BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048288
(732 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/124 (83%), Positives = 112/124 (90%)
Query: 499 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGR 558
VRRVPLF NMDERLLDAICERLKP L TE + +VREGDPV+EML IIRGRLESVTTDGGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 559 TGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAG 618
+GFYNR LLKEGDFCG+ELLTWALDPKS +NLP STRTV+AL EVEAFAL A+ELKFVA
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 619 QFRR 622
QFRR
Sbjct: 128 QFRR 131
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+R+ Y ++ + + DEES++ L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRK 69
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + ++ +L+ + G ++REG +M I G + SV T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 129 K-----ETKLADGSYFGE 141
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+++ Y ++ + + DE+S++ L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 135 K-----EMKLSDGSYFGE 147
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+++ Y ++ + + DE+S++ L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 132 K-----EMKLSDGSYFGE 144
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+++ Y ++ + + DE+S++ L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 132 K-----EMKLSDGSYFGE 144
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+++ Y ++ + + DE+S++ L LR +I C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 129
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 130 K-----EMKLSDGSYFGE 142
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+R+ Y ++ + + DEES++ L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRK 69
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + ++ +L+ + G ++REG +M I G + SV T G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 129 K-----ETKLADGSYFGE 141
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+++ Y ++ + + DE+S++ L LR I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 131
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 132 K-----EMKLSDGSYFGE 144
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D+R+++ Y ++ + + DEE+++ L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRY-QGKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +L+ + G ++REG +M I G +T
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSK 135
Query: 558 RTGFYNRGLLKEGDFCGE 575
L +G + GE
Sbjct: 136 EMK------LTDGSYFGE 147
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 8/143 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+++ Y ++ + + DE+S++ L LR +I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + A+ +LK + G ++REG +M I G + SV T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 133
Query: 558 RTGFYNRGLLKEGDFCGE-ELLT 579
+ L +G + GE LLT
Sbjct: 134 K-----EMKLSDGSYFGEISLLT 151
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+M LP D R+R+ Y ++ + + DEES++ L + LR +I
Sbjct: 17 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNXRK 75
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV +PLFAN D + ++ +L+ + G ++REG +M I G + SV T G
Sbjct: 76 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 135 K-----ETKLADGSYFGE 147
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 434 EMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRH 493
+ R K + E++M +R LP LR ++ Y +++ + DE + + + + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRY-RGKMFDERHIFREVSESIRQDVANY 67
Query: 494 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT 553
C +LV VP F D + + L+ + V++EG D M I +G ++ +
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 554 TDG 556
+DG
Sbjct: 128 SDG 130
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
K + EQ+ LP D R+++ Y ++ + + DE+S++ L LR +I C
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRY-QGKXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV PLFAN D + A +LK + G ++REG + I G + SV T G
Sbjct: 73 LVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHG-VVSVLTKGN 131
Query: 558 RTGFYNRGLLKEGDFCGE 575
+ L +G + GE
Sbjct: 132 K-----EXKLSDGSYFGE 144
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 3/167 (1%)
Query: 438 KRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLN 497
+ +D + ++ LP+ L +R+ W G+D L++ P +LR DI HL
Sbjct: 17 RTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKE 76
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
L+ ++PLF + L ++ +K S C G ++R+GD + + + G +E V D
Sbjct: 77 LL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSME-VLKDNT 134
Query: 558 RTGFYNRG-LLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEV 603
+G L+ E+++ + K+ T L +++ L EV
Sbjct: 135 VLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREV 181
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 476 ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREG 535
E ++Q PKD+R DI HL + + P F + L A+ + C G + G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 536 DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTR 595
+ VD + ++ G LE + D +L +GD G+ + W K +T L S
Sbjct: 66 ESVDSLCFVVSGSLEVIQDDE------VVAILGKGDVFGD--VFW----KEAT-LAQSCA 112
Query: 596 TVRALAEVEAFALKAEELKFV 616
VRAL + +K + L+ V
Sbjct: 113 NVRALTYCDLHVIKRDALQKV 133
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDG 556
LV VPLF + +L I L+ G + R G+P D M ++ G + T
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 285
Query: 557 GRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRAL 600
N L G F GE L +P+S+T +T ++ +L
Sbjct: 286 ------NPVELGPGAFFGEMALISG-EPRSATVSAATTVSLLSL 322
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDG 556
LV VPLF + +L I L+ G + R G+P D M ++ G + T
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 70
Query: 557 GRTGFYNRGLLKEGDFCGEELLTWALDPKSST 588
N L G F GE L +P+S+T
Sbjct: 71 ------NPVELGPGAFFGEMALISG-EPRSAT 95
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV VPLF + +L I L+ G + R G+P D M ++ G + T +
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 71
Query: 558 RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVA 617
G G F GE L + +P+S+T +T ++ +L + F + +A
Sbjct: 72 ELG--------PGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 121
Query: 618 GQFRR 622
FR+
Sbjct: 122 EIFRK 126
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV VPLF + +L I L+ G + R G+P D M ++ G + T +
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 75
Query: 558 RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVA 617
G G F GE L + +P+S+T +T ++ +L + F + +A
Sbjct: 76 ELG--------PGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 125
Query: 618 GQFRR 622
FR+
Sbjct: 126 EIFRK 130
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV VPLF + +L I L+ G + R G+P D M ++ G + T +
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 71
Query: 558 RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVA 617
G G F GE L + +P+S+T +T ++ +L + F + +A
Sbjct: 72 ELG--------PGAFFGEMALI-SGEPRSATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 121
Query: 618 GQFRR 622
FR+
Sbjct: 122 EIFRK 126
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDG 556
LV VPLF + +L I L+ G + R G+P D M ++ G + T
Sbjct: 13 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 70
Query: 557 GRTGFYNRGLLKEGDFCGEELLT----WALDPKSSTNLPL 592
N L G F GE L W+ ++T + L
Sbjct: 71 ------NPVELGPGAFFGEMALISGEPWSATVSAATTVSL 104
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGG 557
LV VPLF + +L I L+ G + R G+P D M ++ G + T +
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 73
Query: 558 RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVA 617
G G F GE L + +P+S+T +T ++ +L + F + +A
Sbjct: 74 ELG--------PGAFFGEMALI-SGEPESATVSAATTVSLLSLHSAD-FQMLCSSSPEIA 123
Query: 618 GQFRR 622
FR+
Sbjct: 124 EIFRK 128
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 472 GVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMD--ERLLDAICERLKPSLCTEGT 529
G+D +S + L R KR + + +V + ++D ERL + + L+P +G
Sbjct: 134 GIDRDSYRRILMGSTLR--KRKMYEEFLSKVSILESLDKWERL--TVADALEPVQFEDGQ 189
Query: 530 CVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSST 588
+V +G+P DE +I+ G + F G L D+ GE L PK++T
Sbjct: 190 KIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNR-PKAAT 247
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 472 GVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMD--ERLLDAICERLKPSLCTEGT 529
G+D +S + L R KR + + +V + ++D ERL + + L+P +G
Sbjct: 130 GIDRDSYRRILMGSTLR--KRKMYEEFLSKVSILESLDKWERL--TVADALEPVQFEDGQ 185
Query: 530 CVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGE 575
+V +G+P DE +I+ G + F G L D+ GE
Sbjct: 186 KIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGE 231
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 472 GVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMD--ERLLDAICERLKPSLCTEGT 529
G+D +S + L R KR + + +V + ++D ERL + + L+P +G
Sbjct: 132 GIDRDSYRRILMGSTLR--KRKMYEEFLSKVSILESLDKWERL--TVADALEPVQFEDGQ 187
Query: 530 CVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGE 575
+V +G+P DE +I+ G + F G L D+ GE
Sbjct: 188 KIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGE 233
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 474 DEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVR 533
D ES + D +R+ + C +++ LF N+D + + + + L EG V+
Sbjct: 126 DAESRIIHPKTDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVID 181
Query: 534 EGDPVDEMLLIIRGRLE-SVTTDG-GR-TGFY-NRGLLKE 569
+GD D +I RG + V DG GR G Y NRG E
Sbjct: 182 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGE 221
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 474 DEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVR 533
D ES + D +R+ + C +++ LF N+D + + + + L EG V+
Sbjct: 126 DAESRIIHPKTDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVID 181
Query: 534 EGDPVDEMLLIIRGRLE-SVTTDG-GR-TGFY-NRGLLKE 569
+GD D +I RG + V DG GR G Y NRG E
Sbjct: 182 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGE 221
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 474 DEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVR 533
+EE +S + D +R+ + + LF N+D + + + + L EG V+
Sbjct: 15 EEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVID 74
Query: 534 EGDPVDEMLLIIRGRLE-SVTTDG-GRT--GFYNRGLLKE 569
+GD D +I RG + V DG GR + NRG E
Sbjct: 75 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGE 114
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 474 DEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVR 533
D ES + D +R+ + C +++ LF N+D + + + + L EG V+
Sbjct: 25 DAESRIIHPKTDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVID 80
Query: 534 EGDPVDEMLLIIRGRLE-SVTTDG-GRT--GFYNRGLLKE 569
+GD D +I RG + V DG GR + NRG E
Sbjct: 81 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGE 120
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 474 DEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVR 533
D ES + D +R+ + C +++ LF N+D + + + + L EG V+
Sbjct: 15 DAESRIIHPKTDDQRNRLQEACKDIL----LFKNLDPEQMSQVLDAMFEKLVKEGEHVID 70
Query: 534 EGDPVDEMLLIIRGRLE-SVTTDG-GR-TGFY-NRGLLKE 569
+GD D +I RG + V DG GR G Y NRG E
Sbjct: 71 QGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGE 110
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLE-SVTTDG 556
++ R +F ++ + A+ ++L+P G V EG+P D + +II G+++
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 557 GRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601
GR ++ D GE + DP T+ + VRA++
Sbjct: 89 GRENLLT--IMGPSDMFGELSI---FDPGPRTSSATTITEVRAVS 128
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLE-SVTTDG 556
++ R +F ++ + A+ ++L+P G V EG+P D + +II G+++
Sbjct: 4 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 63
Query: 557 GRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601
GR ++ D GE + DP T+ + VRA++
Sbjct: 64 GRENLLT--IMGPSDMFGELSI---FDPGPRTSSATTITEVRAVS 103
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLE 550
++ R +F ++ + A+ ++L+P G V EG+P D + +II G+++
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVK 81
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLE-SVTTDG 556
++ R +F ++ + A+ ++L+P G V EG+P D + +II G+++
Sbjct: 5 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 64
Query: 557 GRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601
GR ++ D GE + DP T+ + VRA++
Sbjct: 65 GRENLLT--IMGPSDMFGELSI---FDPGPRTSSATTITEVRAVS 104
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLE-SVTTDG 556
++ R +F ++ + A+ ++L+P G V EG+P D + +II G+++
Sbjct: 7 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66
Query: 557 GRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601
GR ++ D GE + DP T+ + VRA++
Sbjct: 67 GRENLLT--IMGPSDMFGELSI---FDPGPRTSSATTITEVRAVS 106
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 490 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRL 549
IK + ++ VP F ++ E +L + + L+ + G ++R+G D +I +G++
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 550 ESVTTDGGRTGFYNRGLLKEGDFCGEELL 578
D L +GD+ GE+ L
Sbjct: 210 NVTREDSPNEDPVFLRTLGKGDWFGEKAL 238
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 549 LESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFAL 608
L ++ T GG + +N L +G C L TW P+ N P ++ ++ L V++ L
Sbjct: 145 LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN-PQTSSFLQVLVSVQSLIL 203
Query: 609 KAEELKFVAGQFRR-------LHSRQVQHTFRFYSQQW------RTWAACFIQATWRRRS 655
AE G R SR+ R + +W R + CF + +
Sbjct: 204 VAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFY 263
Query: 656 IRK----KQAEQRLKEVRERSDYREVG 678
+++ Q E+ + ++++ S + VG
Sbjct: 264 LKRVEIXAQCEEWIADIQQYSSDKRVG 290
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD 555
L +V ++ LF + + +C + ++ EGDP D +LLI+ G + +V D
Sbjct: 38 LEIVNKIKLFGDFSNEEVRYLCSYXQCYAAPRDCQLLTEGDPGDYLLLILTGEV-NVIKD 96
Query: 556 GGRTGFYNRGLLKEGDFCGE 575
G + G GE
Sbjct: 97 IPNKGIQTIAKVGAGAIIGE 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,785,597
Number of Sequences: 62578
Number of extensions: 829880
Number of successful extensions: 2062
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 50
length of query: 732
length of database: 14,973,337
effective HSP length: 106
effective length of query: 626
effective length of database: 8,340,069
effective search space: 5220883194
effective search space used: 5220883194
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)