Query 048288
Match_columns 732
No_of_seqs 587 out of 3152
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 3E-119 7E-124 1023.5 53.0 576 88-731 64-640 (727)
2 PLN03192 Voltage-dependent pot 100.0 2.4E-68 5.1E-73 641.2 55.1 478 63-634 23-500 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 5.7E-60 1.2E-64 501.3 38.7 426 109-628 4-431 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 5.2E-60 1.1E-64 504.1 28.2 457 89-625 205-663 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 7.5E-54 1.6E-58 459.1 32.0 420 91-622 217-643 (815)
6 PRK09392 ftrB transcriptional 99.6 1.2E-14 2.6E-19 150.2 16.7 132 496-638 6-137 (236)
7 PRK11753 DNA-binding transcrip 99.5 1.5E-12 3.3E-17 131.9 19.8 118 506-633 6-124 (211)
8 KOG3713 Voltage-gated K+ chann 99.5 1.1E-12 2.3E-17 142.7 18.7 194 143-432 240-437 (477)
9 cd00038 CAP_ED effector domain 99.5 9.2E-13 2E-17 118.2 12.9 111 504-625 1-112 (115)
10 PRK11161 fumarate/nitrate redu 99.4 6.2E-12 1.3E-16 129.9 17.7 123 499-633 15-139 (235)
11 PRK10402 DNA-binding transcrip 99.4 3E-12 6.6E-17 131.6 14.4 108 514-632 25-133 (226)
12 smart00100 cNMP Cyclic nucleot 99.4 6.8E-12 1.5E-16 113.1 14.5 114 504-628 1-117 (120)
13 PF00520 Ion_trans: Ion transp 99.4 2.7E-12 5.9E-17 127.5 12.7 192 147-421 1-200 (200)
14 PF00027 cNMP_binding: Cyclic 99.4 3.3E-12 7.1E-17 110.6 10.0 89 523-622 2-91 (91)
15 COG0664 Crp cAMP-binding prote 99.3 3.4E-11 7.4E-16 121.1 18.1 123 500-633 3-126 (214)
16 KOG1545 Voltage-gated shaker-l 99.3 2.6E-13 5.6E-18 140.3 0.4 58 374-431 395-452 (507)
17 TIGR03697 NtcA_cyano global ni 99.3 6.1E-11 1.3E-15 118.4 15.1 157 528-698 1-161 (193)
18 PRK09391 fixK transcriptional 99.3 1E-10 2.3E-15 120.6 15.3 162 515-696 33-195 (230)
19 PRK13918 CRP/FNR family transc 99.2 1.6E-10 3.5E-15 116.4 16.4 158 519-699 5-168 (202)
20 KOG0614 cGMP-dependent protein 99.2 2.8E-11 6E-16 131.1 8.2 130 493-631 268-398 (732)
21 PLN02868 acyl-CoA thioesterase 99.2 3.3E-10 7.2E-15 126.9 16.0 113 496-621 7-119 (413)
22 KOG1113 cAMP-dependent protein 99.1 1.4E-10 3E-15 121.2 9.0 121 495-630 120-240 (368)
23 KOG0614 cGMP-dependent protein 99.1 1.6E-10 3.6E-15 125.3 7.2 121 490-625 147-267 (732)
24 KOG1419 Voltage-gated K+ chann 99.1 2.5E-09 5.5E-14 116.8 15.1 90 368-464 265-354 (654)
25 COG2905 Predicted signal-trans 99.0 2.7E-09 5.8E-14 117.7 14.6 116 496-625 6-121 (610)
26 KOG1113 cAMP-dependent protein 98.8 1.4E-08 3.1E-13 106.3 8.7 118 491-622 234-351 (368)
27 PF07885 Ion_trans_2: Ion chan 98.8 4.2E-08 9.2E-13 83.6 10.2 55 372-426 24-78 (79)
28 KOG1420 Ca2+-activated K+ chan 98.6 6.8E-08 1.5E-12 105.5 6.0 138 370-515 286-428 (1103)
29 KOG4390 Voltage-gated A-type K 98.4 2.3E-08 4.9E-13 104.9 -2.3 179 142-425 226-413 (632)
30 KOG2968 Predicted esterase of 98.2 2.4E-06 5.2E-11 98.4 6.7 113 512-635 500-613 (1158)
31 PRK10537 voltage-gated potassi 97.8 0.00034 7.4E-09 77.7 15.6 54 372-425 168-221 (393)
32 PF08412 Ion_trans_N: Ion tran 97.8 1.2E-05 2.6E-10 67.5 2.9 39 87-125 32-70 (77)
33 KOG3684 Ca2+-activated K+ chan 97.8 0.0035 7.6E-08 68.5 21.3 92 369-468 284-375 (489)
34 KOG2968 Predicted esterase of 97.6 0.00024 5.3E-09 82.4 10.4 111 516-631 111-223 (1158)
35 PF01007 IRK: Inward rectifier 97.6 0.00025 5.4E-09 76.9 9.3 60 370-429 82-143 (336)
36 KOG1418 Tandem pore domain K+ 97.1 0.00088 1.9E-08 74.8 7.3 61 372-432 115-175 (433)
37 PRK11832 putative DNA-binding 97.1 0.012 2.6E-07 59.1 14.4 107 512-648 14-121 (207)
38 PF04831 Popeye: Popeye protei 96.9 0.036 7.8E-07 52.5 14.5 108 507-624 14-123 (153)
39 KOG2302 T-type voltage-gated C 96.3 0.19 4.1E-06 59.6 18.1 89 88-202 1101-1200(1956)
40 KOG3542 cAMP-regulated guanine 95.7 0.016 3.4E-07 65.7 5.7 114 494-621 278-392 (1283)
41 PLN03223 Polycystin cation cha 95.1 9.3 0.0002 48.0 26.6 66 96-165 1170-1235(1634)
42 KOG4404 Tandem pore domain K+ 94.8 0.01 2.2E-07 62.4 0.8 48 371-418 79-126 (350)
43 KOG3827 Inward rectifier K+ ch 94.7 0.19 4.2E-06 54.3 10.1 61 372-432 112-174 (400)
44 KOG4404 Tandem pore domain K+ 94.1 0.23 5E-06 52.5 8.9 56 372-427 186-249 (350)
45 KOG3193 K+ channel subunit [In 93.8 0.12 2.5E-06 57.6 6.2 40 374-413 219-258 (1087)
46 KOG3542 cAMP-regulated guanine 89.3 0.48 1E-05 54.2 4.9 105 483-610 23-127 (1283)
47 KOG1418 Tandem pore domain K+ 89.0 0.1 2.2E-06 58.1 -0.6 49 371-419 241-297 (433)
48 KOG3614 Ca2+/Mg2+-permeable ca 84.6 95 0.0021 39.5 20.8 69 185-256 852-920 (1381)
49 KOG3676 Ca2+-permeable cation 81.0 1.4E+02 0.0029 36.1 21.8 73 385-458 601-680 (782)
50 KOG2301 Voltage-gated Ca2+ cha 80.3 29 0.00062 45.4 15.0 115 141-290 870-985 (1592)
51 COG4709 Predicted membrane pro 74.0 16 0.00034 36.2 8.0 71 439-511 7-81 (195)
52 KOG0498 K+-channel ERG and rel 71.3 98 0.0021 37.4 15.3 42 480-521 371-417 (727)
53 PF07883 Cupin_2: Cupin domain 68.2 8.4 0.00018 31.1 4.2 45 523-574 3-48 (71)
54 TIGR03037 anthran_nbaC 3-hydro 67.9 12 0.00026 36.2 5.8 59 537-612 47-105 (159)
55 PF08006 DUF1700: Protein of u 67.7 30 0.00064 34.2 8.8 54 439-494 7-64 (181)
56 PRK13290 ectC L-ectoine syntha 67.6 30 0.00064 32.2 8.2 69 521-608 38-106 (125)
57 PRK13264 3-hydroxyanthranilate 59.5 19 0.00041 35.5 5.4 62 536-614 52-113 (177)
58 PF14377 DUF4414: Domain of un 55.2 20 0.00042 32.4 4.5 44 450-493 52-105 (108)
59 PF13314 DUF4083: Domain of un 50.1 78 0.0017 25.2 6.3 48 397-447 3-56 (58)
60 PF10011 DUF2254: Predicted me 46.6 97 0.0021 34.4 9.2 62 369-430 97-158 (371)
61 PF05899 Cupin_3: Protein of u 45.5 38 0.00083 28.2 4.5 43 524-574 13-55 (74)
62 PF00060 Lig_chan: Ligand-gate 45.5 20 0.00042 33.5 3.1 60 368-428 40-99 (148)
63 smart00835 Cupin_1 Cupin. This 45.3 56 0.0012 30.8 6.3 53 520-574 32-86 (146)
64 PF07697 7TMR-HDED: 7TM-HD ext 44.7 88 0.0019 31.4 8.0 58 481-539 147-207 (222)
65 KOG2302 T-type voltage-gated C 44.1 7.5E+02 0.016 31.1 22.9 58 103-169 80-140 (1956)
66 TIGR00870 trp transient-recept 41.6 7.2E+02 0.016 30.2 28.1 46 396-441 586-632 (743)
67 KOG2301 Voltage-gated Ca2+ cha 40.3 2.6E+02 0.0057 37.0 12.6 51 103-164 1158-1208(1592)
68 PLN03192 Voltage-dependent pot 38.2 8.6E+02 0.019 30.0 21.3 42 449-495 357-398 (823)
69 COG1917 Uncharacterized conser 37.1 71 0.0015 29.4 5.4 50 520-576 45-95 (131)
70 KOG3609 Receptor-activated Ca2 36.8 3.1E+02 0.0067 33.4 11.5 73 374-448 555-633 (822)
71 PF08016 PKD_channel: Polycyst 30.9 8E+02 0.017 27.5 14.1 19 187-205 234-253 (425)
72 PF14377 DUF4414: Domain of un 29.1 99 0.0022 27.8 4.8 48 450-497 8-68 (108)
73 COG0662 {ManC} Mannose-6-phosp 28.7 1.3E+02 0.0028 27.7 5.7 47 520-573 38-85 (127)
74 KOG4440 NMDA selective glutama 27.9 1.6E+02 0.0035 34.4 7.0 54 373-426 614-667 (993)
75 PF12973 Cupin_7: ChrR Cupin-l 27.8 1.7E+02 0.0037 25.1 5.9 64 519-607 25-88 (91)
76 KOG3599 Ca2+-modulated nonsele 26.5 1.3E+03 0.028 28.5 21.9 24 142-165 497-520 (798)
77 TIGR00769 AAA ADP/ATP carrier 26.3 1E+03 0.022 27.3 14.4 47 369-422 140-189 (472)
78 PF13623 SurA_N_2: SurA N-term 24.9 1.9E+02 0.0041 27.6 6.1 45 404-448 10-67 (145)
79 PF06249 EutQ: Ethanolamine ut 24.3 1.8E+02 0.0038 28.1 5.7 51 537-608 94-144 (152)
80 TIGR03404 bicupin_oxalic bicup 24.1 1.9E+02 0.0042 32.1 6.8 52 520-574 69-121 (367)
81 PF02037 SAP: SAP domain; Int 24.1 1.5E+02 0.0033 20.8 4.0 26 438-463 5-35 (35)
82 PF01484 Col_cuticle_N: Nemato 23.7 3.2E+02 0.007 20.6 6.7 42 401-442 8-49 (53)
83 PRK09108 type III secretion sy 22.8 2.3E+02 0.0051 31.2 7.1 69 394-462 174-242 (353)
84 KOG1054 Glutamate-gated AMPA-t 21.9 1.2E+02 0.0026 35.2 4.7 70 375-450 598-667 (897)
85 PRK04190 glucose-6-phosphate i 21.8 3.5E+02 0.0076 27.1 7.5 51 521-574 71-131 (191)
86 KOG1053 Glutamate-gated NMDA-t 21.3 1.4E+03 0.03 28.6 13.0 120 271-452 568-720 (1258)
87 COG1422 Predicted membrane pro 20.9 3.2E+02 0.0069 27.5 6.8 40 408-447 47-89 (201)
88 PF00190 Cupin_1: Cupin; Inte 20.4 2.1E+02 0.0045 26.9 5.4 54 520-574 36-95 (144)
89 PRK06771 hypothetical protein; 20.3 5.2E+02 0.011 22.8 7.2 60 399-461 2-61 (93)
90 COG5559 Uncharacterized conser 20.3 97 0.0021 24.7 2.5 19 476-494 5-23 (65)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3e-119 Score=1023.48 Aligned_cols=576 Identities=49% Similarity=0.814 Sum_probs=516.3
Q ss_pred CCCCeeecCCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccc
Q 048288 88 VSDKKIFDPQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTA 167 (732)
Q Consensus 88 ~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~ta 167 (732)
...++||+|+|++++.||++++++|+|+++++|++|||+..++...| +|..+...++++|+++|+||++||+++||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 34567999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eecCCCcccCCCeEeeCHHHHHHHHhhhhhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhh
Q 048288 168 YIAPSSRVFGRGELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFP 247 (732)
Q Consensus 168 y~~~ss~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~ 247 (732)
|++++|+ ++|.||++||+||+++||++|++|++|+|||++|.++ ...........|..+.++||+|||+|+++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~--~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~ 214 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI--GSTSLALESTILVGILLLQRLPRLRRVIP 214 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee--cccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 7999999999999999999999999999999999887 22223334447788889999999999999
Q ss_pred hHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccc
Q 048288 248 LISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFD 327 (732)
Q Consensus 248 l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~ 327 (732)
++.+++|..|++.+++|+++++++++|||++||.||+||+++++++..||+++
T Consensus 215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~--------------------------- 267 (727)
T KOG0498|consen 215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA--------------------------- 267 (727)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------------
Confidence 99999999999999999999999999999999999999999999999999753
Q ss_pred cccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHH
Q 048288 328 DWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVG 407 (732)
Q Consensus 328 ~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~ 407 (732)
+|+..... .-.|. +..|+||+|.+ +.+|++|+|||++||||+|||+.+|+|..|++|+|++|
T Consensus 268 tw~~~l~~--~~~~~----~~~~~fg~~s~------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~m 329 (727)
T KOG0498|consen 268 TWLGSLGR--LLSCY----NLSFTFGIYSL------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIM 329 (727)
T ss_pred cccccccc--ccccC----cccccccchhH------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHH
Confidence 33321100 11122 33478998754 55999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhH
Q 048288 408 VAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLR 487 (732)
Q Consensus 408 i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr 487 (732)
++|+++||++||||++++|+.+.|.++||.|++|+++||++|+||++||+||++|+||+|..++|+||+++|++||++||
T Consensus 330 i~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR 409 (727)
T KOG0498|consen 330 LFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLR 409 (727)
T ss_pred HHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeec
Q 048288 488 RDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLL 567 (732)
Q Consensus 488 ~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l 567 (732)
+||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|.+. ++..+
T Consensus 410 ~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~--~~~~L 487 (727)
T KOG0498|consen 410 RDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFF--VVAIL 487 (727)
T ss_pred HHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceE--EEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888544 48999
Q ss_pred CCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 048288 568 KEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFI 647 (732)
Q Consensus 568 ~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~ 647 (732)
++||+|||+.++|+++ .| +++||+|+|.|+++.|+++||++++++||++++++++|++|+|+++|++|++|++
T Consensus 488 ~~Gd~~GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~i 560 (727)
T KOG0498|consen 488 GPGDFFGEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFI 560 (727)
T ss_pred cCCCccchHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhH
Confidence 9999999887778764 33 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhhhccccccCCCCCCcchhhHHHHhHHHHHHhhh-ccccCCCCCCCCcccCCCCCCCCC
Q 048288 648 QATWRRRSIRKKQAEQRLKEVRERSDYREVGNGDAPSRLRATVMASRFAANALRG-HRRRASVPTSPPRRFLNLQKPSEP 726 (732)
Q Consensus 648 q~~~~~~~~R~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 726 (732)
|++|+++++| +....+..+++..+ ......+.+.+++++.+|++||+|++++ +.+. .+.++...++.++||.||
T Consensus 561 q~a~r~~~~~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p 635 (727)
T KOG0498|consen 561 QAAWRRHIKR-KGEEELALEEEESA--IRGDDRGSKSLLRAGILASRFAANGRPPLHTAA--SRGSSDCALLLLQKPADP 635 (727)
T ss_pred HHHHHHHHHh-hccchhhhhcchhh--hccccccchhhhhcccccccccccCCCcccccc--ccCccccccccCCCCCCC
Confidence 9999999999 66555555433221 1114556778999999999999999999 4332 233456678899999999
Q ss_pred CCCCC
Q 048288 727 DFNTD 731 (732)
Q Consensus 727 ~~~~~ 731 (732)
||+.+
T Consensus 636 ~f~~~ 640 (727)
T KOG0498|consen 636 DFSDA 640 (727)
T ss_pred Ccccc
Confidence 99864
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2.4e-68 Score=641.21 Aligned_cols=478 Identities=22% Similarity=0.316 Sum_probs=399.6
Q ss_pred CcccccccccccchhhhcccCCCccCCCCeeecCCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccch
Q 048288 63 SRGLFRFGESLRSAAAKAVIPKDLKVSDKKIFDPQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLG 142 (732)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~ 142 (732)
+..++++.+.+.+..+.+.+.++....++|||+|+++++++||.+++++++|+++++|+.++|... ...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~-----------~~~ 91 (823)
T PLN03192 23 SLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA-----------SPK 91 (823)
T ss_pred ceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC-----------CCC
Confidence 344445555555544445566666667899999999999999999999999999999999765311 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEeeCHHHHHHHHhhhhhHhHhhhccChhhHHhhhhccCCcch
Q 048288 143 SAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGYVD 222 (732)
Q Consensus 143 ~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~ 222 (732)
..+.+++.++|++|++||+++|+|||+++. .|.+|.||++|++||+++||++|++|++|++.+.... ... ..
T Consensus 92 ~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~--~~ 163 (823)
T PLN03192 92 RGLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGT--VK 163 (823)
T ss_pred CCeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCC--cc
Confidence 245678999999999999999999999986 4889999999999999999999999999998765422 111 11
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhc
Q 048288 223 VLSLKDAMQVNMLLQFFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICS 302 (732)
Q Consensus 223 ~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~ 302 (732)
......+|+++| +.|+.|+.+++.++++.... ...|...+..++..++++||+||+||+++...
T Consensus 164 ~~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~---------- 227 (823)
T PLN03192 164 LNLSYSLLGLLR----FWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY---------- 227 (823)
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------
Confidence 112233444444 45666667777777655432 22355556666666779999999999998310
Q ss_pred CCCCCCCCCCccccccCCCCccccccccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHH
Q 048288 303 ETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQ 382 (732)
Q Consensus 303 ~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~ 382 (732)
...+.+|+.... ++ ..+.+++.+|++|+||+++
T Consensus 228 --------------------~~~~~~Wi~~~~-------------~~--------------~~~~s~~~~Yi~slYwai~ 260 (823)
T PLN03192 228 --------------------PHQGKTWIGAVI-------------PN--------------FRETSLWIRYISAIYWSIT 260 (823)
T ss_pred --------------------CCCCCchHHHhh-------------hc--------------cccCcHHHHHHHHHHHHHH
Confidence 023468874310 00 1256899999999999999
Q ss_pred HhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 048288 383 NLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRY 462 (732)
Q Consensus 383 tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y 462 (732)
|||||||||++|.|..|++|++++|++|+++|||+||+|++++.+.+.+.++|+++++.+++||++++||++||+||++|
T Consensus 261 TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y 340 (823)
T PLN03192 261 TMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAY 340 (823)
T ss_pred HHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHhhCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEE
Q 048288 463 EHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEML 542 (732)
Q Consensus 463 ~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~my 542 (732)
++|+|+. ++.++++++++||++||.+|+.+++.+.++++++|++++++++.+++..++.+.|+|||.|+.+||+++++|
T Consensus 341 ~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY 419 (823)
T PLN03192 341 MCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVY 419 (823)
T ss_pred HHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEE
Confidence 9999985 568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHH
Q 048288 543 LIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRR 622 (732)
Q Consensus 543 fI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~ 622 (732)
||.+|.|++...++|++.+ +..+++|++|||.++ +.+.| ++.+++|.++|+++.|++++|.++++++|+
T Consensus 420 ~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~---l~~~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~ 488 (823)
T PLN03192 420 IVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGA---LCCRP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQE 488 (823)
T ss_pred EEEecEEEEEEecCCccee--eEEccCCCEecchHH---hcCCC------CCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence 9999999998777788887 889999999999988 66666 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 048288 623 LHSRQVQHTFRF 634 (732)
Q Consensus 623 l~~~~L~~~~r~ 634 (732)
....+++...+.
T Consensus 489 d~~~i~~~~l~~ 500 (823)
T PLN03192 489 DNVVILKNFLQH 500 (823)
T ss_pred HHHHHHHHHHHH
Confidence 888877776663
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-60 Score=501.29 Aligned_cols=426 Identities=22% Similarity=0.385 Sum_probs=351.3
Q ss_pred HHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEeeCHHHH
Q 048288 109 VLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELVVDPAMI 188 (732)
Q Consensus 109 li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~I 188 (732)
.+.++|++++++..+.|+.++. .....|..++++.|++|++||+++.||||++ .|.+|.|-.+.
T Consensus 4 s~~vLYN~~~li~r~~F~di~~---------~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl 67 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQS---------SYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKL 67 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHH
Confidence 3568899999999877776532 2345678899999999999999999999997 49999999999
Q ss_pred HHHHhhh-hhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHhhHHHHHhHHHH
Q 048288 189 ARRYLRH-HFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISELKKIAGVFAESTLAGA 267 (732)
Q Consensus 189 a~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~ 267 (732)
.+||+++ .|.+|++|++|++.++++. ++. .+.| +.||+|+++++.-+.++.+...... +--
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~-----~~~-----~~~r-------~nRllk~yRl~~F~~rTetrT~~Pn-~fr 129 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKD-----GSA-----SLER-------LNRLLKIYRLFEFFDRTETRTTYPN-AFR 129 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcC-----Ccc-----hHHH-------HHHHHHHHHHHHHHHHhccccCCch-HHH
Confidence 9999988 8999999999999988753 111 1223 2344445555555544443221111 222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccccccccccccccccCCCCCC
Q 048288 268 AYYLFWYM-FCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKCNPNSL 346 (732)
Q Consensus 268 ~~~ll~~~-l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~ 346 (732)
+.+|+.+. ++.||.||++|++|... +...++|.... + .
T Consensus 130 i~~lv~~~~ilfHWNaClYf~iS~~~------------------------------g~~~d~wvY~~---i--------~ 168 (536)
T KOG0500|consen 130 ISKLVHYCLILFHWNACLYFLISKAI------------------------------GFTTDDWVYPK---I--------N 168 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHhc------------------------------CccccccccCC---c--------c
Confidence 44555544 68999999999999521 12345585421 0 1
Q ss_pred CCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048288 347 NSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLT 426 (732)
Q Consensus 347 ~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~ 426 (732)
++.|.. -...++.++|++|+||+..||||+|. .-+|.+..|.+|.|+-.++|+++||.++|++++++.
T Consensus 169 d~~~~~-----------c~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVt 236 (536)
T KOG0500|consen 169 DPEFAT-----------CDAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVT 236 (536)
T ss_pred Cccccc-----------cchhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHH
Confidence 111110 11346999999999999999999995 356889999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHHHHHHHHHHhcCcccC
Q 048288 427 SLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFA 506 (732)
Q Consensus 427 ~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~ 506 (732)
+++....||+.+++.+++||++|++|..|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|+++++|.
T Consensus 237 nmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~ 316 (536)
T KOG0500|consen 237 NMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQ 316 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCC
Q 048288 507 NMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKS 586 (732)
Q Consensus 507 ~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p 586 (732)
.+++.++.++.-.+++..|.|||+|++.||.+.+||+|.+|.+++...+++++ ...+++|++|||.++++ +.+.
T Consensus 317 ~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g~- 390 (536)
T KOG0500|consen 317 DCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKGN- 390 (536)
T ss_pred hcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcCc-
Confidence 99999999999999999999999999999999999999999999987666554 46899999999999854 4332
Q ss_pred CCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHH
Q 048288 587 STNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQV 628 (732)
Q Consensus 587 ~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L 628 (732)
.+..+|+++|+++..+++++|+++|+-+++++||+-...++
T Consensus 391 -~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 391 -KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred -ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 24456999999999999999999999999999998665555
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-60 Score=504.08 Aligned_cols=457 Identities=21% Similarity=0.381 Sum_probs=378.0
Q ss_pred CCCeeecCCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccce
Q 048288 89 SDKKIFDPQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAY 168 (732)
Q Consensus 89 ~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay 168 (732)
.++-||-.++.|+-.||++++++.+|+++.+|+.++|---.. ....|.+++.++|++|++||+++|+|.|
T Consensus 205 TpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~----------~~vs~lvvDSiVDVIF~vDIvLNFHTTF 274 (971)
T KOG0501|consen 205 TPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQR----------NNVSWLVVDSIVDVIFFVDIVLNFHTTF 274 (971)
T ss_pred CCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccccc----------CceeEEEecchhhhhhhhhhhhhcceee
Confidence 446688899999999999999999999999999865432211 1345678999999999999999999999
Q ss_pred ecCCCcccCCCeEeeCHHHHHHHHhhhhhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 048288 169 IAPSSRVFGRGELVVDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPL 248 (732)
Q Consensus 169 ~~~ss~~~~~G~lV~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l 248 (732)
+.| .||+|.||+.|..+|+|+||+||++|++|++.+..+--. ....-.....|+ +.||+|+.++
T Consensus 275 VGP------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~---degI~SLFSaLK-------VVRLLRLGRV 338 (971)
T KOG0501|consen 275 VGP------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERD---DEGIGSLFSALK-------VVRLLRLGRV 338 (971)
T ss_pred ecC------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcc---cccHHHHHHHHH-------HHHHHHHHHH
Confidence 999 599999999999999999999999999999987653221 122333445565 4467777777
Q ss_pred HHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCcccccc
Q 048288 249 ISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDD 328 (732)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~ 328 (732)
.+++..+.. ...+..+..++.|+|++||+||+||.+|-.+- ....++ .-..++
T Consensus 339 aRKLD~YlE----YGAA~LvLLlC~y~lvAHWlACiWysIGd~ev---------------------~~~~~n--~i~~ds 391 (971)
T KOG0501|consen 339 ARKLDHYLE----YGAAVLVLLLCVYGLVAHWLACIWYSIGDYEV---------------------RDEMDN--TIQPDS 391 (971)
T ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhheeccchhe---------------------eccccc--ccccch
Confidence 777766553 33344456667899999999999999994221 000011 023467
Q ss_pred ccccccccccccCCCCCCCCCcchhhhHHhhhh-c-cccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHH
Q 048288 329 WKRANKEIFDDKCNPNSLNSEFNFGIYLQAIES-E-IHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAV 406 (732)
Q Consensus 329 Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~-~-~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i 406 (732)
|+-... ++...+|+|- +.+ + .+...+--.-|+.|+|+.++.|||||+|++.|.+..|++|++.+
T Consensus 392 WL~kLa---------~~~~tpY~~~-----~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~m 457 (971)
T KOG0501|consen 392 WLWKLA---------NDIGTPYNYN-----LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCM 457 (971)
T ss_pred HHHHHH---------hhcCCCceec-----cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHH
Confidence 864432 2334455553 111 1 12345677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhh
Q 048288 407 GVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDL 486 (732)
Q Consensus 407 ~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~L 486 (732)
||+|.++||-++|+|++++|.++.....|.+.+..+.+||+-.++|..|.+||.+|.--.|..++|+|.+.+|.-.|+++
T Consensus 458 Mii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDM 537 (971)
T KOG0501|consen 458 MIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDM 537 (971)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeee
Q 048288 487 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGL 566 (732)
Q Consensus 487 r~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~ 566 (732)
|.||+.|+.+...+.+|.|.-.++..+++++..++..+..|||.|++.||..|.++||++|.+++.+.++- +++
T Consensus 538 kADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------VAI 611 (971)
T KOG0501|consen 538 KADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------VAI 611 (971)
T ss_pred ccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------EEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999875532 799
Q ss_pred cCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 567 LKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 567 l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
++.||.||+.-. -- . .+..+.++|+|++.|.+..|.++.+.++++-|-.++.
T Consensus 612 LGKGDVFGD~FW--K~-~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFan 663 (971)
T KOG0501|consen 612 LGKGDVFGDEFW--KE-N----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFAN 663 (971)
T ss_pred eecCccchhHHh--hh-h----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 999999999843 11 1 1223678999999999999999999999987776554
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-54 Score=459.11 Aligned_cols=420 Identities=23% Similarity=0.392 Sum_probs=357.2
Q ss_pred CeeecCCC-hhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHH-hhccce
Q 048288 91 KKIFDPQD-RSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIF-QFHTAY 168 (732)
Q Consensus 91 ~~ii~P~s-~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l-~F~tay 168 (732)
+..|||++ +++..|-.++.++..++++++|+...||+....+ ...|.+.++++|++|++||++ +=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 56899998 9999999999999999999999999999975432 346889999999999999965 778888
Q ss_pred ecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHh-
Q 048288 169 IAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVF- 246 (732)
Q Consensus 169 ~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~- 246 (732)
+- .|.+|.|.+...+||+++ .|-+|++|++|+++++..+- .+.++| ++|++++.
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G----------~~p~wR-------~~R~lK~~s 343 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG----------FNPMWR-------ANRMLKYTS 343 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc----------cchhhh-------hhhHHHHHH
Confidence 75 499999999999999998 89999999999998876431 122334 23333332
Q ss_pred --hhHHHHHHHhhHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCc
Q 048288 247 --PLISELKKIAGVFAESTLAGAAYYLFWYM-FCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGY 323 (732)
Q Consensus 247 --~l~~~l~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~ 323 (732)
.++..++. ++.+ +++-.+..-..|| ...|+.+|++|..|-.. +
T Consensus 344 F~e~~~~Le~---i~s~-~y~~RV~rT~~YmlyilHinacvYY~~Sayq------------------------------g 389 (815)
T KOG0499|consen 344 FFEFNHHLES---IMSK-AYIYRVIRTTGYLLYILHINACVYYWASAYQ------------------------------G 389 (815)
T ss_pred HHHHHHHHHH---Hhcc-hhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc------------------------------c
Confidence 22333322 1222 2222222233444 47899999999998321 1
Q ss_pred cccccccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHH
Q 048288 324 QVFDDWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFS 403 (732)
Q Consensus 324 ~~~~~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~ 403 (732)
-+.+.|+.. .--..|++|+||+..|++|+| |+-.|.+..|++|.
T Consensus 390 lG~~rWVyd-----------------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~ 433 (815)
T KOG0499|consen 390 LGTTRWVYD-----------------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQ 433 (815)
T ss_pred cccceeEEc-----------------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHH
Confidence 345778632 124579999999999999999 88889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCC
Q 048288 404 IAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLP 483 (732)
Q Consensus 404 i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP 483 (732)
.+.-+.|++.||.+||.|-.++...+...++||..|+++-.||+..+||.+.+.|||.+|+|.|..++..||.++++.||
T Consensus 434 ~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP 513 (815)
T KOG0499|consen 434 LLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLP 513 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEee
Q 048288 484 KDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYN 563 (732)
Q Consensus 484 ~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~ 563 (732)
..|+.|++....-..+.++.+|++++.+.+..++-+++.+.|.|||+|++.||.+.+||+|..|.|.+....+|...
T Consensus 514 ~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V--- 590 (815)
T KOG0499|consen 514 TKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV--- 590 (815)
T ss_pred hhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777654
Q ss_pred eeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHH
Q 048288 564 RGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRR 622 (732)
Q Consensus 564 ~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~ 622 (732)
+..|++|.+|||++++ +..+.. +||++|+|.+.|.+++|+++|+.+++..||+
T Consensus 591 l~tL~~GsVFGEISLL-aigG~n-----RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 591 LVTLKAGSVFGEISLL-AIGGGN-----RRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred EEEecccceeeeeeee-eecCCC-----ccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 5899999999999874 344443 5999999999999999999999999999995
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.61 E-value=1.2e-14 Score=150.24 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=118.3
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeeh
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGE 575 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe 575 (732)
.+.++.+++|..++++.++.+....+.+.|++|+.|+++||+++.+|+|.+|.++++...+|++.+ +.++.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 467899999999999999999999999999999999999999999999999999997777777877 889999999999
Q ss_pred hhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhh
Q 048288 576 ELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQ 638 (732)
Q Consensus 576 ~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~ 638 (732)
.++ +++.| +..+++|+++|+++.|++++|..++.++|.+....++...+.+...
T Consensus 84 ~~~---~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~ 137 (236)
T PRK09392 84 AAV---VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGL 137 (236)
T ss_pred HHH---hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 987 66666 7899999999999999999999999999998877776665544333
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.49 E-value=1.5e-12 Score=131.94 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=102.8
Q ss_pred CCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCC
Q 048288 506 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDP 584 (732)
Q Consensus 506 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 584 (732)
+.++++.++.++..++.+.|++|++|+.+||+++.+|+|++|.++++. ..+|++.+ +..+.+|++||+..+ +.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhh---ccC
Confidence 468999999999999999999999999999999999999999999965 45688888 889999999999976 443
Q ss_pred CCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 585 KSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 585 ~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
.+ .+..+++|.++|+++.|++++|.+++.++|++....++...+
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 124 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR 124 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 32 167899999999999999999999999999887665554443
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.1e-12 Score=142.67 Aligned_cols=194 Identities=16% Similarity=0.311 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccC-Cc
Q 048288 143 SAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSG-GY 220 (732)
Q Consensus 143 ~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~-~~ 220 (732)
..+.+++.++-++|-+..+++|..+ |+ ..+++|+ --+||++|++||..=+....... +.
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~ 300 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESL 300 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchH
Confidence 4678899999999999999999654 32 2456665 56999999999965433221211 11
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHH--HHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 048288 221 VDVLSLKDAMQVNMLLQFFPRFFRVFPLISELK--KIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWK 298 (732)
Q Consensus 221 ~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~--~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~ 298 (732)
...-+....+|++| +.|++||++|.++-. ++.|.-.+...--....++..++.+-+++.+-|++=.+.
T Consensus 301 ~~l~~~~~vvrvlR----~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~------ 370 (477)
T KOG3713|consen 301 KELENAGLVVRVLR----VLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE------ 370 (477)
T ss_pred HHHhhhhhhHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------
Confidence 12222223344443 456666666665442 222221121111112222223356667777777753110
Q ss_pred hhhcCCCCCCCCCCccccccCCCCccccccccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHH
Q 048288 299 EICSETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFW 378 (732)
Q Consensus 299 ~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~sly 378 (732)
+ +++ +..--.|+|
T Consensus 371 -------------------------~----------------------~~~--------------------FtSIPa~~W 383 (477)
T KOG3713|consen 371 -------------------------P----------------------DTK--------------------FTSIPAGFW 383 (477)
T ss_pred -------------------------C----------------------CCC--------------------Cccccchhh
Confidence 0 011 112234899
Q ss_pred HHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048288 379 FGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL 432 (732)
Q Consensus 379 wal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 432 (732)
|+++|||||||||.+|.|...++.+...++.|+++.|+-|..|-+-+.....+.
T Consensus 384 WaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 384 WAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred eeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999998876666555444443
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.45 E-value=9.2e-13 Score=118.17 Aligned_cols=111 Identities=28% Similarity=0.562 Sum_probs=99.2
Q ss_pred ccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhc
Q 048288 504 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWAL 582 (732)
Q Consensus 504 lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l 582 (732)
+|..++++.+..+++.++...+.+|++|+.+|++.+.+|+|.+|.++++. ..+|++.+ +..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~ 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELAL---L 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHH---h
Confidence 47889999999999999999999999999999999999999999999954 45677777 789999999999986 4
Q ss_pred CCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 583 DPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 583 ~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
...+ +..+++|.++|+++.|+.++|..++.++|.+..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 4444 788999999999999999999999999997654
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.41 E-value=6.2e-12 Score=129.88 Aligned_cols=123 Identities=17% Similarity=0.280 Sum_probs=103.2
Q ss_pred HhcCcccCCccHHHHHHHHhcCee-EEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehh
Q 048288 499 VRRVPLFANMDERLLDAICERLKP-SLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEE 576 (732)
Q Consensus 499 L~~v~lF~~ls~~~l~~L~~~l~~-~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~ 576 (732)
+++.+.|..+++++++.|....+. +.|+||+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455566667999999999988864 68999999999999999999999999999764 5688888 7889999999987
Q ss_pred hhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 577 LLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 577 ~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
.+ +.+ + ...+++|+++|+++.|++++|++++.++|.+....++...+
T Consensus 93 ~~---~~~-~------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~ 139 (235)
T PRK11161 93 AI---GSG-Q------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG 139 (235)
T ss_pred cc---cCC-C------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH
Confidence 64 332 2 34689999999999999999999999999887766655443
No 11
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.40 E-value=3e-12 Score=131.60 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=94.5
Q ss_pred HHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCc
Q 048288 514 DAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPL 592 (732)
Q Consensus 514 ~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~ 592 (732)
.+|.+..+.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.||++||+.++ +.+.+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~---~~~~~------ 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIEL---IDKDH------ 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehh---hcCCC------
Confidence 4577778899999999999999999999999999999955 56788888 889999999999986 66665
Q ss_pred cccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 048288 593 STRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTF 632 (732)
Q Consensus 593 s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~ 632 (732)
++.+++|+++|+++.+++++|..++.++|.+....++...
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7899999999999999999999999999987666555444
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.39 E-value=6.8e-12 Score=113.06 Aligned_cols=114 Identities=25% Similarity=0.446 Sum_probs=99.9
Q ss_pred ccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehhhhhhhc
Q 048288 504 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEELLTWAL 582 (732)
Q Consensus 504 lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~~l~~~l 582 (732)
+|.+++++.++.++..++.+.+++|++|+++|++++.+|||.+|.++++.. .+|++.. +..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~ 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELAL---L 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhh---c
Confidence 478899999999999999999999999999999999999999999999654 5677777 789999999999987 4
Q ss_pred --CCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHH
Q 048288 583 --DPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQV 628 (732)
Q Consensus 583 --~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L 628 (732)
.+.+ ...+++|.++|+++.++.+++...+..+|.+..+.+
T Consensus 76 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 76 TNSRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred cCCCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 2233 678999999999999999999999999987655443
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.39 E-value=2.7e-12 Score=127.46 Aligned_cols=192 Identities=19% Similarity=0.308 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccCC-cchHH
Q 048288 147 TLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSGG-YVDVL 224 (732)
Q Consensus 147 ~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~-~~~~~ 224 (732)
+++.+.+++|.+|+++++.+.... .++|+++ |.++|+++++|..........+.. .....
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLL 62 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcChhhcccccccccccccccccccccccccceE
Confidence 378899999999999999876531 6679987 778999999999655442222110 00122
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCC
Q 048288 225 SLKDAMQVNMLLQFFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSET 304 (732)
Q Consensus 225 ~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~ 304 (732)
...+++|++| ++|++|..+..+.+ ..... .........+++++++.|+.||+++.+....+..|+.
T Consensus 63 ~~~~~l~~~R----~l~~~~~~~~~~~~---~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~------ 128 (200)
T PF00520_consen 63 RIFRLLRLLR----LLRLLRRFRSLRRL---LRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD------ 128 (200)
T ss_dssp HHHHHHHHHH----HHHHHHTTTSHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred EEEEeecccc----cccccccccccccc---ccccc-cccccccccccccccccccccchhheecccccccccc------
Confidence 3333333222 33444444433333 22222 2233345566677789999999999988443222110
Q ss_pred CCCCCCCCccccccCCCCccccccccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHh
Q 048288 305 EPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNL 384 (732)
Q Consensus 305 ~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tl 384 (732)
. .+- +.++ ....+..+.|..|+||.++++
T Consensus 129 ---------~-------------~~~--------------~~~~---------------~~~~~~f~~~~~s~~~~~~~~ 157 (200)
T PF00520_consen 129 ---------P-------------TWD--------------SEND---------------IYGYENFDSFGESLYWLFQTM 157 (200)
T ss_dssp ------------------------SS---------------------------------SSTHHHHSSHHHHHHHHHHHH
T ss_pred ---------c-------------ccc--------------cccc---------------ccccccccccccccccccccc
Confidence 0 000 0000 113356788999999999999
Q ss_pred hccCCCCCCCC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 048288 385 STLGQGLKTTT-----SPKEVIFS-IAVGVAGLVLLALLIGNM 421 (732)
Q Consensus 385 stvGygd~~~~-----~~~E~if~-i~i~i~G~~lfa~lIg~~ 421 (732)
++.|+|+..+. +..+.++. +++.+.+.++++++||+|
T Consensus 158 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 158 TGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999886 88999998 777777789999999986
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=3.3e-12 Score=110.63 Aligned_cols=89 Identities=28% Similarity=0.423 Sum_probs=79.1
Q ss_pred EEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcc
Q 048288 523 SLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD-GGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601 (732)
Q Consensus 523 ~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~-~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~ 601 (732)
+.|++|++|+++|++++.+|||++|.++++..+ +|+..+ +..+.+|++||+.++ +.+.+ +..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~---~~~~~------~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIEL---LTGKP------SPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHH---HHTSB------BSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceee---cCCCc------cEEEEEEcc
Confidence 689999999999999999999999999996554 565555 789999999999987 44445 789999999
Q ss_pred cceEEEeCHHHHHHHHHHcHH
Q 048288 602 EVEAFALKAEELKFVAGQFRR 622 (732)
Q Consensus 602 ~~ell~L~~~df~~ll~~~p~ 622 (732)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999994
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.35 E-value=3.4e-11 Score=121.14 Aligned_cols=123 Identities=24% Similarity=0.398 Sum_probs=104.7
Q ss_pred hcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhh
Q 048288 500 RRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELL 578 (732)
Q Consensus 500 ~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l 578 (732)
...+.|..++++....+......+.+++|++|+++||+++.+|+|.+|.++++. ..+|++.+ +.++++||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 345667667788888877889999999999999999999999999999999955 45688888 789999999999987
Q ss_pred hhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 579 TWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 579 ~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
+.+.| +..+++|+++|+++.+++++|..++.+.|.+...+++...+
T Consensus 81 ---~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 81 ---LGGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred ---hcCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 55445 78999999999999999999999887788777666655554
No 16
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.6e-13 Score=140.33 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 048288 374 FYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVR 431 (732)
Q Consensus 374 ~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 431 (732)
-.+|||+++|||||||||..|.+.+.++...+++|.|++-.|+-+..+.+-+.....|
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhr 452 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 452 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccceeec
Confidence 3489999999999999999999999999999999999999998776655544444333
No 17
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.28 E-value=6.1e-11 Score=118.39 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=109.2
Q ss_pred CCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEE
Q 048288 528 GTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAF 606 (732)
Q Consensus 528 ge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell 606 (732)
|+.|+++||+++.+|+|.+|.|+++. ..+|++.+ +.++.+|++||+.++ +.+.+. .+..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~---~~~~~~----~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSL---ITGHRS----DRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeee---ccCCCC----ccceEEEEecceEEE
Confidence 78999999999999999999999965 56689988 889999999999876 544430 134789999999999
Q ss_pred EeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh---hccccccCCCCCC
Q 048288 607 ALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSIRKKQAEQRLKEVRE---RSDYREVGNGDAP 683 (732)
Q Consensus 607 ~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~R~~~~~~~~~~ee~---~~~~~~~~~~~~~ 683 (732)
.+++++|+.++.++|.+...+++...+ ........+.........+| .....+...+.. ..+.....-.-++
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~R-la~~L~~l~~~~~~~~~~~~~~~~~~t~ 146 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----RILQTEMMIETLAHRDMGSR-LVSFLLILCRDFGVPGQRGVTIDLRLSH 146 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHhCCCCCCeEEecCCCCH
Confidence 999999999999999988877776554 44333333334455556666 333333322221 1111111233456
Q ss_pred cchhhHHHHhHHHHH
Q 048288 684 SRLRATVMASRFAAN 698 (732)
Q Consensus 684 ~~~~~~~~~~~~~~~ 698 (732)
..++..+.++|=..+
T Consensus 147 ~~iA~~lG~tretvs 161 (193)
T TIGR03697 147 QAIAEAIGSTRVTIT 161 (193)
T ss_pred HHHHHHhCCcHHHHH
Confidence 677776666665544
No 18
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.25 E-value=1e-10 Score=120.57 Aligned_cols=162 Identities=13% Similarity=0.034 Sum_probs=111.8
Q ss_pred HHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCcc
Q 048288 515 AICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLS 593 (732)
Q Consensus 515 ~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s 593 (732)
.++.....+.|++|++|+.+||+++.+|||++|.|+++. ..+|++.+ +.++.+|++||+.. ..+ +
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------~~~------~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------GST------H 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------CCc------C
Confidence 455667889999999999999999999999999999965 55788877 78999999999532 223 5
Q ss_pred ccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 048288 594 TRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSIRKKQAEQRLKEVRERSD 673 (732)
Q Consensus 594 ~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~R~~~~~~~~~~ee~~~~ 673 (732)
..+++|+++|+++.+++++|+.++.++|.+...+++.+.+... .....+........+.| .........++ ..+
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~----~~~~~~~~l~~~~~~~R-la~~Ll~l~~~-~g~ 172 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLR----HAQDHMLLLGRKTAMER-VAAFLLEMDER-LGG 172 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH----HHHHHHHHHcCCCHHHH-HHHHHHHHHHH-hCC
Confidence 6899999999999999999999999999988877776665332 22222333333444555 33322222221 110
Q ss_pred ccccCCCCCCcchhhHHHHhHHH
Q 048288 674 YREVGNGDAPSRLRATVMASRFA 696 (732)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~ 696 (732)
.....-.-++..++..+..+|-.
T Consensus 173 ~~~i~i~lt~~~IA~~lGisret 195 (230)
T PRK09391 173 AGMMALPMSRRDIADYLGLTIET 195 (230)
T ss_pred CCEEEecCCHHHHHHHHCCCHHH
Confidence 11111234555677666666554
No 19
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.25 E-value=1.6e-10 Score=116.35 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=108.0
Q ss_pred cCeeEEeCCCCEEEecCC--CCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCcccc
Q 048288 519 RLKPSLCTEGTCVVREGD--PVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTR 595 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd--~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~ 595 (732)
.++.+.|++|++|+++|| +++.+|+|++|.|+++. ..+|++.+ +..+.|||+||+..+ + ..+ ++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~---~-~~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEAL---A-GAE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHh---c-CCC------CCc
Confidence 467889999999999999 77999999999999965 56799988 889999999999754 3 233 678
Q ss_pred EEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh---hc
Q 048288 596 TVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSIRKKQAEQRLKEVRE---RS 672 (732)
Q Consensus 596 tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~R~~~~~~~~~~ee~---~~ 672 (732)
+++|+++|+++.|++++| .|++...+++...+...+. .+.+.........+| ....++...+.. ..
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~----~~~~~~l~~~~~~~R-la~~Ll~l~~~~~~~~~ 141 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARA----YESIYRLVGQRLKNR-IAAALLELSDTPLATQE 141 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHH----HHHHHHHHhCchHHH-HHHHHHHHHHHhCCCCC
Confidence 999999999999999987 4666666666665544333 233333345556666 333333322211 11
Q ss_pred cccccCCCCCCcchhhHHHHhHHHHHH
Q 048288 673 DYREVGNGDAPSRLRATVMASRFAANA 699 (732)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (732)
+.....-.-++..++..+..+|-..+-
T Consensus 142 ~~~~~~~~~t~~~iA~~lG~tretvsR 168 (202)
T PRK13918 142 DSGETMIYATHDELAAAVGSVRETVTK 168 (202)
T ss_pred CCCeEEecCCHHHHHHHhCccHHHHHH
Confidence 111112334566777777767765544
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.20 E-value=2.8e-11 Score=131.15 Aligned_cols=130 Identities=29% Similarity=0.489 Sum_probs=110.7
Q ss_pred HHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCe
Q 048288 493 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDF 572 (732)
Q Consensus 493 ~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~ 572 (732)
.-+.++|+.+|+|.+++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.+.-..+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 44678899999999999999999999999999999999999999999999999999999776655332223889999999
Q ss_pred eehhhhhhhcCCCCCCCCCccccEEEEccc-ceEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 048288 573 CGEELLTWALDPKSSTNLPLSTRTVRALAE-VEAFALKAEELKFVAGQFRRLHSRQVQHT 631 (732)
Q Consensus 573 fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~-~ell~L~~~df~~ll~~~p~l~~~~L~~~ 631 (732)
|||-++ +.... +++++.|.++ ++++.|+++.|..++....++..+.....
T Consensus 348 FGE~al---~~edv------RtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~ 398 (732)
T KOG0614|consen 348 FGERAL---LGEDV------RTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDE 398 (732)
T ss_pred hhHHHh---hccCc------cchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccch
Confidence 999998 44443 7899999988 99999999999999988877665444433
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.18 E-value=3.3e-10 Score=126.90 Aligned_cols=113 Identities=26% Similarity=0.371 Sum_probs=98.1
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeeh
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGE 575 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe 575 (732)
.+.++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+++.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456889999999999999999999999999999999999999999999999999996654333555 788999999997
Q ss_pred hhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcH
Q 048288 576 ELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFR 621 (732)
Q Consensus 576 ~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p 621 (732)
. + .+.+ +..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGSV------HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCCC------cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 3 3343 78999999999999999999988776654
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=1.4e-10 Score=121.17 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=104.5
Q ss_pred HHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 495 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 495 ~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..+.+++.-+|++++++.+..+.+.|..+.++.|+.|++|||.++.+|+|.+|.+.++.. |+- +..+.||..||
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFG 193 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFG 193 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchh
Confidence 356788889999999999999999999999999999999999999999999999999875 222 67899999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQH 630 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~ 630 (732)
|.++ +.+.| +.+|+.|.+++.+|.|++..|.+++-.......++...
T Consensus 194 ElAL---myn~P------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~ 240 (368)
T KOG1113|consen 194 ELAL---MYNPP------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEP 240 (368)
T ss_pred hhHh---hhCCC------cccceeeccccceEEEeeceeEEEeeccchhhhhhhhh
Confidence 9998 45555 89999999999999999999998876665444444433
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-10 Score=125.28 Aligned_cols=121 Identities=20% Similarity=0.346 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCC
Q 048288 490 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKE 569 (732)
Q Consensus 490 I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~ 569 (732)
-..++..+.+++..+.++++...+.++..+|.++.|.+|++|++|||+++++|.+..|.+.+.. +|+- ++.+++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~~ 220 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMGA 220 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccCC
Confidence 3456667888888999999999999999999999999999999999999999999999999864 3442 789999
Q ss_pred CCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 570 GDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 570 Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
|..|||.+++ .+-+ |+++|+|+++|.+|+|+++-|+.++.....-+.
T Consensus 221 gtvFGELAIL---ynct------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~ 267 (732)
T KOG0614|consen 221 GTVFGELAIL---YNCT------RTASVRALTDVRLWAIDREVFQAIMMRTGLERH 267 (732)
T ss_pred chhhhHHHHH---hCCc------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999984 4444 899999999999999999999999977764433
No 24
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.05 E-value=2.5e-09 Score=116.84 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=74.6
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 048288 368 NFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMH 447 (732)
Q Consensus 368 ~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~ 447 (732)
+-+..|-.|+|||+.|++|+||||.+|.+....+++....++|+.+||+--|.+++=+.-.-+ |+.|+ ++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~RQ-----KHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHRQ-----KHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHHH-----HHHHh
Confidence 346678889999999999999999999999999999999999999999999888876644322 22222 37778
Q ss_pred hCCCCHHHHHHHHHHHH
Q 048288 448 HRWLPQDLRERVRRYEH 464 (732)
Q Consensus 448 ~~~lp~~L~~rVr~y~~ 464 (732)
.++.-..|.+-..|||.
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 88888899988888876
No 25
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.04 E-value=2.7e-09 Score=117.73 Aligned_cols=116 Identities=18% Similarity=0.306 Sum_probs=103.2
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeeh
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGE 575 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe 575 (732)
.+++.++|.|..++++.+++|...+....|.+||.|+..|.|.+.+|+|.+|.|+++.. +|+ + +..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~-~g~--v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD-GGE--V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC-CCe--e--eeeeccCccccc
Confidence 56789999999999999999999999999999999999999999999999999998754 444 3 789999999999
Q ss_pred hhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 576 ELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 576 ~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
.++ ++..+ ....+.|.+|+.+|.|+++.|.+++.++|.++.
T Consensus 81 ~~l---~~~~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSL---FTELN------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhh---cccCC------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 987 44443 456788889999999999999999999998664
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=1.4e-08 Score=106.31 Aligned_cols=118 Identities=21% Similarity=0.351 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCC
Q 048288 491 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEG 570 (732)
Q Consensus 491 ~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~G 570 (732)
++.++.+.|+.+|+++.++..+...++..+.++.|.+|+.|+.+|++++.+|+|.+|.|.+....+| .. + .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~--v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VE--V-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eE--E-Eechh
Confidence 4567899999999999999999999999999999999999999999999999999999998654455 22 4 89999
Q ss_pred CeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHH
Q 048288 571 DFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRR 622 (732)
Q Consensus 571 d~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~ 622 (732)
|+|||.++ +...| +.++|.|.++..+..++++.|+.|+.-.-+
T Consensus 309 dyfge~al---~~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 309 DYFGELAL---LKNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhcchHHH---Hhhch------hhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 99999988 66666 889999999999999999999999976654
No 27
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.79 E-value=4.2e-08 Score=83.61 Aligned_cols=55 Identities=27% Similarity=0.527 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLT 426 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~ 426 (732)
.|..++||++.+++|+||||+.|.+..+++++++.+++|+.++++.++.+.+.++
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677999999999999999999999999999999999999999999999998875
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.57 E-value=6.8e-08 Score=105.50 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Q 048288 370 FSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHR 449 (732)
Q Consensus 370 ~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~ 449 (732)
.-.|..|.|+-++||+||||||+...+....+|.++.++.|+.+||-.+..+..++.+..+---||+..-. -+|.
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeE
Confidence 45688999999999999999999999999999999999999999999999999998876554444432110 0111
Q ss_pred CCCHH-HHHHHHHHHHHHHhhh-cCCCh-HHHHhhCChhhHHHHHHHHHHHHHhcCcccCC--ccHHHHHH
Q 048288 450 WLPQD-LRERVRRYEHFKWLET-RGVDE-ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFAN--MDERLLDA 515 (732)
Q Consensus 450 ~lp~~-L~~rVr~y~~y~w~~~-~~~~e-~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~--ls~~~l~~ 515 (732)
-+-.+ .-+.|-.|++---.+. ..+|- --+|...||+|.-+ -++.....++.+|.+ |++-.+..
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 11111 1233333433222222 22443 34578899988655 344555677888863 55555443
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.42 E-value=2.3e-08 Score=104.88 Aligned_cols=179 Identities=22% Similarity=0.369 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccC--
Q 048288 142 GSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSG-- 218 (732)
Q Consensus 142 ~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~-- 218 (732)
...++.+++.+-++|-...+++...| |+ ..|++++ -=+||+++++|+.. -++.+.
T Consensus 226 ~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYi---gLv~t~N~ 283 (632)
T KOG4390|consen 226 PVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYI---GLVMTDNE 283 (632)
T ss_pred ceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhhe---EEEecCCc
Confidence 34556677777788888888887654 32 2467777 56899999999843 234443
Q ss_pred CcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHH--HHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 048288 219 GYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISELK--KIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFC 296 (732)
Q Consensus 219 ~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~--~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~c 296 (732)
+-+..+.+.+.+ |++||+++.+.-+ +..|+-.+.-...+-+.|+....++-++|.+.|+.-..
T Consensus 284 DVSGaFVTLRVF----------RVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg----- 348 (632)
T KOG4390|consen 284 DVSGAFVTLRVF----------RVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG----- 348 (632)
T ss_pred cccceeEEEEee----------eeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 333444333333 3444444333211 22333222212222344444445556666665553210
Q ss_pred HhhhhcCCCCCCCCCCccccccCCCCccccccccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHH
Q 048288 297 WKEICSETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYC 376 (732)
Q Consensus 297 w~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~s 376 (732)
. +.+-+...-.+
T Consensus 349 ---------------------------~-----------------------------------------~at~FTsIPaa 360 (632)
T KOG4390|consen 349 ---------------------------S-----------------------------------------SATKFTSIPAA 360 (632)
T ss_pred ---------------------------c-----------------------------------------cccccccCcHh
Confidence 0 11112223358
Q ss_pred HHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 048288 377 FWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLI----GNMQTYL 425 (732)
Q Consensus 377 lywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lI----g~~~~~l 425 (732)
||+.++||||+||||..|.+...++|..+..+.|+++.|+-+ .|.+.+.
T Consensus 361 FWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 361 FWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred HhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 999999999999999999999999999999999999888754 5555554
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.18 E-value=2.4e-06 Score=98.43 Aligned_cols=113 Identities=24% Similarity=0.367 Sum_probs=98.1
Q ss_pred HHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCC
Q 048288 512 LLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNL 590 (732)
Q Consensus 512 ~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~ 590 (732)
++..+-..+.-..+.+|+.++++||.+|.+|+|+.|.++.... .+|+..+ +..++.||.+|+... +..+|
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~---- 570 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQP---- 570 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCC----
Confidence 4455555678889999999999999999999999999998544 4566556 789999999999987 67776
Q ss_pred CccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 591 PLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 591 p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
+..|+.|+-++++..||..-|..+..+||.+..++.+-.++.+
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999888888888777
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.84 E-value=0.00034 Score=77.68 Aligned_cols=54 Identities=24% Similarity=0.395 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYL 425 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l 425 (732)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999999999999998887644
No 32
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.82 E-value=1.2e-05 Score=67.45 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=34.9
Q ss_pred cCCCCeeecCCChhHHHHHHHHHHHHHHHHhhhchhhhh
Q 048288 87 KVSDKKIFDPQDRSLLLWNRLFVLSCIISVSIDPVFFYL 125 (732)
Q Consensus 87 ~~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~ 125 (732)
.+...+||||.|+|+.+||.+++++++++++++|+.++|
T Consensus 32 ~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 32 RSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred hcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 344578999999999999999999999999999998654
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.0035 Score=68.55 Aligned_cols=92 Identities=14% Similarity=0.255 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 048288 369 FFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHH 448 (732)
Q Consensus 369 ~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~ 448 (732)
....|+.++|.-..|.-++||||+.|.+......+++..++|.++.|.+|+-++.-+ |...--+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999887544 333334567788888
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 048288 449 RWLPQDLRERVRRYEHFKWL 468 (732)
Q Consensus 449 ~~lp~~L~~rVr~y~~y~w~ 468 (732)
.+|-.++++-..+=.+..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877777777776666665
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.63 E-value=0.00024 Score=82.45 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=90.1
Q ss_pred HHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehh-hhhhhcCCCCCCCCCcc
Q 048288 516 ICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEE-LLTWALDPKSSTNLPLS 593 (732)
Q Consensus 516 L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~-~l~~~l~~~p~~~~p~s 593 (732)
++.+++...+..|++|++.|++.+.+|.+.+|.+.+.. ..+|++.. +....+|+-|... ++ ++..|....+..
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSi---Ld~l~~~ps~~~ 185 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSI---LDSLPGFPSLSR 185 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHH---HHhccCCCcccc
Confidence 34778888999999999999999999999999999955 44688888 8899999888776 44 443333333457
Q ss_pred ccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 048288 594 TRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHT 631 (732)
Q Consensus 594 ~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~ 631 (732)
+..++|.++|.+..++.+.|..+...+|+-..+.+|-.
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvv 223 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVV 223 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHH
Confidence 88899999999999999999999999997555555543
No 35
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.58 E-value=0.00025 Score=76.89 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048288 370 FSKFFYCFWFGLQNLSTLGQGL--KTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLT 429 (732)
Q Consensus 370 ~~~Y~~slywal~tlstvGygd--~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~ 429 (732)
...+..+|++++.|++|+|||. .+|....-.++.++=+++|+++.|+++|-+-+=+..-.
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3467889999999999999998 57888888888999999999999999998876555433
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.00088 Score=74.83 Aligned_cols=61 Identities=20% Similarity=0.440 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL 432 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 432 (732)
.+..++|++.+++||+|||++.|.+...++|+|+.+++|+-++..++++++..+...-.+.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999999987765443
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.12 E-value=0.012 Score=59.08 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=80.6
Q ss_pred HHHHHHhcCeeEEeCCCCEE-EecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCC
Q 048288 512 LLDAICERLKPSLCTEGTCV-VREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNL 590 (732)
Q Consensus 512 ~l~~L~~~l~~~~~~kge~I-~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~ 590 (732)
..+.+....++..+++|..+ ..+.+..+.++++.+|.+.+. ..+| .. +....+..+||-... +.+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC----
Confidence 45667777888899999997 444444467999999999995 3344 33 567888889997653 33332
Q ss_pred CccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 048288 591 PLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQ 648 (732)
Q Consensus 591 p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q 648 (732)
..+.++|.++|+++.++.+++.++++++. -|+.++..++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~----------------LW~~~~~~l~~ 121 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ----------------LWRDAFYWLAW 121 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc----------------hHHHHHHHHHH
Confidence 35789999999999999999999999885 67777666654
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.90 E-value=0.036 Score=52.46 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=83.0
Q ss_pred CccHHHHHHHHhc-CeeEEeCCCCEEEecC-CCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCC
Q 048288 507 NMDERLLDAICER-LKPSLCTEGTCVVREG-DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDP 584 (732)
Q Consensus 507 ~ls~~~l~~L~~~-l~~~~~~kge~I~~eG-d~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 584 (732)
+++....+.|+.+ .+.....+|+.-.-|| .+.|.+-++++|++++... |+- +..+.|.+|...-.. ...
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW---~s~ 84 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEW---ESL 84 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhh---hcc
Confidence 4678888888877 6778999999988888 4678999999999998653 432 677788888776654 222
Q ss_pred CCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHH
Q 048288 585 KSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLH 624 (732)
Q Consensus 585 ~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~ 624 (732)
+++.. -.-..|+.|.++|..+..+++.+..++...|-++
T Consensus 85 ~~s~~-~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 85 RPSED-DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred ccCCC-CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 11111 1257899999999999999999999999998543
No 39
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.31 E-value=0.19 Score=59.58 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=54.2
Q ss_pred CCCCeeecCCChhHHHH---------HHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHH
Q 048288 88 VSDKKIFDPQDRSLLLW---------NRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLI 158 (732)
Q Consensus 88 ~~~~~ii~P~s~~~~~W---------~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~l 158 (732)
.|.+.+|.|+++|+..- |.++++.++++++.+-+.- |.+++ ...-..++++-+.++..+|++
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer--p~i~~-------~s~EriFltlsnyIFtaIfV~ 1171 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER--PAIVE-------GSTERIFLTLSNYIFTAIFVV 1171 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc--ccccc-------CcceEEEEEecchHHHHHHHH
Confidence 35677999999997654 4455555555555554431 11111 111123445566899999999
Q ss_pred HHHHhhc-cceecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhh
Q 048288 159 HMIFQFH-TAYIAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFL 202 (732)
Q Consensus 159 Di~l~F~-tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDll 202 (732)
.+.++-. .|.+- || .-|+++ |-.+|.+
T Consensus 1172 Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1172 EMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 9999865 35432 44 368886 7777754
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.69 E-value=0.016 Score=65.69 Aligned_cols=114 Identities=22% Similarity=0.341 Sum_probs=87.3
Q ss_pred HHHHHHhcCcccCCccHHHHHHHHhcCeeEE-eCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCe
Q 048288 494 LCLNLVRRVPLFANMDERLLDAICERLKPSL-CTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDF 572 (732)
Q Consensus 494 l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~-~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~ 572 (732)
..+++..+.|-|++|+-....++|..|.... =..|.+|+..|+.-|..+.|+.|+|++...++.+ ..+.-|+-
T Consensus 278 qLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnS 351 (1283)
T KOG3542|consen 278 QLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNS 351 (1283)
T ss_pred HHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccc
Confidence 3468888999999999999999998876544 4789999999999999999999999998877654 45777999
Q ss_pred eehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcH
Q 048288 573 CGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFR 621 (732)
Q Consensus 573 fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p 621 (732)
||...- .+.+-- --.--.-+.||+..+|...|+-.++.+-.
T Consensus 352 FG~~PT---~dkqym-----~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 352 FGAEPT---PDKQYM-----IGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred cCCCCC---cchhhh-----hhhhheecccceEEEeehhhHHHHHHHHH
Confidence 996532 111100 00112346899999999999999987654
No 41
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.14 E-value=9.3 Score=48.00 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhc
Q 048288 96 PQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFH 165 (732)
Q Consensus 96 P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~ 165 (732)
+.+-+...-+.++++.++|.++.--..++-........+-+ +..+|.++++++-++-+.=|++-|.
T Consensus 1170 t~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laY----FKSfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1170 YEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAY----FLSGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhH----hccchHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666555443322110000001111 3457888888888777777777654
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.79 E-value=0.01 Score=62.36 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 048288 371 SKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLI 418 (732)
Q Consensus 371 ~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lI 418 (732)
=++.-|||++.+.+||+|||-.+|.|.+.++|+|+..++|+-+--..+
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 367779999999999999999999999999999999999865544433
No 43
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.19 Score=54.31 Aligned_cols=61 Identities=20% Similarity=0.496 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhccCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLK--TTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL 432 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~--~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 432 (732)
.+..||-+++-|=+|+|||-- |...+.-++..++=+|+|+++-|+++|.|-.=+..-.+|.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRA 174 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRA 174 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 345577788999999999964 4455677777788889999999999998876555444443
No 44
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.23 Score=52.51 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCh-------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSP-------KEV-IFSIAVGVAGLVLLALLIGNMQTYLTS 427 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~-------~E~-if~i~i~i~G~~lfa~lIg~~~~~l~~ 427 (732)
.|+.|+|+.+.|+||+|+||..+--. .++ .++.+.+++|+.+++-+++-+.--+..
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t 249 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMT 249 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999876432 333 466667778988888777665544433
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=93.79 E-value=0.12 Score=57.62 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHH
Q 048288 374 FYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVL 413 (732)
Q Consensus 374 ~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~l 413 (732)
+.|+|+.++|.+||||||..|....-.+..++++.+.+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 3478899999999999999999877776665555444444
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.31 E-value=0.48 Score=54.21 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=79.2
Q ss_pred ChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEe
Q 048288 483 PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFY 562 (732)
Q Consensus 483 P~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~ 562 (732)
|+.|+.-.........|.+...|.++-..-+.++|...+...++...++++.||.+...|++++|.|-+. |
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g----- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G----- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-----
Confidence 4444444443333456788899999999999999999999999999999999999999999999998653 2
Q ss_pred eeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCH
Q 048288 563 NRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKA 610 (732)
Q Consensus 563 ~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~ 610 (732)
..+-|-..||-- .++. ++.++-.++++|..+++.
T Consensus 94 --qi~mp~~~fgkr------~g~~------r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKR------TGQN------RTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred --ceecCccccccc------cccc------cccceeeecccceeeeec
Confidence 133444456643 1222 778888899999988854
No 47
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=88.97 E-value=0.1 Score=58.14 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCChhhH--------HHHHHHHHHHHHHHHHHHH
Q 048288 371 SKFFYCFWFGLQNLSTLGQGLKTTTSPKEV--------IFSIAVGVAGLVLLALLIG 419 (732)
Q Consensus 371 ~~Y~~slywal~tlstvGygd~~~~~~~E~--------if~i~i~i~G~~lfa~lIg 419 (732)
--|+.|+|+++.++||+|+||+.|.+.... .+..+..++|+..++...-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 467789999999999999999999998766 6788888889888888773
No 48
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=84.62 E-value=95 Score=39.49 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHh
Q 048288 185 PAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISELKKIA 256 (732)
Q Consensus 185 ~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~ 256 (732)
+++++.-+-.-|+.+|+++++=|..-+..-..|...-..-+..-.+-++.+ ..||+.++.+.+.+--..
T Consensus 852 ~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~---t~rLl~~f~V~~~lGPyI 920 (1381)
T KOG3614|consen 852 PQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILF---TLRLLHYFTVSKQLGPYI 920 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHH---HHHHhhheeeccccCchh
Confidence 455555555569999999998775544443444211111111111222211 457888888777665443
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.04 E-value=1.4e+02 Score=36.12 Aligned_cols=73 Identities=23% Similarity=0.326 Sum_probs=57.0
Q ss_pred hccCCCCCCCC------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 048288 385 STLGQGLKTTT------SPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL-EEMRIKRRDSEQWMHHRWLPQDLRE 457 (732)
Q Consensus 385 stvGygd~~~~------~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~-~e~r~k~~~~~~~m~~~~lp~~L~~ 457 (732)
.|+|+||.... ...-++|.+++.++-++++-++|+-|++......... ++|+.+.-.+ --|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 47899987543 2456778888888889999999999999988877666 7888766555 45667899999988
Q ss_pred H
Q 048288 458 R 458 (732)
Q Consensus 458 r 458 (732)
+
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 7
No 50
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.29 E-value=29 Score=45.42 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccCC
Q 048288 141 LGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSGG 219 (732)
Q Consensus 141 ~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~ 219 (732)
....+...+.+.-.+|.+.|+++... | |... |+++ |.++|++-++-.-.-..+ .
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-~----------Gf~~---------y~rn~w~~lDf~Vv~vslisl~~-----~ 924 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-Y----------GFFF---------YFRNAWNWLDFVVVIVSLISLIA-----S 924 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-h----------HHHH---------HHhhHHhhhhHHHhhhHHHHHHH-----h
Confidence 35577789999999999999998743 2 3211 9988 999999765543111111 1
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048288 220 YVDVLSLKDAMQVNMLLQFFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTV 290 (732)
Q Consensus 220 ~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~ 290 (732)
.. .....+.||.+| .+|.+|....+..++ .++ .+..+++.+++..++..+++=.++-.+|+
T Consensus 925 ~~-~~~~ik~lr~lR----aLRPLR~i~r~~~mr---~Vv--~~l~~a~~~I~nv~lV~li~~fiFai~gv 985 (1592)
T KOG2301|consen 925 LK-ILSLIKSLRILR----ALRPLRALSRFPGMR---VVV--LALFGGLPEIFNVLLVCLIFWFIFAIMGV 985 (1592)
T ss_pred hh-hhhHHHHHHHHH----HHHHHHHHHHccccc---hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223334444332 334444333333221 111 23455666666666666665555555554
No 51
>COG4709 Predicted membrane protein [Function unknown]
Probab=73.97 E-value=16 Score=36.17 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh--cCCChHHHHhhC--ChhhHHHHHHHHHHHHHhcCcccCCccHH
Q 048288 439 RRDSEQWMHHRWLPQDLRERVRRYEHFKWLET--RGVDEESLVQSL--PKDLRRDIKRHLCLNLVRRVPLFANMDER 511 (732)
Q Consensus 439 ~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~--~~~~e~~il~~L--P~~Lr~~I~~~l~~~lL~~v~lF~~ls~~ 511 (732)
++++++|++ .+|++.+..+..||+-.+.+. .|.+|+++..+| |+++-+|+..+.-.+-.+.-|-+.+....
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 456777775 899999999999888777653 667899999988 66777777776666666666666665543
No 52
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.28 E-value=98 Score=37.40 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=33.1
Q ss_pred hhCChhhHHHHHHHHHHHHHh-----cCcccCCccHHHHHHHHhcCe
Q 048288 480 QSLPKDLRRDIKRHLCLNLVR-----RVPLFANMDERLLDAICERLK 521 (732)
Q Consensus 480 ~~LP~~Lr~~I~~~l~~~lL~-----~v~lF~~ls~~~l~~L~~~l~ 521 (732)
+.||++||+.|..+.+..... .-.+.++++++....|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 369999999999998776654 335677889988888888764
No 53
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=68.20 E-value=8.4 Score=31.06 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=33.4
Q ss_pred EEeCCCCEEEecCCCCC-eEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 523 SLCTEGTCVVREGDPVD-EMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 523 ~~~~kge~I~~eGd~~~-~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..++||+..-..-.+.. ++++|++|.+.+. .+ |+ ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-cE-----EeEccCCEEEE
Confidence 46778887766666666 9999999999887 33 33 35788998763
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=67.87 E-value=12 Score=36.16 Aligned_cols=59 Identities=19% Similarity=0.331 Sum_probs=40.4
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHH
Q 048288 537 PVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEE 612 (732)
Q Consensus 537 ~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~d 612 (732)
..++++++++|.+.+...++|+.. ...+++||+|= + +.- -..+-++.++|.++.|.+..
T Consensus 47 ~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl-------v-P~g------vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL-------L-PPH------VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE-------e-CCC------CCcccccCCCcEEEEEEeCC
Confidence 378999999999999766666422 35799999873 2 221 23445556778888777653
No 55
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=67.68 E-value=30 Score=34.16 Aligned_cols=54 Identities=26% Similarity=0.498 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh--hcCCChHHHHhhC--ChhhHHHHHHHH
Q 048288 439 RRDSEQWMHHRWLPQDLRERVRRYEHFKWLE--TRGVDEESLVQSL--PKDLRRDIKRHL 494 (732)
Q Consensus 439 ~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~--~~~~~e~~il~~L--P~~Lr~~I~~~l 494 (732)
+++++.+++ ++|++-++.+.+||+-...+ ..|.+|+++.++| |+++-+++..+.
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 456678886 59999999999999888775 4578899999997 667777766543
No 56
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=67.57 E-value=30 Score=32.15 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=43.5
Q ss_pred eeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEc
Q 048288 521 KPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRAL 600 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al 600 (732)
....++||..+-..-....++++|++|.+++...++|+ ...+.+||.+- +.+. ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~-------~~~~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYA-------LDKH-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEE-------ECCC-------CcEEEEcC
Confidence 34577888755332222247999999999886333355 45799999875 3222 23456666
Q ss_pred ccceEEEe
Q 048288 601 AEVEAFAL 608 (732)
Q Consensus 601 ~~~ell~L 608 (732)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 78877765
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=59.53 E-value=19 Score=35.47 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=42.8
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHH
Q 048288 536 DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELK 614 (732)
Q Consensus 536 d~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~ 614 (732)
++.++++++++|.+.+...++|+-. ...+.+||+|= -+.- -..+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------lP~g------vpHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL--------LPPH------VPHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE--------eCCC------CCcCCccCCCeEEEEEEeCCCC
Confidence 5678999999999999776666422 35799999873 2221 1234455688888888765443
No 58
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=55.17 E-value=20 Score=32.41 Aligned_cols=44 Identities=32% Similarity=0.501 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHhh----------hcCCChHHHHhhCChhhHHHHHHH
Q 048288 450 WLPQDLRERVRRYEHFKWLE----------TRGVDEESLVQSLPKDLRRDIKRH 493 (732)
Q Consensus 450 ~lp~~L~~rVr~y~~y~w~~----------~~~~~e~~il~~LP~~Lr~~I~~~ 493 (732)
.||+++|..|...+.-.-.. ....|...++..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 68999999999988755331 123566889999999999998754
No 59
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=50.08 E-value=78 Score=25.15 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=25.5
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHH
Q 048288 397 PKEVIFSIAV---GVAGLVLLALLIGNMQTYLTSLT---VRLEEMRIKRRDSEQWMH 447 (732)
Q Consensus 397 ~~E~if~i~i---~i~G~~lfa~lIg~~~~~l~~~~---~~~~e~r~k~~~~~~~m~ 447 (732)
.+..++.+.+ .+++.+.|+. -|-.++++.+ +...++++|++.+-+-+.
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3445555533 3344444443 3444555433 233368888888877653
No 60
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=46.58 E-value=97 Score=34.39 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 048288 369 FFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTV 430 (732)
Q Consensus 369 ~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 430 (732)
..--|+.+|-+++..+.+++-++....-..-..+++++.++++++|-+.|..++..+|-.+.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~i 158 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNI 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 45567777777788887777666533333338889999999999999999999988775443
No 61
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=45.49 E-value=38 Score=28.17 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=29.4
Q ss_pred EeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 524 LCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 524 ~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+|..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 13 ~~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 13 ECTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EEECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred EECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 345555443332 38899999999998654 565 35689999874
No 62
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=45.46 E-value=20 Score=33.51 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048288 368 NFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSL 428 (732)
Q Consensus 368 ~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~ 428 (732)
........++|+.+.++.. +-++..|.....+++.++..++++++.+...|++.+++...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455677788888877765 33568899999999999999999999999999999998764
No 63
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=45.35 E-value=56 Score=30.82 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=37.4
Q ss_pred CeeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEEec-CCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVTTD-GGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~~~-~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|...-..-.+ .+++++|++|...+...+ +|++.. ...+.+||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 445577888876554433 578999999999986543 344544 57899999774
No 64
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=44.66 E-value=88 Score=31.39 Aligned_cols=58 Identities=22% Similarity=0.465 Sum_probs=38.9
Q ss_pred hCChhhHHHHHHHHHHHHHhcCccc-CCccHHHHHHHHhcCeeEE--eCCCCEEEecCCCCC
Q 048288 481 SLPKDLRRDIKRHLCLNLVRRVPLF-ANMDERLLDAICERLKPSL--CTEGTCVVREGDPVD 539 (732)
Q Consensus 481 ~LP~~Lr~~I~~~l~~~lL~~v~lF-~~ls~~~l~~L~~~l~~~~--~~kge~I~~eGd~~~ 539 (732)
.+|.. .+.+...+...+++-.-.| ...++...++..+...+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44555 3334444444444332233 3567778888888899887 999999999999875
No 65
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=44.09 E-value=7.5e+02 Score=31.07 Aligned_cols=58 Identities=10% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccC--ccchhHHHHHHHHHHHHHHHHHHHhhc-ccee
Q 048288 103 LWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSME--PKLGSAFTTLRTAFDLFYLIHMIFQFH-TAYI 169 (732)
Q Consensus 103 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d--~~~~~~~~~~~~~~D~~f~lDi~l~F~-tay~ 169 (732)
+.+++-++.++++++..-+| ..|-++| ..--..+.+++-++-+||.+.|+++.. .|.+
T Consensus 80 wfe~vsmlvillncvtlgmf---------rpced~~c~s~rc~ilqafddfifaffavemv~kmvalgif 140 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMF---------RPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIF 140 (1956)
T ss_pred HHHHHHHHHHHHhhhhhccc---------ccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34666677777777655543 2233332 222346788999999999999999986 3544
No 66
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=41.60 E-value=7.2e+02 Score=30.15 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=35.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Q 048288 396 SPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVR-LEEMRIKRRD 441 (732)
Q Consensus 396 ~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~-~~e~r~k~~~ 441 (732)
..+-.+|.++..+.-+++.=++|+-|+...+..... .++|+-.+-.
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~~ 632 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRAK 632 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 457778888888888899999999999998877554 5567655544
No 67
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.27 E-value=2.6e+02 Score=37.00 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhh
Q 048288 103 LWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQF 164 (732)
Q Consensus 103 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F 164 (732)
.|+.++++..+++.+..-...+.. .......+..++.++-++|.+.++++-
T Consensus 1158 ~F~~~i~~li~ln~i~l~~~~~~q-----------s~~~~~~l~~in~vft~~Ft~E~vLKi 1208 (1592)
T KOG2301|consen 1158 AFDYLIMLLIFLNTIIMMVETYDQ-----------SDTYTAILTILNAVFIVLFTIECILKV 1208 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666555543211 112344677889999999999998874
No 68
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=38.21 E-value=8.6e+02 Score=30.04 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHHHHHH
Q 048288 449 RWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLC 495 (732)
Q Consensus 449 ~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~ 495 (732)
.+||+.||..|..+...... ..-.+++.++++...++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhh
Confidence 37999999999887765443 2335778888888777766654
No 69
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=37.12 E-value=71 Score=29.40 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=39.4
Q ss_pred CeeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehh
Q 048288 520 LKPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEE 576 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~ 576 (732)
+....+.||..+-.--.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 346688999988877777 77999999999998765 44 4579999998643
No 70
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.80 E-value=3.1e+02 Score=33.42 Aligned_cols=73 Identities=23% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhccCCCCCC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Q 048288 374 FYCFWFGLQNLSTLGQGLKT-----TTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVR-LEEMRIKRRDSEQWMH 447 (732)
Q Consensus 374 ~~slywal~tlstvGygd~~-----~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~-~~e~r~k~~~~~~~m~ 447 (732)
..+++|++-.++-++--++. ..+.++.+|.+--++.=+++.-++|+-|.+-.|..... -.||+ -.++.-||+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK--FARAKLw~s 632 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK--FARAKLWMS 632 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH--HHHHHHHHH
Confidence 45889998766654433332 33456666666666666777777777777777766433 23554 444556665
Q ss_pred h
Q 048288 448 H 448 (732)
Q Consensus 448 ~ 448 (732)
.
T Consensus 633 y 633 (822)
T KOG3609|consen 633 Y 633 (822)
T ss_pred H
Confidence 5
No 71
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=30.87 E-value=8e+02 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=13.9
Q ss_pred HHHHHHhhh-hhHhHhhhcc
Q 048288 187 MIARRYLRH-HFIVDFLSVL 205 (732)
Q Consensus 187 ~Ia~rYlk~-~F~iDlls~l 205 (732)
+..++|+++ |-++|++.++
T Consensus 234 ~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 234 REGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HhhhHHhhhcCcHHHHHHHH
Confidence 334688887 8888887665
No 72
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=29.12 E-value=99 Score=27.81 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhh---------cCC----ChHHHHhhCChhhHHHHHHHHHHH
Q 048288 450 WLPQDLRERVRRYEHFKWLET---------RGV----DEESLVQSLPKDLRRDIKRHLCLN 497 (732)
Q Consensus 450 ~lp~~L~~rVr~y~~y~w~~~---------~~~----~e~~il~~LP~~Lr~~I~~~l~~~ 497 (732)
-||+++|..|..-..-.-... .+. -..++|..||+++|.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 589999999854443321110 000 126899999999999998765543
No 73
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=28.68 E-value=1.3e+02 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=33.5
Q ss_pred CeeEEeCCCCEE-EecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCee
Q 048288 520 LKPSLCTEGTCV-VREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFC 573 (732)
Q Consensus 520 l~~~~~~kge~I-~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~f 573 (732)
.....+++|+-+ .+--...++.|+|++|...+... |+ ...+++||.+
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 455677777775 44444578999999999998654 44 3468888865
No 74
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=27.88 E-value=1.6e+02 Score=34.44 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLT 426 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~ 426 (732)
.-.++|++-..|..-|-|.-+|.+..-.++.++.+=+.+++-|-..+|++..|.
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 345788777777777888889999999998888888888888888888887764
No 75
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=27.77 E-value=1.7e+02 Score=25.09 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=44.0
Q ss_pred cCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEE
Q 048288 519 RLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVR 598 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~ 598 (732)
......+.||..+-....++.+..||++|.+. ..+| .+.+||++=.- +. +..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~---d~~~--------~~~~G~~~~~p-------~g-------~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELS---DGDG--------RYGAGDWLRLP-------PG-------SSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEE---ETTC--------EEETTEEEEE--------TT-------EEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEE---ECCc--------cCCCCeEEEeC-------CC-------CccccC
Confidence 34567888998888777788888899999986 2332 35788876422 11 567788
Q ss_pred EcccceEEE
Q 048288 599 ALAEVEAFA 607 (732)
Q Consensus 599 Al~~~ell~ 607 (732)
+-++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888875
No 76
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.51 E-value=1.3e+03 Score=28.52 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 048288 142 GSAFTTLRTAFDLFYLIHMIFQFH 165 (732)
Q Consensus 142 ~~~~~~~~~~~D~~f~lDi~l~F~ 165 (732)
...+.++++++.++.++-+++.-.
T Consensus 497 ~s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 497 RSKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888888877643
No 77
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=26.34 E-value=1e+03 Score=27.32 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=28.3
Q ss_pred hHHHHHHH-HHHHHHHhhccCCCCCCCCChhhHHHHHHHHHH--HHHHHHHHHHHHH
Q 048288 369 FFSKFFYC-FWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVA--GLVLLALLIGNMQ 422 (732)
Q Consensus 369 ~~~~Y~~s-lywal~tlstvGygd~~~~~~~E~if~i~i~i~--G~~lfa~lIg~~~ 422 (732)
.+.....| ++|++. +|+++.....+.|.++.... |+++-+.++..+.
T Consensus 140 lw~~~vvS~lFW~fa-------ndi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 140 LWGSVVLSLLFWGFA-------NQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667 889986 46666777778877766543 3333344444433
No 78
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.94 E-value=1.9e+02 Score=27.57 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHh
Q 048288 404 IAVGVAGLVLLALLIGNMQTYLTSL-------------TVRLEEMRIKRRDSEQWMHH 448 (732)
Q Consensus 404 i~i~i~G~~lfa~lIg~~~~~l~~~-------------~~~~~e~r~k~~~~~~~m~~ 448 (732)
+++.++|+.+||++++-+.+.-... ....++|+.+.+...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 6778999999999998764322111 24577899998888866653
No 79
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.28 E-value=1.8e+02 Score=28.09 Aligned_cols=51 Identities=29% Similarity=0.330 Sum_probs=32.4
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEe
Q 048288 537 PVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFAL 608 (732)
Q Consensus 537 ~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L 608 (732)
..+++.+|++|.+.+. .+|+ ....++||.+= + ++- ++.+..+-..+.++..
T Consensus 94 ~YDEi~~VlEG~L~i~--~~G~-----~~~A~~GDvi~-------i-PkG------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEIS--IDGQ-----TVTAKPGDVIF-------I-PKG------STITFSTPDYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEEEEEE--ETTE-----EEEEETT-EEE-------E--TT-------EEEEEEEEEEEEEEE
T ss_pred ecceEEEEEEeEEEEE--ECCE-----EEEEcCCcEEE-------E-CCC------CEEEEecCCCEEEEEE
Confidence 3589999999999886 3466 45789999863 2 222 4555665566666554
No 80
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.14 E-value=1.9e+02 Score=32.06 Aligned_cols=52 Identities=15% Similarity=0.044 Sum_probs=35.1
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD-GGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~-~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|...-.--....++.+|++|.+++...+ +|+.. ...+.+||++-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 344567777765332234568999999999996544 45543 24799999874
No 81
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.14 E-value=1.5e+02 Score=20.81 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 048288 438 KRRDSEQWMHHRWLP-----QDLRERVRRYE 463 (732)
Q Consensus 438 k~~~~~~~m~~~~lp-----~~L~~rVr~y~ 463 (732)
+..++.++++.++|| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 346778899999998 67888888874
No 82
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=23.73 E-value=3.2e+02 Score=20.58 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 048288 401 IFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDS 442 (732)
Q Consensus 401 if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~ 442 (732)
.++.+..+.-++....+...++++-.......+++|..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555666666666666667777777666654
No 83
>PRK09108 type III secretion system protein HrcU; Validated
Probab=22.79 E-value=2.3e+02 Score=31.23 Aligned_cols=69 Identities=4% Similarity=0.120 Sum_probs=45.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 048288 394 TTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRY 462 (732)
Q Consensus 394 ~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y 462 (732)
+......++.++..++..++.++++-.+..+.-....-.+++|-..+++++-+++..-+|+++.|+|+-
T Consensus 174 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~ 242 (353)
T PRK09108 174 PPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRL 242 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334455566666666666666666666666555544455555656678888888888888888887653
No 84
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=21.88 E-value=1.2e+02 Score=35.21 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Q 048288 375 YCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRW 450 (732)
Q Consensus 375 ~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~ 450 (732)
.|+|+++.....-| .|+.|......+..-+.-++-+++-+--.+|++..|. .|.|..-+..+|..-++..
T Consensus 598 NsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQte 667 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTE 667 (897)
T ss_pred HHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcce
Confidence 49999999988766 5999999999999888888888887777788887764 2344444444444444443
No 85
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=21.84 E-value=3.5e+02 Score=27.09 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=32.4
Q ss_pred eeEEeCCCCEE---------EecCCCCCeEEEEEeeEEEEEEec-CCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCV---------VREGDPVDEMLLIIRGRLESVTTD-GGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I---------~~eGd~~~~myfI~~G~v~v~~~~-~G~e~~~~~~~l~~Gd~fG 574 (732)
-...+.||... +++.....++|+|++|...+...+ +|. .. ...+.+||.+-
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~--~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-AR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EE--EEEECCCCEEE
Confidence 34566777743 333334459999999999886533 332 11 45789999764
No 86
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=21.27 E-value=1.4e+03 Score=28.59 Aligned_cols=120 Identities=11% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccccccccccccccccCCCCCCCCCc
Q 048288 271 LFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKCNPNSLNSEF 350 (732)
Q Consensus 271 ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~~~~f 350 (732)
+++|+.+.|+.+-.-++.- |.+..+.|-.-.=-..+..+.|
T Consensus 568 VmmFVm~livaai~vFlFE---------------------------------------y~SPvgyn~~l~~gkkpggp~F 608 (1258)
T KOG1053|consen 568 VMMFVMCLIVAAITVFLFE---------------------------------------YFSPVGYNRNLANGKKPGGPSF 608 (1258)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------------------------------hcCcccccccccCCCCCCCcce
Q ss_pred chhhhHHhhhhccccCcchHHHHHHHHH--HHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048288 351 NFGIYLQAIESEIHTSKNFFSKFFYCFW--FGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSL 428 (732)
Q Consensus 351 ~~gi~~~al~~~~~~~~~~~~~Y~~sly--wal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~ 428 (732)
.+|- ++| ||+.-=.||- -..|....-++...+.+++++++.|.-.+|++..+-..
T Consensus 609 tigk---------------------aiwllwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 609 TIGK---------------------AIWLLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred ehhh---------------------HHHHHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHhCCCC
Q 048288 429 -------------------------------TVRLEEMRIKRRDSEQWMHHRWLP 452 (732)
Q Consensus 429 -------------------------------~~~~~e~r~k~~~~~~~m~~~~lp 452 (732)
..-.+.+|....++.+||++-+.|
T Consensus 666 ~~~d~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~ 720 (1258)
T KOG1053|consen 666 EYYDTVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQP 720 (1258)
T ss_pred hhhhhccccCcccccCccccCCCcccccCCCCchhhhHHhccHHHHHHHHHhccC
No 87
>COG1422 Predicted membrane protein [Function unknown]
Probab=20.87 E-value=3.2e+02 Score=27.53 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHH
Q 048288 408 VAGLVLLALLIGNMQTYLTSLTV---RLEEMRIKRRDSEQWMH 447 (732)
Q Consensus 408 i~G~~lfa~lIg~~~~~l~~~~~---~~~e~r~k~~~~~~~m~ 447 (732)
.+++++.|.++|-..++++.... +.+++++.+++.++.++
T Consensus 47 ~lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 47 HLVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888887654 44455555555555544
No 88
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=20.39 E-value=2.1e+02 Score=26.85 Aligned_cols=54 Identities=28% Similarity=0.306 Sum_probs=35.6
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEE-EEecCC-----ceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLES-VTTDGG-----RTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v-~~~~~G-----~e~~~~~~~l~~Gd~fG 574 (732)
+....+.||....-.=..+.++.+|++|+.++ ....++ +.....+ .+++||+|-
T Consensus 36 ~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v-~l~~Gdv~~ 95 (144)
T PF00190_consen 36 VRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKV-RLKAGDVFV 95 (144)
T ss_dssp EEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEE-EEETTEEEE
T ss_pred EEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeecee-eeeccccee
Confidence 34455678887765545788999999999997 333433 1111112 499999986
No 89
>PRK06771 hypothetical protein; Provisional
Probab=20.33 E-value=5.2e+02 Score=22.79 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 048288 399 EVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 461 (732)
Q Consensus 399 E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~ 461 (732)
|.+..|.+.++|+ -|+.-.+..+.+.+..+....+.+++.+.+.+..-...+.+-+.+++
T Consensus 2 E~~ili~~~~~~~---i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 2 EFWMIIPIAIFGF---IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred chhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 3444444444443 34455555666666677777777777666665444442233344443
No 90
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=20.29 E-value=97 Score=24.67 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.1
Q ss_pred HHHHhhCChhhHHHHHHHH
Q 048288 476 ESLVQSLPKDLRRDIKRHL 494 (732)
Q Consensus 476 ~~il~~LP~~Lr~~I~~~l 494 (732)
-+++++||.+|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3588999999999998765
Done!