BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048289
(920 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 202/685 (29%), Positives = 291/685 (42%), Gaps = 111/685 (16%)
Query: 226 SSPLRFMDLYGCNFMGSIPA--SLGNLSQLTYLDLSYN--NFSGHIPSTLSNLQQLRHLD 281
S+ L +DL + G + SLG+ S L +L++S N +F G + L L L LD
Sbjct: 96 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLD 154
Query: 282 LSNNKFTGQ--IPCIFAN-LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
LS N +G + + ++ +L L S N+++G + VSR +L + +S N+ +
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 212
Query: 339 IPSGLFTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNX 398
IP L L+ +D+ N+L+G S +IS EL + N
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCT----------------ELKLLNISSNQ 255
Query: 399 XXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQ-HRLQILDLSDNQI 456
P+ S L LSL+ + E PDFL L LDLS N
Sbjct: 256 FVGPIPPL--------PLKS----LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 457 RGGIP-----------------NWIWNVGKDTL------NHLNLSHNFLTGIELLPWKNL 493
G +P N+ + DTL L+LS N +G NL
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 494 RY----LDLRSNSLKGSIPFLPP-------SLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
LDL SN+ G P LP +L + + NN +G+IP + N S + ++
Sbjct: 364 SASLLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 543 LSNNSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601
LS N L+G IP L + S L L + +N G IPQ L L L+ N L G +P
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661
L NC+ L + + NNR+ G P W+G L L +L L +N F G I + L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIW 539
Query: 662 LDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYIN---YGNEYYSA--ILTVKGVN 716
LDL+ N F G +P F+ Q+ N A +YI E + A +L +G+
Sbjct: 540 LDLNTNLFNGTIPAAMFK--QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 717 MEMEKVL------NIFTTI------------------DLSGNKFQGRIPEVVGKLNSLKG 752
E L NI + + D+S N G IP+ +G + L
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 753 LNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPI 812
LN HN ++G IP + +L L LDLSSNK+ G IP ++ GPI
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 813 PQGKQFHTFSSDSYNGNMGLCGFPL 837
P+ QF TF + N GLCG+PL
Sbjct: 718 PEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 201/769 (26%), Positives = 306/769 (39%), Gaps = 154/769 (20%)
Query: 4 QFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTC--DMMT---------- 51
+ QL SF+ P + + W K+ C++DGVTC D +T
Sbjct: 10 EIHQLISFKDVLPD---------KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLN 60
Query: 52 ---------------------------GHVTG---------LDLSCSRLHGSIPSDSSLF 75
G V+G LDLS + L G + + +SL
Sbjct: 61 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 120
Query: 76 SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSG---------QIPAEISHL 126
S L+ LN++ N ++ G + +L L+LS +S SG E+ HL
Sbjct: 121 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 180
Query: 127 S----------------KLVSLDLSGNSQLGLDTPVLKAXXXXXXXXXXXXXXSVDMSYE 170
+ L LD+S N P L S D S
Sbjct: 181 AISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 239
Query: 171 VPXXXXXXXXXXXXXXGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV--NWSSP 228
+ G IP L +LQ L L+ NK T P
Sbjct: 240 ISTCTELKLLNISSNQ----FVGPIPP--LPLKSLQYLSLAENK-FTGEIPDFLSGACDT 292
Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP-STLSNLQQLRHLDLSNNKF 287
L +DL G +F G++P G+ S L L LS NNFSG +P TL ++ L+ LDLS N+F
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 288 TGQIPCIFANLTQ-LSFLDFSNNQLNGPISSSVSR--LHSLVTIYLSYNSLNGTIPSGLF 344
+G++P NL+ L LD S+N +GPI ++ + ++L +YL N G IP L
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 345 TSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXX 404
L S+ L N L+G+I +S+ L ++L++
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSL----------------------SKLRDLKLWLNM 450
Query: 405 XXXXXXXXXXPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNW 463
V + L L L +++ E P L L + LS+N++ G IP W
Sbjct: 451 LEGEIPQELMYVKT----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 464 IWNVGKDTLNHLNLSHNFLTG---IELLPWKNLRYLDLRSNSLKGSIPFL------PPSL 514
I + + L L LS+N +G EL ++L +LDL +N G+IP +
Sbjct: 507 IGRL--ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 515 NFIS------VSNNKLSGEIP-----LSFCN--------MSSIFYVNLSNNSLNGMIPPC 555
NFI+ + N+ + E L F +S+ N+++ G P
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 556 LANS-SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
N+ S+ FLDM N G IP+ L ILNL N + GS+P + + L +LD+
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 615 GNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD 663
+N+++G P + AL+ L + L +N GPI FP + L+
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 163 bits (413), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 197/664 (29%), Positives = 282/664 (42%), Gaps = 109/664 (16%)
Query: 245 ASLGNLSQLTYLDLSYN--NFSGHIPSTLSNLQQLRHLDLSNNKFTGQ--IPCIFAN-LT 299
SLG+ S L +L++S N +F G + L L L LDLS N +G + + ++
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
+L L S N+++G + VSR +L + +S N+ + IP L L+ +D+ N+L
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 360 TGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXXXXXXXPVNSS 419
+G S +IS EL + N P+ S
Sbjct: 236 SGDFSRAISTCT----------------ELKLLNISSNQFVGPIPPL--------PLKS- 270
Query: 420 FPYLSMLSLSSCNIS-EFPDFLRTQ-HRLQILDLSDNQIRGGIP---------------- 461
L LSL+ + E PDFL L LDLS N G +P
Sbjct: 271 ---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 462 -NWIWNVGKDTL------NHLNLSHNFLTGIELLPWKNLRY----LDLRSNSLKGSIPFL 510
N+ + DTL L+LS N +G NL LDL SN+ G P L
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PIL 385
Query: 511 PP-------SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLW 562
P +L + + NN +G+IP + N S + ++LS N L+G IP L + S L
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
L + +N G IPQ L L L+ N L G +P L NC+ L + + NNR+ G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQ 682
P W+G L L +L L +N F G I + L LDL+ N F G +P F+ Q
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFK--Q 561
Query: 683 AMMHGNNNSAEGGNMYIN---YGNEYYSA--ILTVKGVNMEMEKVL------NIFTTI-- 729
+ N A +YI E + A +L +G+ E L NI + +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 730 ----------------DLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQ 773
D+S N G IP+ +G + L LN HN ++G IP + +L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 774 LESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSDSYNGNMGLC 833
L LDLSSNK+ G IP ++ GPIP+ QF TF + N GLC
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741
Query: 834 GFPL 837
G+PL
Sbjct: 742 GYPL 745
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 201/769 (26%), Positives = 306/769 (39%), Gaps = 154/769 (20%)
Query: 4 QFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTC--DMMT---------- 51
+ QL SF+ P + + W K+ C++DGVTC D +T
Sbjct: 13 EIHQLISFKDVLPD---------KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLN 63
Query: 52 ---------------------------GHVTG---------LDLSCSRLHGSIPSDSSLF 75
G V+G LDLS + L G + + +SL
Sbjct: 64 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123
Query: 76 SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSG---------QIPAEISHL 126
S L+ LN++ N ++ G + +L L+LS +S SG E+ HL
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183
Query: 127 S----------------KLVSLDLSGNSQLGLDTPVLKAXXXXXXXXXXXXXXSVDMSYE 170
+ L LD+S N P L S D S
Sbjct: 184 AISGNKISGDVDVSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 171 VPXXXXXXXXXXXXXXGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV--NWSSP 228
+ G IP L +LQ L L+ NK T P
Sbjct: 243 ISTCTELKLLNISSNQ----FVGPIPP--LPLKSLQYLSLAENK-FTGEIPDFLSGACDT 295
Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP-STLSNLQQLRHLDLSNNKF 287
L +DL G +F G++P G+ S L L LS NNFSG +P TL ++ L+ LDLS N+F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 288 TGQIPCIFANLTQ-LSFLDFSNNQLNGPISSSVSR--LHSLVTIYLSYNSLNGTIPSGLF 344
+G++P NL+ L LD S+N +GPI ++ + ++L +YL N G IP L
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 345 TSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXX 404
L S+ L N L+G+I +S+ L ++L++
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSL----------------------SKLRDLKLWLNM 453
Query: 405 XXXXXXXXXXPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRLQILDLSDNQIRGGIPNW 463
V + L L L +++ E P L L + LS+N++ G IP W
Sbjct: 454 LEGEIPQELMYVKT----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 464 IWNVGKDTLNHLNLSHNFLTG---IELLPWKNLRYLDLRSNSLKGSIPFL------PPSL 514
I + + L L LS+N +G EL ++L +LDL +N G+IP +
Sbjct: 510 IGRL--ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 515 NFIS------VSNNKLSGEIP-----LSFCN--------MSSIFYVNLSNNSLNGMIPPC 555
NFI+ + N+ + E L F +S+ N+++ G P
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 556 LANS-SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDV 614
N+ S+ FLDM N G IP+ L ILNL N + GS+P + + L +LD+
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 615 GNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILD 663
+N+++G P + AL+ L + L +N GPI FP + L+
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 110/432 (25%), Positives = 168/432 (38%), Gaps = 126/432 (29%)
Query: 441 RTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLT-------GIELLPWKNL 493
+ L LDLS N + G + L LN+S N L G++L +L
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL---NSL 153
Query: 494 RYLDLRSNSLKGS------IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547
LDL +NS+ G+ + L +++S NK+SG++ +S C VNL
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC-------VNLE--- 203
Query: 548 LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCS 607
FLD+ NNF IP L +CS
Sbjct: 204 ---------------FLDVSSNNFSTGIP-------------------------FLGDCS 223
Query: 608 FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNN 667
L+ LD+ N+++G F + +EL++L + SN+F GPI P L+ L L+ N
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PPLPLKSLQYLSLAEN 279
Query: 668 EFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGV------------ 715
+FTG +P + G ++ G ++ GN +Y A+ G
Sbjct: 280 KFTGEIPD--------FLSGACDTLTGLDL---SGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 716 ----NMEMEKVLNI--FTTIDLSGNKFQGRIPEVVGKL---------------------- 747
+ M+ +L + +DLS N+F G +PE + L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 748 -----NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXX 802
N+L+ L +N TG IP +L N ++L SL LS N ++G IP L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 803 XXXXXXXGPIPQ 814
G IPQ
Sbjct: 449 LWLNMLEGEIPQ 460
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 418 SSFPYLSMLSLSSCN--ISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHL 475
++ PYL+ L + N + P + +L L ++ + G IP+++ + TL L
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTL 130
Query: 476 NLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNM 535
+ S+N L+G +L SI LP +L I+ N++SG IP S+ +
Sbjct: 131 DFSYNALSG-----------------TLPPSISSLP-NLVGITFDGNRISGAIPDSYGSF 172
Query: 536 SSIFY-VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQ 594
S +F + +S N L G IPP AN +L F+D+ N G F ++L N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 595 LE---GSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPI 647
L G V LS L LD+ NNRI GT P L L L L + N G I
Sbjct: 233 LAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 195 IPENIFRLPNLQNLILSYNKNLTS-VFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL 253
IP ++ LP L L + NL + P + + L ++ + N G+IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 254 TYLDLSYNNFSGHIPSTLSNLQQL-------------------------RHLDLSNNKFT 288
LD SYN SG +P ++S+L L + +S N+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
G+IP FANL L+F+D S N L G S + I+L+ NSL + + S
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 349 LESIDLRNNQLTGSISNSISEL 370
L +DLRNN++ G++ +++L
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQL 267
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 131/343 (38%), Gaps = 105/343 (30%)
Query: 28 SKMISWKEEKDCC--SWDGVTCDM--MTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQIL 83
+ + SW DCC +W GV CD T V LDLS L P SSL +LP+L
Sbjct: 22 TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL--- 78
Query: 84 NLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLD 143
N+ YI +++ G IP I+ L++L L ++ + G
Sbjct: 79 -------NFLYIG--------------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 144 TPVLKAXXXXXXXXXXXXXXSVDMSYEVPXXXXXXXXXXXXXXGNCGLQGSIPENIFRLP 203
L ++D SY L G++P +I LP
Sbjct: 118 PDFLSQIKTLV---------TLDFSYNA-------------------LSGTLPPSISSLP 149
Query: 204 NLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQL-TYLDLSYNN 262
NL + N+ G+IP S G+ S+L T + +S N
Sbjct: 150 NLVGITFDGNR------------------------ISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN----------LTQLSF--------- 303
+G IP T +NL L +DLS N G +F + L+F
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 304 ----LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSG 342
LD NN++ G + +++L L ++ +S+N+L G IP G
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 123/313 (39%), Gaps = 74/313 (23%)
Query: 528 IPLSFCNMSSIFYVNLSN-NSLNGMIPPCLAN-SSLWFLDMRMNNFHGSIPQTFSKGSRL 585
IP S N+ + ++ + N+L G IPP +A + L +L + N G+IP S+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL-QVLILRSNRFH 644
L+ + N L G++P S+ + L + NRI+G P G+ S+L + + NR
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNE 704
G I + L +DLS N G +++ G++ + +
Sbjct: 188 GKIPPTFANL---NLAFVDLSRNMLEGD---------ASVLFGSDKNTQ----------- 224
Query: 705 YYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLI 764
I L+ N + + VG +L GL+ +N++ G +
Sbjct: 225 -----------------------KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260
Query: 765 PYSLENLTQLESLDLSSNKVAGEIPWQLTXXXXXXXXXXXXXXXXGPIPQGKQFHTFSSD 824
P L L L SL++S N + GE IPQG F
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGE------------------------IPQGGNLQRFDVS 296
Query: 825 SYNGNMGLCGFPL 837
+Y N LCG PL
Sbjct: 297 AYANNKCLCGSPL 309
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 113/272 (41%), Gaps = 63/272 (23%)
Query: 291 IPCIFANLTQLSFLDFSN-NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
IP ANL L+FL N L GPI ++++L L +Y+++ +++G IP L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 350 ESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXXXXXXXX 409
++D N L+G++ SI
Sbjct: 128 VTLDFSYNALSGTLPPSI------------------------------------------ 145
Query: 410 XXXXXPVNSSFPYLSMLSLSSCNIS-EFPDFLRTQHRL-QILDLSDNQIRGGIPNWIWNV 467
SS P L ++ IS PD + +L + +S N++ G IP N+
Sbjct: 146 --------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Query: 468 GKDTLNHLNLSHNFLTGIELLPW---KNLRYLDLRSNSLK---GSIPFLPPSLNFISVSN 521
L ++LS N L G + + KN + + L NSL G + L +LN + + N
Sbjct: 198 ---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRN 253
Query: 522 NKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIP 553
N++ G +P + + +N+S N+L G IP
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 192 QGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY-GCNFMGSIPASL-GN 249
S+P I P ++ ++ +T + P V + S + +LY G N +G++P + +
Sbjct: 31 HASVPAGI---PTNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDS 86
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309
L+QLT LDL N + + L L+ L + NK T ++P LT L+ L N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 310 QLNGPISSSVSRLHSLVTIYLSYN 333
QL + RL SL YL N
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC-IFANLT 299
S+PA + +Q+ YL N + P +L L+ L L +N+ G +P +F +LT
Sbjct: 32 ASVPAGIPTNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
QL+ LD NQL S+ RL L +++ N L +P G+ L + L NQL
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
L T +DL N+ V +L LK L NKLT L P +E LT L L L N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN 145
Query: 783 KV 784
++
Sbjct: 146 QL 147
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 174/417 (41%), Gaps = 87/417 (20%)
Query: 423 LSMLSLSSCNISEF-PDFLRTQHRLQILDLSDNQIRGGIPNWI-WNVGKDTLNHLNLSHN 480
L L LSS + EF P +T +L L L++ Q+ + + W + ++ +L+L++N
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 481 FLTGIEL-----LPWKNLRYLDLRSNSLK----GSIPFLPPSLNFISVSNNKLSGEIPLS 531
L L W NL LDL N+L GS +LP SL ++S+ N + P S
Sbjct: 233 QLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRLSPRS 291
Query: 532 FCNMSSIFYVNL----SNNSLNGMIPPCLANSS------LWFLDMRMNNFHGSIPQTFSK 581
F +S++ Y++L + S++ P + + S L +L+M NN + TF+
Sbjct: 292 FYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG 351
Query: 582 GSRLTILNLND-----NQLEGSVPLSLVNCSFLEVLDVGNNRI----NGTFPAWLGALSE 632
L L+L+ L +SL + L L++ N I NGTF +WLG
Sbjct: 352 LVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL-TLNLTKNHISKIANGTF-SWLG---- 405
Query: 633 LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSA 692
+LRILDL NE L + ++ + +
Sbjct: 406 -------------------------QLRILDLGLNEIEQKLSGQEWRGLRNIFE----IY 436
Query: 693 EGGNMYINYGNEYYSAILTVKGVNMEMEKVLNI------------FTTIDLSGNKFQGRI 740
N Y+ ++ + +++ + + + N+ T +DLS N
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANIN 496
Query: 741 PEVVGKLNSLKGLNFSHNKLTGLIPYS--------LENLTQLESLDLSSNKVAGEIP 789
+++ L +L+ L+F HN L L + L+ L+ L L+L SN + EIP
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIP 552
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNR 642
S +T+LNL NQL P + S L +LD G N I+ P L L+VL L+ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 643 F 643
Sbjct: 85 L 85
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 205 LQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYN 261
+QNL L+ N+ L S F + W++ L +DL N S L L YL L YN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTN-LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 262 NFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI----------FANLTQLSFLDFSNNQL 311
N P + L LR+L L FT Q + F L L +L+ +N +
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSLK-RAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 312 NGPISSSVSRLHSLVTIYLS 331
S++ + L SL + LS
Sbjct: 342 PSTKSNTFTGLVSLKYLSLS 361
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
+DL A+ L++LT+L+L YN +L +L L L+NN+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LE 350
+F +LTQL L NQL S RL L + L+ N L +IP+G F L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 351 SIDLRNNQL 359
++ L NQL
Sbjct: 159 TLSLSTNQL 167
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 722 VLNIFTTID---LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
V + T +D L GN+ + V +L LK L + N+L + + + LT L++L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 779 LSSNKV 784
LS+N++
Sbjct: 162 LSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 232 MDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQI 291
+DL A+ L++LT+L+L YN +L +L L L+NN+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 292 PCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LE 350
+F +LTQL L NQL S RL L + L+ N L +IP+G F L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQ 158
Query: 351 SIDLRNNQL 359
++ L NQL
Sbjct: 159 TLSLSTNQL 167
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 722 VLNIFTTID---LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
V + T +D L GN+ + V +L LK L + N+L + + + LT L++L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 779 LSSNKV 784
LS+N++
Sbjct: 162 LSTNQL 167
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 209 ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIP 268
I++ N ++ SV + + +R++ L G N + I A L L+ LTYL L+ N
Sbjct: 46 IIANNSDIKSV-QGIQYLPNVRYLAL-GGNKLHDISA-LKELTNLTYLILTGNQLQSLPN 102
Query: 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTI 328
L L+ L L N+ +F LT L++L+ ++NQL +L +L +
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 329 YLSYNSLNGTIPSGLFTS-PLLESIDLRNNQL 359
LSYN L ++P G+F L+ + L NQL
Sbjct: 163 DLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 201 RLPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYL 256
L NL LIL+ N+ + VF K+ L ++ N + S+P + L+ LTYL
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYL 138
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPIS 316
+L++N L L LDLS N+ +F LTQL L NQL
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 317 SSVSRLHSLVTIYLSYNSLNGTIP 340
RL SL I+L N + T P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 638 LRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN----SAE 693
+++N +T +VT+ + + +N++ V +Y N + + G N SA
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81
Query: 694 GGNMYINY----GNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNS 749
+ Y GN+ S N +K+ N+ + L N+ Q V KL +
Sbjct: 82 KELTNLTYLILTGNQLQSL------PNGVFDKLTNLKELV-LVENQLQSLPDGVFDKLTN 134
Query: 750 LKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
L LN +HN+L L + LT L LDLS N++
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
T ++L+ N+ Q V KL +L L+ S+N+L L + LTQL+ L L N++
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772
KGV +K+ N+ T +DLS N+ Q V KL LK L N+L + + LT
Sbjct: 150 KGV---FDKLTNL-TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205
Query: 773 QLESLDLSSNKVAGEIPWQLT 793
L+ + L N PW T
Sbjct: 206 SLQYIWLHDN------PWDCT 220
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSL 503
R+Q LDL N+I + DTL HLNL +NF+ ++ + + L+ LDL SN L
Sbjct: 145 RVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203
Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
F+ P F + + + +++L NN L + + +L
Sbjct: 204 ----AFMGP------------------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 564 LDMRMNNFH-GSIPQTFSKGSRL------TILNLN-DNQLEGSVP 600
D+R N FH G++ FSK R+ T+ L N+ E +VP
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSF-LEVLDVGNNRINGTFPAWLGALSE 632
+I + G+R I + D+ L+ ++ SL ++ ++ LD+ N ++ A L ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 633 LQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN-- 690
L++L L SN + + LR LDL+NN +L + A NNN
Sbjct: 60 LELLNLSSNVLYETLDLE----SLSTLRTLDLNNNYVQELLVGPSIETLHA---ANNNIS 112
Query: 691 ----SAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG-RIPEVVG 745
S G I N + I ++ ++ E + +DL N+ E+
Sbjct: 113 RVSCSRGQGKKNIYLAN---NKITMLRDLD---EGCRSRVQYLDLKLNEIDTVNFAELAA 166
Query: 746 KLNSLKGLNFSHN---KLTGLIPYSLENLTQLESLDLSSNKVA 785
++L+ LN +N + G + ++ +L++LDLSSNK+A
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQVVFA-----KLKTLDLSSNKLA 204
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NNQL + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339
LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N L T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 340 PSGLFT-SPLLESIDLRNNQLT 360
P GL T +P LE + L NNQLT
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT 161
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN+ T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNQLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NNQL + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339
LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N L T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 340 PSGLFT-SPLLESIDLRNNQLT 360
P GL T +P LE + L NNQLT
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT 161
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN+ T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNQLT 161
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 32/165 (19%)
Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE-LLPWKNLRYLDLRSNSL 503
R+Q LDL N+I + DTL HLNL +NF+ ++ + + L+ LDL SN L
Sbjct: 145 RVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203
Query: 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWF 563
F+ P F + + + +++L NN L + + +L
Sbjct: 204 ----AFMGP------------------EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241
Query: 564 LDMRMNNFH-GSIPQTFSKGSRL------TILNLN-DNQLEGSVP 600
D+R N FH G++ FSK R+ T+ L N+ E +VP
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 28/222 (12%)
Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
+I + G+R I + D+ L+ ++ + ++ LD+ N ++ A L ++L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 634 QVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNN--- 690
++L L SN + + LR LDL+NN +L + A NNN
Sbjct: 61 ELLNLSSNVLYETLDLE----SLSTLRTLDLNNNYVQELLVGPSIETLHA---ANNNISR 113
Query: 691 ---SAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG-RIPEVVGK 746
S G I N + I ++ ++ E + +DL N+ E+
Sbjct: 114 VSCSRGQGKKNIYLAN---NKITMLRDLD---EGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Query: 747 LNSLKGLNFSHN---KLTGLIPYSLENLTQLESLDLSSNKVA 785
++L+ LN +N + G + ++ +L++LDLSSNK+A
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFA-----KLKTLDLSSNKLA 204
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 236 GCNFMGSIPASLGN-LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI 294
G N + S+P + N L+ LTYL+LS N L QL+ L L+ N+ +
Sbjct: 60 GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV 119
Query: 295 FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
F LTQL L NQL RL SL I+L N + T P
Sbjct: 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
L T + L GNK Q V KL SL LN S N+L L + LTQL+ L L++N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 783 KV 784
++
Sbjct: 111 QL 112
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
L T ++LS N+ Q V KL LK L + N+L L + LTQL+ L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 783 KV 784
++
Sbjct: 135 QL 136
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 495 YLDLRSNSLKGSIPFLP-------PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNS 547
YLDL +NSLK LP SL + + NKL F ++S+ Y+NLS N
Sbjct: 32 YLDLETNSLKS----LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 548 LNGMIPPCLANSSLWFLDMRMN-NFHGSIPQ-TFSKGSRLTILNLNDNQLEGSVP 600
L + P + + ++ +N N S+P F K ++L L L NQL+ SVP
Sbjct: 88 LQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVP 140
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN 357
+L L +NNQL + ++ L +L T+ L NSL TIP G F S LL L N
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339
LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N L T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 340 PSGLFT-SPLLESIDLRNNQLT 360
P GL T +P LE + L NNQLT
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT 161
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN+ T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN 357
+L L +NNQL + ++ L +L T+ L NSL TIP G F S LL L N
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339
LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N L T+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL 139
Query: 340 PSGLFT-SPLLESIDLRNNQLT 360
P GL T +P LE + L NNQLT
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT 161
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN+ T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNQLT 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 47 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 148 SNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 330 LSYNSLNGT---IPSGLFTSPLLESIDLRNNQL 359
LS + I G F L+ + L NQL
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 214
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 46 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 147 SNLTNLEHLDLSSNKI 162
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 330 LSYNSLNGT---IPSGLFTSPLLESIDLRNNQL 359
LS + I G F L+ + L NQL
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 213
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 46 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 147 SNLTNLEHLDLSSNKI 162
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 330 LSYNSLNGT---IPSGLFTSPLLESIDLRNNQL 359
LS + I G F L+ + L NQL
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 213
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 194 SIPENIFR-LPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASL-G 248
++P IF+ L NL+ L ++ NK VF ++ + LR N + S+P +
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR----NQLKSLPPRVFD 130
Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
+L++LTYL L YN L L+ L L NN+ F LT+L L N
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
NQL + L L + L N + T
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 204 NLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPA-SLGNLSQLTYLDLSYNN 262
N +N + +K LT++ N + + +DL N + S+P+ + L++L L L+ N
Sbjct: 16 NNKNSVDCSSKKLTAI--PSNIPADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNK 72
Query: 263 FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRL 322
L+ L L +++NK +F L L+ L NQL L
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 323 HSLVTIYLSYNSLNGTIPSGLFTS-PLLESIDLRNNQL 359
L + L YN L ++P G+F L+ + L NNQL
Sbjct: 133 TKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL 169
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLP----PSLNFISVSNNKLSGEI 528
N ++ S LT I + + LDL+SN L S+P L + +++NKL
Sbjct: 19 NSVDCSSKKLTAIPSNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRM--NNFHGSIPQTFSKGSRLT 586
F + ++ + +++N L + P + + + ++R+ N P+ F ++LT
Sbjct: 78 AGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 587 ILNLNDNQLEGSVPLSLVN-CSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
L+L N+L+ S+P + + + L+ L + NN++ L+EL+ L L +N+
Sbjct: 137 YLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ--- 192
Query: 646 PITYSVTRFP------FPKLRILDLSNN 667
+ R P KL++L L N
Sbjct: 193 -----LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
L T + L N+ Q V KL SLK L +N+L + + + LT+L++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 783 KV 784
++
Sbjct: 192 QL 193
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 45 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 146 SNLTNLEHLDLSSNKI 161
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 330 LSYNSLNGT---IPSGLFTSPLLESIDLRNNQL 359
LS + I G F L+ + L NQL
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHI-PSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
+ S+P + +Q+ YL Y+N + P L QL LDL NN+ T +F L
Sbjct: 21 LASVPTGIPTTTQVLYL---YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
TQL+ L ++NQL + L SL I+L
Sbjct: 78 TQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWL 109
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
T +D S + + +P+ + Q+ L L +N+ T P +F LTQL+ LD NNQL
Sbjct: 12 TTVDCSGKSLAS-VPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
+ +L L + L+ N L +IP G F
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 98
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
L N+ P V +L L L+ +N+LT L + LTQL L L+ N++
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNN-FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
+ S+P + +Q+ YL Y+N + P L QL LDL NN+ T +F L
Sbjct: 29 LASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
TQL+ L ++NQL + L SL I+L
Sbjct: 86 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 117
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
T +D S + + +P+ + Q+ L L +N+ T P +F LTQL+ LD NNQL
Sbjct: 20 TTVDCSGKSLAS-VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
+ +L L + L+ N L +IP G F
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 106
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
TT+D SG +P G + + L N++T L P + LTQL LDL +N++
Sbjct: 20 TTVDCSGKSL-ASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ LNFS N++T L P L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLD 179
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 180 ISSNKVS 186
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 198 NIFRLPNLQNL--ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
+I L NL NL + +N +T + P N ++ R N + I A L L+ L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--LSSNTISDISA-LSGLTSLQQ 155
Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
L+ S N + P L+NL L LD+S+NK + + A LT L L +NNQ++
Sbjct: 156 LNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI- 210
Query: 316 SSSVSRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLESIDLRNNQLT 360
+ + L +L + L+ N L GT+ S T+ L +DL NNQ++
Sbjct: 211 -TPLGILTNLDELSLNGNQLKDIGTLAS--LTN--LTDLDLANNQIS 252
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
L+ L LSS IS+ L LQ L+ S NQ+ P + N+ TL L++S N +
Sbjct: 131 LNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLT--TLERLDISSNKV 185
Query: 483 TGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
+ I +L NL L +N + P + +L+ +S++ N+L +I + +++++
Sbjct: 186 SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIG-TLASLTNLTD 243
Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
++L+NN ++ + P + L L + N P + + LT L LN+NQLE P
Sbjct: 244 LDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 301 IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L NNK + ANLT +++L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 356
Query: 307 SNNQL 311
+NQ+
Sbjct: 357 GHNQI 361
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
L NL++L + ++ N + P L+NL L L L NN+ T P NLT L+ L+
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
S+N ++ S++S L SL + S N + P T+ LE +D+ +N+++
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTT--LERLDISSNKVS 186
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNN-FSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANL 298
+ S+P + +Q+ YL Y+N + P L QL LDL NN+ T +F L
Sbjct: 21 LASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 299 TQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
TQL+ L ++NQL + L SL I+L
Sbjct: 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 254 TYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG 313
T +D S + + +P+ + Q+ L L +N+ T P +F LTQL+ LD NNQL
Sbjct: 12 TTVDCSGKSLAS-VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
+ +L L + L+ N L +IP G F
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 98
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
TT+D SG +P G + + L N++T L P + LTQL LDL +N++
Sbjct: 12 TTVDCSGKSL-ASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 47 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 148 SNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 330 LSYNSLNGT---IPSGLFTSPLLESIDLRNNQL 359
LS + I G F L+ + L NQL
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 214
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 69 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 169
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 170 SNLTNLEHLDLSSNKI 185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Query: 188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY--GCNFMGSIPA 245
NC G P +L +L+ L + NK + F +V+ S L F+DL G +F G
Sbjct: 337 NCKF-GQFP--TLKLKSLKRLTFTSNKG-GNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQ 391
Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL--SNNKFTGQIPCIFANLTQLSF 303
S L YLDLS+N + S L+QL HLD SN K + +F +L L +
Sbjct: 392 SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIY 449
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS----PLLESIDLRNNQL 359
LD S+ + + L SL + ++ NS +FT L+ + QL
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 360 TGSISNSISEL 370
+ + NS+S L
Sbjct: 510 SPTAFNSLSSL 520
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 59 LSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ 118
L S H + + L L++L +A N F +++ FT NL L+LS
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 119 IPAEISHLSKLVSLDLSGNSQLGLDT 144
P + LS L L++S N+ LDT
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNFFSLDT 535
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 20/259 (7%)
Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN--SL 335
+HL+L N KF GQ P + L L L F++N+ G + S L SL + LS N S
Sbjct: 331 QHLELVNCKF-GQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSF 385
Query: 336 NGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAEL 395
G F + L+ +DL N + SN + L E +F L
Sbjct: 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSL 444
Query: 396 KNXXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNISE--FPDFLRTQHRLQILDLSD 453
+N N L +L ++ + E PD L LDLS
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 454 NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL-------KGS 506
Q+ P ++ +L LN+SHN ++ P+K L L + SL K
Sbjct: 504 CQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561
Query: 507 IPFLPPSLNFISVSNNKLS 525
+ P SL F++++ N +
Sbjct: 562 LQHFPSSLAFLNLTQNDFA 580
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLDFSN 308
L L YLD+S+ + + L L L ++ N F +P IF L L+FLD S
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYN 333
QL ++ + L SL + +S+N
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
T +DLS + + P L+SL+ LN SHN L + + L L+ LD S N +
Sbjct: 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGS-IPASLGNLSQLTYLDLSY 260
L NL L +S+ + N S L + + G +F + +P L LT+LDLS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
P+ ++L L+ L++S+N F + L L LD+S N +
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 330 LSYNSLN---GTIPSGLFTSPLLESIDLRNN 357
LS + I G F L + LRNN
Sbjct: 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE--LLPWKNLRYLDLRSNSL 503
L+ LDLS N + + G +L +L+LS N + + L + L +LD + ++L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 504 KG----SIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
K S+ +L ++ +S+ F +SS+ + ++ NS P +
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 560 --SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG--SVPLSLVNCSFLEVLDVG 615
+L FLD+ P F+ S L +LN++ N + P +N L+VLD
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYS 550
Query: 616 NNRI 619
N I
Sbjct: 551 LNHI 554
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 45 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 146 SNLTNLEHLDLSSNKI 161
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY--GCNFMGSIPA 245
NC G P +L +L+ L + NK + F +V+ S L F+DL G +F G
Sbjct: 313 NCKF-GQFP--TLKLKSLKRLTFTSNKG-GNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQ 367
Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL--SNNKFTGQIPCIFANLTQLSF 303
S + L YLDLS+N + S L+QL HLD SN K + +F +L L +
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIY 425
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS----PLLESIDLRNNQL 359
LD S+ + + L SL + ++ NS +FT L+ + QL
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 360 TGSISNSISEL 370
+ + NS+S L
Sbjct: 486 SPTAFNSLSSL 496
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 250 LSQLTYLDLSYNNFSGH-IPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSN 308
LS L L ++ N+F + +P + L+ L LDLS + P F +L+ L L+ ++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
NQL RL SL I+L N + + P
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 158/419 (37%), Gaps = 60/419 (14%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 330 LSYNSLN---GTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXX 386
LS + I G F L + LRNN + ++ + +
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-----------GLAGLE 228
Query: 387 VELYMFAELKNXXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRL 446
V + E +N F L+ L +I + + L
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF-RLAYLDYYLDDIIDLFNCLTNVSSF 287
Query: 447 QILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGS 506
++ ++ +++ N+ W HL L + L K+L+ L SN KG
Sbjct: 288 SLVSVTIERVKDFSYNFGW-------QHLELVNCKFGQFPTLKLKSLKRLTFTSN--KGG 338
Query: 507 IPFLP---PSLNFISVSNNKLS--GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSL 561
F PSL F+ +S N LS G S +S+ Y++LS N + M L L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398
Query: 562 WFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRING 621
LD + H ++ Q E SV LSL N L LD+ +
Sbjct: 399 EHLDFQ----HSNLKQ----------------MSEFSVFLSLRN---LIYLDISHTHTRV 435
Query: 622 TFPAWLGALSELQVLILRSNRFHG---PITYSVTRFPFPKLRILDLSNNEFTGVLPTRY 677
F LS L+VL + N F P ++ R L LDLS + + PT +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----NLTFLDLSQCQLEQLSPTAF 490
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE--LLPWKNLRYLDLRSNSL 503
L+ LDLS N + + G +L +L+LS N + + L + L +LD + ++L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 504 KG----SIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
K S+ +L ++ +S+ F +SS+ + ++ NS P +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 560 --SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
+L FLD+ P F+ S L +LN+ NQL+ SVP
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 59 LSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ 118
L S H + + L L++L +A N F +++ FT NL L+LS
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 119 IPAEISHLSKLVSLDLSGN 137
P + LS L L+++ N
Sbjct: 486 SPTAFNSLSSLQVLNMASN 504
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)
Query: 650 SVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAI 709
S + F FP+L++LDLS E Q + G S + I GN S
Sbjct: 45 SYSFFSFPELQVLDLSRCEI------------QTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 710 LTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGL-IPYSL 768
L ++K++ + T + N P +G L +LK LN +HN + +P
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLEN-----FP--IGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 769 ENLTQLESLDLSSNKV 784
NLT LE LDLSSNK+
Sbjct: 146 SNLTNLEHLDLSSNKI 161
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY--GCNFMGSIPA 245
NC G P +L +L+ L + NK + F +V+ S L F+DL G +F G
Sbjct: 313 NCKF-GQFP--TLKLKSLKRLTFTSNKG-GNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQ 367
Query: 246 SLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL--SNNKFTGQIPCIFANLTQLSF 303
S + L YLDLS+N + S L+QL HLD SN K + +F +L L +
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIY 425
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS----PLLESIDLRNNQL 359
LD S+ + + L SL + ++ NS +FT L+ + QL
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 360 TGSISNSISEL 370
+ + NS+S L
Sbjct: 486 SPTAFNSLSSL 496
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 20/259 (7%)
Query: 278 RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN--SL 335
+HL+L N KF GQ P + L L L F++N+ G + S L SL + LS N S
Sbjct: 307 QHLELVNCKF-GQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSF 361
Query: 336 NGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAEL 395
G F + L+ +DL N + SN + L E +F L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 396 KNXXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNISE--FPDFLRTQHRLQILDLSD 453
+N N L +L ++ + E PD L LDLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 454 NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL-------KGS 506
Q+ P ++ +L LN+SHN ++ P+K L L + SL K
Sbjct: 480 CQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 507 IPFLPPSLNFISVSNNKLS 525
+ P SL F++++ N +
Sbjct: 538 LQHFPSSLAFLNLTQNDFA 556
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 59 LSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ 118
L S H + + L L++L +A N F +++ FT NL L+LS
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 119 IPAEISHLSKLVSLDLSGNSQLGLDT 144
P + LS L L++S N+ LDT
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDT 511
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
T +DLS + + P L+SL+ LN SHN L + + L L+ LD S N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 787 EIPWQL 792
+L
Sbjct: 533 SKKQEL 538
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGS-IPASLGNLSQLTYLDLSY 260
L NL L +S+ + N S L + + G +F + +P L LT+LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
P+ ++L L+ L++S+N F + L L LD+S N +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE--LLPWKNLRYLDLRSNSL 503
L+ LDLS N + + G +L +L+LS N + + L + L +LD + ++L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 504 KG----SIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559
K S+ +L ++ +S+ F +SS+ + ++ NS P +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468
Query: 560 --SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG--SVPLSLVNCSFLEVLDVG 615
+L FLD+ P F+ S L +LN++ N + P +N L+VLD
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYS 526
Query: 616 NNRI 619
N I
Sbjct: 527 LNHI 530
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 271 LSNLQQLRHLDLSNNKFTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY 329
+ +L+ L+ L++++N ++P F+NLT L LD S+N++ + + LH + +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 330 LSYNSLN---GTIPSGLFTSPLLESIDLRNN 357
LS + I G F L + LRNN
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NN L + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
L L LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 334 SLNGTIPSGLFT-SPLLESIDLRNNQLT 360
L T+P GL T +P LE + L NN LT
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNDLT 161
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN+ T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNDLT 161
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 548 LNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEG--SVPLSLVN 605
++ + PP + SS FL+ N F S+ Q S RL L L N L+ V L N
Sbjct: 344 IHMVCPP--SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401
Query: 606 CSFLEVLDVGNNRINGTFPAWLGALSE-LQVLILRSNRFHGPITYSVTRFPFPKLRILDL 664
S LE LDV N +N A +E + VL L SN G SV R PK+++LDL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG----SVFRCLPPKVKVLDL 457
Query: 665 SNNEFTGV 672
NN +
Sbjct: 458 HNNRIMSI 465
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 421 PYLSMLSLSSCNISEF--PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLS 478
P LSLS +ISE PD + L++L LS N+IR + ++ +D L +L++S
Sbjct: 52 PRTKALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRS-LDFHVFLFNQD-LEYLDVS 108
Query: 479 HNFLTGIELLPWKNLRYLDLRSN 501
HN L I P +LR+LDL N
Sbjct: 109 HNRLQNISCCPMASLRHLDLSFN 131
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 115/321 (35%), Gaps = 28/321 (8%)
Query: 57 LDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFS 116
LD+S +RL + S + L+ L+L+FNDF+ + F L L LS + F
Sbjct: 105 LDVSHNRLQ-----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Query: 117 --GQIPAEISHLS----KLVSLDLSGNSQLGLDTPVLKAXXXXXXXXXXXXXXSVDMSYE 170
+P HLS LVS + G L P SV ++
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP---NTTVLHLVFHPNSLFSVQVNMS 216
Query: 171 VPXXXXXXXXXXXXXXGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKV---NWSS 227
V NC + + R P L N+ L + + K+ W
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 228 PLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNN-------FSGHIPSTLSNLQQLRHL 280
P+ ++++Y I S+ L + FS ++ ++ L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 281 DLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
+S+ F + C + + +FL+F+ N + S L L T+ L N L
Sbjct: 337 SISDTPFIHMV-CP-PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394
Query: 341 SGLFTSPL--LESIDLRNNQL 359
L T + LE++D+ N L
Sbjct: 395 VALMTKNMSSLETLDVSLNSL 415
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 491 KNLRYLDLRSNSLKG--SIPFLPP---SLNFISVSNNKLSGEIPLSFCNMS-SIFYVNLS 544
K L+ L L+ N LK + + SL + VS N L+ C + SI +NLS
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 545 NNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
+N L G + CL + LD+ NN SIP+ + L LN+ NQL+ SVP
Sbjct: 437 SNMLTGSVFRCLP-PKVKVLDLH-NNRIMSIPKDVTHLQALQELNVASNQLK-SVP 489
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
L+LS N +G + L +++ LDL NN+ IP +L L L+ ++NQL
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVP 489
Query: 316 SSSVSRLHSLVTIYLSYNSLNGTIP 340
RL SL I+L N + T P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 225 WSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSN 284
W+ + ++L GS+ L ++ LDL +NN IP +++LQ L+ L++++
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNNRIMSIPKDVTHLQALQELNVAS 482
Query: 285 NKFTGQIPCIFANLTQLSFLDFSNN 309
N+ +F LT L ++ +N
Sbjct: 483 NQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NN L + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 245 ASLGNLSQLTYLDLSYNNFSG-HIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
A+L ++LT L+L + + TL L L DLS+N+ +P + L L+
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT-SPLLESIDLRNNQLT 360
LD S N+L ++ L L +YL N L T+P GL T +P LE + L NN LT
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NN L + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 245 ASLGNLSQLTYLDLSYNNFSG-HIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
A+L ++LT L+L + + TL L L DLS+N+ +P + L L+
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT-SPLLESIDLRNNQLT 360
LD S N+L ++ L L +YL N L T+P GL T +P LE + L NN LT
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NN L + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 7/118 (5%)
Query: 245 ASLGNLSQLTYLDLSYNNFSG-HIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
A+L ++LT L+L + + TL L L DLS+N+ +P + L L+
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQS-LPLLGQTLPALTV 104
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFT-SPLLESIDLRNNQLT 360
LD S N+L ++ L L +YL N L T+P GL T +P LE + L NN LT
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 88 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NN L + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 148 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 198
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
L L LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N
Sbjct: 77 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 334 SLNGTIPSGLFT-SPLLESIDLRNNQLT 360
L T+P GL T +P LE + L NN LT
Sbjct: 136 ELK-TLPPGLLTPTPKLEKLSLANNNLT 162
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 80 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN T
Sbjct: 139 TLPPGLLT--PTPKLEKLSLANNNLT 162
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 201 RLPNLQNLILSYNKNLT---SVFPKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYL 256
L NL LIL+ N+ + VF K+ L ++ N + S+P + L+ LTYL
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTYL 138
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPIS 316
L +N L L LDL NN+ +F LTQL L ++NQL
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 317 SSVSRLHSLVTIYL 330
RL SL I+L
Sbjct: 199 GVFDRLTSLTHIWL 212
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309
L + YL L N H S L L L +L L+ N+ +F LT L L N
Sbjct: 62 LPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LESIDLRNNQL 359
QL +L +L +YL +N L ++P G+F L +DL NNQL
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + S+P L LT LD+S+N + L L +L+ L L N+ P +
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 298 LTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLL 349
+L L +NN L + ++ L +L T+ L NSL TIP G F S LL
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 274 LQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
L L LDLS+N+ +P + L L+ LD S N+L ++ L L +YL N
Sbjct: 76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 334 SLNGTIPSGLFT-SPLLESIDLRNNQLT 360
L T+P GL T +P LE + L NN LT
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
L L+L+ NQL+ S+PL L VLDV NR+ L L ELQ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 645 GPITYSVTRFPFPKLRILDLSNNEFT 670
+T P PKL L L+NN T
Sbjct: 138 TLPPGLLT--PTPKLEKLSLANNNLT 161
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ L+FS N++T L P L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 180 ISSNKVS 186
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 198 NIFRLPNLQNL--ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
+I L NL NL + +N +T + P N ++ R N + I A L L+ L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--LSSNTISDISA-LSGLTSLQQ 155
Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
L S N + P L+NL L LD+S+NK + + A LT L L +NNQ++
Sbjct: 156 LSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI- 210
Query: 316 SSSVSRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLESIDLRNNQLT 360
+ + L +L + L+ N L GT+ S T+ L +DL NNQ++
Sbjct: 211 -TPLGILTNLDELSLNGNQLKDIGTLAS--LTN--LTDLDLANNQIS 252
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L SNNK + ANLT +++L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSA 356
Query: 307 SNNQL 311
+NQ+
Sbjct: 357 GHNQI 361
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 16/223 (7%)
Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
L+ L LSS IS+ L LQ L S NQ+ P + N+ TL L++S N +
Sbjct: 131 LNRLELSSNTISDIS-ALSGLTSLQQLSFSSNQVTDLKP--LANLT--TLERLDISSNKV 185
Query: 483 TGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
+ I +L NL L +N + P + +L+ +S++ N+L +I + +++++
Sbjct: 186 SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIG-TLASLTNLTD 243
Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
++L+NN ++ + P + L L + N P + + LT L LN+NQLE P
Sbjct: 244 LDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 301 IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 339
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
L NL++L + ++ N + P L+NL L L L NN+ T P NLT L+ L+
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
S+N ++ S++S L SL + S N + P T+ LE +D+ +N+++
Sbjct: 137 SSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTT--LERLDISSNKVS 186
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ L+FS N++T L P L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 180 ISSNKVS 186
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 198 NIFRLPNLQNL--ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
+I L NL NL + +N +T + P N ++ R N + I A L L+ L
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--LSSNTISDISA-LSGLTSLQQ 155
Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315
L S N + P L+NL L LD+S+NK + + A LT L L +NNQ++
Sbjct: 156 LSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI- 210
Query: 316 SSSVSRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLESIDLRNNQLT 360
+ + L +L + L+ N L GT+ S T+ L +DL NNQ++
Sbjct: 211 -TPLGILTNLDELSLNGNQLKDIGTLAS--LTN--LTDLDLANNQIS 252
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 16/223 (7%)
Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
L+ L LSS IS+ L LQ L S NQ+ P + N+ TL L++S N +
Sbjct: 131 LNRLELSSNTISDIS-ALSGLTSLQQLSFSSNQVTDLKP--LANLT--TLERLDISSNKV 185
Query: 483 TGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFY 540
+ I +L NL L +N + P + +L+ +S++ N+L +I + +++++
Sbjct: 186 SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DIG-TLASLTNLTD 243
Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVP 600
++L+NN ++ + P + L L + N P + + LT L LN+NQLE P
Sbjct: 244 LDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 601 LSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 301 IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 339
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L NNK + ANLT +++L
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 356
Query: 307 SNNQL 311
+NQ+
Sbjct: 357 GHNQI 361
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
L NL++L + ++ N + P L+NL L L L NN+ T P NLT L+ L+
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
S+N ++ S++S L SL + S N + P T+ LE +D+ +N+++
Sbjct: 137 SSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTT--LERLDISSNKVS 186
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 123/492 (25%), Positives = 191/492 (38%), Gaps = 81/492 (16%)
Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHI--PSTLSNLQQLRHLDLSNNK 286
LR +DL P + L L L L + S + NL+ L LDLS N+
Sbjct: 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134
Query: 287 FTG-QIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH--SLVTIYLSYNSLNGTIPSGL 343
+ F L L +DFS+NQ+ + L +L L+ NSL +
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194
Query: 344 ------FTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKN 397
F + +LE +D+ N T I+ + S + + F +K+
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254
Query: 398 XXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNISEFPDF------LRTQHRLQILDL 451
P ++F L+ S+ ++S F T L++L+L
Sbjct: 255 -----------------PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 452 SDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL--------TGIELLPW------------- 490
+ N+I + G D L LNLS+N L G+ + +
Sbjct: 298 AYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355
Query: 491 ------KNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLS 544
+ L+ LDLR N+L +I F+ PS+ I +S NKL + L N+++ ++LS
Sbjct: 356 QTFKFLEKLQTLDLRDNALT-TIHFI-PSIPDIFLSGNKL---VTLPKINLTANL-IHLS 409
Query: 545 NNSLNGM--IPPCLANSSLWFLDMRMNNFHG-SIPQTFSKGSRLTILNLNDNQLEGSVPL 601
N L + + L L L + N F S QT S+ L L L +N L+ +
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469
Query: 602 SLV-----NCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF 656
L S L+VL + +N +N P L+ L+ L L SNR S P
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL---TVLSHNDLP- 525
Query: 657 PKLRILDLSNNE 668
L ILD+S N+
Sbjct: 526 ANLEILDISRNQ 537
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 115/286 (40%), Gaps = 41/286 (14%)
Query: 422 YLSMLSLSSCNISEF---PDFLRTQHRLQILDLSDNQIRGGI--PNWIWNVGK-DTLNHL 475
+L L L C +S+ + R L LDLS NQIR P++ GK ++L +
Sbjct: 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF----GKLNSLKSI 153
Query: 476 NLSHN--FLT---GIELLPWKNLRYLDLRSNSLKGSI---------PFLPPSLNFISVSN 521
+ S N FL +E L K L + L +NSL + PF L + VS
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
Query: 522 NKLSGEIPLSFCNM---SSIFYVNLSNNSLNGMIP------------PCLANSSLWFLDM 566
N + +I +F N S F + L+++ + LA SS+ LD+
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAW 626
+ F L +LNL N++ + L+VL++ N + + +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGV 672
L ++ + L+ N H I T KL+ LDL +N T +
Sbjct: 334 FYGLPKVAYIDLQKN--HIAIIQDQTFKFLEKLQTLDLRDNALTTI 377
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 139/344 (40%), Gaps = 62/344 (18%)
Query: 456 IRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSNSLKGSIPFLPP 512
I+ N + + ++ HL+LSH F+ + K+L+ L+L N +
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI--------- 302
Query: 513 SLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNNF 571
NK++ E +F + ++ +NLS N L + + ++D++ N+
Sbjct: 303 ---------NKIADE---AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 572 HGSIPQTFSKGSRLTILNLNDNQLEG-----SVPLSLVNCSFLEVLDVGNNRINGTFPAW 626
QTF +L L+L DN L S+P ++ + L L +IN T A
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP----KINLT--AN 404
Query: 627 LGALSELQVLILRSNRFHG-PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM 685
L LSE NR I Y + R P L+IL L+ N F+
Sbjct: 405 LIHLSE--------NRLENLDILYFLLRVP--HLQILILNQNRFSSC------------- 441
Query: 686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVG 745
G+ +E ++ + E + + ++ + L+ + L+ N P V
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501
Query: 746 KLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
L +L+GL+ + N+LT L L LE LD+S N++ P
Sbjct: 502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 70 SDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKL 129
+D + + L +LQ+LNL++N Y S F P +A+++L + + L KL
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364
Query: 130 VSLDLSGNS 138
+LDL N+
Sbjct: 365 QTLDLRDNA 373
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 21/149 (14%)
Query: 644 HGPITYSVTRFP-FPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYG 702
+ P+T F P LRILDL +++ + P FQ + H +
Sbjct: 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP----DAFQGLFHL-------------FE 101
Query: 703 NEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQG-RIPEVVGKLNSLKGLNFSHNKLT 761
Y L+ + + L T +DLS N+ + + GKLNSLK ++FS N++
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161
Query: 762 GLIPYSLENL--TQLESLDLSSNKVAGEI 788
+ + LE L L L++N + +
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 58/139 (41%), Gaps = 30/139 (21%)
Query: 197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL 256
E + L NLQ L LSYN +LY NF G L ++ Y+
Sbjct: 308 EAFYGLDNLQVLNLSYN----------------LLGELYSSNFYG--------LPKVAYI 343
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-----QIPCIFANLTQLSFLDFSNNQL 311
DL N+ + T L++L+ LDL +N T IP IF + +L L N
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 312 NGPISSSVSRLHSLVTIYL 330
N I S +RL +L +Y
Sbjct: 404 N-LIHLSENRLENLDILYF 421
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 125/320 (39%), Gaps = 83/320 (25%)
Query: 54 VTGLDLSCSRLHGSIPS-DSSLF-SLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLS 111
V LDLS HG + S +S +F +L L++LNLA+N N F NL LNLS
Sbjct: 268 VRHLDLS----HGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLS 322
Query: 112 VSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKAXXXXXXXXXXXXXXSVDMSYEV 171
+ + L K+ +DL N + K
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK----------------------- 359
Query: 172 PXXXXXXXXXXXXXXGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPL-- 229
L+ + I +P++ ++ LS NK +T PK+N ++ L
Sbjct: 360 ----------FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT--LPKINLTANLIH 407
Query: 230 ----RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSG----HIPSTLSNLQQLRHLD 281
R +L F+ +P L L L+ N FS PS +L+QL
Sbjct: 408 LSENRLENLDILYFLLRVP-------HLQILILNQNRFSSCSGDQTPSENPSLEQL---- 456
Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
F G+ N+ QL++ +L + +S L L YL++N LN ++P
Sbjct: 457 -----FLGE------NMLQLAW----ETELCWDVFEGLSHLQVL---YLNHNYLN-SLPP 497
Query: 342 GLFTS-PLLESIDLRNNQLT 360
G+F+ L + L +N+LT
Sbjct: 498 GVFSHLTALRGLSLNSNRLT 517
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 229 LRFMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKF 287
LR +DL + I + LS L YL+L+ N IP+ L+ L +L LDLS N
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHL 219
Query: 288 TGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSP 347
+ P F L L L +Q+ ++ L SLV I L++N+L +P LFT P
Sbjct: 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFT-P 277
Query: 348 L--LESIDLRNN 357
L LE I L +N
Sbjct: 278 LHHLERIHLHHN 289
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 101/254 (39%), Gaps = 56/254 (22%)
Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
+P S +RL LNL++NQ++ S + LE+L + N I L+ L
Sbjct: 57 EVPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 634 QVLILRSNRF----HGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNN 689
L L NR +G Y KL+ L L NN + P+ F ++ +
Sbjct: 115 NTLELFDNRLTTIPNGAFVY------LSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDL 167
Query: 690 NSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNI--------FTTIDLSGNK------ 735
+ + YI+ G + + ++ +N+ M + I +DLSGN
Sbjct: 168 GELKRLS-YISEG--AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224
Query: 736 --FQGRIP-----------EVVGK-----LNSLKGLNFSHNKLTGLIPYSL-ENLTQLES 776
FQG + +V+ + L SL +N +HN LT L+P+ L L LE
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLER 283
Query: 777 LDLSSNKVAGEIPW 790
+ L N PW
Sbjct: 284 IHLHHN------PW 291
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 238 NFMGSIPAS--LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIF 295
N +G I + G L L L+L N +G P+ ++ L L NK +F
Sbjct: 39 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98
Query: 296 ANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN 336
L QL L+ +NQ++ + S L+SL ++ L+ N N
Sbjct: 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 704 EYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE--VVGKLNSLKGLNFSHNKLT 761
E + T +G+ E+ + + + TT L + GRI + G+L L L N+LT
Sbjct: 9 EGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 762 GLIPYSLENLTQLESLDLSSNKV 784
G+ P + E + ++ L L NK+
Sbjct: 68 GIEPNAFEGASHIQELQLGENKI 90
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 211 SYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPST 270
+Y +T + P N + R L N + + L NLSQLT+L++ N S +
Sbjct: 206 AYVNQITDITPVANXT---RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD--INA 260
Query: 271 LSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
+ +L +L+ L++ +N+ + + NL+QL+ L +NNQL + L +L T++L
Sbjct: 261 VKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Query: 331 SYNSLNGTIP 340
S N + P
Sbjct: 319 SQNHITDIRP 328
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLDFSN 308
L +L YLD+SY N L L L ++ N F + +FAN T L+FLD S
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 477
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSL 335
QL LH L + +S+N+L
Sbjct: 478 CQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 241 GSIPASLGNLSQLTYLDLSYN--NFSGHIPSTLSNLQQLRHLDLSNNKFTGQI--PCIFA 296
GSI L L+YLDLS N +FSG + LRHLDLS F G I F
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMSANFM 391
Query: 297 NLTQLSFLDFSNNQLNGPIS-SSVSRLHSLVTIYLSY 332
L +L LDF ++ L S+ L L+ + +SY
Sbjct: 392 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 428
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 744 VGKLNSLKGLNFSHNKLTGL-IPYSLENLTQLESLDLSSNKV 784
+G+L +LK LN +HN + +P NLT L +DLS N +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLDFSN 308
L +L YLD+SY N L L L ++ N F + +FAN T L+FLD S
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSL 335
QL LH L + +S+N+L
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 241 GSIPASLGNLSQLTYLDLSYN--NFSGHIPSTLSNLQQLRHLDLSNNKFTGQI--PCIFA 296
GSI L L+YLDLS N +FSG + LRHLDLS F G I F
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMSANFM 396
Query: 297 NLTQLSFLDFSNNQLNGPIS-SSVSRLHSLVTIYLSY 332
L +L LDF ++ L S+ L L+ + +SY
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 744 VGKLNSLKGLNFSHNKLTGL-IPYSLENLTQLESLDLSSNKV 784
+G+L +LK LN +HN + +P NLT L +DLS N +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 238 NFMGSIPASL-GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
N + S+P + L+QLT L LS N L +L L L NK +F
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97
Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
LTQL L NQL RL SL I+L N + + P
Sbjct: 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
L+L +NK +F LTQL+ L S NQ+ +L L +YL N L +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-S 90
Query: 339 IPSGLFTS-PLLESIDLRNNQL 359
+P+G+F L+ + L NQL
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL 112
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 723 LNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
L T + LS N+ Q V KL L L NKL L + LTQL+ L L +N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 783 KVA 785
++
Sbjct: 111 QLK 113
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
T ++L NK Q V KL L L+ S N++ L + LT+L L L NK+
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 238 NFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFAN 297
N + +PA + NLS L LDLS+N + +P+ L + QL++ +N T +P F N
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGN 314
Query: 298 LTQLSFLDFSNNQL 311
L L FL N L
Sbjct: 315 LCNLQFLGVEGNPL 328
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 75 FSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDL 134
L +LQI N++ N F Y + L L L+ +S + ++PAEI +LS L LDL
Sbjct: 229 LDLSNLQIFNISANIFKYDF----------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277
Query: 135 SGN 137
S N
Sbjct: 278 SHN 280
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNK 783
+ T + L+GN +P + L++L+ L+ SHN+LT L P L + QL+ N
Sbjct: 247 DFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNM 304
Query: 784 VAGEIPWQL 792
V +PW+
Sbjct: 305 VTT-LPWEF 312
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641
LT L LN N L +P + N S L VLD+ +NR+ + PA LG+ +L+ N
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
+ S+PA + Q +L+ N + P +L L+ L ++NK T +F LT
Sbjct: 24 LASVPAGIPTDKQRLWLN--NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81
Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYN 333
QL+ LD ++N L + L SL IYL N
Sbjct: 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 731 LSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
L+ N+ P V L +L+ L F+ NKLT + + LTQL LDL+ N +
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 282 LSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPS 341
L+NN+ T P +F +L L L F++N+L + +L L + L+ N L +IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPR 98
Query: 342 GLF 344
G F
Sbjct: 99 GAF 101
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
+ S+PA + +Q+ L L N + P +L QL +L+L+ N+ T +F LT
Sbjct: 31 LASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYL 330
+L+ L NQL L SL IYL
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 267 IPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLV 326
+P+ + Q+ HL + N+ T P +F +LTQL++L+ + NQL +L L
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 327 TIYLSYNSLNGTIPSGLF 344
+ L N L +IP G+F
Sbjct: 92 HLALHINQLK-SIPMGVF 108
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 190 GLQGSIPENIFRL---PNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPAS 246
G + S+ + F +Q+LILS + N+ S F N+ P F F G
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF------TFKGL---- 272
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
S + DLS + + S S+ L L L+ N+ F LT L L+
Sbjct: 273 --EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 307 SNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQL 359
S N L S L L + LSYN + P L+ + L NQL
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 126/349 (36%), Gaps = 81/349 (23%)
Query: 507 IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLS---------NNSLNGMIPPCLA 557
+P LP +N++ +S N ++ SF + + ++ + NN+ G+
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL------ 78
Query: 558 NSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV-------PLSLVNCSFLE 610
SSL L + N F F+ + L +L L L+G+V PL+ LE
Sbjct: 79 -SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-----SLE 132
Query: 611 VLDVGNNRINGTFPA-WLGALSELQVLILRSNRFHGPITYSVTRF--------------- 654
+L + +N I PA + + VL L N+ + F
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192
Query: 655 ---------------PFPKLRI--LDLSNNEFTGVLPTRYFQ-----NFQAMMHGNN--- 689
PF I LDLS N F + R+F Q+++ N+
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252
Query: 690 NSAEGGNMYINYGNEYYSAILT--VKGVNMEMEKVLNIFTTI----------DLSGNKFQ 737
S+ G + + N + + VK ++ K+ + ++ L+ N+
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312
Query: 738 GRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
L L LN S N L + ENL +LE LDLS N +
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLS---------NNKFTGQIPCIFANLTQL 301
+ + Y+DLS N+ + ++ S LQ L+ L + NN F G I L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL--LESIDLRNNQL 359
FL NG L +L + L+ +L+G + SG F PL LE + LR+N +
Sbjct: 90 QFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 238 NFMGSIPASL-GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
NF+GSI + + NL +L LDLSYN+ + L L+ L L N+ IF
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 297 NLTQL 301
LT L
Sbjct: 393 RLTSL 397
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%)
Query: 201 RLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSY 260
RL L+ L +S+ L ++ P + L + + CN ++ +L L +L+LSY
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVS 320
N S S L L +L+ + L + P F L L L+ S NQL S
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Query: 321 RLHSLVTIYLSYNSL 335
+ +L T+ L N L
Sbjct: 318 SVGNLETLILDSNPL 332
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 119/309 (38%), Gaps = 63/309 (20%)
Query: 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSL 335
+ R LDL N+ FA+ L L+ + N ++ + + L +L T+ L N L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 336 NGTIPSGLFTS-PLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAE 394
IP G+FT L +D+ N++ + YMF +
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIVILLD-------------------------YMFQD 126
Query: 395 LKNXXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNISEFPD----------FLRTQH 444
L N S L L+L CN++ P LR +H
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 445 ---------------RLQILDLSD-NQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELL 488
RL++L++S + PN ++ + L L+++H LT + L
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN---LTSLSITHCNLTAVPYL 242
Query: 489 PWKN---LRYLDLRSN---SLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVN 542
++ LR+L+L N +++GS+ L I + +L+ P +F ++ + +N
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 543 LSNNSLNGM 551
+S N L +
Sbjct: 303 VSGNQLTTL 311
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
++P+ +RL L+L N+++ + LE L++ N ++ P L L
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82
Query: 634 QVLILRSNRFH----GPITYSVTRFPFPKLRILDLSNNEFTGVLPTRY--FQNFQAMMHG 687
+ L LRSNR G T L LD+S N+ +L + N +++ G
Sbjct: 83 RTLGLRSNRLKLIPLGVFT------GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136
Query: 688 NNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKL 747
+N+ +YI++ +S + +++ + +E + +I T E + L
Sbjct: 137 DNDL-----VYISH--RAFSGLNSLEQLTLEKCNLTSIPT--------------EALSHL 175
Query: 748 NSLKGLNFSHNKLTGLIPYSLENLTQLESLDLS 780
+ L L H + + YS + L +L+ L++S
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ LNF N++T L P L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFG-NQVTDLKP--LANLTTLERLD 178
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 179 ISSNKVS 185
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L SNNK + ANLT +++L
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSA 355
Query: 307 SNNQL 311
+NQ+
Sbjct: 356 GHNQI 360
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 471 TLNHLNLSHNFLTGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEI 528
TL L++S N ++ I +L NL L +N + P + +L+ +S++ N+L +I
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DI 231
Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
+ +++++ ++L+NN ++ + P + L L + N P + + LT L
Sbjct: 232 G-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
LN+NQLE P+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 288 ELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 338
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 123
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ LNF N++T L P L NLT LE LD
Sbjct: 124 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFG-NQVTDLKP--LANLTTLERLD 178
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 179 ISSNKVS 185
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L NNK + ANLT +++L
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 355
Query: 307 SNNQL 311
+NQ+
Sbjct: 356 GHNQI 360
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 471 TLNHLNLSHNFLTGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEI 528
TL L++S N ++ I +L NL L +N + P + +L+ +S++ N+L +I
Sbjct: 173 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DI 231
Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
+ +++++ ++L+NN ++ + P + L L + N P + + LT L
Sbjct: 232 G-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
LN+NQLE P+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 288 ELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 338
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 22/222 (9%)
Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
+L+++ N+ TF L IL L+ N + + L L++ +NR+
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQ 682
LS+L+ L LR+N +Y+ R P LR LDL + + F+
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNR--VPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 683 AMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE 742
+ Y+N G I + + + +E+ ++LSGN+ P
Sbjct: 157 NL------------RYLNLGMCNLKDIPNLTAL-VRLEE-------LELSGNRLDLIRPG 196
Query: 743 VVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
L SL+ L H ++ + + ++L LE L+LS N +
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 194 SIPENIF-RLPNLQNLILSYNKNLTSVFPK-----VNWSSPLRFMDLYGCNFMGSIPASL 247
SIP F R+P+L+ L L K L + VN LR+++L CN + IP +L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN----LRYLNLGMCN-LKDIP-NL 174
Query: 248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFS 307
L +L L+LS N P + L LR L L + + F +L L L+ S
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 308 NNQLNGPISSSVSRLHSLVTIYLSYN 333
+N L + LH L ++L++N
Sbjct: 235 HNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 252 QLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
+T L L N F+ +P LSN + L +DLSNN+ + F+N+TQL L S N+L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 312 NGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
+ L SL + L N ++ +P G F
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAF 122
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Query: 205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLY-GCNFMGSIPASLGNLSQLTYLDLSYNNF 263
L ++ NK L V PK P +LY N +P L N LT +DLS N
Sbjct: 11 LDTVVRCSNKGL-KVLPK---GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI 66
Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH 323
S + SN+ QL L LS N+ P F L L L N ++ + + L
Sbjct: 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 324 SLVTIYLSYNSL 335
+L + + N L
Sbjct: 127 ALSHLAIGANPL 138
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 585 LTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644
+T L L+ NQ VP L N L ++D+ NNRI+ +++L LIL NR
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 645 G--PITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH 686
P T+ + LR+L L N+ + V+P F + A+ H
Sbjct: 92 CIPPRTFDGLK----SLRLLSLHGNDIS-VVPEGAFNDLSALSH 130
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 275 QQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS 334
+ + L L N+FT +P +N L+ +D SNN+++ + S S + L+T+ LSYN
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 335 LNGTIP 340
L P
Sbjct: 90 LRCIPP 95
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 713 KGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLT 772
KG+ + + + T + L GN+F +P+ + L ++ S+N+++ L S N+T
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 773 QLESLDLSSNKV 784
QL +L LS N++
Sbjct: 79 QLLTLILSYNRL 90
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 87/221 (39%), Gaps = 44/221 (19%)
Query: 188 NCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMD--------LYGCNF 239
NC +P+ ++ LP LQ+L ++ N+ +++ K +W+ D G N
Sbjct: 500 NCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYXGYNN 559
Query: 240 MGSIPAS------------------------LGNLSQLTYLDLSYNNFSGHIPSTLSNL- 274
+ PAS G +LT L L YN IP
Sbjct: 560 LEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT 618
Query: 275 QQLRHLDLSNNKFTGQIPCIF--ANLTQLSFLDFSNNQLNGP---ISSSVSRLHSL--VT 327
Q+ L S+NK IP IF ++ +DFS N++ IS S + T
Sbjct: 619 DQVEGLGFSHNKLK-YIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKGINAST 677
Query: 328 IYLSYNSLNGTIPSGLF-TSPLLESIDLRNNQLTGSISNSI 367
+ LSYN + P+ LF T + +I L NN T NS+
Sbjct: 678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLXTSIPENSL 717
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 238 NFMGSIPAS-LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
N + +PA+ SQLT LD+ +N S P L L+ L+L +N+ + FA
Sbjct: 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94
Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
T L+ L +N + ++ + +L+T+ LS+N L+ T
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
T++D+ N PE+ KL LK LN HN+L+ L + T L L L SN +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL 256
ENIF + N L +N ++ P + LR + L + S P+ L LT L
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQ-RLMLRRVALKNVD---SSPSPFQPLRNLTIL 485
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT--------GQIPCIFANLTQLSFLDFSN 308
DLS NN + L L++L LDL +N G L+ L L+ +
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LESIDLRNNQLTG 361
N + L L I L N+LN T+P+ +F + + L+S++L+ N +T
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 598
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 421 PYLSMLSLSSCN-ISEFPDFLRTQHRLQILDLSDNQIRG--GIPNWIWNVGKDTLNHLNL 477
P+L L ++SCN ++E P+ ++ L+ L + +N ++ +P L +L +
Sbjct: 91 PHLESL-VASCNSLTELPELPQS---LKSLLVDNNNLKALSDLPPL--------LEYLGV 138
Query: 478 SHNFLTGI-ELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
S+N L + EL L+ +D+ +NSLK +P LPPSL FI+ NN+L E+P N+
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLE-ELP-ELQNLP 195
Query: 537 SIFYVNLSNNSLNGM 551
+ + NNSL +
Sbjct: 196 FLTAIYADNNSLKKL 210
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI------------ 294
L NL+++T L+LS N S ++ LQ ++ LDL++ + T P
Sbjct: 87 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 144
Query: 295 --------FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS 346
A LT L +L NNQ+N + ++ L L T+ N ++ P L +
Sbjct: 145 NQITNISPLAGLTNLQYLSIGNNQVND--LTPLANLSKLTTLRADDNKISDISP--LASL 200
Query: 347 PLLESIDLRNNQLT 360
P L + L++NQ++
Sbjct: 201 PNLIEVHLKDNQIS 214
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 238 NFMGSIPAS-LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
N + +PA+ SQLT LD+ +N S P L L+ L+L +N+ + FA
Sbjct: 40 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 99
Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
T L+ L +N + ++ + +L+T+ LS+N L+ T
Sbjct: 100 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
T++D+ N PE+ KL LK LN HN+L+ L + T L L L SN +
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL 256
ENIF + N L +N ++ P + LR + L + S P+ L LT L
Sbjct: 435 ENIFEIYLSYNKYLQLTRNSFALVPSLQ-RLMLRRVALKNVD---SSPSPFQPLRNLTIL 490
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT--------GQIPCIFANLTQLSFLDFSN 308
DLS NN + L L++L LDL +N G L+ L L+ +
Sbjct: 491 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 550
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LESIDLRNNQLTG 361
N + L L I L N+LN T+P+ +F + + L+S++L+ N +T
Sbjct: 551 NGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 603
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 238 NFMGSIPAS-LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA 296
N + +PA+ SQLT LD+ +N S P L L+ L+L +N+ + FA
Sbjct: 45 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 104
Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGT 338
T L+ L +N + ++ + +L+T+ LS+N L+ T
Sbjct: 105 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784
T++D+ N PE+ KL LK LN HN+L+ L + T L L L SN +
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 197 ENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYL 256
ENIF + N L +N ++ P + LR + L + S P+ L LT L
Sbjct: 440 ENIFEIYLSYNKYLQLTRNSFALVPSLQ-RLMLRRVALKNVD---SSPSPFQPLRNLTIL 495
Query: 257 DLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT--------GQIPCIFANLTQLSFLDFSN 308
DLS NN + L L++L LDL +N G L+ L L+ +
Sbjct: 496 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 555
Query: 309 NQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL-LESIDLRNNQLTG 361
N + L L I L N+LN T+P+ +F + + L+S++L+ N +T
Sbjct: 556 NGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITS 608
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 1/154 (0%)
Query: 205 LQNLILSYNKNLTSVFPKV-NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF 263
L+ L LS N L SV P + L + L C P L+ L YL L N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH 323
T +L L HL L N+ + F L L L N++ + L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN 357
L+T+YL N+L+ L L+ + L +N
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 59/154 (38%), Gaps = 1/154 (0%)
Query: 205 LQNLILSYNKNLTSVFPKV-NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF 263
L+ L LS N L SV P + L + L C P L+ L YL L N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH 323
T +L L HL L N+ + F L L L N++ + L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 324 SLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNN 357
L+T+YL N+L+ L L+ + L +N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 89/220 (40%), Gaps = 22/220 (10%)
Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
+L+++ N+ TF L IL L+ N + + L L++ +NR+
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQ 682
LS+L+ L LR+N +Y+ R P LR LDL + + F+
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIESIPSYAFNR--VPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 683 AMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE 742
+ Y+N G I + + + +E+ ++LSGN+ P
Sbjct: 157 NL------------RYLNLGMCNLKDIPNLTAL-VRLEE-------LELSGNRLDLIRPG 196
Query: 743 VVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSN 782
L SL+ L H ++ + + ++L LE L+LS N
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 194 SIPENIF-RLPNLQNLILSYNKNLTSVFPK-----VNWSSPLRFMDLYGCNFMGSIPASL 247
SIP F R+P+L+ L L K L + VN LR+++L CN + IP +L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN----LRYLNLGMCN-LKDIP-NL 174
Query: 248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFS 307
L +L L+LS N P + L LR L L + + F +L L L+ S
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 308 NNQLNGPISSSVSRLHSLVTIYLSYN 333
+N L + LH L ++L++N
Sbjct: 235 HNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 251 SQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLS---------NNKFTGQIPCIFANLTQL 301
+ + Y+DLS N+ + ++ S LQ L+ L + NN F G I L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 302 SFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL--LESIDLRNNQL 359
FL NG L +L + L+ +L+G + SG F PL LE + LR+N +
Sbjct: 90 QFLQLETGAFNG--------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 122/309 (39%), Gaps = 77/309 (24%)
Query: 507 IPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLS---------NNSLNGMIPPCLA 557
+P LP +N++ +S N ++ SF + + ++ + NN+ G+
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL------ 78
Query: 558 NSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617
SSL L + N F F+ + L +L L L+G+V
Sbjct: 79 -SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV------------------ 119
Query: 618 RINGTFPAWLGALSELQVLILRSNRFHG--PITYSVTRFPFPKLRILDLSNNEFTGVLPT 675
++G F L+ L++L+LR N P ++ + + +LDL+ N+ +
Sbjct: 120 -LSGNF---FKPLTSLEMLVLRDNNIKKIQPASFFLN---MRRFHVLDLTFNKVKSICEE 172
Query: 676 RYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIF-----TTID 730
NFQ ++ + NEY+ + EK N F TT+D
Sbjct: 173 DLL-NFQGKHF---TLLRLSSITLQDMNEYW----------LGWEKCGNPFKNTSITTLD 218
Query: 731 LSGNKFQGRIPE-----VVG-KLNSL-------KGLNFSHNKLTGLIPYSLENL--TQLE 775
LSGN F+ + + + G K+ SL G +F H ++ + L + ++
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278
Query: 776 SLDLSSNKV 784
+ DLS +K+
Sbjct: 279 TCDLSKSKI 287
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 243 IPASL-GNLSQLTYLDLSYNNFSGHIPSTL-SNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300
IPA+L ++ L++L+L N +PS L +L+ L ++ +NK IF + +
Sbjct: 138 IPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPK 195
Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
L L+ ++NQL RL SL I+L N + + P
Sbjct: 196 LKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 128
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ L+F N++T L P L NLT LE LD
Sbjct: 129 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFG-NQVTDLKP--LANLTTLERLD 183
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 184 ISSNKVS 190
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L NNK + ANLT +++L
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSA 360
Query: 307 SNNQL 311
+NQ+
Sbjct: 361 GHNQI 365
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 198 NIFRLPNLQNL--ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
+I L NL NL + +N +T + P N ++ R N + I A LS LT
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--LSSNTISDISA----LSGLTS 157
Query: 256 LD-LSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP 314
L LS+ N + L+NL L LD+S+NK + + A LT L L +NNQ++
Sbjct: 158 LQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214
Query: 315 ISSSVSRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLESIDLRNNQLT 360
+ + L +L + L+ N L GT+ S T+ L +DL NNQ++
Sbjct: 215 --TPLGILTNLDELSLNGNQLKDIGTLAS--LTN--LTDLDLANNQIS 256
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 471 TLNHLNLSHNFLTGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEI 528
TL L++S N ++ I +L NL L +N + P + +L+ +S++ N+L +I
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DI 236
Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
+ +++++ ++L+NN ++ + P + L L + N P + + LT L
Sbjct: 237 G-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
LN+NQLE P+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 293 ELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 659 LRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNME 718
L ++ SNN+ T + P + ++ NN A+ + N N + + +++
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLA-NLTNLTGLTLFNNQITDID 127
Query: 719 MEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLD 778
K L ++LS N I + G L SL+ L+F N++T L P L NLT LE LD
Sbjct: 128 PLKNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFG-NQVTDLKP--LANLTTLERLD 182
Query: 779 LSSNKVA 785
+SSNKV+
Sbjct: 183 ISSNKVS 189
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDF 306
+ NL LTYL L +NN S P +S+L +L+ L +NNK + ANLT +++L
Sbjct: 304 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 359
Query: 307 SNNQL 311
+NQ+
Sbjct: 360 GHNQI 364
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 744 VGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
V LN+L +NFS+N+LT + P L+NLT+L + +++N++A P
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 106
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 20/168 (11%)
Query: 198 NIFRLPNLQNL--ILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTY 255
+I L NL NL + +N +T + P N ++ R N + I A LS LT
Sbjct: 103 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE--LSSNTISDISA----LSGLTS 156
Query: 256 LD-LSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGP 314
L LS+ N + L+NL L LD+S+NK + + A LT L L +NNQ++
Sbjct: 157 LQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 213
Query: 315 ISSSVSRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLESIDLRNNQLT 360
+ + L +L + L+ N L GT+ S T+ L +DL NNQ++
Sbjct: 214 --TPLGILTNLDELSLNGNQLKDIGTLAS--LTN--LTDLDLANNQIS 255
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 471 TLNHLNLSHNFLTGIELLP-WKNLRYLDLRSNSLKGSIPF-LPPSLNFISVSNNKLSGEI 528
TL L++S N ++ I +L NL L +N + P + +L+ +S++ N+L +I
Sbjct: 177 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-DI 235
Query: 529 PLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTIL 588
+ +++++ ++L+NN ++ + P + L L + N P + + LT L
Sbjct: 236 G-TLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 291
Query: 589 NLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
LN+NQLE P+S N L L + N I+ P + +L++LQ L +N+
Sbjct: 292 ELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 342
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNL-QQLRHLDLSNNKFTGQIPCIF--AN 297
G +PA G+ +L L+L+YN + IP+ +Q+ +L ++NK IP IF +
Sbjct: 344 GKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS 400
Query: 298 LTQLSFLDFSNNQLNG-------PISSSVSRLHSLVTIYLSYNSLNGTIPSGLF-TSPLL 349
++ S +DFS N++ P+ + + ++ +I LS N ++ P LF T L
Sbjct: 401 VSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL 459
Query: 350 ESIDLRNNQLTGSISNSISE 369
SI+L N LT NS+ +
Sbjct: 460 SSINLXGNXLTEIPKNSLKD 479
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 229 LRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT 288
L + L CN + + L + +LDLS+N+ +G LS+L+ L +L++++N
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR 535
Query: 289 GQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
P + L+Q S ++ S+N P+ + S +H + + + L + + P
Sbjct: 536 IIPPHLLPALSQQSIINLSHN----PLDCTCSNIHFITWYKENLHKLEDSEETTCANPPS 591
Query: 349 LESIDLRNNQL 359
L + L + +L
Sbjct: 592 LRGVKLSDVKL 602
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIE---LLPWKNLRYLDLRSN 501
+L++LD++ + P+ + L LNLSH L L ++LR+L+L+ N
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQ-NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 502 SLK-GSIPF-----LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPC 555
S + GSI + SL + +S+ L +F + ++ +++LS+NSL G
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 556 LANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSV 599
L++ +L+M NN P S+ +I+NL+ N L+ +
Sbjct: 519 LSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTC 562
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 116/294 (39%), Gaps = 41/294 (13%)
Query: 534 NMSSIFYVNLSNNSLNGM-IPPCLANSSLWFLDMRMNNFH---GSIPQTFSKGSRLTILN 589
N+ ++ ++L +N ++ + +P +L LD + N H + + + L+ LN
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLS-LN 184
Query: 590 LNDNQLEGSVPLSLVNCSF--------LEVLDVGNNRINGTFPA-WLGALSELQVLILRS 640
N N ++G P + ++ F L + + N T + WLG + L S
Sbjct: 185 FNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTS 244
Query: 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN---- 696
F G SV K R DLS++ F + A ++G + EG N
Sbjct: 245 ATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKK 304
Query: 697 -----------MYINYGNEYYSAILTVKGVNME--------MEKVLNIFTTIDLSGNKFQ 737
IN + L +KG NM +EK+ N+ +DLS + +
Sbjct: 305 LVLNANSFDQLCQINAASFPSLRDLYIKG-NMRKLDLGTRCLEKLENL-QKLDLSHSDIE 362
Query: 738 GR--IPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIP 789
+ L L+ LN S+N+ GL + + QLE LD++ + + P
Sbjct: 363 ASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 78/194 (40%), Gaps = 33/194 (17%)
Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPAS-LGNLSQLTYLDLSY 260
L +LQ L LSYN+ L L +D+ + P S NL L L+LS+
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKFT-GQI------------------PCIFANLTQL 301
L+ LQ LRHL+L N F G I C ++ Q
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 302 SF--------LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLN-GTIPSGLFTSPLLES- 351
+F LD S+N L G ++S L L YL+ S N IP L + +S
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL---YLNMASNNIRIIPPHLLPALSQQSI 550
Query: 352 IDLRNNQLTGSISN 365
I+L +N L + SN
Sbjct: 551 INLSHNPLDCTCSN 564
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 59 LSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ 118
L S H + + L L++L +A N F +++ FT NL L+LS
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 119 IPAEISHLSKLVSLDLSGNSQLGLDT 144
P + LS L L++S N+ LDT
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDT 216
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 249 NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLDFS 307
+L L YLD+S+ + + L L L ++ N F +P IF L L+FLD S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 308 NNQLNGPISSSVSRLHSLVTIYLSYN 333
QL ++ + L SL + +S+N
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 97/257 (37%), Gaps = 39/257 (15%)
Query: 280 LDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN--GPISSSVSRLHSLVTIYLSYNSLNG 337
L+L +NK +F LTQL+ L S+N L+ G S S SL + LS+N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I 91
Query: 338 TIPSGLFTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKN 397
T+ S LE +D +++ L E +F L+N
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLK------------------------QMSEFSVFLSLRN 127
Query: 398 XXXXXXXXXXXXXXXXXPVNSSFPYLSMLSLSSCNISE--FPDFLRTQHRLQILDLSDNQ 455
N L +L ++ + E PD L LDLS Q
Sbjct: 128 LIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 456 IRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL-------KGSIP 508
+ P ++ +L LN+SHN ++ P+K L L + SL K +
Sbjct: 187 LEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 509 FLPPSLNFISVSNNKLS 525
P SL F++++ N +
Sbjct: 245 HFPSSLAFLNLTQNDFA 261
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDL--SNNKFTGQIPC 293
G +F G S + L YLDLS+N + S L+QL HLD SN K +
Sbjct: 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS- 120
Query: 294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTS----PLL 349
+F +L L +LD S+ + + L SL + ++ NS +FT L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 350 ESIDLRNNQLTGSISNSISEL 370
+ + QL+ + NS+S L
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSL 201
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 727 TTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786
T +DLS + + P L+SL+ LN SHN L + + L L+ LD S N +
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 787 EIPWQL 792
+L
Sbjct: 238 SKKQEL 243
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGS-IPASLGNLSQLTYLDLSY 260
L NL L +S+ + N S L + + G +F + +P L LT+LDLS
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQL 311
P+ ++L L+ L++S+N F + L L LD+S N +
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 445 RLQILDLSDNQIRG-GIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503
+L+IL +S N+I+ I + +N L +L+LSHN L I P NL++LDL N+
Sbjct: 46 KLRILIISHNRIQYLDISVFKFN---QELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAF 102
Query: 504 KGSIPFLPP-----SLNFISVSNNKL--SGEIPLSFCNMSSIFYV 541
++P L F+ +S L S +P++ N+S + V
Sbjct: 103 -DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 27/179 (15%)
Query: 612 LDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671
LD NN + T G L+EL+ LIL+ N+ + L+ LD+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS- 387
Query: 672 VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDL 731
Y + + S + +N S ILT ++ +DL
Sbjct: 388 -----YDEK------KGDCSWTKSLLSLNMS----SNILTDTIFRCLPPRI----KVLDL 428
Query: 732 SGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPW 790
NK + IP+ V KL +L+ LN + N+L + + LT L+ + L +N PW
Sbjct: 429 HSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN------PW 480
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGT 622
FL R N +P+ S+ + TILN++ N + +++ S L +L + +NRI
Sbjct: 3 FLVDRSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQ 682
+ EL+ L L N+ ++ P L+ LDLS N F + + F N
Sbjct: 61 DISVFKFNQELEYLDLSHNKL-----VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115
Query: 683 AM 684
+
Sbjct: 116 QL 117
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 10/155 (6%)
Query: 191 LQGSIPENIFRLPNLQNLILSYN--KNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLG 248
L ++ EN L L+ LIL N K L+ + L+ +D+ + S G
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV--SYDEKKG 393
Query: 249 NLS---QLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLD 305
+ S L L++S N + I L +++ LDL +NK IP L L L+
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELN 450
Query: 306 FSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP 340
++NQL RL SL I+L N + + P
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN--GPISSSVSRLHSLVTIYLSYNSLN 336
HLD SNN T + +LT+L L NQL I+ +++ SL + +S NS++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 337 GTIPSG--LFTSPLLESIDLRNNQLTGSI 363
G +T LL S+++ +N LT +I
Sbjct: 388 YDEKKGDCSWTKSLL-SLNMSSNILTDTI 415
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 21/194 (10%)
Query: 191 LQGSIPENIFRLPNLQNLI-----LSYNKNLTSVFPKVNWSSPLR--FMDLYGCNFMGSI 243
LQ PEN + L + L+ L Y K F + P+R ++D F+
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE- 432
Query: 244 PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL---RHLDLSNNKFTGQIPCIFANLTQ 300
++ ++ Y D+ + + + L +L+QL HLDLS+N+ +P A L
Sbjct: 433 ----NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRC 487
Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP-SGLFTSPLLESIDLRNNQL 359
L L S+N L V+ L L + L N L + L + P L ++L+ N L
Sbjct: 488 LEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 360 TGS--ISNSISELV 371
I ++E++
Sbjct: 546 CQEEGIQERLAEML 559
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 21/194 (10%)
Query: 191 LQGSIPENIFRLPNLQNLI-----LSYNKNLTSVFPKVNWSSPLR--FMDLYGCNFMGSI 243
LQ PEN + L + L+ L Y K F + P+R ++D F+
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE- 432
Query: 244 PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQL---RHLDLSNNKFTGQIPCIFANLTQ 300
++ ++ Y D+ + + + L +L+QL HLDLS+N+ +P A L
Sbjct: 433 ----NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRC 487
Query: 301 LSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIP-SGLFTSPLLESIDLRNNQL 359
L L S+N L V+ L L + L N L + L + P L ++L+ N L
Sbjct: 488 LEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Query: 360 TGS--ISNSISELV 371
I ++E++
Sbjct: 546 CQEEGIQERLAEML 559
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Query: 205 LQNLILSYNKNLTSVFPKV-NWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF 263
L+ L LS N L V P L + L C P L+ L YL L NN
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLH 323
+T +L L HL L N+ F L L L N + + L
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 324 SLVTIYLSYNSLN 336
L+T+YL N+L+
Sbjct: 201 RLMTLYLFANNLS 213
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 46/273 (16%)
Query: 423 LSMLSLSSCNISEF-PDFLRTQHRLQILDLSDNQ--------------------IRGGIP 461
L+ L L+ C I D ++QHRL L L+ N I+ GI
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 462 --NWIWNVGKDTLNHLNLSHNFLTGIEL---LPWKNLRYLDLRSNSL----KGSIPFLPP 512
++I + TL L L N ++ I+L P + L+ LD ++N++ K + L
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 513 SLNF-ISVSNNKLSGEIPLSFCNMSSIFY-VNLSNNSLNGMIPPCLANS---SLW---FL 564
+ N ++++ N ++G P +F S++F +N +I L NS SLW F
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236
Query: 565 DMRMNNFHGSIPQTFSKGSRLTILNLN-DNQLEGSVPLSLVNC-SFLEVLDVGNNRINGT 622
DM + P F +++ ++N ++ + +C S L+ LD+ +
Sbjct: 237 DMDDEDIS---PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SE 292
Query: 623 FPAWLGALSELQVLILRSNRFHGPITYSVTRFP 655
P+ L LS L+ L+L +N+F S + FP
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 33/194 (17%)
Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF-MGSIPASLGNLSQLTYLDLSY 260
L +LQ+L LSYN+ L+ L +DL + + NL L L+LS+
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKF-------------TGQIPCI------------- 294
+ L L+HL+L N F G++ +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
Query: 295 -FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIY--LSYNSLNGTIPSGLFTSPLLES 351
F +L ++ +D S+N+L SSS+ L L IY L+ N ++ +PS L +
Sbjct: 495 AFTSLKMMNHVDLSHNRLT---SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551
Query: 352 IDLRNNQLTGSISN 365
I+LR N L + SN
Sbjct: 552 INLRQNPLDCTCSN 565
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 120/322 (37%), Gaps = 37/322 (11%)
Query: 227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNK 286
S L+ +DL + + +P+ L LS L L LS N F + SN L HL + N
Sbjct: 278 SGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 287 FTGQIPC-IFANLTQLSFLDFSNNQLNGPISSSVS--RLHSLVTIYLSYNSLNGTIPSGL 343
++ NL L LD S++ + ++ L L ++ LSYN
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 344 FTSPLLESIDLRNNQLTGSISNSISELVXXXXXXXXXXXXXXXVELYMFAELKNXXXXXX 403
P LE +DL +L + S + + +F L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456
Query: 404 XXXXXXXXXXXPVNS--SFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIP 461
NS + L +L LS C++S QH L +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-----QHAFTSLKM---------- 501
Query: 462 NWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLR--YLDLRSNSLKGSIPFLPPSLNFISV 519
+NH++LSHN LT + +L+ YL+L SN + +P L P L+
Sbjct: 502 ----------MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRT 551
Query: 520 SNNKLSGEIPLSFCNMSSIFYV 541
N + + PL C S+I+++
Sbjct: 552 INLR---QNPLD-CTCSNIYFL 569
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 44 GVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFP 103
G C ++ LDLS + S + L +L HLQ LNL++N+ S + F P
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECP 400
Query: 104 NLAHLNLSVSSFS---GQIPAEISHLSKLVSL 132
L L+L+ + Q P + HL K+++L
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 170/405 (41%), Gaps = 77/405 (19%)
Query: 423 LSMLSLSSCNISEF-PDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
L+ L L+ C I+ D ++ H+L L L+ N + + G +L HL L
Sbjct: 56 LTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLN--GPKSLKHLFLIQTG 113
Query: 482 LTGIELLPWKNLRYLD---LRSN---SLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNM 535
++ +E +P NL L+ L SN S+K F +L + NN + +S +M
Sbjct: 114 ISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHY---ISREDM 170
Query: 536 SSI-----FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNL 590
S+ +N + N++ G+ + F +I Q+ + G L++
Sbjct: 171 RSLEQAINLSLNFNGNNVKGI---------------ELGAFDSTIFQSLNFGGTPN-LSV 214
Query: 591 NDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQV--LILRSNRFHGPIT 648
N L+ S SL +F D+ + I+ A L L E+ V L L+ +RF
Sbjct: 215 IFNGLQNSTTQSLWLGTFE---DIDDEDISS---AMLKGLCEMSVESLNLQEHRFSD--I 266
Query: 649 YSVTRFPFPKLRILDLSNNEFTG--------------VLPTRYFQNFQAMMHGNNNSAEG 694
S T F +L+ LDL+ G VL +F + N S
Sbjct: 267 SSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLT- 325
Query: 695 GNMYINYGNEYYSAILTVKGVNME---MEKVLNIFTTIDLSGNKFQGR--IPEVVGKLNS 749
++YI GN VK +++ +EK+ N+ T+DLS N + + L+
Sbjct: 326 -HLYIR-GN--------VKKLHLGVGCLEKLGNL-QTLDLSHNDIEASDCCSLQLKNLSH 374
Query: 750 LKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV---AGEIPWQ 791
L+ LN SHN+ GL + + QLE LDL+ ++ A + P+Q
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 227 SPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNN- 285
+ L+ +DL + G +P+ + L+ L L LS N+F + +N L HL + N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNV 333
Query: 286 -KFTGQIPCIFANLTQLSFLDFSNNQLNGP--ISSSVSRLHSLVTIYLSYNSLNGTIPSG 342
K + C+ L L LD S+N + S + L L T+ LS+N G
Sbjct: 334 KKLHLGVGCL-EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 343 LFTSPLLESIDL 354
P LE +DL
Sbjct: 393 FKECPQLELLDL 404
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 44 GVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFP 103
GV C G++ LDLS + + S L +L HLQ LNL+ N+ S F P
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE-PLGLQSQAFKECP 397
Query: 104 NLAHLNLSVSSF---SGQIPAEISHLSKLVSLDL----SGNSQLGLDTPVLK 148
L L+L+ + + Q P + H ++++L + N L PVL+
Sbjct: 398 QLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLR 449
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 29/192 (15%)
Query: 202 LPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPAS-LGNLSQLTYLDLSY 260
L +LQ L LS+N+ L L +DL + P S NL L L+L+Y
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 261 NNFSGHIPSTLSNLQQLRHLDLSNNKF-------------TGQIPCI------------- 294
L+ L LRHL+L N F G + +
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQ 491
Query: 295 -FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESID 353
F +L ++S +D S+N L S+S L + + L+ NS+N P L +I+
Sbjct: 492 AFHSLGKMSHVDLSHNSLTCDSIDSLSHLKG-IYLNLAANSINIISPRLLPILSQQSTIN 550
Query: 354 LRNNQLTGSISN 365
L +N L + SN
Sbjct: 551 LSHNPLDCTCSN 562
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 30/227 (13%)
Query: 574 SIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSEL 633
+PQ +R LNL +N ++ + + LEVL +G N I L+ L
Sbjct: 68 EVPQGIPSNTR--YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 634 QVLILRSNRF----HGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMH--- 686
L L N G Y KLR L L NN + P+ F ++M
Sbjct: 126 NTLELFDNWLTVIPSGAFEY------LSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDL 178
Query: 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNI--------FTTIDLSGNKFQG 738
G E YI+ G + + +K +N+ M + ++ +++SGN F
Sbjct: 179 GELKKLE----YISEG--AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE 232
Query: 739 RIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
P L+SLK L +++++ + + + L L L+L+ N ++
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309
L L YL+L N +P+ L+ L L L++S N F P F L+ L L N+
Sbjct: 195 LFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLR 355
Q++ ++ L SLV + L++N+L+ ++P LFT PL ++L
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFT-PLRYLVELH 296
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 245 ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFL 304
ASL L+ L L LS+N+ S +L+N LR L L+NNK ++P A+ + +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 305 DFSNNQLNG 313
NN ++
Sbjct: 269 YLHNNNISA 277
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG-- 313
LDL N + NL+ L L L NNK + P FA L +L L S NQL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 314 ---PISSSVSRLH--SLVTIYLS-YNSLNGTIPSGLFTSPLLES 351
P + R+H + + S +N LN I L T+PL S
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 423 LSMLSLSSCNISEFPDFL-RTQHRLQILDLSDNQIRGGIPNW-----IWNVGKDTLNHLN 476
L L LS + E P+ + +T L++ + ++R + N + +G + L
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161
Query: 477 LSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
+ + G+ K L Y+ + ++ LPPSL + + NK++ S ++
Sbjct: 162 IENGAFQGM-----KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 216
Query: 537 SIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596
++ + LS NS++ + LAN+ L L+LN+N+L
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANT-----------------------PHLRELHLNNNKLV 253
Query: 597 GSVPLSLVNCSFLEVLDVGNNRING 621
VP L + +++V+ + NN I+
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 30/222 (13%)
Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
+L+L +N++ N L L + NN+I+ P L +L+ L L N+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-- 112
Query: 646 PITYSVTRFP--FPK-LRILDLSNNEFTGVLPTRYFQNFQAMM-----------HGNNNS 691
P PK L+ L + NE T V + F M+ G N
Sbjct: 113 ------KELPEKMPKTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751
A G ++Y + I T+ + + T + L GNK + LN+L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIP------QGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLT 793
L S N ++ + SL N L L L++NK+ ++P L
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 202 LPNLQNLILSYN--KNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS 259
L L+ L LS N K L PK L+ + ++ + L+Q+ ++L
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKT-----LQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 260 YNNF--SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS 317
N SG +++L ++ +++ T + +LT+L N++ ++
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL---DGNKITKVDAA 210
Query: 318 SVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
S+ L++L + LS+NS++ L +P L + L NN+L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 245 ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFL 304
ASL L+ L L LS+N+ S +L+N LR L L+NNK ++P A+ + +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 305 DFSNNQLNG 313
NN ++
Sbjct: 269 YLHNNNISA 277
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 256 LDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNG-- 313
LDL N + NL+ L L L NNK + P FA L +L L S NQL
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 314 ---PISSSVSRLH--SLVTIYLS-YNSLNGTIPSGLFTSPLLES 351
P + R+H + + S +N LN I L T+PL S
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 423 LSMLSLSSCNISEFPDFL-RTQHRLQILDLSDNQIRGGIPNW-----IWNVGKDTLNHLN 476
L L LS + E P+ + +T L++ + ++R + N + +G + L
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161
Query: 477 LSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
+ + G+ K L Y+ + ++ LPPSL + + NK++ S ++
Sbjct: 162 IENGAFQGM-----KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLN 216
Query: 537 SIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLE 596
++ + LS NS++ + LAN+ L L+LN+N+L
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANT-----------------------PHLRELHLNNNKLV 253
Query: 597 GSVPLSLVNCSFLEVLDVGNNRING 621
VP L + +++V+ + NN I+
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 202 LPNLQNLILSYN--KNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS 259
L L+ L LS N K L PK L+ + ++ + L+Q+ ++L
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKT-----LQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 260 YNNF--SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS 317
N SG +++L ++ +++ T + +LT+L N++ ++
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL---DGNKITKVDAA 210
Query: 318 SVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLT 360
S+ L++L + LS+NS++ L +P L + L NN+L
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 86/222 (38%), Gaps = 30/222 (13%)
Query: 586 TILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHG 645
+L+L +N++ N L L + NN+I+ P L +L+ L L N+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-- 112
Query: 646 PITYSVTRFP--FPK-LRILDLSNNEFTGVLPTRYFQNFQAMM-----------HGNNNS 691
P PK L+ L + NE T V + F M+ G N
Sbjct: 113 ------KELPEKMPKTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 692 AEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLK 751
A G ++Y + I T+ + + T + L GNK + LN+L
Sbjct: 166 AFQGMKKLSYIRIADTNITTIP------QGLPPSLTELHLDGNKITKVDAASLKGLNNLA 219
Query: 752 GLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLT 793
L S N ++ + SL N L L L++NK+ ++P L
Sbjct: 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 448 ILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN---FLTGIELLPWKNLRYLDLRSNSLK 504
+LDLS N + W L+ L LSHN F++ +P NLRYLDL SN L
Sbjct: 43 LLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 505 GSIPFLPPSLNFISV---SNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548
FL L + V NN + +F +M+ + + LS N +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 37/236 (15%)
Query: 515 NFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGM----IPPCLANSSLWFLDMRMNN 570
N +S S +L +P S + +++ ++LS+N+L+ + P L N L N
Sbjct: 21 NILSCSKQQLPN-VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGAL 630
F S + F L L+L+ N L + LEVL + NN I +
Sbjct: 78 FISS--EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 631 SELQVLILRSNRFHGPITYSVTRFP---------FPKLRILDLSNNEFTGVLPTRYFQNF 681
++LQ L L N+ ++RFP PKL +LDLS+N+ LP Q
Sbjct: 136 AQLQKLYLSQNQ--------ISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKL 186
Query: 682 QAM----MHGNNNSAE-GGNMYINYGNEYYSAILTVKGVN-----MEMEKVLNIFT 727
A ++ +NN E +Y + + Y + +V M +K+ NIF+
Sbjct: 187 PAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFS 242
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 32/149 (21%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFS----GHIPSTLSNLQQL------------------ 277
+ ++P SL + + L LDLS+NN S P+ L+NL L
Sbjct: 30 LPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87
Query: 278 ---RHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNS 334
R+LDLS+N +F++L L L NN + ++ + L +YLS N
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 335 LNGTIPSGLFTS----PLLESIDLRNNQL 359
+ P L P L +DL +N+L
Sbjct: 148 I-SRFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 245 ASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCI---------- 294
A L NL+++T L+LS N S ++ LQ ++ LDL++ + T P
Sbjct: 79 APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136
Query: 295 ----------FANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLF 344
A LT L +L N Q++ + ++ L L T+ N ++ P L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDISP--LA 192
Query: 345 TSPLLESIDLRNNQLT 360
+ P L + L+NNQ++
Sbjct: 193 SLPNLIEVHLKNNQIS 208
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 107/272 (39%), Gaps = 44/272 (16%)
Query: 418 SSFPYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLN 476
SF + +L+L+ I E + H +Q L + N IR P+ NV T+ L
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV--LV 129
Query: 477 LSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
L N L+ SL I P L +S+SNN L +F +
Sbjct: 130 LERNDLS------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171
Query: 537 SIFYVNLSNNSLN----GMIPPCL-ANSSLWFLDM--------RMNNFHGSIPQTFSKGS 583
S+ + LS+N L +IP AN S L ++ H SI +G
Sbjct: 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI--NVVRGP 229
Query: 584 ---RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640
LTIL L N L + L+N L +D+ N + + L+ L + +
Sbjct: 230 VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGV 672
NR + ++ P P L++LDLS+N V
Sbjct: 288 NRL---VALNLYGQPIPTLKVLDLSHNHLLHV 316
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 37/193 (19%)
Query: 205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYLDLSYNNF 263
+Q L + +N + + P V + PL + + N + S+P + N +LT L +S NN
Sbjct: 101 IQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFT----GQIPCIF-ANLT-----------QLSFLDFS 307
T L++L LS+N+ T IP +F AN++ + LD S
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219
Query: 308 NNQLN---GPISSSVSRLH----------------SLVTIYLSYNSLNGTIPSGLFTSPL 348
+N +N GP++ ++ L LV + LSYN L +
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 349 LESIDLRNNQLTG 361
LE + + NN+L
Sbjct: 280 LERLYISNNRLVA 292
>pdb|2BBR|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 195
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 207 NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH 266
+ + Y K + V +++ SS LR + L+ CN S+ +L S+ L L+ N
Sbjct: 91 SFLTRYRKLMVCVGEELD-SSELRALRLFACNLNPSLSTALSESSRFVELVLALENVGLV 149
Query: 267 IPSTLS----NLQQLRHLDL 282
PS++S L+ LR LDL
Sbjct: 150 SPSSVSVLADMLRTLRRLDL 169
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 107/272 (39%), Gaps = 44/272 (16%)
Query: 418 SSFPYLSMLSLSSCNISEFPDF-LRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLN 476
SF + +L+L+ I E + H +Q L + N IR P+ NV T+ L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV--LV 123
Query: 477 LSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMS 536
L N L+ SL I P L +S+SNN L +F +
Sbjct: 124 LERNDLS------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165
Query: 537 SIFYVNLSNNSLN----GMIPPCL-ANSSLWFLDM--------RMNNFHGSIPQTFSKGS 583
S+ + LS+N L +IP AN S L ++ H SI +G
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI--NVVRGP 223
Query: 584 ---RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRS 640
LTIL L N L + L+N L +D+ N + + L+ L + +
Sbjct: 224 VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 641 NRFHGPITYSVTRFPFPKLRILDLSNNEFTGV 672
NR + ++ P P L++LDLS+N V
Sbjct: 282 NRL---VALNLYGQPIPTLKVLDLSHNHLLHV 310
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 37/193 (19%)
Query: 205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASL-GNLSQLTYLDLSYNNF 263
+Q L + +N + + P V + PL + + N + S+P + N +LT L +S NN
Sbjct: 95 IQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 264 SGHIPSTLSNLQQLRHLDLSNNKFT----GQIPCIF-ANLT-----------QLSFLDFS 307
T L++L LS+N+ T IP +F AN++ + LD S
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213
Query: 308 NNQLN---GPISSSVSRLH----------------SLVTIYLSYNSLNGTIPSGLFTSPL 348
+N +N GP++ ++ L LV + LSYN L +
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273
Query: 349 LESIDLRNNQLTG 361
LE + + NN+L
Sbjct: 274 LERLYISNNRLVA 286
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 51/245 (20%)
Query: 584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRF 643
++ +LNLND Q+E + ++ L +G N I P + L VL+L N
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
Query: 644 HGPITYSVTRFPF---PKLRILDLSNNEFTGV-----LPTRYFQNFQ------------- 682
S+ R F PKL L +SNN + T QN Q
Sbjct: 130 S-----SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184
Query: 683 --AMMHGNNNSAEGGNMYINYGNEYYSA----ILTVKG-VNMEMEKVLNI---------- 725
++ H N + + I E A I V+G VN+E+ +L +
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL-TILKLQHNNLTDTAW 243
Query: 726 ------FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDL 779
+DLS N+ + + K+ L+ L S+N+L L Y + + L+ LDL
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDL 302
Query: 780 SSNKV 784
S N +
Sbjct: 303 SHNHL 307
>pdb|2F1S|A Chain A, Crystal Structure Of A Viral Flip Mc159
Length = 186
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 226 SSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS----NLQQLRHLD 281
SS LR + L+ CN S+ +L S+ L L+ N PS++S L+ LR LD
Sbjct: 112 SSELRALRLFACNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSVLADMLRTLRRLD 171
Query: 282 L 282
L
Sbjct: 172 L 172
>pdb|2BBZ|A Chain A, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|B Chain B, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|C Chain C, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
pdb|2BBZ|D Chain D, Crystal Structure Of Mc159 Reveals Molecular Mechanism Of
Disc Assembly And Vflip Inhibition
Length = 249
Score = 32.7 bits (73), Expect = 0.96, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 226 SSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLS----NLQQLRHLD 281
SS LR + L+ CN S+ +L S+ L L+ N PS++S L+ LR LD
Sbjct: 109 SSELRALRLFACNLNPSLSTALSESSRFVELVLALENVGLVSPSSVSVLADMLRTLRRLD 168
Query: 282 L 282
L
Sbjct: 169 L 169
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 4/159 (2%)
Query: 512 PSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLAN-SSLWFLDMRMNN 570
P L I+ SNNK++ +F S + + L++N L + SL L +R N
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 571 FHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRIN-GTFPAWLGA 629
+F S + +L+L DNQ+ P + L L++ N N + AWLG
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGE 176
Query: 630 LSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNE 668
+ ++ + R P Y + P + I D + ++
Sbjct: 177 WLRKKRIVTGNPRCQKP--YFLKEIPIQDVAIQDFTCDD 213
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 241 GSIPASLGNLSQLTYLDLS---YNNFSGHIPSTLSNLQQLRHLDLSNNKFTG-QIPCIFA 296
GS+ + T +D S N HIP Q L L+NN+FT + IF
Sbjct: 1 GSLACPEKCRCEGTTVDCSNQKLNKIPEHIP------QYTAELRLNNNEFTVLEATGIFK 54
Query: 297 NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRN 356
L QL ++FSNN++ + + I L+ N L L+++ LR+
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114
Query: 357 NQLT 360
N++T
Sbjct: 115 NRIT 118
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 541 VNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQT---FSKGSRLTILNLNDNQLEG 597
V+ SN LN IP + + ++R+NN ++ + F K +L +N ++N++
Sbjct: 16 VDCSNQKLN-KIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71
Query: 598 SVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFP 657
+ S + + + +NR+ L L+ L+LRSNR S
Sbjct: 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF--IGLS 129
Query: 658 KLRILDLSNNEFTGVLPTRY 677
+R+L L +N+ T V P +
Sbjct: 130 SVRLLSLYDNQITTVAPGAF 149
>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
Length = 441
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 492 NLRYLDLRSNSLKGSIPFLPPS-LNFISVSNNKLSGEIPLSFC 533
NLR+ + LK IP+LP + + +IS SN KL E +SF
Sbjct: 74 NLRFTEEEIEYLKQEIPYLPSAYIKYISSSNYKLHPEEQISFT 116
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 199 IFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDL 258
I LP L+ L L L + P +PL+ + L C+ + ++P + L+QL LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 259 SYNNFSGHIPSTLSNL 274
+PS ++ L
Sbjct: 285 RGCVNLSRLPSLIAQL 300
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 194 SIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN---- 249
+P+ + L+ L L+ N L ++ + + LR + + C + +P L +
Sbjct: 118 ELPDTXQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 250 -----LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFL 304
L L L L + +P++++NLQ L+ L + N+ + P I +L +L L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIH-HLPKLEEL 234
Query: 305 DF 306
D
Sbjct: 235 DL 236
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 63/200 (31%)
Query: 491 KNLRYLDLRSN----------SLKGSIPFLPPSLNFISVSNNKL-----SGEIPLSFCNM 535
K+L +LDL N + KG+ P SL + +S N L +GEI L+ N+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWP----SLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Query: 536 SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMR---MNNFHGSIPQTFSKGSRLTILNLND 592
+S+ ++S N+ + M C + FL++ + IPQT
Sbjct: 390 TSL---DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT-------------- 432
Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652
LEVLDV NN ++ +F +L L EL + N+ S+
Sbjct: 433 ----------------LEVLDVSNNNLD-SFSLFLPRLQELYI---SRNKLKTLPDASL- 471
Query: 653 RFPFPKLRILDLSNNEFTGV 672
FP L ++ +S N+ V
Sbjct: 472 ---FPVLLVMKISRNQLKSV 488
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 145/342 (42%), Gaps = 44/342 (12%)
Query: 471 TLNHLNLSHNFLTGI---ELLPWKNLRYLDLRS---NSLKGSIPFLPPSLNFISVSNNKL 524
+ L+LS N +T I +L NL+ L L+S N+++G + SL + +S+N L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSR 584
S F +SS+ Y+NL N + L + +R+ N +TFS+ R
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV-----ETFSEIRR 141
Query: 585 LTILNLND-NQLEGSVPLSLVNC---SFLEVLDVGNNRINGTFPAWL-----GALSELQV 635
+ L N+LE LSL N S + D+ + ++ + A+L LS ++
Sbjct: 142 IDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 636 LILRSN---RFH-GPITYSVTRFPFPKLR-----ILDLSNNEFTGVLPTRYFQNFQAMMH 686
L LR RF P+ P KL + D S NE +L RY + +
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL--RYILEL-SEVE 257
Query: 687 GNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGK 746
++ + G + ++ S + V+ V + + + DLS V
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST---------VYSL 308
Query: 747 LNSLKGLNFSHNKLTGLIPYSL-ENLTQLESLDLSSNKVAGE 787
L +K + ++K+ L+P S ++L LE LDLS N + E
Sbjct: 309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 63/200 (31%)
Query: 491 KNLRYLDLRSN----------SLKGSIPFLPPSLNFISVSNNKL-----SGEIPLSFCNM 535
K+L +LDL N + KG+ P SL + +S N L +GEI L+ N+
Sbjct: 360 KSLEFLDLSENLMVEEYLKNSACKGAWP----SLQTLVLSQNHLRSMQKTGEILLTLKNL 415
Query: 536 SSIFYVNLSNNSLNGMIPPCLANSSLWFLDMR---MNNFHGSIPQTFSKGSRLTILNLND 592
+S+ ++S N+ + M C + FL++ + IPQT
Sbjct: 416 TSL---DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT-------------- 458
Query: 593 NQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652
LEVLDV NN ++ +F +L L EL + N+ S+
Sbjct: 459 ----------------LEVLDVSNNNLD-SFSLFLPRLQELYI---SRNKLKTLPDASL- 497
Query: 653 RFPFPKLRILDLSNNEFTGV 672
FP L ++ +++N+ V
Sbjct: 498 ---FPVLLVMKIASNQLKSV 514
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 147/346 (42%), Gaps = 52/346 (15%)
Query: 471 TLNHLNLSHNFLTGI---ELLPWKNLRYLDLRS---NSLKGSIPFLPPSLNFISVSNNKL 524
+ L+LS N +T I +L NL+ L L+S N+++G + SL + +S+N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 525 SGEIPLSFCNMSSIFYVNLSNNSLNGM----IPPCLANSSLWFLDMRMNNFHGSIPQTFS 580
S F +SS+ Y+NL N + + P L N +R+ N +TFS
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN----LQTLRIGNV-----ETFS 163
Query: 581 KGSRLTILNLND-NQLEGSVPLSLVNC---SFLEVLDVGNNRINGTFPAWL-----GALS 631
+ R+ L N+LE LSL N S + D+ + ++ + A+L LS
Sbjct: 164 EIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 222
Query: 632 ELQVLILRSN---RFH-GPITYSVTRFPFPKLR-----ILDLSNNEFTGVLPTRYFQNFQ 682
++ L LR RF P+ P KL + D S NE +L RY
Sbjct: 223 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL--RYILEL- 279
Query: 683 AMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPE 742
+ + ++ + G + ++ S + V+ V + + + DLS
Sbjct: 280 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST--------- 330
Query: 743 VVGKLNSLKGLNFSHNKLTGLIPYSL-ENLTQLESLDLSSNKVAGE 787
V L +K + ++K+ L+P S ++L LE LDLS N + E
Sbjct: 331 VYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEE 375
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 24/115 (20%)
Query: 206 QNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPA-SLGNLSQLTYLDLSYNNFS 264
QN +L+Y + +++ S + +L C+ I + +QLT LD S+N
Sbjct: 125 QNPLLTYLNCARNTLTEIDVSHNTQLTEL-DCHLNKKITKLDVTPQTQLTTLDCSFN--- 180
Query: 265 GHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT--------QLSFLDFSNNQL 311
++ LD+S NK ++ C N+T QL+FLD S+N+L
Sbjct: 181 -----------KITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL 224
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 244 PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
P + +L +DLS N S P L+ L L L NK T +F L L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
L + N++N + LH+L + L N L TI G F SPL
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF-SPL 151
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
T I L N + P L+ ++ S+N+++ L P + + L L SL L NK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 786 GEIPWQL 792
E+P L
Sbjct: 94 -ELPKSL 99
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
+ IP +L +T + L N P S ++LR +DLSNN+ + P F L
Sbjct: 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 300 QLSFLDFSNNQL 311
L+ L N++
Sbjct: 81 SLNSLVLYGNKI 92
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 244 PASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSF 303
P + +L +DLS N S P L+ L L L NK T +F L L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 304 LDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348
L + N++N + LH+L + L N L TI G F SPL
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTF-SPL 151
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785
T I L N + P L+ ++ S+N+++ L P + + L L SL L NK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 786 GEIPWQL 792
E+P L
Sbjct: 94 -ELPKSL 99
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLT 299
+ IP +L +T + L N P S ++LR +DLSNN+ + P F L
Sbjct: 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 300 QLSFLDFSNNQL 311
L+ L N++
Sbjct: 81 SLNSLVLYGNKI 92
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 34/196 (17%)
Query: 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNF 481
+++ L + N++ P L+ L++S NQ+ +P V L L++ N
Sbjct: 62 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQL-TSLP-----VLPPGLLELSIFSNP 112
Query: 482 LTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSG--EIPLSFCNM---- 535
LT + LP L L + N L S+P LPP L +SVS+N+L+ +P C +
Sbjct: 113 LTHLPALP-SGLCKLWIFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN 170
Query: 536 ----------SSIFYVNLSNNSLNGMIPPCLANS--SLWFLDMRMNNFHG---SIPQTFS 580
S + +++S+N L + P L + LW + R+ + + +
Sbjct: 171 NQLTSLPMLPSGLQELSVSDNQLASL--PTLPSELYKLWAYNNRLTSLPALPSGLKELIV 228
Query: 581 KGSRLTILNLNDNQLE 596
G+RLT L + ++L+
Sbjct: 229 SGNRLTSLPVLPSELK 244
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 27/123 (21%)
Query: 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKG 505
LQ L +SDNQ+ +P L L +N LT + LP L+ L + N L
Sbjct: 183 LQELSVSDNQL-ASLPTL-----PSELYKLWAYNNRLTSLPALP-SGLKELIVSGNRLT- 234
Query: 506 SIPFLPPSLNFISVSNNKLSG-------------------EIPLSFCNMSSIFYVNLSNN 546
S+P LP L + VS N+L+ +P S ++SS VNL N
Sbjct: 235 SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294
Query: 547 SLN 549
L+
Sbjct: 295 PLS 297
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 32/201 (15%)
Query: 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFL 482
L L +S ++ E P L + L L + DN+IR +P +++ G +N + + N L
Sbjct: 104 LQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIRK-VPKGVFS-GLRNMNCIEMGGNPL 159
Query: 483 --TGIELLPWKNLR--YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSI 538
+G E + L+ YL + L G LP +LN + + +NK+ S +
Sbjct: 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKL 219
Query: 539 FYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGS 598
+ + L +N + + N SL FL L L+L++N+L
Sbjct: 220 YRLGLGHNQIR-----MIENGSLSFL------------------PTLRELHLDNNKL-SR 255
Query: 599 VPLSLVNCSFLEVLDVGNNRI 619
VP L + L+V+ + N I
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNI 276
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 567 RMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAW 626
R+ N +G IP + L+ L L++N+L + SL++ LE+L + NN++
Sbjct: 96 RLKNLNG-IP-----SACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI--VM 145
Query: 627 LGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSN----NEFTGVLPTRYFQN 680
LG LS+L+VL L N T +TR K+ +DL+ NE P Y N
Sbjct: 146 LGFLSKLEVLDLHGNEITN--TGGLTR--LKKVNWIDLTGQKCVNEPVKYQPELYITN 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,163,742
Number of Sequences: 62578
Number of extensions: 1035038
Number of successful extensions: 3351
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1964
Number of HSP's gapped (non-prelim): 842
length of query: 920
length of database: 14,973,337
effective HSP length: 108
effective length of query: 812
effective length of database: 8,214,913
effective search space: 6670509356
effective search space used: 6670509356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)