)
Q Consensus       162 kpy~C~-Cgk~F~~~~~L~~H~~~  184 (365)
                      ..|.|. ||..|++.+.|..|+..
T Consensus         7 arf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cceeccccceeecChhHHHhhhhe
Confidence            458888 88888888888888754

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.18  Score=27.37  Aligned_cols=24  Identities=25%  Similarity=0.581  Sum_probs=20.9

Q ss_pred             ceecccccccccChHhHHHHHHhc
Q 048287           60 RFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        60 ~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      .|.|..|||..+....++.|...-
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            488999999999999999996543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.1  Score=35.33  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.4

Q ss_pred             CCceecccccccccChHhHHHHHH
Q 048287           58 TNRFLCEICGKGFQRDQNLQLHRR   81 (365)
Q Consensus        58 ~k~~~C~~Cgk~F~~~~~L~~H~~   81 (365)
                      ...|-|..|+|.|.+...|+.|++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCEEecccccCccCCHHHHHHHHc
Confidence            356899999999999999999974

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.22  Score=26.72  Aligned_cols=18  Identities=17%  Similarity=0.359  Sum_probs=16.0

Q ss_pred             CCCccCChhHHHHHHHHh
Q 048287          168 CGTVFSRRDSFITHRAFC  185 (365)
Q Consensus       168 Cgk~F~~~~~L~~H~~~h  185 (365)
                      |.|.|...+.+++|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            999999999999998776

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.48  E-value=0.2  Score=28.54  Aligned_cols=27  Identities=15%  Similarity=0.441  Sum_probs=23.1

Q ss_pred             CCCceecccccccccChHhHHHHHHhc
Q 048287           57 ATNRFLCEICGKGFQRDQNLQLHRRGH   83 (365)
Q Consensus        57 ~~k~~~C~~Cgk~F~~~~~L~~H~~~H   83 (365)
                      ++..|.|.+|.+.|...+++.+|--+-
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhh
Confidence            356799999999999999999996443

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.22  E-value=0.41  Score=25.78  Aligned_cols=22  Identities=36%  Similarity=0.910  Sum_probs=17.5

Q ss_pred             ecc---CCCccCChhHHHHHHHHhh
Q 048287          165 KCD---CGTVFSRRDSFITHRAFCD  186 (365)
Q Consensus       165 ~C~---Cgk~F~~~~~L~~H~~~h~  186 (365)
                      .|+   |++.|+.+..|.-|.+.-|
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHH
Confidence            475   9999999999988877643

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.41  E-value=0.47  Score=31.39  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=25.2

Q ss_pred             CCCCceecccccccccChHhHHHHHHhcCCCcccccccccccCCceeeCCCC
Q 048287           56 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEK  107 (365)
Q Consensus        56 ~~~k~~~C~~Cgk~F~~~~~L~~H~~~H~~~~~~~~~~~~~~~~k~~~C~~C  107 (365)
                      ....-|+|+.|++.|.....++.   .-.             ....|.|..|
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~L---~d~-------------~~~~F~C~~C   45 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQL---FDP-------------MTGTFRCTFC   45 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHHH---EET-------------TTTEEBCSSS
T ss_pred             ccCCceECCCCCCCcchhhHHHh---cCc-------------CCCeEEecCC
Confidence            34567999999999987665543   221             4567889888