Query 048288
Match_columns 732
No_of_seqs 587 out of 3152
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 7.2E-33 2.5E-37 302.0 19.1 342 94-632 3-346 (355)
2 3ukn_A Novel protein similar t 100.0 1.1E-31 3.7E-36 270.7 14.8 204 422-641 1-206 (212)
3 2ptm_A Hyperpolarization-activ 100.0 1.6E-30 5.6E-35 259.2 23.2 192 427-633 2-193 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 3.5E-30 1.2E-34 257.8 21.8 189 426-630 2-190 (202)
5 1orq_C Potassium channel; volt 99.9 1E-20 3.5E-25 192.5 19.9 211 103-427 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 2.8E-19 9.7E-24 170.4 16.3 142 475-631 5-148 (160)
7 2r9r_B Paddle chimera voltage 99.8 1.1E-17 3.7E-22 190.0 21.6 298 95-496 174-490 (514)
8 3gyd_A CNMP-BD protein, cyclic 99.8 1E-17 3.5E-22 165.2 17.9 155 474-639 12-171 (187)
9 3ocp_A PRKG1 protein; serine/t 99.7 1.6E-17 5.6E-22 154.9 11.9 131 481-626 7-137 (139)
10 3dn7_A Cyclic nucleotide bindi 99.7 3.6E-17 1.2E-21 161.4 14.9 148 496-671 6-155 (194)
11 3mdp_A Cyclic nucleotide-bindi 99.7 2.7E-17 9.1E-22 153.3 12.0 133 497-638 6-140 (142)
12 3idb_B CAMP-dependent protein 99.7 2E-17 6.9E-22 158.4 11.5 128 487-625 28-155 (161)
13 4ev0_A Transcription regulator 99.7 3.1E-16 1E-20 157.1 18.1 126 499-635 1-127 (216)
14 2pqq_A Putative transcriptiona 99.7 7.8E-17 2.7E-21 151.2 12.5 122 496-628 4-126 (149)
15 1wgp_A Probable cyclic nucleot 99.7 9E-18 3.1E-22 156.0 5.7 127 497-625 6-134 (137)
16 2z69_A DNR protein; beta barre 99.7 3.4E-16 1.2E-20 147.8 14.3 128 496-633 11-139 (154)
17 3d0s_A Transcriptional regulat 99.7 3.8E-16 1.3E-20 158.0 15.2 187 496-698 5-195 (227)
18 3dkw_A DNR protein; CRP-FNR, H 99.7 3.5E-16 1.2E-20 158.0 14.8 130 496-635 8-138 (227)
19 3fx3_A Cyclic nucleotide-bindi 99.7 3.1E-16 1E-20 159.7 14.4 129 495-634 9-138 (237)
20 3dv8_A Transcriptional regulat 99.7 1.3E-15 4.6E-20 152.9 18.4 128 497-635 3-133 (220)
21 3e97_A Transcriptional regulat 99.7 1.1E-15 3.6E-20 155.1 17.8 129 496-635 5-134 (231)
22 3iwz_A CAP-like, catabolite ac 99.6 3E-15 1E-19 151.4 17.9 147 496-657 10-163 (230)
23 1vp6_A CNBD, cyclic-nucleotide 99.6 1.3E-15 4.5E-20 141.3 13.5 123 495-634 9-131 (138)
24 2gau_A Transcriptional regulat 99.6 1.6E-15 5.6E-20 153.8 14.8 125 500-635 13-138 (232)
25 3pna_A CAMP-dependent protein 99.6 1.8E-15 6.1E-20 143.8 13.5 119 492-625 33-151 (154)
26 3shr_A CGMP-dependent protein 99.6 2.9E-15 1E-19 158.2 15.3 140 476-630 18-157 (299)
27 1zyb_A Transcription regulator 99.6 4.3E-15 1.5E-19 151.2 14.8 129 495-633 16-147 (232)
28 3ryp_A Catabolite gene activat 99.6 1E-14 3.6E-19 145.2 16.8 140 503-657 2-143 (210)
29 2fmy_A COOA, carbon monoxide o 99.6 5.4E-15 1.8E-19 148.9 13.9 179 497-698 4-185 (220)
30 2oz6_A Virulence factor regula 99.6 3E-14 1E-18 141.5 17.9 117 508-635 1-122 (207)
31 4ava_A Lysine acetyltransferas 99.6 1E-14 3.5E-19 156.5 15.1 128 496-636 12-140 (333)
32 2d93_A RAP guanine nucleotide 99.6 1.2E-15 4E-20 141.4 5.2 124 483-621 2-127 (134)
33 3kcc_A Catabolite gene activat 99.6 4.1E-14 1.4E-18 146.7 17.0 137 506-657 55-193 (260)
34 3shr_A CGMP-dependent protein 99.6 7.9E-15 2.7E-19 154.8 11.4 126 493-629 153-280 (299)
35 1ft9_A Carbon monoxide oxidati 99.6 1.5E-14 5.1E-19 145.9 12.6 118 498-633 1-118 (222)
36 1o5l_A Transcriptional regulat 99.5 2.4E-14 8.3E-19 143.6 12.0 121 502-633 4-126 (213)
37 2qcs_B CAMP-dependent protein 99.5 7.4E-14 2.5E-18 146.5 15.9 128 493-631 153-282 (291)
38 3tnp_B CAMP-dependent protein 99.5 4.3E-14 1.5E-18 156.9 14.7 128 487-625 135-262 (416)
39 3of1_A CAMP-dependent protein 99.5 3.1E-14 1.1E-18 145.1 12.2 123 495-632 5-127 (246)
40 2qcs_B CAMP-dependent protein 99.5 6.2E-14 2.1E-18 147.1 14.4 128 491-633 33-160 (291)
41 3of1_A CAMP-dependent protein 99.5 4.4E-14 1.5E-18 144.0 12.7 118 494-625 122-239 (246)
42 4din_B CAMP-dependent protein 99.5 7.7E-14 2.6E-18 153.1 11.0 131 493-634 244-376 (381)
43 2a9h_A Voltage-gated potassium 99.5 1.5E-13 5.1E-18 131.0 11.3 65 370-434 82-146 (155)
44 3e6c_C CPRK, cyclic nucleotide 99.5 1.5E-13 5.1E-18 141.3 12.1 123 499-635 11-134 (250)
45 4din_B CAMP-dependent protein 99.5 1.4E-13 4.9E-18 150.9 12.7 130 489-633 122-251 (381)
46 3la7_A Global nitrogen regulat 99.5 8.4E-13 2.9E-17 135.2 16.2 115 510-633 30-148 (243)
47 2bgc_A PRFA; bacterial infecti 99.4 1.9E-12 6.4E-17 132.1 17.8 137 506-657 2-143 (238)
48 3tnp_B CAMP-dependent protein 99.4 2.3E-13 7.8E-18 151.1 11.0 120 496-626 266-392 (416)
49 1o7f_A CAMP-dependent RAP1 gua 99.4 5E-13 1.7E-17 150.2 13.7 137 481-629 26-165 (469)
50 3vou_A ION transport 2 domain 99.4 1.8E-12 6.3E-17 122.9 15.3 86 373-458 53-148 (148)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 7.9E-13 2.7E-17 148.6 12.5 120 493-626 333-454 (469)
52 4h33_A LMO2059 protein; bilaye 99.4 4.3E-13 1.5E-17 125.5 8.4 92 373-464 44-135 (137)
53 2ih3_C Voltage-gated potassium 99.3 7.6E-12 2.6E-16 114.6 11.6 60 371-430 60-119 (122)
54 4f7z_A RAP guanine nucleotide 99.3 8.3E-12 2.8E-16 153.3 14.9 135 477-624 23-160 (999)
55 3cf6_E RAP guanine nucleotide 99.3 7.4E-12 2.5E-16 147.1 12.1 133 476-623 12-146 (694)
56 3b02_A Transcriptional regulat 99.2 2.7E-11 9.4E-16 119.4 11.9 93 523-633 2-95 (195)
57 3eff_K Voltage-gated potassium 99.2 7.4E-11 2.5E-15 110.6 11.8 89 372-461 40-129 (139)
58 4f7z_A RAP guanine nucleotide 99.2 7.7E-11 2.6E-15 144.7 14.1 115 493-621 333-449 (999)
59 2zcw_A TTHA1359, transcription 99.2 8.1E-11 2.8E-15 116.6 10.2 98 517-633 2-102 (202)
60 3rvy_A ION transport protein; 99.1 1.2E-09 4.2E-14 114.7 15.0 206 103-430 31-244 (285)
61 2q67_A Potassium channel prote 99.0 2E-09 6.9E-14 97.2 12.4 60 373-432 50-109 (114)
62 3ouf_A Potassium channel prote 98.9 5.1E-09 1.7E-13 91.7 11.2 55 373-427 33-87 (97)
63 2k1e_A Water soluble analogue 98.9 4.1E-10 1.4E-14 99.9 3.8 59 372-430 40-98 (103)
64 3ldc_A Calcium-gated potassium 98.8 7.7E-09 2.6E-13 87.6 8.0 54 372-425 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 3.1E-10 1.1E-14 109.6 -1.0 65 370-434 65-129 (166)
66 1xl4_A Inward rectifier potass 98.6 7.7E-08 2.6E-12 101.4 9.3 56 372-427 82-137 (301)
67 3um7_A Potassium channel subfa 98.6 1.7E-07 5.8E-12 98.6 10.6 57 372-428 115-171 (309)
68 1p7b_A Integral membrane chann 98.5 1.7E-07 5.8E-12 99.9 8.3 58 372-429 96-153 (333)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 5E-07 1.7E-11 96.0 10.9 59 372-430 78-136 (321)
70 3sya_A G protein-activated inw 98.4 1.6E-06 5.6E-11 92.2 12.6 60 372-431 91-152 (340)
71 4gx0_A TRKA domain protein; me 98.2 4.3E-06 1.5E-10 96.1 12.6 54 373-426 52-106 (565)
72 3ukm_A Potassium channel subfa 98.2 2.3E-06 7.9E-11 88.6 8.3 56 372-427 93-148 (280)
73 3um7_A Potassium channel subfa 98.2 8.4E-07 2.9E-11 93.3 4.9 61 372-432 224-290 (309)
74 3spc_A Inward-rectifier K+ cha 98.2 6.7E-06 2.3E-10 87.6 10.9 59 371-429 93-153 (343)
75 3ukm_A Potassium channel subfa 98.1 3E-06 1E-10 87.8 5.7 57 373-429 202-265 (280)
76 4dxw_A Navrh, ION transport pr 98.1 0.00013 4.4E-09 73.6 17.6 75 103-207 13-88 (229)
77 1lnq_A MTHK channels, potassiu 97.9 1.1E-06 3.9E-11 94.1 -1.7 57 372-428 45-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.7 0.00025 8.6E-09 66.5 11.4 78 103-210 22-99 (147)
79 1ors_C Potassium channel; volt 97.4 0.0012 4.1E-08 60.7 11.1 78 102-209 6-83 (132)
80 3rns_A Cupin 2 conserved barre 72.7 11 0.00039 37.0 8.8 68 520-608 39-106 (227)
81 3fjs_A Uncharacterized protein 70.0 16 0.00056 31.5 8.3 67 520-607 38-104 (114)
82 2kxw_B Sodium channel protein 66.3 5.2 0.00018 25.8 2.9 18 640-657 5-22 (27)
83 2ozj_A Cupin 2, conserved barr 65.4 19 0.00066 30.6 7.7 64 524-608 44-107 (114)
84 2l53_B CAM, voltage-gated sodi 64.4 5.7 0.00019 26.5 2.9 19 639-657 4-22 (31)
85 2pfw_A Cupin 2, conserved barr 60.9 39 0.0013 28.5 9.0 68 520-608 36-103 (116)
86 1yhf_A Hypothetical protein SP 60.0 37 0.0013 28.6 8.6 67 521-608 43-109 (115)
87 3lwc_A Uncharacterized protein 59.8 21 0.00071 31.3 6.9 45 522-574 44-88 (119)
88 1yfu_A 3-hydroxyanthranilate-3 57.2 24 0.00081 33.4 7.0 58 537-611 54-112 (174)
89 3kg2_A Glutamate receptor 2; I 54.3 12 0.00041 43.9 5.7 55 372-427 563-617 (823)
90 4e2g_A Cupin 2 conserved barre 48.3 54 0.0019 28.1 7.8 77 520-617 43-123 (126)
91 1o5u_A Novel thermotoga mariti 45.2 60 0.0021 27.4 7.3 47 520-574 33-79 (101)
92 3rns_A Cupin 2 conserved barre 44.9 48 0.0016 32.3 7.6 68 520-608 155-223 (227)
93 1zvf_A 3-hydroxyanthranilate 3 43.9 52 0.0018 31.0 7.0 59 537-611 53-114 (176)
94 3d0j_A Uncharacterized protein 42.5 59 0.002 29.5 7.0 62 532-610 44-109 (140)
95 4axo_A EUTQ, ethanolamine util 41.6 51 0.0018 30.3 6.6 52 537-609 83-134 (151)
96 2qnk_A 3-hydroxyanthranilate 3 40.0 64 0.0022 32.8 7.5 61 535-612 48-108 (286)
97 2bnm_A Epoxidase; oxidoreducta 39.9 73 0.0025 29.9 7.9 49 523-574 122-173 (198)
98 1dgw_A Canavalin; duplicated s 39.1 33 0.0011 32.2 5.1 51 520-574 43-94 (178)
99 1v70_A Probable antibiotics sy 38.5 46 0.0016 27.0 5.5 47 521-574 31-78 (105)
100 2gu9_A Tetracenomycin polyketi 38.1 40 0.0014 28.0 5.1 47 521-574 24-73 (113)
101 3h8u_A Uncharacterized conserv 37.3 43 0.0015 28.8 5.3 49 520-574 41-90 (125)
102 3d82_A Cupin 2, conserved barr 34.5 70 0.0024 26.0 6.0 51 538-609 50-100 (102)
103 1fi2_A Oxalate oxidase, germin 33.6 77 0.0026 30.2 6.8 53 520-574 74-130 (201)
104 3bcw_A Uncharacterized protein 31.7 34 0.0012 30.2 3.6 45 523-574 54-98 (123)
105 2pyt_A Ethanolamine utilizatio 31.6 1.1E+02 0.0038 27.1 7.1 44 522-574 61-104 (133)
106 2q30_A Uncharacterized protein 31.5 1.5E+02 0.005 24.3 7.7 67 522-608 37-105 (110)
107 4b29_A Dimethylsulfoniopropion 31.0 64 0.0022 31.6 5.6 45 524-574 138-182 (217)
108 2o1q_A Putative acetyl/propion 30.3 58 0.002 29.4 5.1 50 520-574 46-95 (145)
109 3fz3_A Prunin; TREE NUT allerg 30.0 90 0.0031 34.7 7.3 60 513-574 389-450 (531)
110 2q1z_B Anti-sigma factor CHRR, 30.0 68 0.0023 30.6 5.7 65 519-608 126-192 (195)
111 3ibm_A Cupin 2, conserved barr 29.6 57 0.0019 30.2 5.0 47 521-574 59-105 (167)
112 2d5f_A Glycinin A3B4 subunit; 29.2 93 0.0032 34.4 7.3 60 513-574 362-423 (493)
113 3es4_A Uncharacterized protein 28.7 51 0.0018 28.9 4.1 44 524-574 48-91 (116)
114 3c3v_A Arachin ARAH3 isoform; 28.3 83 0.0028 34.9 6.7 59 514-574 368-428 (510)
115 1fxz_A Glycinin G1; proglycini 28.3 77 0.0026 34.9 6.5 54 519-574 339-394 (476)
116 4i4a_A Similar to unknown prot 27.4 2.8E+02 0.0096 23.4 9.6 79 522-621 38-120 (128)
117 2fqp_A Hypothetical protein BP 27.0 31 0.0011 28.5 2.4 49 521-574 21-70 (97)
118 2i45_A Hypothetical protein; n 25.8 44 0.0015 27.9 3.1 67 526-612 36-102 (107)
119 2b8m_A Hypothetical protein MJ 24.9 63 0.0021 27.4 4.1 45 523-574 32-77 (117)
120 1sfn_A Conserved hypothetical 24.7 2.2E+02 0.0074 27.9 8.6 64 522-608 54-117 (246)
121 3kgz_A Cupin 2 conserved barre 24.4 54 0.0019 30.1 3.7 45 523-574 49-93 (156)
122 2vqa_A SLL1358 protein, MNCA; 24.3 1.1E+02 0.0037 31.8 6.6 51 521-574 55-107 (361)
123 2f4p_A Hypothetical protein TM 24.3 1.1E+02 0.0036 27.5 5.7 47 522-574 52-98 (147)
124 2e9q_A 11S globulin subunit be 24.1 1.3E+02 0.0045 32.8 7.3 60 513-574 317-378 (459)
125 1j58_A YVRK protein; cupin, de 24.1 1E+02 0.0036 32.4 6.5 52 520-574 81-133 (385)
126 1vj2_A Novel manganese-contain 23.9 73 0.0025 27.6 4.4 46 522-574 52-97 (126)
127 1lr5_A Auxin binding protein 1 23.8 66 0.0023 29.3 4.2 51 521-574 44-99 (163)
128 1o4t_A Putative oxalate decarb 23.4 80 0.0027 27.7 4.6 46 522-574 61-107 (133)
129 3es1_A Cupin 2, conserved barr 23.3 61 0.0021 30.4 3.9 48 520-573 81-128 (172)
130 3h7j_A Bacilysin biosynthesis 23.2 1E+02 0.0035 30.2 5.8 47 520-573 36-82 (243)
131 1uij_A Beta subunit of beta co 23.0 69 0.0024 34.6 4.7 53 519-574 50-102 (416)
132 3jzv_A Uncharacterized protein 22.8 55 0.0019 30.4 3.4 46 522-574 57-102 (166)
133 2ea7_A 7S globulin-1; beta bar 22.3 79 0.0027 34.3 5.0 53 519-574 62-114 (434)
134 1y9q_A Transcriptional regulat 21.9 1.1E+02 0.0037 28.6 5.5 46 522-574 108-155 (192)
135 2vqa_A SLL1358 protein, MNCA; 21.6 1.4E+02 0.0047 31.0 6.7 52 520-574 236-289 (361)
136 3i7d_A Sugar phosphate isomera 21.1 67 0.0023 29.5 3.6 47 521-574 46-94 (163)
137 2cav_A Protein (canavalin); vi 21.1 86 0.0029 34.2 5.0 52 519-574 87-139 (445)
138 2opk_A Hypothetical protein; p 20.9 78 0.0027 27.0 3.8 34 536-574 51-84 (112)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=7.2e-33 Score=302.04 Aligned_cols=342 Identities=18% Similarity=0.208 Sum_probs=133.4
Q ss_pred ecCCChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCC
Q 048288 94 FDPQDRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSS 173 (732)
Q Consensus 94 i~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss 173 (732)
+.|+|+.. +.+.++++++++++.-+..+ |.. .......+..++.++-++|++|+++++..+ +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~-~~~---------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALTI-PDM---------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHTS-SSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHcc-cch---------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-
Confidence 35777754 45555656666655555421 211 111122344455555566899999988432 11
Q ss_pred cccCCCeEeeCHHHHHHHHhh-hhhHhHhhhc-cChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHH
Q 048288 174 RVFGRGELVVDPAMIARRYLR-HHFIVDFLSV-LPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISE 251 (732)
Q Consensus 174 ~~~~~G~lV~d~~~Ia~rYlk-~~F~iDlls~-lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~ 251 (732)
. .+|.+ .|.++|++++ +|+..++ .+ +.. ..+++|++| ++|+.|..+..+.
T Consensus 66 ------~---------~~~~~~~~~i~Dl~~i~~p~~~~~----~~--~~~---~~r~lr~~R----~lrl~r~~~~~~~ 117 (355)
T 3beh_A 66 ------G---------VVRDRTPKIAIDVLAVLVPLAAFL----LD--GSP---DWSLYCAVW----LLKPLRDSTFFPV 117 (355)
T ss_dssp ------C---------SSCCCHHHHHHHHHHHHHHHHHHH----SC--CSG---GGGGGGGGG----GSHHHHTCSSHHH
T ss_pred ------c---------ceeccCcchHHHHHHHHHHHHHHH----hc--cch---hHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 12333 4899999999 6875432 11 111 223333332 4566666655555
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccccccc
Q 048288 252 LKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDDWKR 331 (732)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~ 331 (732)
+.+... ......+..++++++..|+.||++|.+.- |.
T Consensus 118 l~~~l~----~~~~~l~~~~~~~~~~~~~~a~~~~~~e~--------------------------------------~~- 154 (355)
T 3beh_A 118 LGRVLA----NEARNLIGVTTLFGVVLFAVALAAYVIER--------------------------------------DI- 154 (355)
T ss_dssp HHHHHH----HTHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------------------------TT-
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------------------CC-
Confidence 544321 11222334455566788999999998751 00
Q ss_pred cccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHH
Q 048288 332 ANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGL 411 (732)
Q Consensus 332 ~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~ 411 (732)
+++.+..|..|+||+++||||+||||++|.+..|++++++++++|+
T Consensus 155 ----------------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~ 200 (355)
T 3beh_A 155 ----------------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGI 200 (355)
T ss_dssp ----------------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHH
T ss_pred ----------------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHH
Confidence 0122446889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHH
Q 048288 412 VLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIK 491 (732)
Q Consensus 412 ~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~ 491 (732)
+++++++|.+.+.++....+ +++.
T Consensus 201 ~~~~~~~~~i~~~~~~~~~~----------------------------~~~~---------------------------- 224 (355)
T 3beh_A 201 GIFGLWAGILATGFYQEVRR----------------------------GDFV---------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------------------HHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------------------Hhhc----------------------------
Confidence 99999999998876532110 0000
Q ss_pred HHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCC
Q 048288 492 RHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGD 571 (732)
Q Consensus 492 ~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd 571 (732)
...+.++++|+|+++++++++.++..++.+.|+|||.|++|||+++++|||.+|.++++..+ + ..+++|+
T Consensus 225 --~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~ 294 (355)
T 3beh_A 225 --RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGA 294 (355)
T ss_dssp --HHHC--------------------------------------------------------------------------
T ss_pred --ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCC
Confidence 02456888999999999999999999999999999999999999999999999999997654 1 3789999
Q ss_pred eeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 048288 572 FCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTF 632 (732)
Q Consensus 572 ~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~ 632 (732)
+|||.++ +.+.| ++.+++|.++|+++.+++++|.++++++|++....++...
T Consensus 295 ~fGe~~~---l~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 295 FFGEMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp -------------------------------------------------------------
T ss_pred EEeehHH---hCCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999987 66666 7899999999999999999999999999987665554433
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.1e-31 Score=270.74 Aligned_cols=204 Identities=21% Similarity=0.395 Sum_probs=178.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHHHHHHHHHHhc
Q 048288 422 QTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRR 501 (732)
Q Consensus 422 ~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~lL~~ 501 (732)
++++++++.+.++|+++++++++||+++++|++|+.||++|++|.|.++++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999998877 8
Q ss_pred CcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhh
Q 048288 502 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWA 581 (732)
Q Consensus 502 v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~ 581 (732)
+|+|.++++++++.++..++...|+||++|+++||+++.+|||.+|.|+++. +| .+ +..+++|++|||.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~--- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSL--- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCC---
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHh---
Confidence 9999999999999999999999999999999999999999999999999985 33 33 789999999999987
Q ss_pred cCCC--CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHH
Q 048288 582 LDPK--SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRT 641 (732)
Q Consensus 582 l~~~--p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~ 641 (732)
+.+. + ++++++|+++|+++.|++++|..+++++|++..++++...+..+...+.
T Consensus 151 ~~~~~~~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~ 206 (212)
T 3ukn_A 151 TKEQVIK------TNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLRE 206 (212)
T ss_dssp SSSSCCB------BCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC
T ss_pred ccCCCCC------cceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccc
Confidence 5554 4 8899999999999999999999999999999988888887776665543
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.6e-30 Score=259.20 Aligned_cols=192 Identities=22% Similarity=0.419 Sum_probs=176.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHHHHHHHHHHhcCcccC
Q 048288 427 SLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFA 506 (732)
Q Consensus 427 ~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~ 506 (732)
+++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+|+++++.||++||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 467788999999999999999999999999999999999998 5889999999999999999999999999999999999
Q ss_pred CccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCC
Q 048288 507 NMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKS 586 (732)
Q Consensus 507 ~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p 586 (732)
+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|+ + +..+++|++|||.++ +.+.|
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~---~~~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICL---LTRER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHH---HHSSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHH---cCCCc
Confidence 99999999999999999999999999999999999999999999986 5565 3 689999999999987 55555
Q ss_pred CCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 587 STNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 587 ~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
++++++|+++|+++.|++++|..+++++|++...+++...+
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR 193 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 78999999999999999999999999999887766655443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=3.5e-30 Score=257.82 Aligned_cols=189 Identities=26% Similarity=0.431 Sum_probs=171.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCChHHHHhhCChhhHHHHHHHHHHHHHhcCccc
Q 048288 426 TSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLF 505 (732)
Q Consensus 426 ~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF 505 (732)
++++.+..+|+++++++++||++++||++|+.||++|++|.|. +++.+++++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5678899999999999999999999999999999999999998 588999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCC
Q 048288 506 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPK 585 (732)
Q Consensus 506 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~ 585 (732)
.+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++|||.++ +.+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~---~~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICL---LTRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHH---HHCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHH---hcCC
Confidence 999999999999999999999999999999999999999999999975 55664 35899999999987 5555
Q ss_pred CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 048288 586 SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQH 630 (732)
Q Consensus 586 p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~ 630 (732)
+ ++++++|.++|+++.|++++|..+++++|++...+++.
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 5 78999999999999999999999999999765544443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.86 E-value=1e-20 Score=192.50 Aligned_cols=211 Identities=15% Similarity=0.169 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEe
Q 048288 103 LWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELV 182 (732)
Q Consensus 103 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV 182 (732)
.||.+++++.++++++.++..+.+. +......+..++.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~----------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHH----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc----------ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 4898999999999888777643221 1223557889999999999999999999873
Q ss_pred eCHHHHHHHHhhhhhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHh-hHHHH
Q 048288 183 VDPAMIARRYLRHHFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISELKKIA-GVFAE 261 (732)
Q Consensus 183 ~d~~~Ia~rYlk~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~-~~~~~ 261 (732)
..++|+|+ +++|+++++|+..... +..........+.+|++| +.|++|+.+..++..+.. .....
T Consensus 65 -----~~~~y~~~-~iiDllailP~~~~~~----~~~~~~~~~~lr~lRllR----llR~~r~~~~~~~~~~~l~~~~~~ 130 (223)
T 1orq_C 65 -----DPAGYVKK-TLYEIPALVPAGLLAL----IEGHLAGLGLFRLVRLLR----FLRILLIISRGSKFLSAIADAADK 130 (223)
T ss_dssp -----CHHHHHHH-HHHHCTTHHHHHHHHH----HHHHHHTTTCHHHHHHHH----HHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -----cHHHHHHH-hHHHHHHHHHHHHHHH----HhcchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13799998 9999999999965542 000000011223333332 334444433222211111 11111
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCccccccccccccccccccC
Q 048288 262 STLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDKC 341 (732)
Q Consensus 262 ~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~c 341 (732)
.+....+++.++..|+.||++|++.. ++.+
T Consensus 131 ---~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------------~~~~-------------- 160 (223)
T 1orq_C 131 ---IRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------------PDPN-------------- 160 (223)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------------SSTT--------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------CCcC--------------
Confidence 12233344455678888888887530 0000
Q ss_pred CCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 048288 342 NPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNM 421 (732)
Q Consensus 342 ~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~ 421 (732)
+....|..|+||+++|+||+||||++|.+..|++++++.+++|++++|+.+|++
T Consensus 161 --------------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i 214 (223)
T 1orq_C 161 --------------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTV 214 (223)
T ss_dssp --------------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112368899999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 048288 422 QTYLTS 427 (732)
Q Consensus 422 ~~~l~~ 427 (732)
++.+++
T Consensus 215 ~~~~~~ 220 (223)
T 1orq_C 215 SNMFQK 220 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=170.45 Aligned_cols=142 Identities=24% Similarity=0.415 Sum_probs=121.0
Q ss_pred hHHHHhhCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe
Q 048288 475 EESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT 554 (732)
Q Consensus 475 e~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~ 554 (732)
.+++++.||++||.++..+++.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35599999999999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred cCCceeEeeeeecCCCCeeehhhhhhhcCC--CCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 048288 555 DGGRTGFYNRGLLKEGDFCGEELLTWALDP--KSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHT 631 (732)
Q Consensus 555 ~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~--~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~ 631 (732)
+.+ +..+.+|++||+.++ +.+ .+ +.++++|.++|+++.|++++|.++++++|++...+++..
T Consensus 85 ----~~~--~~~~~~G~~fG~~~~---~~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 ----DEV--VAILGKGDVFGDVFW---KEATLAQ------SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp ----TEE--EEEEETTCEEECCTT---TCSSCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred ----CEE--EEEecCCCEeCcHHH---hcCcccc------eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 234 789999999999987 544 34 789999999999999999999999999998887766654
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.77 E-value=1.1e-17 Score=190.00 Aligned_cols=298 Identities=12% Similarity=0.186 Sum_probs=150.1
Q ss_pred cCC-ChhHHHHHHHHHHHHHHHHhhhchhhhhhhccCCC----cc-------------cccCccchhHHHHHHHHHHHHH
Q 048288 95 DPQ-DRSLLLWNRLFVLSCIISVSIDPVFFYLLFFEKDN----HC-------------VSMEPKLGSAFTTLRTAFDLFY 156 (732)
Q Consensus 95 ~P~-s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~----~c-------------~~~d~~~~~~~~~~~~~~D~~f 156 (732)
+|. |...++|+.++++++++++++..+.-+ |...... .+ ..........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 567788898888888888888777632 2221110 00 0001113457889999999999
Q ss_pred HHHHHHhhccceecCCCcccCCCeEeeCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHH
Q 048288 157 LIHMIFQFHTAYIAPSSRVFGRGELVVDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNML 235 (732)
Q Consensus 157 ~lDi~l~F~tay~~~ss~~~~~G~lV~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l 235 (732)
.+|++++|.++-. .++|+++ |.++|+++++|+...+........+.........+|++|+
T Consensus 253 tiE~ilR~~~~~~-------------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRl 313 (514)
T 2r9r_B 253 SFEFLVRFFACPS-------------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRI 313 (514)
T ss_dssp HHHHHHHHHHSSC-------------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-------------------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Confidence 9999999987521 1479998 8999999999985443321111011100111233444433
Q ss_pred hhhHHHHHHHhhhHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhhhcCCCCCCCCCCccc
Q 048288 236 LQFFPRFFRVFPLISELKKIAGVFAESTLAGAAYYLFWYMFCSHIIGAAWYVFTVEDYIFCWKEICSETEPPTSGACEIL 315 (732)
Q Consensus 236 ~qyl~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~H~~~c~wyll~~~~~~~cw~~~c~~~~~~~~~~c~~y 315 (732)
++ ++|++|+.+....+......+.. ....+...+++.++..+++|+++|+.- .
T Consensus 314 lR-vlRilkL~r~~~~l~~l~~tl~~-s~~~l~~ll~~l~i~~~if~~~~~~~e--~----------------------- 366 (514)
T 2r9r_B 314 MR-ILRIFKLSRHSKGLQILGQTLKA-SMRELGLLIFFLFIGVILFSSAVYFAE--A----------------------- 366 (514)
T ss_dssp HG-GGGGGGGGGSCHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH--T-----------------------
T ss_pred HH-HHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhheee--c-----------------------
Confidence 22 33333333333333222211111 111112222333456777888777542 0
Q ss_pred cccCCCCccccccccccccccccccCCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCCCCCCC
Q 048288 316 LDCGSTGYQVFDDWKRANKEIFDDKCNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQGLKTTT 395 (732)
Q Consensus 316 l~~~~~~~~~~~~Wi~~~~~~l~~~c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGygd~~~~ 395 (732)
... .+.+..|..|+||+++||||+||||+.|.
T Consensus 367 --------~~~----------------------------------------~~~F~s~~~a~y~~~vT~TTvGYGDi~P~ 398 (514)
T 2r9r_B 367 --------DER----------------------------------------DSQFPSIPDAFWWAVVSMTTVGYGDMVPT 398 (514)
T ss_dssp --------TCT----------------------------------------TCSCSSHHHHHHHHHHHHTTCCCSSSCCC
T ss_pred --------cCC----------------------------------------CccccchhhhhheeeeEEEecccCCCCCC
Confidence 000 01234577899999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCh
Q 048288 396 SPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYEHFKWLETRGVDE 475 (732)
Q Consensus 396 ~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~~~~e 475 (732)
+..+++|+++++++|++++++.+|.+.+.++....+.++ ++..+..++++.-...|.....+ + ...+...+
T Consensus 399 t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~------~~~~~~~~ 469 (514)
T 2r9r_B 399 TIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K------SRSASTIS 469 (514)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------------------------------------------
T ss_pred CcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h------cccCCCcc
Confidence 999999999999999999999999999887776553322 11122223333333333322211 1 11223344
Q ss_pred HHHHhhCChhhHHHHHHHHHH
Q 048288 476 ESLVQSLPKDLRRDIKRHLCL 496 (732)
Q Consensus 476 ~~il~~LP~~Lr~~I~~~l~~ 496 (732)
+.-..+|...++.++......
T Consensus 470 ~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 470 KSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 555677777777766654433
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.76 E-value=1e-17 Score=165.23 Aligned_cols=155 Identities=17% Similarity=0.287 Sum_probs=131.3
Q ss_pred ChHHHHhhCChhh----HHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEE
Q 048288 474 DEESLVQSLPKDL----RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRL 549 (732)
Q Consensus 474 ~e~~il~~LP~~L----r~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v 549 (732)
-+....+.+++++ +.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|
T Consensus 12 ~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 12 HENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp CHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred ccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 3455566666665 344555666889999999999999999999999999999999999999999999999999999
Q ss_pred EEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHH
Q 048288 550 ESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQV 628 (732)
Q Consensus 550 ~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L 628 (732)
+++. ..+|++.+ +..+.+|++||+.++ +.+.+ +..+++|+++|+++.|++++|..++.++|++...++
T Consensus 92 ~v~~~~~~g~~~~--~~~~~~G~~fGe~~~---l~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 92 NVIKDIPNKGIQT--IAKVGAGAIIGEMSM---IDGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEEETTTEEEE--EEEEETTCEESHHHH---HHCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEECCCCCeEE--EEEccCCCeeeeHHH---hCCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 9965 45788888 889999999999987 55565 789999999999999999999999999998887777
Q ss_pred HHHHHhhhhhh
Q 048288 629 QHTFRFYSQQW 639 (732)
Q Consensus 629 ~~~~r~~s~~~ 639 (732)
+...+..++..
T Consensus 161 ~~l~~~l~~rl 171 (187)
T 3gyd_A 161 IRLLQLLTARF 171 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555444443
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.72 E-value=1.6e-17 Score=154.93 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=114.8
Q ss_pred hCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCcee
Q 048288 481 SLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTG 560 (732)
Q Consensus 481 ~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~ 560 (732)
++|..+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999954 454
Q ss_pred EeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHH
Q 048288 561 FYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSR 626 (732)
Q Consensus 561 ~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~ 626 (732)
+ +..+.+|++||+.++ +.+.+ +..+++|+++|+++.|++++|.++++++|.+..+
T Consensus 83 ~--~~~~~~G~~fGe~~~---l~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAI---LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHH---HHCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHH---HCCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3 789999999999987 55565 7899999999999999999999999999976543
No 10
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.72 E-value=3.6e-17 Score=161.43 Aligned_cols=148 Identities=8% Similarity=0.125 Sum_probs=118.3
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..++++++.|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 4577888999999999999999999999999999999999999999999999999965 46789988 88999999999
Q ss_pred hh-hhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 048288 575 EE-LLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRR 653 (732)
Q Consensus 575 e~-~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~ 653 (732)
|. ++ +.+.| +..+++|+++|+++.|++++|..++.++|++....+ ..+....++
T Consensus 84 e~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~----------------~~~~~~l~~ 138 (194)
T 3dn7_A 84 DYMAF---QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFR----------------LVYQKSFAA 138 (194)
T ss_dssp CHHHH---HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH----------------HHHHHHHHH
T ss_pred ehHHH---hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH----------------HHHHHHHHH
Confidence 87 55 55555 789999999999999999999999999996554333 333444444
Q ss_pred HHhhHHHHHHHHHHhhhh
Q 048288 654 RSIRKKQAEQRLKEVRER 671 (732)
Q Consensus 654 ~~~R~~~~~~~~~~ee~~ 671 (732)
..+| ........+++|.
T Consensus 139 ~~~~-~~~l~~~~~~~Rl 155 (194)
T 3dn7_A 139 AQLR-SKFQHMYSKEEQY 155 (194)
T ss_dssp HHHH-HHHHHHC------
T ss_pred HHHH-HHHHhcCCHHHHH
Confidence 4555 4444445555553
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.72 E-value=2.7e-17 Score=153.30 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=112.7
Q ss_pred HHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeE-eeeeecCCCCeee
Q 048288 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGF-YNRGLLKEGDFCG 574 (732)
Q Consensus 497 ~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~-~~~~~l~~Gd~fG 574 (732)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ .++..+.+|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 4688999999999999999999999999999999999999999999999999999653 4454432 1146899999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhh
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQ 638 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~ 638 (732)
+.++ +.+.+ +..+++|+++|+++.|++++|..++.++|++...+++...+..++.
T Consensus 86 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 86 VSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp GGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred hHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 9987 66665 7899999999999999999999999999999888888777766554
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.72 E-value=2e-17 Score=158.45 Aligned_cols=128 Identities=19% Similarity=0.254 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeee
Q 048288 487 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGL 566 (732)
Q Consensus 487 r~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~ 566 (732)
+.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 344455667889999999999999999999999999999999999999999999999999999998788898888 889
Q ss_pred cCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 567 LKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 567 l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
+.+|++||+.++ +.+.+ +..+++|+++|+++.|++++|..+++++|.+..
T Consensus 106 ~~~G~~fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 106 YDNRGSFGELAL---MYNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EESCCEECGGGG---TCCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred cCCCCEechHHH---HcCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999987 66666 789999999999999999999999999997543
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.70 E-value=3.1e-16 Score=157.12 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=111.6
Q ss_pred HhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehhh
Q 048288 499 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEEL 577 (732)
Q Consensus 499 L~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~~ 577 (732)
|+++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46889999999999999999999999999999999999999999999999999654 6788888 88999999999998
Q ss_pred hhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 578 LTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 578 l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
+ +.+.| +..+++|+++|+++.|++++|..++.++|++...+++...+.+
T Consensus 79 ~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 127 (216)
T 4ev0_A 79 L---LDEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRL 127 (216)
T ss_dssp H---HHCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred h---cCCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 7 55555 7899999999999999999999999999988877766665543
No 14
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.70 E-value=7.8e-17 Score=151.22 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=109.9
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
.++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++.. .+|++.+ +..+.+|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 45788999999999999999999999999999999999999999999999999999654 5688887 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHH
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQV 628 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L 628 (732)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++...++
T Consensus 82 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (149)
T 2pqq_A 82 ELSL---FDPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126 (149)
T ss_dssp GGGG---TSCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred hHHh---cCCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence 9987 56555 789999999999999999999999999997654443
No 15
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.69 E-value=9e-18 Score=156.03 Aligned_cols=127 Identities=80% Similarity=1.210 Sum_probs=110.2
Q ss_pred HHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeee--ecCCCCeee
Q 048288 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRG--LLKEGDFCG 574 (732)
Q Consensus 497 ~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~--~l~~Gd~fG 574 (732)
++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.+ +. .+.+|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~~~l~~G~~fG 83 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF--YNRSLLKEGDFCG 83 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSS--SCEEECCTTCBSS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCccee--eeeeeecCCCEec
Confidence 35789999999999999999999999999999999999999999999999999977667788877 55 999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
|.++++.+.+.|..+.|.++++++|+++|+++.|++++|.+++.++|+++.
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 998533366665333334689999999999999999999999999996543
No 16
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.68 E-value=3.4e-16 Score=147.80 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=109.7
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
.++++++++|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 56799999999999999999999999999999999999999999999999999999754 4688877 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
+.++ +.+.+ .+..+++|+++|+++.|++++|..++.++|++...+++...+
T Consensus 89 ~~~~---~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGG---GSSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhh---ccCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9987 44443 267899999999999999999999999999877766665444
No 17
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.67 E-value=3.8e-16 Score=157.96 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=138.8
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 45789999999999999999999999999999999999999999999999999999654 5788888 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRR 654 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~ 654 (732)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++...+++...+.+ +.....+........
T Consensus 83 ~~~~---~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----~~~~~~~~~l~~~~~ 149 (227)
T 3d0s_A 83 ELSI---FDPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRL----RRTNNNLADLIFTDV 149 (227)
T ss_dssp CHHH---HSCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHSCH
T ss_pred eHHH---cCCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH----HHHHHHHHHHhcCCH
Confidence 9987 66666 7899999999999999999999999999998887776655533 333333333344444
Q ss_pred HhhHHHHHHHHHHhhhh-c--cccccCCCCCCcchhhHHHHhHHHHH
Q 048288 655 SIRKKQAEQRLKEVRER-S--DYREVGNGDAPSRLRATVMASRFAAN 698 (732)
Q Consensus 655 ~~R~~~~~~~~~~ee~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (732)
..| .......-+++.. . +.......-++..++..+..+|=.-+
T Consensus 150 ~~R-l~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvs 195 (227)
T 3d0s_A 150 PGR-VAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVN 195 (227)
T ss_dssp HHH-HHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHH
T ss_pred HHH-HHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHH
Confidence 555 2222222222110 0 01111223445566666666665443
No 18
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.67 E-value=3.5e-16 Score=157.98 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=115.3
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fG 574 (732)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 4688999999999999999999999999999999999999999999999999999965 45688888 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
+.++ +.+.| .+..+++|+++|+++.|++++|..++.++|.+...+++...+..
T Consensus 86 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 86 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 138 (227)
T ss_dssp CTTT---TTTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH
T ss_pred eHHh---cCCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9987 55443 26789999999999999999999999999998877766665533
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.67 E-value=3.1e-16 Score=159.73 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=116.8
Q ss_pred HHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCee
Q 048288 495 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFC 573 (732)
Q Consensus 495 ~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~f 573 (732)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 46789999999999999999999999999999999999999999999999999999965 56788888 8899999999
Q ss_pred ehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHh
Q 048288 574 GEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRF 634 (732)
Q Consensus 574 Ge~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~ 634 (732)
|+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++...+++...+.
T Consensus 87 G~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 87 GEAVA---LRNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH 138 (237)
T ss_dssp CHHHH---HHTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHH---hcCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99987 55555 789999999999999999999999999998887776665553
No 20
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.67 E-value=1.3e-15 Score=152.86 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=114.2
Q ss_pred HHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCe--e
Q 048288 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDF--C 573 (732)
Q Consensus 497 ~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~--f 573 (732)
++++++|+|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+.+|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 578899999999999999999999999999999999999999999999999999965 56788888 889999999 6
Q ss_pred ehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 574 GEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 574 Ge~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
|+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++...+++...+.+
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF 133 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 88887 66666 7899999999999999999999999999998877766655533
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.67 E-value=1.1e-15 Score=155.08 Aligned_cols=129 Identities=21% Similarity=0.290 Sum_probs=115.7
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 46789999999999999999999999999999999999999999999999999999654 5788888 88999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
+.++ +.+.| +..+++|+++|+++.|++++|..++.++|++...+++...+.+
T Consensus 83 ~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 134 (231)
T 3e97_A 83 ETAV---LAHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRV 134 (231)
T ss_dssp TTTT---TCCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eHHH---hCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9987 66666 7899999999999999999999999999998887777666544
No 22
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.65 E-value=3e-15 Score=151.40 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=112.4
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 4578899999999999999999999999999999999999999999999999999965 56788888 88999999999
Q ss_pred hhhhhhhcCCC-CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHc-----HHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 048288 575 EELLTWALDPK-SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQF-----RRLHSRQVQHTFRFYSQQWRTWAACFIQ 648 (732)
Q Consensus 575 e~~l~~~l~~~-p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~-----p~l~~~~L~~~~r~~s~~~~~~~~~~~q 648 (732)
+.++ +.+. | +..+++|+++|+++.|++++|..++.++ |++...+++...+ ..+.....+..
T Consensus 88 ~~~~---~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~----~l~~~~~~~~~ 154 (230)
T 3iwz_A 88 EMGL---FIESDT------REVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK----RLLDTTRKASR 154 (230)
T ss_dssp CGGG---TSCCSB------CCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred ehhh---hcCCCC------ceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 9987 5443 4 7889999999999999999999999999 9877666665554 33343444444
Q ss_pred HHHHHHHhh
Q 048288 649 ATWRRRSIR 657 (732)
Q Consensus 649 ~~~~~~~~R 657 (732)
........|
T Consensus 155 l~~~~~~~R 163 (230)
T 3iwz_A 155 LAFLDVTDR 163 (230)
T ss_dssp HHHCCHHHH
T ss_pred HhcCCHHHH
Confidence 444445555
No 23
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.64 E-value=1.3e-15 Score=141.32 Aligned_cols=123 Identities=23% Similarity=0.395 Sum_probs=109.0
Q ss_pred HHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 495 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 495 ~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+ + ..+.+|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999997543 1 3689999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHh
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRF 634 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~ 634 (732)
+.++ +.+.+ +..+++|+++|+++.|++++|..++.++|++...+++...+.
T Consensus 81 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r 131 (138)
T 1vp6_A 81 EMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 131 (138)
T ss_dssp HHHH---HHCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ehHh---ccCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 9987 55555 789999999999999999999999999998877666655543
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.64 E-value=1.6e-15 Score=153.81 Aligned_cols=125 Identities=14% Similarity=0.261 Sum_probs=109.7
Q ss_pred hcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehhhh
Q 048288 500 RRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEELL 578 (732)
Q Consensus 500 ~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~~l 578 (732)
..+|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.+|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 3578999999999999999999999999999999999999999999999999654 4688888 889999999999987
Q ss_pred hhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 579 TWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 579 ~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
+.+.| +..+++|+++|+++.|++++|..++.++|++...+++...+.+
T Consensus 91 ---~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (232)
T 2gau_A 91 ---FAEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKEL 138 (232)
T ss_dssp ---HHTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ---hCCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 55555 7899999999999999999999999999998877777666544
No 25
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.63 E-value=1.8e-15 Score=143.83 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCC
Q 048288 492 RHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGD 571 (732)
Q Consensus 492 ~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd 571 (732)
.....++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+.+|+
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~ 106 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCC
Confidence 34457789999999999999999999999999999999999999999999999999999986 4442 67899999
Q ss_pred eeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 572 FCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 572 ~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
+||+.++ +.+.+ +.++++|+++|+++.|++++|..++.++|.+..
T Consensus 107 ~fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 107 SFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp EECCHHH---HHCCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred EeeehHh---hcCCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 9999987 55665 789999999999999999999999999996543
No 26
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.62 E-value=2.9e-15 Score=158.19 Aligned_cols=140 Identities=16% Similarity=0.263 Sum_probs=122.6
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec
Q 048288 476 ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD 555 (732)
Q Consensus 476 ~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~ 555 (732)
.....++|+..|.+...++..++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||++|.|+++.
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 344568999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHH
Q 048288 556 GGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQH 630 (732)
Q Consensus 556 ~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~ 630 (732)
+|+ . +..+.+|++|||.++ +.+.| ++++|+|.++|+++.|++++|..++.++|.........
T Consensus 96 ~g~--~--~~~~~~G~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~ 157 (299)
T 3shr_A 96 EGV--K--LCTMGPGKVFGELAI---LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYME 157 (299)
T ss_dssp TTE--E--EEEECTTCEESCSGG---GTTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCE--E--EEEeCCCCeeeHhHH---hcCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHH
Confidence 443 3 689999999999987 66666 88999999999999999999999999999655444333
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=4.3e-15 Score=151.16 Aligned_cols=129 Identities=12% Similarity=0.187 Sum_probs=114.3
Q ss_pred HHHHHhcCcccCCccHHHHHHHHhc--CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCC
Q 048288 495 CLNLVRRVPLFANMDERLLDAICER--LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGD 571 (732)
Q Consensus 495 ~~~lL~~v~lF~~ls~~~l~~L~~~--l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd 571 (732)
....++++|+|..++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+.+|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4567899999999999999999998 9999999999999999999999999999999964 56788888 88999999
Q ss_pred eeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 572 FCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 572 ~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
+||+.++ +.+.+ .+..+++|+++|+++.|++++|..++.++|++...+++...+
T Consensus 94 ~fG~~~~---~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 94 LIEPQSL---FGMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN 147 (232)
T ss_dssp EECGGGG---SSSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred eeeehHH---hCCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999987 55443 267999999999999999999999999999877766655444
No 28
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.61 E-value=1e-14 Score=145.25 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=112.9
Q ss_pred cccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehhhhhhh
Q 048288 503 PLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEELLTWA 581 (732)
Q Consensus 503 ~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~~l~~~ 581 (732)
++++.++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~--- 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL--- 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTT---
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHH---
Confidence 4667799999999999999999999999999999999999999999999654 6788888 889999999999987
Q ss_pred cCCC-CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 048288 582 LDPK-SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSIR 657 (732)
Q Consensus 582 l~~~-p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~R 657 (732)
+.+. | +..+++|+++|+++.|++++|..++.++|++...+++...+ ..+.....+..........|
T Consensus 77 ~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~R 143 (210)
T 3ryp_A 77 FEEGQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----RLQVTSEKVGNLAFLDVTGR 143 (210)
T ss_dssp TSTTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHHSCHHHH
T ss_pred hcCCCC------ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhhCCHHHH
Confidence 5554 4 78999999999999999999999999999887776665554 33333333344444445556
No 29
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.60 E-value=5.4e-15 Score=148.86 Aligned_cols=179 Identities=7% Similarity=0.082 Sum_probs=133.3
Q ss_pred HHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehh
Q 048288 497 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEE 576 (732)
Q Consensus 497 ~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~ 576 (732)
.+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +.++.+|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 35788999999999999999999999999999999999999999999999999997777899988 889999999998
Q ss_pred hhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 048288 577 LLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSI 656 (732)
Q Consensus 577 ~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~ 656 (732)
| +..+++|+++|+++.|++++|..++.++|++...+++...+.+ +.....+..........
T Consensus 81 ---------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 141 (220)
T 2fmy_A 81 ---------H------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL----KNSLTIINGLVFKDARL 141 (220)
T ss_dssp ---------C------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH----HHHHHHHHHHHTHHHHH
T ss_pred ---------c------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCHHH
Confidence 2 6789999999999999999999999999998877777665533 33333333444445555
Q ss_pred hHHHHHHHHHHhhh-h--ccccccCCCCCCcchhhHHHHhHHHHH
Q 048288 657 RKKQAEQRLKEVRE-R--SDYREVGNGDAPSRLRATVMASRFAAN 698 (732)
Q Consensus 657 R~~~~~~~~~~ee~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (732)
| ........+++. . .+.......-++..++..+..+|=.-+
T Consensus 142 R-l~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs 185 (220)
T 2fmy_A 142 R-LAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVS 185 (220)
T ss_dssp H-HHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHH
T ss_pred H-HHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHH
Confidence 5 332222222211 1 001111223445566666666655443
No 30
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.59 E-value=3e-14 Score=141.53 Aligned_cols=117 Identities=22% Similarity=0.310 Sum_probs=103.3
Q ss_pred ccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCC-
Q 048288 508 MDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPK- 585 (732)
Q Consensus 508 ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~- 585 (732)
|+++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++||+.++ +.+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~---~~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGL---FEKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTT---CC---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHH---hcCCC
Confidence 5889999999999999999999999999999999999999999965 45688888 889999999999987 5554
Q ss_pred ---CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 586 ---SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 586 ---p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
| +..+++|+++|+++.|++++|..++.++|++...+++...+.+
T Consensus 76 ~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 122 (207)
T 2oz6_A 76 SEQE------RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL 122 (207)
T ss_dssp --CB------CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCC------cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999999998877776655533
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.58 E-value=1e-14 Score=156.54 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=114.7
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 46889999999999999999999999999999999999999999999999999999654 45665 5 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhh
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYS 636 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s 636 (732)
|.++ +.+.| ++.+++|+++|+++.|++++|..++ ++|.+..++++...+...
T Consensus 89 e~~l---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 89 EIAL---LRDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHH---HHTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HHHh---cCCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 9987 55565 8899999999999999999999999 999998887776666554
No 32
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=141.43 Aligned_cols=124 Identities=17% Similarity=0.289 Sum_probs=106.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeC-CCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeE
Q 048288 483 PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCT-EGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGF 561 (732)
Q Consensus 483 P~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~-kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~ 561 (732)
||..|.+.......++++++++|..++++.++.++..++.+.|. +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 44445544445567789999999999999999999999999999 999999999999999999999999985 55664
Q ss_pred eeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEE-EEcccceEEEeCHHHHHHHHHHcH
Q 048288 562 YNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTV-RALAEVEAFALKAEELKFVAGQFR 621 (732)
Q Consensus 562 ~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv-~Al~~~ell~L~~~df~~ll~~~p 621 (732)
..+.+|++||+.++ +.+.+ +..++ +|+++|+++.|++++|..++++++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 35789999999987 66655 67788 999999999999999999987765
No 33
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.56 E-value=4.1e-14 Score=146.71 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=110.4
Q ss_pred CCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeeehhhhhhhcCC
Q 048288 506 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCGEELLTWALDP 584 (732)
Q Consensus 506 ~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 584 (732)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +.++.+|++||+.++ +.+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~---~~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTT---TST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHH---hCC
Confidence 5589999999999999999999999999999999999999999999654 6788888 889999999999987 555
Q ss_pred C-CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 048288 585 K-SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSIR 657 (732)
Q Consensus 585 ~-p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~R 657 (732)
. | +..+++|+++|+++.|++++|..++.++|++...+++...+. .+.....+..........|
T Consensus 130 ~~~------~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~----l~~~~~~~~~l~~~~~~~R 193 (260)
T 3kcc_A 130 GQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR----LQVTSEKVGNLAFLLVTGR 193 (260)
T ss_dssp TCB------CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH----HHHHHHHHHHHHHCCHHHH
T ss_pred CCC------CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHH
Confidence 4 4 789999999999999999999999999998877666655543 3333333333444444555
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=7.9e-15 Score=154.84 Aligned_cols=126 Identities=21% Similarity=0.426 Sum_probs=113.2
Q ss_pred HHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec--CCceeEeeeeecCCC
Q 048288 493 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD--GGRTGFYNRGLLKEG 570 (732)
Q Consensus 493 ~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~--~G~e~~~~~~~l~~G 570 (732)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++... +|++.+ +..+.+|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 445778899999999999999999999999999999999999999999999999999997765 788877 8899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHH
Q 048288 571 DFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQ 629 (732)
Q Consensus 571 d~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~ 629 (732)
++|||.++ +.+.| ++++|+|.++|+++.|++++|.+++.++|++..++++
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~ 280 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYE 280 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHH
Confidence 99999987 66666 8899999999999999999999999999965444433
No 35
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.56 E-value=1.5e-14 Score=145.92 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=106.9
Q ss_pred HHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhh
Q 048288 498 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEEL 577 (732)
Q Consensus 498 lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~ 577 (732)
+++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678999999999999999999999999999999999999999999999999998677899888 88999999999
Q ss_pred hhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 578 LTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 578 l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
.| +.++++|+++|+++.|++++|..++.++|.+...+++...+
T Consensus 76 -------~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 76 -------MH------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp -------SC------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -------CC------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 23 67999999999999999999999999999877766665554
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.53 E-value=2.4e-14 Score=143.59 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=100.5
Q ss_pred CcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhh
Q 048288 502 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTW 580 (732)
Q Consensus 502 v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~ 580 (732)
-|.|...++...+.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++||+.++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~-- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFI-- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGT--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHH--
Confidence 4778888999999999999999999999999999999999999999999965 46788888 889999999999987
Q ss_pred hcCCC-CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 581 ALDPK-SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 581 ~l~~~-p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
+.+. + +..+++|+++|+++.|++++|..++.++|++...+++...+
T Consensus 80 -~~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 126 (213)
T 1o5l_A 80 -FSSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 126 (213)
T ss_dssp -TSSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -hcCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 5443 4 78999999999999999999999999999887766665554
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=7.4e-14 Score=146.54 Aligned_cols=128 Identities=21% Similarity=0.346 Sum_probs=112.3
Q ss_pred HHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec-CC-ceeEeeeeecCCC
Q 048288 493 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD-GG-RTGFYNRGLLKEG 570 (732)
Q Consensus 493 ~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~-~G-~e~~~~~~~l~~G 570 (732)
.+...+++++++|..+++..+..++..++...|++|++|+++||+++.+|+|.+|.|+++... +| ++.. +..+++|
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G 230 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPS 230 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTT
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCC
Confidence 344567889999999999999999999999999999999999999999999999999996543 33 4555 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHH
Q 048288 571 DFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHT 631 (732)
Q Consensus 571 d~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~ 631 (732)
++|||.++ +.+.| ++++++|.++|+++.|++++|..++.++|++..+.++..
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 231 DYFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp CEECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred CEecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 99999987 66666 889999999999999999999999999998776655543
No 38
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=4.3e-14 Score=156.95 Aligned_cols=128 Identities=19% Similarity=0.255 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeee
Q 048288 487 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGL 566 (732)
Q Consensus 487 r~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~ 566 (732)
|.+-..+...+.++++++|++++++.+..|+..++.+.|++|++|+++||+++.+|||++|.|+++...+|++.+ +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 344456667889999999999999999999999999999999999999999999999999999998888888888 889
Q ss_pred cCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 567 LKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 567 l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
+.+|++|||.++ +.+.| +.++|+|+++|+++.|++++|..++.++|....
T Consensus 213 l~~G~~fGe~al---l~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 213 YDNRGSFGELAL---MYNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp EESCCEECGGGG---TSCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred ecCCCEEeeHHH---hcCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 999999999988 66666 899999999999999999999999999997654
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.1e-14 Score=145.09 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=108.2
Q ss_pred HHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 495 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 495 ~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|++ +..+.+|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 46789999999999999999999999999999999999999999999999999999975 3443 67899999999
Q ss_pred hhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHH
Q 048288 575 EELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTF 632 (732)
Q Consensus 575 e~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~ 632 (732)
|.++ +.+.| ++++++|.++|+++.|++++|..++.++|...........
T Consensus 79 e~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 127 (246)
T 3of1_A 79 ELAL---MYNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLL 127 (246)
T ss_dssp HHHH---HHTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHH
T ss_pred hhHH---hcCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHH
Confidence 9987 55565 7899999999999999999999999999966554444333
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=6.2e-14 Score=147.12 Aligned_cols=128 Identities=16% Similarity=0.261 Sum_probs=114.2
Q ss_pred HHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCC
Q 048288 491 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEG 570 (732)
Q Consensus 491 ~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~G 570 (732)
..+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ . +..+.+|
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G 106 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEG 106 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTT
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCC
Confidence 345567899999999999999999999999999999999999999999999999999999986 443 3 6899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 571 DFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 571 d~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
++|||.++ +.+.| +.++++|.++|+++.|++++|..++.++|.+..+.+....+
T Consensus 107 ~~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 107 GSFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp CEECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999987 66666 88999999999999999999999999999887766665554
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.4e-14 Score=143.95 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=106.7
Q ss_pred HHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCee
Q 048288 494 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFC 573 (732)
Q Consensus 494 l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~f 573 (732)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++..+++ . +..+.+|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456788999999999999999999999999999999999999999999999999999876554 3 7899999999
Q ss_pred ehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHH
Q 048288 574 GEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHS 625 (732)
Q Consensus 574 Ge~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~ 625 (732)
||.++ +.+.| ++++++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~---~~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVAL---LNDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHH---HHTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHH---hCCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 99987 55666 889999999999999999999999999997543
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=153.09 Aligned_cols=131 Identities=20% Similarity=0.325 Sum_probs=114.2
Q ss_pred HHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec--CCceeEeeeeecCCC
Q 048288 493 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD--GGRTGFYNRGLLKEG 570 (732)
Q Consensus 493 ~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~--~G~e~~~~~~~l~~G 570 (732)
.++..+++++++|..+++..+..++..++...|.+|++|+++||+++.+|||.+|.|+++... ++++.. +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 445678889999999999999999999999999999999999999999999999999997653 333555 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHh
Q 048288 571 DFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRF 634 (732)
Q Consensus 571 d~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~ 634 (732)
++|||.++ +.+.| ++++|+|+++|+++.|++++|..++..+|++..+.+++.-++
T Consensus 322 d~fGe~al---l~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~ 376 (381)
T 4din_B 322 DYFGEIAL---LLNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSF 376 (381)
T ss_dssp CEECTTGG---GSCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHH
T ss_pred CEechHHH---hCCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999998 66666 889999999999999999999999999998766655544333
No 43
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.47 E-value=1.5e-13 Score=131.05 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 048288 370 FSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEE 434 (732)
Q Consensus 370 ~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e 434 (732)
...|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.++
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999999999999999999999999999999999999999999887654433
No 44
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.47 E-value=1.5e-13 Score=141.26 Aligned_cols=123 Identities=10% Similarity=0.084 Sum_probs=106.7
Q ss_pred HhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhh
Q 048288 499 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEEL 577 (732)
Q Consensus 499 L~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~ 577 (732)
+.....+..++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++.+|++||+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC--
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee--
Confidence 3444455899999999999999999999999999999999999999999999965 46789888 889999999999
Q ss_pred hhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 048288 578 LTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFY 635 (732)
Q Consensus 578 l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~ 635 (732)
+ +.+. +..+++|+++|+++.|++++|..++.++|++...+++...+.+
T Consensus 87 ~---l~~~-------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 134 (250)
T 3e6c_C 87 L---YPTG-------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKV 134 (250)
T ss_dssp C---SCCS-------CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred e---cCCC-------CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3 3322 4689999999999999999999999999998877776666543
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=150.92 Aligned_cols=130 Identities=15% Similarity=0.235 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecC
Q 048288 489 DIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLK 568 (732)
Q Consensus 489 ~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~ 568 (732)
+-.+....+.++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..+.
T Consensus 122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~ 195 (381)
T 4din_B 122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNIS 195 (381)
T ss_dssp HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEE
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCC
Confidence 33445567899999999999999999999999999999999999999999999999999999985 4442 67899
Q ss_pred CCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 569 EGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 569 ~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
+|++|||.++ +.+.| +.++++|+++|+++.|++++|..++.++|....+.+....+
T Consensus 196 ~G~~fGe~al---l~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 196 EGGSFGELAL---IYGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp SSCCBCGGGG---TSCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEchHH---hcCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 9999999988 66666 88999999999999999999999999999776655544433
No 46
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.45 E-value=8.4e-13 Score=135.20 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCe---eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCC
Q 048288 510 ERLLDAICERLK---PSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPK 585 (732)
Q Consensus 510 ~~~l~~L~~~l~---~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~ 585 (732)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +.++.+|++||+.++ +.+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~---~~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSL---LTGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHH---HSSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHH---hCCC
Confidence 677888888888 99999999999999999999999999999965 56788888 889999999999987 5555
Q ss_pred CCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 586 SSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 586 p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
|. .+..+++|+++|+++.|++++|..++.++|++...+++...+
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 41 134899999999999999999999999999988777666554
No 47
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.44 E-value=1.9e-12 Score=132.08 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=106.9
Q ss_pred CCccHHHHHHHHh--cCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhc
Q 048288 506 ANMDERLLDAICE--RLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWAL 582 (732)
Q Consensus 506 ~~ls~~~l~~L~~--~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l 582 (732)
++++++.++.++. .++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +.++ +|++||+.++ +
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~---~ 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGF---I 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBC---T
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhh---h
Confidence 3678999999885 59999999999999999999999999999999965 56788888 7788 9999999987 5
Q ss_pred CCCCCCCCCc-cccEEEEc-ccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 048288 583 DPKSSTNLPL-STRTVRAL-AEVEAFALKAEELKFVAGQFRRLHSRQVQHTFRFYSQQWRTWAACFIQATWRRRSIR 657 (732)
Q Consensus 583 ~~~p~~~~p~-s~~tv~Al-~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r~~s~~~~~~~~~~~q~~~~~~~~R 657 (732)
.+.+ . +.+++.|+ ++|+++.|++++|..++.++|++...+++...+.+ +.....+..........|
T Consensus 76 ~~~~-----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~R 143 (238)
T 2bgc_A 76 DTET-----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQV----SYSLAKFNDFSINGKLGS 143 (238)
T ss_dssp TTCC-----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHTTHHHHH
T ss_pred cCCC-----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHccCHHHH
Confidence 5543 1 25778888 59999999999999999999998887777665533 333333333344444555
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.43 E-value=2.3e-13 Score=151.11 Aligned_cols=120 Identities=13% Similarity=0.290 Sum_probs=105.5
Q ss_pred HHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecC-------CceeEeeeeecC
Q 048288 496 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDG-------GRTGFYNRGLLK 568 (732)
Q Consensus 496 ~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~-------G~e~~~~~~~l~ 568 (732)
..+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++.... |++.+ +..++
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l~ 343 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARCF 343 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEEC
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEeC
Confidence 4567788999999999999999999999999999999999999999999999999976543 77777 88999
Q ss_pred CCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHH
Q 048288 569 EGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSR 626 (732)
Q Consensus 569 ~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~ 626 (732)
+|++|||.++ +.+.| ++++|+|+++|+++.|++++|..++..+|++..+
T Consensus 344 ~G~~fGE~al---l~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~ 392 (416)
T 3tnp_B 344 RGQYFGELAL---VTNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKR 392 (416)
T ss_dssp TTCEESGGGG---TCCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTC
T ss_pred CCCEecHHHH---hCCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHH
Confidence 9999999998 66666 8999999999999999999999999999976443
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.43 E-value=5e-13 Score=150.19 Aligned_cols=137 Identities=17% Similarity=0.208 Sum_probs=119.8
Q ss_pred hCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCc-
Q 048288 481 SLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGR- 558 (732)
Q Consensus 481 ~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~- 558 (732)
..|+..|.+.......+.++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 35777788888888899999999999999999999999999999999999999999999999999999999654 4554
Q ss_pred -eeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHH
Q 048288 559 -TGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQ 629 (732)
Q Consensus 559 -e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~ 629 (732)
+.+ +..+.+|++||+.+ + .+.| ++++++|.++|+++.|++++|..++.++|++...+++
T Consensus 106 ~~~~--~~~~~~G~~fGe~~-l---~~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 106 DAVT--ICTLGIGTAFGESI-L---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp GCEE--EEEECTTCEECGGG-G---GTCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred cceE--EEEccCCCCcchhh-h---CCCC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 356 78999999999987 3 3344 7899999999999999999999999999986554443
No 50
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.43 E-value=1.8e-12 Score=122.93 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hhHHHHHHHHHHHHH
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQT------YLTS----LTVRLEEMRIKRRDS 442 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~------~l~~----~~~~~~e~r~k~~~~ 442 (732)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++++.. +.+. .+.+..+.+.+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999999999999999999999986 3332 244555667788899
Q ss_pred HHHHHhCCCCHHHHHH
Q 048288 443 EQWMHHRWLPQDLRER 458 (732)
Q Consensus 443 ~~~m~~~~lp~~L~~r 458 (732)
+++|+.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.40 E-value=7.9e-13 Score=148.57 Aligned_cols=120 Identities=13% Similarity=0.209 Sum_probs=104.9
Q ss_pred HHHHHHHhcCcccCCccHHHHHHHHhcCee-EEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCC
Q 048288 493 HLCLNLVRRVPLFANMDERLLDAICERLKP-SLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGD 571 (732)
Q Consensus 493 ~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~-~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd 571 (732)
....+.++++++|.+++++.+..++..+.. +.|++|++|+++||+++.+|||.+|.|+++...+ . + +..+.+|+
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~-~--~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G-V--VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E-E--EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e-e--EEEecCCC
Confidence 345678999999999999999999999985 4999999999999999999999999999986432 2 3 78999999
Q ss_pred eeehhhhhhhcCCCCCCCCCccccEEEEcc-cceEEEeCHHHHHHHHHHcHHHHHH
Q 048288 572 FCGEELLTWALDPKSSTNLPLSTRTVRALA-EVEAFALKAEELKFVAGQFRRLHSR 626 (732)
Q Consensus 572 ~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~-~~ell~L~~~df~~ll~~~p~l~~~ 626 (732)
+|||.++ +.+.| ++++|+|++ +|+++.|++++|..++.++|++..+
T Consensus 408 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~ 454 (469)
T 1o7f_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVR 454 (469)
T ss_dssp EECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC---
T ss_pred EEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHH
Confidence 9999988 66666 899999999 7999999999999999999975543
No 52
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.39 E-value=4.3e-13 Score=125.46 Aligned_cols=92 Identities=10% Similarity=0.218 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCCC
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLP 452 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~r~k~~~~~~~m~~~~lp 452 (732)
|..|+||++.|+|||||||++|.+..|++++++.+++|++++|+++|.+++.+.....+.++.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 67899999999999999999999999999999999999999999999999998776555444333333333334445666
Q ss_pred HHHHHHHHHHHH
Q 048288 453 QDLRERVRRYEH 464 (732)
Q Consensus 453 ~~L~~rVr~y~~ 464 (732)
.+....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.32 E-value=7.6e-12 Score=114.63 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 048288 371 SKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTV 430 (732)
Q Consensus 371 ~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 430 (732)
..|..|+||++.|++|+||||++|.+..+++++++.+++|+.++++.+|++++.+++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999876543
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.31 E-value=8.3e-12 Score=153.33 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=112.3
Q ss_pred HHHhhCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec-
Q 048288 477 SLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD- 555 (732)
Q Consensus 477 ~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~- 555 (732)
..|+.-| .-|.+--..+....|+++++|.++++..+.+||.+++...|++|++|+++||+++.+|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3445544 33433333445678999999999999999999999999999999999999999999999999999997643
Q ss_pred --CCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHHHHHHHHHcHHHH
Q 048288 556 --GGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEELKFVAGQFRRLH 624 (732)
Q Consensus 556 --~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~df~~ll~~~p~l~ 624 (732)
++.+.. +..+.+|+.||| ++ +.+.| +++||+|.++|++++|++++|+.++.++|+..
T Consensus 102 ~~~~~~~~--v~~l~~G~sFGE-al---l~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 SSHQDAVT--ICTLGIGTAFGE-SI---LDNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SCTTSCEE--EEEEETTCEECG-GG---GGTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcee--EEEecCCcchhh-hh---ccCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 234444 789999999999 55 55666 89999999999999999999999999998744
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=7.4e-12 Score=147.14 Aligned_cols=133 Identities=14% Similarity=0.244 Sum_probs=112.9
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHHhcCcccCCccHHHHHHHHhcCe-eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe
Q 048288 476 ESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLK-PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT 554 (732)
Q Consensus 476 ~~il~~LP~~Lr~~I~~~l~~~lL~~v~lF~~ls~~~l~~L~~~l~-~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~ 554 (732)
..+++..|. .|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 456654444 455444455678899999999999999999999998 789999999999999999999999999999865
Q ss_pred cCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcc-cceEEEeCHHHHHHHHHHcHHH
Q 048288 555 DGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA-EVEAFALKAEELKFVAGQFRRL 623 (732)
Q Consensus 555 ~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~-~~ell~L~~~df~~ll~~~p~l 623 (732)
|+ .+ +.++.+|++|||.++ +.+.+ +.++++|++ +|+++.|++++|.+++.++|.+
T Consensus 91 --g~-~i--l~~l~~Gd~fGe~al---~~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 --GK-GV--VCTLHEGDDFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp --TT-EE--EEEEETTCEECHHHH---HHTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred --CC-EE--EEEeCCCCEeehHHH---hCCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 33 44 789999999999987 55555 789999999 5999999999999999988874
No 56
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.25 E-value=2.7e-11 Score=119.38 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=80.8
Q ss_pred EEeCCCCEEEecCCCCCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcc
Q 048288 523 SLCTEGTCVVREGDPVDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601 (732)
Q Consensus 523 ~~~~kge~I~~eGd~~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~ 601 (732)
+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+.+|++||+ ++ +.+.| +..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCC------ceeEEEECC
Confidence 5799999999999999999999999999965 45788888 889999999999 87 66666 789999999
Q ss_pred cceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 602 EVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 602 ~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
+|+++.|++++|. |++...+++...+
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~ 95 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLAR 95 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHH
Confidence 9999999999998 7776666555444
No 57
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.20 E-value=7.4e-11 Score=110.60 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhCC
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL-EEMRIKRRDSEQWMHHRW 450 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~-~e~r~k~~~~~~~m~~~~ 450 (732)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+.....+. ++++.+.+.....+-+++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998876554333 333333333333333333
Q ss_pred CCHHHHHHHHH
Q 048288 451 LPQDLRERVRR 461 (732)
Q Consensus 451 lp~~L~~rVr~ 461 (732)
+ .++++++.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 3 445555544
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=7.7e-11 Score=144.75 Aligned_cols=115 Identities=13% Similarity=0.215 Sum_probs=101.5
Q ss_pred HHHHHHHhcCcccCCccHHHHHHHHhcCeeEE-eCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCC
Q 048288 493 HLCLNLVRRVPLFANMDERLLDAICERLKPSL-CTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGD 571 (732)
Q Consensus 493 ~l~~~lL~~v~lF~~ls~~~l~~L~~~l~~~~-~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd 571 (732)
+...+.+.++|.|++++...+..++..+.... +++|++|++|||.++.+|||++|.|+++...+|. ++.+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 34567889999999999999999999999654 5789999999999999999999999998654433 68899999
Q ss_pred eeehhhhhhhcCCCCCCCCCccccEEEEccc-ceEEEeCHHHHHHHHHHcH
Q 048288 572 FCGEELLTWALDPKSSTNLPLSTRTVRALAE-VEAFALKAEELKFVAGQFR 621 (732)
Q Consensus 572 ~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~-~ell~L~~~df~~ll~~~p 621 (732)
+|||.++ +.+.| +.+||+|.++ |++++++++||.+++.+-.
T Consensus 408 ~FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999998 88887 9999999985 9999999999999997743
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.16 E-value=8.1e-11 Score=116.58 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=80.2
Q ss_pred HhcCeeEEeCCCCEEEecCCCC--CeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCcc
Q 048288 517 CERLKPSLCTEGTCVVREGDPV--DEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLS 593 (732)
Q Consensus 517 ~~~l~~~~~~kge~I~~eGd~~--~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s 593 (732)
...++.+.|++|++|+++||++ +.+|||.+|.|+++. ..+|++.+ +.++.+|++||+ ++ +.+.| +
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~---l~~~~------~ 69 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EA---LFGQE------R 69 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HH---HHTCC------B
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hh---cCCCC------c
Confidence 4567889999999999999999 999999999999965 45788888 889999999999 66 44555 7
Q ss_pred ccEEEEcccceEEEeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 048288 594 TRTVRALAEVEAFALKAEELKFVAGQFRRLHSRQVQHTFR 633 (732)
Q Consensus 594 ~~tv~Al~~~ell~L~~~df~~ll~~~p~l~~~~L~~~~r 633 (732)
..+++|+++|+++.| +++|. |++...+++...+
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 899999999999999 98886 7666655554443
No 60
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.07 E-value=1.2e-09 Score=114.74 Aligned_cols=206 Identities=11% Similarity=0.092 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEe
Q 048288 103 LWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELV 182 (732)
Q Consensus 103 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV 182 (732)
.++.+++++.++++++..+..+ +. .+......+..++.++-++|.+|+++++... |
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~-~~---------~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~-----------~--- 86 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETS-KT---------FMQSFGVYTTLFNQIVITIFTIEIILRIYVH-----------R--- 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-TT---------HHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT-----------G---
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------h---
Confidence 6677777777777776655421 10 1122345678899999999999999999653 2
Q ss_pred eCHHHHHHHHhhh-hhHhHhhhccChhhHHhhhhccCCcchHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHhhHHHH
Q 048288 183 VDPAMIARRYLRH-HFIVDFLSVLPVPQLMVWSFLSGGYVDVLSLKDAMQVNMLLQFFPRFFRVFPLISELKKIAGVFAE 261 (732)
Q Consensus 183 ~d~~~Ia~rYlk~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lr~i~l~qyl~Rl~ri~~l~~~l~~~~~~~~~ 261 (732)
++|+++ |-++|+++++|.. ++..+ . .+.+|++|+++ +.|+.|..+-.+.+.++......
T Consensus 87 -------~~y~~~~wn~~Dl~~v~~~~-------i~~~~--~---~~~lr~~RilR-~lrl~~~~~~l~~l~~~l~~~~~ 146 (285)
T 3rvy_A 87 -------ISFFKDPWSLFDFFVVAISL-------VPTSS--G---FEILRVLRVLR-LFRLVTAVPQMRKIVSALISVIP 146 (285)
T ss_dssp -------GGGGGCHHHHHHHHHHHHHH-------SCSSS--S---CTHHHHHGGGG-GGHHHHSSTTHHHHHHHHHHHGG
T ss_pred -------HHHHcCChHHhHHHHHHHHH-------Hcccc--h---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 479987 8899999888752 12111 1 23345444333 44555555544444332211111
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhHhhhhcCCCCCCCCCCccccccCCCCcccccccccccccccccc
Q 048288 262 STLAGAAYYLFWYMFCSHIIGAA-WYVFTVEDYIFCWKEICSETEPPTSGACEILLDCGSTGYQVFDDWKRANKEIFDDK 340 (732)
Q Consensus 262 ~~~~~~~~~ll~~~l~~H~~~c~-wyll~~~~~~~cw~~~c~~~~~~~~~~c~~yl~~~~~~~~~~~~Wi~~~~~~l~~~ 340 (732)
.....+..+++ +.-++|++ +++.+ ..
T Consensus 147 -~l~~~~~~~~~---~~~~fa~~g~~~f~----------------------------------~~--------------- 173 (285)
T 3rvy_A 147 -GMLSVIALMTL---FFYIFAIMATQLFG----------------------------------ER--------------- 173 (285)
T ss_dssp -GGHHHHHHHHH---HHHHHHHHHHHHHT----------------------------------TT---------------
T ss_pred -HHHHHHHHHHH---HHHHHHHHHHHHhC----------------------------------cc---------------
Confidence 11111111111 11112211 11111 00
Q ss_pred CCCCCCCCCcchhhhHHhhhhccccCcchHHHHHHHHHHHHHHhhccCCC-CCC-CCChh----hHHHHHHHHHHHHHHH
Q 048288 341 CNPNSLNSEFNFGIYLQAIESEIHTSKNFFSKFFYCFWFGLQNLSTLGQG-LKT-TTSPK----EVIFSIAVGVAGLVLL 414 (732)
Q Consensus 341 c~~~~~~~~f~~gi~~~al~~~~~~~~~~~~~Y~~slywal~tlstvGyg-d~~-~~~~~----E~if~i~i~i~G~~lf 414 (732)
.++.+..+..|+||+++++||+||| |+. |.+.. -..|++++++.|.++.
T Consensus 174 -------------------------~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~l 228 (285)
T 3rvy_A 174 -------------------------FPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMI 228 (285)
T ss_dssp -------------------------CHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred -------------------------cccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHH
Confidence 0123556778999999999999999 885 55443 3789999999999999
Q ss_pred HHHHHHHHHHHHhhhH
Q 048288 415 ALLIGNMQTYLTSLTV 430 (732)
Q Consensus 415 a~lIg~~~~~l~~~~~ 430 (732)
+..+|.+.+.++....
T Consensus 229 nl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 229 NLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888765543
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.02 E-value=2e-09 Score=97.16 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL 432 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 432 (732)
|..|+||++.|++|+||||++|.+..+++++++.+++|+.++++.++.+.+.++......
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999886554433
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.94 E-value=5.1e-09 Score=91.70 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTS 427 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~ 427 (732)
|..|+||++.|++|+||||+.|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5679999999999999999999999999999999999999999999999988764
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.93 E-value=4.1e-10 Score=99.91 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTV 430 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 430 (732)
.|..|+||++.|++|+||||++|.+..+++++++.+++|+.++++++|.+.+.+.....
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999988876543
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.82 E-value=7.7e-09 Score=87.64 Aligned_cols=54 Identities=17% Similarity=0.385 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYL 425 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l 425 (732)
.|..|+||++.|++|+||||+.|.+..+++++++.+++|+.++++.++++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.82 E-value=3.1e-10 Score=109.62 Aligned_cols=65 Identities=15% Similarity=0.337 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 048288 370 FSKFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVRLEE 434 (732)
Q Consensus 370 ~~~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e 434 (732)
...|..|+||+++|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.....+..+
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999998876554443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.61 E-value=7.7e-08 Score=101.42 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTS 427 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~ 427 (732)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+..
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999999999999999999988877643
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.57 E-value=1.7e-07 Score=98.58 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSL 428 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~ 428 (732)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999988653
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.50 E-value=1.7e-07 Score=99.91 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLT 429 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~ 429 (732)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999998876554
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.46 E-value=5e-07 Score=95.96 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTV 430 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 430 (732)
.|..|+||++.|+||+||||+.|.+...++++++.+++|++++|+++|.+.+.+.....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46679999999999999999999999999999999999999999999999988776443
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.39 E-value=1.6e-06 Score=92.16 Aligned_cols=60 Identities=25% Similarity=0.490 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTT--SPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLTVR 431 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~--~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 431 (732)
.+..++||++.|+||+||||..|+ +...++++++.+++|+++.|+++|.+.+-+.....+
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 355699999999999999999997 688999999999999999999999988777655444
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.24 E-value=4.3e-06 Score=96.12 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGN-MQTYLT 426 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~-~~~~l~ 426 (732)
|+.|+||++.|+||+||||++|.+..+++|+++++++|++++++.++. +.+++.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998 554443
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.20 E-value=2.3e-06 Score=88.61 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTS 427 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~ 427 (732)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+...+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999876543
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.20 E-value=8.4e-07 Score=93.28 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEV------IFSIAVGVAGLVLLALLIGNMQTYLTSLTVRL 432 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~------if~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 432 (732)
.|+.|+||++.|+|||||||+.|.+..++ +++++.+++|+.+++++++.+++.+.....+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999988886 59999999999999999999999887765443
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.16 E-value=6.7e-06 Score=87.59 Aligned_cols=59 Identities=20% Similarity=0.495 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048288 371 SKFFYCFWFGLQNLSTLGQGLKTTT--SPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSLT 429 (732)
Q Consensus 371 ~~Y~~slywal~tlstvGygd~~~~--~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~ 429 (732)
..+..+|||++.|+||+||||..|+ +....+++.+.+++|+++.|+.+|.+.+-+..-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4567799999999999999999864 8999999999999999999999998887665543
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.06 E-value=3e-06 Score=87.82 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048288 373 FFYCFWFGLQNLSTLGQGLKTTTSPK-------EVIFSIAVGVAGLVLLALLIGNMQTYLTSLT 429 (732)
Q Consensus 373 Y~~slywal~tlstvGygd~~~~~~~-------E~if~i~i~i~G~~lfa~lIg~~~~~l~~~~ 429 (732)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999885 4999999999999999999999998876643
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.05 E-value=0.00013 Score=73.61 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEe
Q 048288 103 LWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELV 182 (732)
Q Consensus 103 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV 182 (732)
.++.++.++.+++++..-+.-+ ..+......+..++.++-++|.+++++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~~-----------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATTY-----------ELDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCCS-----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHccC-----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 5677777777878776555421 12233455678899999999999999998652 1
Q ss_pred eCHHHHHHHHhhh-hhHhHhhhccCh
Q 048288 183 VDPAMIARRYLRH-HFIVDFLSVLPV 207 (732)
Q Consensus 183 ~d~~~Ia~rYlk~-~F~iDlls~lPl 207 (732)
-.++|+++ |-++|++.++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 12578887 889998877654
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.87 E-value=1.1e-06 Score=94.11 Aligned_cols=57 Identities=16% Similarity=0.389 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTSL 428 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~~ 428 (732)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355699999999999999999999999999999999999999999999998877654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.69 E-value=0.00025 Score=66.52 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeEe
Q 048288 103 LWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGELV 182 (732)
Q Consensus 103 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~lV 182 (732)
.|+.+++++.++++++.-+..+.+. +......+..++.++-++|.+|.++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i----------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 4677777777777766665533221 1223446778999999999999999997752
Q ss_pred eCHHHHHHHHhhhhhHhHhhhccChhhH
Q 048288 183 VDPAMIARRYLRHHFIVDFLSVLPVPQL 210 (732)
Q Consensus 183 ~d~~~Ia~rYlk~~F~iDlls~lPl~~i 210 (732)
| .++|+++ -++|++|++|+...
T Consensus 78 -~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 -D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 1 3578887 68999999998543
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.36 E-value=0.0012 Score=60.73 Aligned_cols=78 Identities=8% Similarity=0.096 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhccCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCcccCCCeE
Q 048288 102 LLWNRLFVLSCIISVSIDPVFFYLLFFEKDNHCVSMEPKLGSAFTTLRTAFDLFYLIHMIFQFHTAYIAPSSRVFGRGEL 181 (732)
Q Consensus 102 ~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~~D~~f~lDi~l~F~tay~~~ss~~~~~G~l 181 (732)
+.++.+++++.++++++.-+..+ |. .+......+..++.++-++|.+|+++++..+- +
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~---------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~---~--------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG---D--------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---S---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C---------
Confidence 34677777777777766655532 11 12223456788999999999999999998642 1
Q ss_pred eeCHHHHHHHHhhhhhHhHhhhccChhh
Q 048288 182 VVDPAMIARRYLRHHFIVDFLSVLPVPQ 209 (732)
Q Consensus 182 V~d~~~Ia~rYlk~~F~iDlls~lPl~~ 209 (732)
.++|++ |-++|+++++|+..
T Consensus 64 -------~~~y~~-~niiDllailp~~~ 83 (132)
T 1ors_C 64 -------PAGYVK-KTLYEIPALVPAGL 83 (132)
T ss_dssp -------TTTTTT-TCGGGTGGGSCHHH
T ss_pred -------HHHHHH-HHHHHHHHHHHHHH
Confidence 147899 99999999999853
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=72.71 E-value=11 Score=36.96 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=53.0
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEE
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRA 599 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~A 599 (732)
+....+.+|+.+=..-.+.+.+++|++|.+++... |+ ...+.+||++= +.+. ....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLE-------ITAN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEE-------ECSS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 44567899999988888899999999999998753 44 35789998763 3222 3578999
Q ss_pred cccceEEEe
Q 048288 600 LAEVEAFAL 608 (732)
Q Consensus 600 l~~~ell~L 608 (732)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.04 E-value=16 Score=31.49 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=47.7
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEE
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRA 599 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~A 599 (732)
+....+++|..+-..-.+.+++++|++|.+++.. +|+ ...+.+||.+- +.+. ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLY-------LGAG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CcEEEEe
Confidence 3455778888887666677899999999999865 344 35799999874 3222 3467888
Q ss_pred cccceEEE
Q 048288 600 LAEVEAFA 607 (732)
Q Consensus 600 l~~~ell~ 607 (732)
.++++++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88877554
No 82
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=66.29 E-value=5.2 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048288 640 RTWAACFIQATWRRRSIR 657 (732)
Q Consensus 640 ~~~~~~~~q~~~~~~~~R 657 (732)
+.+++..||.+|+++..|
T Consensus 5 Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678999999999999865
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=65.36 E-value=19 Score=30.63 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=42.0
Q ss_pred EeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccc
Q 048288 524 LCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEV 603 (732)
Q Consensus 524 ~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ 603 (732)
.+.+|..+-....+..++++|++|.+++.. +|+ ...+.+||.+= +.+. ....+++.+++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------i~~~-------~~H~~~~~~~~ 102 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLM-------VPAH-------KIHAIAGKGRF 102 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCBEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEE-------ECCC-------CcEEEEeCCCc
Confidence 456666554445567899999999998754 344 35799999763 3222 23556666777
Q ss_pred eEEEe
Q 048288 604 EAFAL 608 (732)
Q Consensus 604 ell~L 608 (732)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 84
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=64.38 E-value=5.7 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 048288 639 WRTWAACFIQATWRRRSIR 657 (732)
Q Consensus 639 ~~~~~~~~~q~~~~~~~~R 657 (732)
=+.|++.+||.+||++.-|
T Consensus 4 ~Ee~aA~vIQrA~R~yl~r 22 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQ 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999876
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=60.94 E-value=39 Score=28.54 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=45.7
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEE
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRA 599 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~A 599 (732)
+....+.+|..+-.--.+..++++|++|.+++.. +|+ ...+.+||.+= +.+. ....+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFF-------VPPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEE-------ECcC-------CceeeEe
Confidence 3445678887754434456789999999998865 344 35799999863 3222 2456777
Q ss_pred cccceEEEe
Q 048288 600 LAEVEAFAL 608 (732)
Q Consensus 600 l~~~ell~L 608 (732)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 778877766
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=59.95 E-value=37 Score=28.65 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=45.0
Q ss_pred eeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEc
Q 048288 521 KPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRAL 600 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al 600 (732)
....+.+|..+-..-....++++|++|.+.+.. +|+ ...+.+||++- +.+. ....+++.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIV-------MPAG-------IPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------SCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CCEEEEEC
Confidence 445677888765444456799999999998864 344 35789999874 3222 23567777
Q ss_pred ccceEEEe
Q 048288 601 AEVEAFAL 608 (732)
Q Consensus 601 ~~~ell~L 608 (732)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 77777654
No 87
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.80 E-value=21 Score=31.31 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=33.7
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+.+|..+-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 4567788766443 377899999999999865 454 35799999874
No 88
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=57.16 E-value=24 Score=33.35 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=38.5
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcc-cceEEEeCHH
Q 048288 537 PVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA-EVEAFALKAE 611 (732)
Q Consensus 537 ~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~-~~ell~L~~~ 611 (732)
+.++++++++|.+.+...++|+.. ...+++||+|= +... -..+-++-+ ++..+.+.+.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~-------lP~g-------vpH~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL-------LPPH-------VRHSPQRPEAGSACLVIERQ 112 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE-------ECTT-------CCEEEEBCCTTCEEEEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE-------eCCC-------CCcCccccCCCCEEEEEEeC
Confidence 568999999999999776666433 35799999984 2222 123444555 6766666543
No 89
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=54.27 E-value=12 Score=43.95 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048288 372 KFFYCFWFGLQNLSTLGQGLKTTTSPKEVIFSIAVGVAGLVLLALLIGNMQTYLTS 427 (732)
Q Consensus 372 ~Y~~slywal~tlstvGygd~~~~~~~E~if~i~i~i~G~~lfa~lIg~~~~~l~~ 427 (732)
....++|+++.++...| ++..|.....+++.++++++++++.+...+++.++|..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999998777 57789999999999999999999999999999999975
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=48.27 E-value=54 Score=28.12 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=48.5
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEE
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRA 599 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~A 599 (732)
+....+.+|..+-..-.+..++++|++|.+++.. +|+ ...+.+||.+- +.+. ....+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 101 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT-------IPGG-------VRHRART 101 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE-------ECTT-------CCEEEEC
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE-------ECCC-------CcEEeEE
Confidence 3455778888775555556899999999999865 333 35789999863 2222 2355666
Q ss_pred ccc-ceEEEe---CHHHHHHHH
Q 048288 600 LAE-VEAFAL---KAEELKFVA 617 (732)
Q Consensus 600 l~~-~ell~L---~~~df~~ll 617 (732)
.++ +.++.+ .++++...+
T Consensus 102 ~~~~~~~l~v~~p~~~d~~~~~ 123 (126)
T 4e2g_A 102 FEDGCLVLDIFSPPREDYARMA 123 (126)
T ss_dssp CTTCEEEEEEEESCCHHHHHHH
T ss_pred CCCCEEEEEEECCCCcchhhhh
Confidence 666 554433 345554443
No 91
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=45.24 E-value=60 Score=27.41 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=34.2
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|+.-.. .+.+++++|++|.+.+... +|+ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 44567788876554 4578999999999998653 244 35799999874
No 92
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=44.94 E-value=48 Score=32.34 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=48.6
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEE
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRA 599 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~A 599 (732)
+....+++|+.+-..-.+.+++++|++|.+++.. +|+ ...+.+||.+= +.+. ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAV-------LPAN-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE-------ECTT-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CcEEEEe
Confidence 4566889999887666667899999999998864 344 35789999864 2222 3466788
Q ss_pred -cccceEEEe
Q 048288 600 -LAEVEAFAL 608 (732)
Q Consensus 600 -l~~~ell~L 608 (732)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877643
No 93
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=43.88 E-value=52 Score=31.03 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=38.3
Q ss_pred CCCeEEEEEeeEEEEEEecCC---ceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHH
Q 048288 537 PVDEMLLIIRGRLESVTTDGG---RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAE 611 (732)
Q Consensus 537 ~~~~myfI~~G~v~v~~~~~G---~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~ 611 (732)
+.++++++++|.+.+...++| ++.- ...+++||+|= +... -..+-++-+++..+.+.+.
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~--dv~i~eGdmfl-------lP~g-------vpHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFI--DIIINEGDSYL-------LPGN-------VPHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEE--EEEECTTEEEE-------ECTT-------CCEEEEECTTCEEEEEEEC
T ss_pred CCceEEEEEeCEEEEEEEcCCCccccee--eEEECCCCEEE-------cCCC-------CCcCCcccCCcEEEEEEec
Confidence 456999999999999766655 1111 35799999984 3222 1234445577777777653
No 94
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=42.54 E-value=59 Score=29.49 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=39.2
Q ss_pred EecCCCCCeEEEEEeeEEEEEEecC--C--ceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEE
Q 048288 532 VREGDPVDEMLLIIRGRLESVTTDG--G--RTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFA 607 (732)
Q Consensus 532 ~~eGd~~~~myfI~~G~v~v~~~~~--G--~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~ 607 (732)
++.-+..|++|+|++|.+.+...++ + ... ...+++|+++= . ++- --.+-.|-++|.++.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~---~V~l~~Ge~yv-------V-PkG------veH~p~a~~e~~vLL 106 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIE---LTLMEKGKVYN-------V-PAE------CWFYSITQKDTKMMY 106 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEE---EEECCTTCCEE-------E-CTT------CEEEEEECTTCEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccc---eEEecCCCEEE-------e-CCC------ccCcccCCCceEEEE
Confidence 3444567899999999999955432 1 121 35789999873 2 221 234556677787776
Q ss_pred eCH
Q 048288 608 LKA 610 (732)
Q Consensus 608 L~~ 610 (732)
+..
T Consensus 107 iEp 109 (140)
T 3d0j_A 107 VQD 109 (140)
T ss_dssp EEE
T ss_pred EEe
Confidence 644
No 95
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=41.60 E-value=51 Score=30.30 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeC
Q 048288 537 PVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALK 609 (732)
Q Consensus 537 ~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~ 609 (732)
..+++++|++|.+++.. +|+ ...+++||.+= +... ...+..+.++|+++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~-------iP~G-------~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF-------IPKG-------SKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE-------ECCC-------CEEEEEeCCCEEEEEEE
Confidence 46789999999999874 555 35799999873 3222 23444445677666543
No 96
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=40.00 E-value=64 Score=32.79 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=41.8
Q ss_pred CCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeCHHH
Q 048288 535 GDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALKAEE 612 (732)
Q Consensus 535 Gd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~~~d 612 (732)
-+..++++++++|.+.+...++|+-. -..+++|++|= + +.. -..+=++-++|..+.|.+..
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfl-------l-P~g------v~HsP~r~~et~gLviE~~R 108 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFL-------L-PAR------VPHSPQRFANTVGLVVERRR 108 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEE-------E-CTT------CCEEEEECTTCEEEEEEECC
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEE-------e-CCC------CCcCCcccCCeEEEEEeecC
Confidence 34578999999999999666666422 35789999883 2 221 23455567788888887543
No 97
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.91 E-value=73 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=32.3
Q ss_pred EEeCCCCEEE---ecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 523 SLCTEGTCVV---REGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 523 ~~~~kge~I~---~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..+.||...- ....+.+++++|++|.+++...++|... ...+.+||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3566776543 1233457999999999998764422211 45799999874
No 98
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=39.05 E-value=33 Score=32.21 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.||......-..++++++|++|.+++... .+|.+ ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~----~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE----EEEECCCCEEE
Confidence 45567888887655433467999999999998543 33322 45799999874
No 99
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=38.50 E-value=46 Score=27.05 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=32.4
Q ss_pred eeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
....+.+|..+-..-.+ .+++++|++|.+.+.. +|+ ...+.+||++=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34567788776443334 3579999999998765 233 35789999863
No 100
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=38.07 E-value=40 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=33.3
Q ss_pred eeEEeCCCCEEEec--CCC-CCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCVVRE--GDP-VDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I~~e--Gd~-~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
....+.+|..+-.. -.. ..++++|++|.+++.. +|+ ...+.+||++-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 44567888876544 334 6799999999998765 333 35789998764
No 101
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=37.28 E-value=43 Score=28.78 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=33.3
Q ss_pred CeeEEeCCCCEEEecCCCC-CeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPV-DEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~-~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|..+-..-.+. .++++|++|.+++.. ++|+ ...+++||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCe-----EEEeCCCCEEE
Confidence 3445678888765444453 689999999998754 2444 35689999763
No 102
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.47 E-value=70 Score=25.97 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceEEEeC
Q 048288 538 VDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEAFALK 609 (732)
Q Consensus 538 ~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~ell~L~ 609 (732)
..++++|++|.+.+... |+ ...+.+||.+- +.+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999987543 33 35688998763 3322 23556666788887764
No 103
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=33.57 E-value=77 Score=30.20 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=35.4
Q ss_pred CeeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEEecCC---ceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVTTDGG---RTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~~~~G---~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|...-.--.+ .+++++|++|.+++...+++ .+.. ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 345677888765433333 57999999999998654332 2322 35799999874
No 104
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=31.69 E-value=34 Score=30.23 Aligned_cols=45 Identities=24% Similarity=0.162 Sum_probs=31.3
Q ss_pred EEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 523 SLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 523 ~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
-...+|..-.+..+ .+++++|++|.+.+.. ++|+ ...+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~-~~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVD-PDGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEEC-TTCC-----EEEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEE-CCCe-----EEEECCCCEEE
Confidence 35566666554332 3899999999999864 3454 34699999875
No 105
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=31.63 E-value=1.1e+02 Score=27.13 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=30.7
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+.+|..-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEE
Confidence 446677743222 246799999999999865 354 34799999875
No 106
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=31.53 E-value=1.5e+02 Score=24.28 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=41.3
Q ss_pred eEEeCCCCEEEecCCCC-CeE-EEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEE
Q 048288 522 PSLCTEGTCVVREGDPV-DEM-LLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRA 599 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~-~~m-yfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~A 599 (732)
...+.+|..+-..-.+. .++ ++|++|.+++... +|+ ...+.+||.+- +.+. ....+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~-~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD-GDA-----VIPAPRGAVLV-------APIS-------TPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG-GGC-----EEEECTTEEEE-------EETT-------SCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC-CCE-----EEEECCCCEEE-------eCCC-------CcEEEEE
Confidence 34567887765433333 466 8999999987643 133 35789999763 2222 2356677
Q ss_pred cccceEEEe
Q 048288 600 LAEVEAFAL 608 (732)
Q Consensus 600 l~~~ell~L 608 (732)
.++++++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777665543
No 107
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=30.97 E-value=64 Score=31.58 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=30.4
Q ss_pred EeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 524 LCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 524 ~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
.+.||...=.--.+.+++|+|++|.++.... +|+ ...+++||.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAP-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEET-TSC-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCC-----EEecCCCCEEE
Confidence 4455544433335678999999999987654 333 45789999763
No 108
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=30.28 E-value=58 Score=29.40 Aligned_cols=50 Identities=10% Similarity=0.145 Sum_probs=35.4
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+++|..+-.-..+..+.++|++|..+. .+|...- -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 45678899998877777778889999999973 2333210 13678888864
No 109
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=30.04 E-value=90 Score=34.71 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHhcCeeEEeCCCCEEEecC-CCCCeEEEEEeeEEEE-EEecCCceeEeeeeecCCCCeee
Q 048288 513 LDAICERLKPSLCTEGTCVVREG-DPVDEMLLIIRGRLES-VTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 513 l~~L~~~l~~~~~~kge~I~~eG-d~~~~myfI~~G~v~v-~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
+..+--.+....+.+|.++-.-= -.++++.+|++|.+++ +...+|+..+ ...+.+||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~--~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAIL--DQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEE--EEEecCCeEEE
Confidence 44444456777889998875432 3368999999999998 4444566544 57899999873
No 110
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=29.97 E-value=68 Score=30.64 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=46.4
Q ss_pred cCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEE
Q 048288 519 RLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVR 598 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~ 598 (732)
.+....+.+|..+-....+..++.+|++|.+. ++ ...+.+||++= ..+. +..+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~-------~p~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEI-------ADQE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEE-------ECSS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEE-------eCcC-------CccCCE
Confidence 44577889999998888889999999999975 22 23688999864 2222 344556
Q ss_pred E--cccceEEEe
Q 048288 599 A--LAEVEAFAL 608 (732)
Q Consensus 599 A--l~~~ell~L 608 (732)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 6 677877764
No 111
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=29.65 E-value=57 Score=30.20 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=32.3
Q ss_pred eeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
....+.+|..+-..-....++++|++|.+.+.. +|+ ...+.+||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 344566776554333457899999999998764 333 35789999874
No 112
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=29.22 E-value=93 Score=34.40 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHhcCeeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeee
Q 048288 513 LDAICERLKPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 513 l~~L~~~l~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fG 574 (732)
+..+--.+....+.||..+-.-=.+ ++++++|++|.+++.. ..+|+..+ ...+.+||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 3444445667788888866443333 6899999999999854 34455433 35799999874
No 113
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=28.72 E-value=51 Score=28.92 Aligned_cols=44 Identities=9% Similarity=0.183 Sum_probs=31.5
Q ss_pred EeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 524 LCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 524 ~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..++|..-... +..++++.|++|.+.+.. ++|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~-ddG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ-ADAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE-TTCC-----CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe-CCCe-----EEEECCCCEEE
Confidence 56677665544 334599999999998865 4465 35789999875
No 114
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=28.34 E-value=83 Score=34.93 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=40.6
Q ss_pred HHHHhcCeeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeee
Q 048288 514 DAICERLKPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 514 ~~L~~~l~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..+--.+....+.||..+-.-=.+ ++++++|++|.+++.. ..+|...+ ...+.+||++=
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~v 428 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVLV 428 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEEE
Confidence 344445667788899876443333 6899999999999844 44555443 45799999873
No 115
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=28.31 E-value=77 Score=34.86 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=38.3
Q ss_pred cCeeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEE-ecCCceeEeeeeecCCCCeee
Q 048288 519 RLKPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVT-TDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~-~~~G~e~~~~~~~l~~Gd~fG 574 (732)
.+....+.||..+-.-=.+ ++++++|++|.+++.. ..+|...+ ...+.+||++=
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 4566788898876443334 6899999999999854 44555444 45799999873
No 116
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=27.39 E-value=2.8e+02 Score=23.39 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=47.7
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEc-
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRAL- 600 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al- 600 (732)
...+.+|...-..-....++++|++|.+++.. +|+ ...+.+||++- +.+. ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~-------i~~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLII-------IPLD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEE-------ECCC-------CcEEeEeCC
Confidence 34556666443333356799999999998865 344 35789999874 3222 22345554
Q ss_pred -ccce--EEEeCHHHHHHHHHHcH
Q 048288 601 -AEVE--AFALKAEELKFVAGQFR 621 (732)
Q Consensus 601 -~~~e--ll~L~~~df~~ll~~~p 621 (732)
++++ ++.++.+-+..++.+.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45677777776665544
No 117
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=27.04 E-value=31 Score=28.51 Aligned_cols=49 Identities=14% Similarity=0.029 Sum_probs=31.2
Q ss_pred eeEEeCCCCEEEecCCCC-CeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCVVREGDPV-DEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~~-~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
....++||...-..-.+. +++++|++|.+++... +|.+ ...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEEE----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCCE----EEEEcCCCEEE
Confidence 345667776542222233 3599999999998653 3311 35799999874
No 118
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.76 E-value=44 Score=27.94 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred CCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcccceE
Q 048288 526 TEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALAEVEA 605 (732)
Q Consensus 526 ~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~~~el 605 (732)
.+|+...+.-+..+++++|++|.+++...+ |+ ...+.+||.+- +.+. ....+.+.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAV-------VPKS-------VSHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEE-------ECTT-------CCEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEE-------ECCC-------CcEeeEeCCCeEE
Confidence 345433233332389999999999886533 23 35799999873 3222 2244555567877
Q ss_pred EEeCHHH
Q 048288 606 FALKAEE 612 (732)
Q Consensus 606 l~L~~~d 612 (732)
+.+....
T Consensus 96 l~i~~~~ 102 (107)
T 2i45_A 96 VLIELSD 102 (107)
T ss_dssp EEEECC-
T ss_pred EEEECCC
Confidence 7775443
No 119
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=24.89 E-value=63 Score=27.37 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=29.0
Q ss_pred EEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeee-ecCCCCeee
Q 048288 523 SLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRG-LLKEGDFCG 574 (732)
Q Consensus 523 ~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~-~l~~Gd~fG 574 (732)
..+.+|..+-..-....++++|++|.+++.. +|+ .. .+.+||++-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQ-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTS-----CCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCE-----EEEEeCCCCEEE
Confidence 3455665542222345689999999998865 333 24 688999763
No 120
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=24.67 E-value=2.2e+02 Score=27.91 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=41.7
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeeehhhhhhhcCCCCCCCCCccccEEEEcc
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCGEELLTWALDPKSSTNLPLSTRTVRALA 601 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fGe~~l~~~l~~~p~~~~p~s~~tv~Al~ 601 (732)
...++||...-..- .+++.+|++|.+++.. +|+ ...+++||++- +... ....++..+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVY-------LPAG-------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEE-------ECTT-------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CCEEEEeCC
Confidence 45678887655442 7789999999998864 344 35799999874 3222 123444446
Q ss_pred cceEEEe
Q 048288 602 EVEAFAL 608 (732)
Q Consensus 602 ~~ell~L 608 (732)
+++++.+
T Consensus 111 ~~~~l~v 117 (246)
T 1sfn_A 111 DARVSVF 117 (246)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 7776665
No 121
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=24.41 E-value=54 Score=30.08 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=30.2
Q ss_pred EEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 523 SLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 523 ~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
..+.+|..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3455665543333456789999999999864 344 35788999763
No 122
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=24.32 E-value=1.1e+02 Score=31.82 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=35.2
Q ss_pred eeEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEEec-CCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCVVREGDP-VDEMLLIIRGRLESVTTD-GGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~~~-~G~e~~~~~~~l~~Gd~fG 574 (732)
....+.+|...-..-.+ .+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 35567788865433334 789999999999986544 44322 35799999764
No 123
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.32 E-value=1.1e+02 Score=27.51 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=31.7
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+.+|..+-..-....++++|++|.+.+... |++ ...+.+||++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 456677776643333457999999999988643 332 14688999874
No 124
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=24.15 E-value=1.3e+02 Score=32.81 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHhcCeeEEeCCCCEEEecC-CCCCeEEEEEeeEEEE-EEecCCceeEeeeeecCCCCeee
Q 048288 513 LDAICERLKPSLCTEGTCVVREG-DPVDEMLLIIRGRLES-VTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 513 l~~L~~~l~~~~~~kge~I~~eG-d~~~~myfI~~G~v~v-~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
+..+--.+....+.+|.+..--= -.++++++|++|.+++ ....+|+..+ -..+.+||+|=
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~--~~~l~~GDv~v 378 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVF--DGEVREGQVLM 378 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEE--eeEEeCCcEEE
Confidence 44444556677888888764332 3468999999999999 4444565544 36799999873
No 125
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=24.09 E-value=1e+02 Score=32.36 Aligned_cols=52 Identities=19% Similarity=0.097 Sum_probs=36.5
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEec-CCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTD-GGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~-~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|..+-..-.+..++++|++|.+++...+ +|+... ..+.+||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~---~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFI---DDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEE---EEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEE---EEeCCCCEEE
Confidence 345567888866433344789999999999996655 465432 3789999763
No 126
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=23.93 E-value=73 Score=27.57 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=30.6
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+.+|..+-.--....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEEE
Confidence 34556665553333446799999999998764 333 35688998763
No 127
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=23.79 E-value=66 Score=29.27 Aligned_cols=51 Identities=6% Similarity=0.025 Sum_probs=32.6
Q ss_pred eeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCc-----eeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGR-----TGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~-----e~~~~~~~l~~Gd~fG 574 (732)
....+.+|..+-..-....++++|++|.+.+...+++. .. ...+.+||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 34456777654222224568999999999987655221 11 35799999864
No 128
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=23.39 E-value=80 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=31.6
Q ss_pred eEEeCCCCEEEecCCC-CCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVREGDP-VDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~-~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+++|..+-.--.. ..++++|++|.+.+.. +|+ ...+.+||.+-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE-----EEEeCCCcEEE
Confidence 4567888765432233 4689999999998764 344 35789999863
No 129
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=23.31 E-value=61 Score=30.45 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=32.4
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFC 573 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~f 573 (732)
+....+.||...-.--....+..+|++|.+++... +|+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld-~ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD-DGA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG-GGC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC-CCe-----EEEECCCCEE
Confidence 44556777764433333455788999999998653 244 3579999998
No 130
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.23 E-value=1e+02 Score=30.18 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=34.9
Q ss_pred CeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCee
Q 048288 520 LKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFC 573 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~f 573 (732)
+....+.+|..+-.---+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445688888876655667899999999999865 344 3578999844
No 131
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=22.98 E-value=69 Score=34.57 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=38.2
Q ss_pred cCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 519 RLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
.+....+.||..+...-...+++++|++|..++...+.|... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355778899987766655677999999999998543333322 35799999874
No 132
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.82 E-value=55 Score=30.42 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=30.9
Q ss_pred eEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+.+|..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 33556666553333456789999999998754 344 35789999764
No 133
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=22.30 E-value=79 Score=34.34 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=38.7
Q ss_pred cCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 519 RLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
.+....+.||..+...-..++++++|++|...+...+++... ...+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 455778899988877655677999999999998554333322 45789999874
No 134
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=21.91 E-value=1.1e+02 Score=28.55 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=31.7
Q ss_pred eEEeCCCCEEEe--cCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 522 PSLCTEGTCVVR--EGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 522 ~~~~~kge~I~~--eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+.+|...-. -.....++++|++|.+++.. +|+ ...+.+||.+-
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 346677776542 22334699999999998765 344 35799999873
No 135
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=21.63 E-value=1.4e+02 Score=31.02 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=36.1
Q ss_pred CeeEEeCCCCEEEecCCCC-CeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 520 LKPSLCTEGTCVVREGDPV-DEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 520 l~~~~~~kge~I~~eGd~~-~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
+....+.+|..+-..-.+. +++++|++|.+++... .+|+.. ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 4456778888765433344 8999999999998643 345421 35799999874
No 136
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.07 E-value=67 Score=29.51 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=31.2
Q ss_pred eeEEeCCCCEE--EecCCCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 521 KPSLCTEGTCV--VREGDPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 521 ~~~~~~kge~I--~~eGd~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
....+.+|... .+.-+..+++++|++|.+++... |+ ...+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34566777744 22223346999999999998653 33 35789998764
No 137
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=21.07 E-value=86 Score=34.15 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=37.8
Q ss_pred cCeeEEeCCCCEEEecCCCCCeEEEEEeeEEEEEEe-cCCceeEeeeeecCCCCeee
Q 048288 519 RLKPSLCTEGTCVVREGDPVDEMLLIIRGRLESVTT-DGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 519 ~l~~~~~~kge~I~~eGd~~~~myfI~~G~v~v~~~-~~G~e~~~~~~~l~~Gd~fG 574 (732)
.+....+.||..+...-..++++++|++|.+++... .++.+ ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE----EEEecCCCEEE
Confidence 345668899988766655577999999999998543 33332 46799999874
No 138
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=20.95 E-value=78 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=24.3
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeEeeeeecCCCCeee
Q 048288 536 DPVDEMLLIIRGRLESVTTDGGRTGFYNRGLLKEGDFCG 574 (732)
Q Consensus 536 d~~~~myfI~~G~v~v~~~~~G~e~~~~~~~l~~Gd~fG 574 (732)
...+++++|++|.+++...+ ++. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~--~~~---~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEG--DTA---PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETT--CSS---CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECC--EEE---EEEECCCCEEE
Confidence 35679999999999986533 210 14699999874
Done!