Query 048289
Match_columns 920
No_of_seqs 804 out of 5986
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-69 4.7E-74 676.5 43.2 578 1-836 33-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.1E-55 1.3E-59 546.2 38.6 495 157-816 71-567 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.8E-36 1.5E-40 314.0 8.7 362 253-638 80-446 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 5E-39 1.1E-43 323.6 -17.3 483 54-644 47-541 (565)
5 KOG0472 Leucine-rich repeat pr 100.0 2.1E-38 4.7E-43 319.1 -15.8 493 180-809 46-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 1.1E-34 2.3E-39 305.0 5.4 374 230-628 81-465 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.8E-35 6.1E-40 326.2 -4.6 480 184-807 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.3E-34 7.2E-39 317.7 -5.8 450 180-684 46-502 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6.7E-31 1.5E-35 277.8 -4.0 365 77-455 6-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.4E-30 7.3E-35 272.6 -0.5 362 226-620 6-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 4E-25 8.7E-30 223.6 -1.3 131 276-407 68-199 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.7E-21 5.9E-26 242.3 28.5 367 51-480 531-903 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 237.2 25.3 346 245-642 552-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 2.7E-21 5.9E-26 223.8 17.2 261 446-814 203-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 6.4E-21 1.4E-25 220.8 16.9 192 424-644 204-395 (788)
16 KOG4237 Extracellular matrix p 99.8 1.1E-21 2.3E-26 199.0 -1.2 298 495-808 50-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.7E-19 3.8E-24 210.6 14.3 206 422-675 179-384 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.7E-24 211.8 11.2 78 725-809 347-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.4E-18 1.4E-22 184.5 3.2 91 82-172 2-98 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.5E-18 1.8E-22 183.6 3.1 133 57-192 3-150 (319)
21 KOG0617 Ras suppressor protein 99.6 7.3E-17 1.6E-21 145.2 -3.0 180 583-813 33-216 (264)
22 PLN03150 hypothetical protein; 99.6 8.7E-15 1.9E-19 171.3 10.0 118 725-842 419-538 (623)
23 KOG0617 Ras suppressor protein 99.5 7.4E-17 1.6E-21 145.2 -7.2 151 52-213 33-183 (264)
24 PLN03150 hypothetical protein; 99.3 3.4E-12 7.4E-17 149.6 11.0 104 31-138 390-501 (623)
25 KOG1909 Ran GTPase-activating 99.2 2.1E-12 4.6E-17 130.5 0.3 239 77-335 29-310 (382)
26 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.5E-16 132.5 -3.3 191 538-807 77-271 (722)
27 COG4886 Leucine-rich repeat (L 99.0 3.5E-10 7.6E-15 127.1 8.4 199 563-815 97-296 (394)
28 KOG3207 Beta-tubulin folding c 99.0 6.2E-11 1.3E-15 123.3 1.0 86 371-456 246-338 (505)
29 KOG0532 Leucine-rich repeat (L 99.0 6E-11 1.3E-15 127.1 -0.8 194 423-668 77-271 (722)
30 COG4886 Leucine-rich repeat (L 99.0 7.7E-10 1.7E-14 124.4 8.0 197 82-292 97-294 (394)
31 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.7E-15 121.1 0.1 211 101-314 119-341 (505)
32 KOG1909 Ran GTPase-activating 98.9 1.6E-10 3.4E-15 117.2 -1.0 40 174-213 87-130 (382)
33 KOG4658 Apoptotic ATPase [Sign 98.9 1.2E-09 2.7E-14 130.6 5.8 127 52-189 523-652 (889)
34 KOG1259 Nischarin, modulator o 98.9 7.6E-10 1.6E-14 109.3 2.3 133 248-386 281-414 (490)
35 PF14580 LRR_9: Leucine-rich r 98.9 4.1E-09 8.9E-14 100.9 6.9 110 296-409 16-126 (175)
36 KOG1259 Nischarin, modulator o 98.9 6.9E-10 1.5E-14 109.6 1.3 137 271-438 280-416 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 3E-14 130.1 4.0 250 52-312 545-807 (889)
38 PF14580 LRR_9: Leucine-rich r 98.8 5.2E-09 1.1E-13 100.1 5.1 111 222-336 14-126 (175)
39 PF13855 LRR_8: Leucine rich r 98.8 3.6E-09 7.8E-14 83.0 2.4 60 749-808 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 6.8E-09 1.5E-13 81.5 2.1 61 724-784 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.6 4.9E-09 1.1E-13 117.9 -0.3 85 726-813 234-322 (414)
42 KOG0531 Protein phosphatase 1, 98.6 5.3E-09 1.1E-13 117.6 -0.1 248 393-674 69-322 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 3.2E-10 7E-15 112.0 -8.8 135 78-214 185-324 (419)
44 KOG2120 SCF ubiquitin ligase, 98.5 5.9E-09 1.3E-13 103.2 -4.5 85 127-214 185-271 (419)
45 PF08263 LRRNT_2: Leucine rich 98.2 5.1E-07 1.1E-11 64.6 1.1 35 1-48 7-43 (43)
46 KOG4579 Leucine-rich repeat (L 98.1 2.2E-07 4.9E-12 81.6 -2.1 87 726-815 55-141 (177)
47 KOG4341 F-box protein containi 98.1 1.6E-07 3.4E-12 97.9 -4.0 277 128-406 139-436 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.1 6.4E-07 1.4E-11 87.9 0.1 91 77-167 29-132 (388)
49 KOG1859 Leucine-rich repeat pr 98.1 2.4E-07 5.2E-12 102.6 -3.5 179 222-410 104-293 (1096)
50 KOG1859 Leucine-rich repeat pr 97.9 3.8E-07 8.1E-12 101.1 -5.4 200 227-437 84-295 (1096)
51 KOG4341 F-box protein containi 97.9 2.2E-07 4.7E-12 96.9 -7.1 278 79-358 139-437 (483)
52 COG5238 RNA1 Ran GTPase-activa 97.9 2.6E-06 5.7E-11 83.7 0.7 38 100-137 27-68 (388)
53 KOG2982 Uncharacterized conser 97.9 5.9E-06 1.3E-10 82.4 2.4 65 394-458 197-263 (418)
54 KOG2982 Uncharacterized conser 97.9 4.6E-06 1E-10 83.1 1.4 108 275-382 45-157 (418)
55 KOG4579 Leucine-rich repeat (L 97.8 2.1E-06 4.5E-11 75.7 -1.4 61 749-810 54-114 (177)
56 PRK15386 type III secretion pr 97.8 6.1E-05 1.3E-09 81.2 8.2 77 579-669 48-124 (426)
57 PF12799 LRR_4: Leucine Rich r 97.7 4.4E-05 9.6E-10 54.6 3.6 36 725-761 2-37 (44)
58 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6E-10 55.6 2.2 36 749-785 2-37 (44)
59 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 77.6 9.0 54 394-454 50-104 (426)
60 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.7E-09 68.4 5.3 104 302-409 22-126 (233)
61 KOG1644 U2-associated snRNP A' 97.3 0.00032 6.9E-09 66.7 5.6 83 300-384 43-126 (233)
62 KOG3665 ZYG-1-like serine/thre 97.3 9.8E-05 2.1E-09 86.8 2.6 150 127-282 122-282 (699)
63 KOG3665 ZYG-1-like serine/thre 97.3 0.00017 3.6E-09 84.9 4.4 137 154-292 121-267 (699)
64 PF13306 LRR_5: Leucine rich r 96.8 0.0028 6.1E-08 58.3 6.9 82 247-331 8-89 (129)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0036 7.8E-08 57.6 6.8 123 269-398 6-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.0 0.0045 9.8E-08 61.8 3.0 56 396-451 91-150 (260)
67 KOG2123 Uncharacterized conser 96.0 0.00046 1E-08 68.6 -4.0 85 322-410 18-102 (388)
68 KOG1947 Leucine rich repeat pr 95.8 0.0023 5.1E-08 74.1 -0.1 110 202-311 187-307 (482)
69 KOG1947 Leucine rich repeat pr 95.8 0.0017 3.6E-08 75.4 -1.4 110 178-287 187-307 (482)
70 KOG2739 Leucine-rich acidic nu 95.6 0.0094 2E-07 59.6 3.1 66 605-671 63-130 (260)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0037 7.9E-08 37.1 0.1 12 774-785 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.008 1.7E-07 35.7 0.7 19 750-769 2-20 (22)
73 KOG2123 Uncharacterized conser 95.0 0.0036 7.7E-08 62.5 -1.8 67 393-462 38-106 (388)
74 KOG4308 LRR-containing protein 92.0 0.0024 5.1E-08 72.1 -10.1 60 277-336 235-303 (478)
75 KOG4308 LRR-containing protein 91.6 0.002 4.3E-08 72.7 -11.4 66 248-313 229-304 (478)
76 KOG0473 Leucine-rich repeat pr 89.2 0.028 6E-07 54.9 -4.1 83 724-809 42-124 (326)
77 PF13504 LRR_7: Leucine rich r 88.6 0.27 5.8E-06 27.0 1.2 15 422-436 2-16 (17)
78 KOG0473 Leucine-rich repeat pr 88.4 0.017 3.7E-07 56.3 -6.1 82 52-139 42-123 (326)
79 smart00369 LRR_TYP Leucine-ric 85.5 0.45 9.7E-06 29.4 1.1 13 773-785 3-15 (26)
80 smart00370 LRR Leucine-rich re 85.5 0.45 9.7E-06 29.4 1.1 13 773-785 3-15 (26)
81 smart00370 LRR Leucine-rich re 84.0 0.73 1.6E-05 28.5 1.6 22 747-768 1-22 (26)
82 smart00369 LRR_TYP Leucine-ric 84.0 0.73 1.6E-05 28.5 1.6 22 747-768 1-22 (26)
83 KOG4242 Predicted myosin-I-bin 83.6 6.8 0.00015 43.0 9.6 65 441-509 162-232 (553)
84 KOG3864 Uncharacterized conser 79.9 0.47 1E-05 45.8 -0.5 35 104-138 102-136 (221)
85 PF13516 LRR_6: Leucine Rich r 79.5 0.38 8.1E-06 29.1 -0.9 11 750-760 4-14 (24)
86 KOG3864 Uncharacterized conser 77.9 0.65 1.4E-05 44.9 -0.2 83 347-453 101-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 68.5 2.8 6E-05 26.0 1.0 14 772-785 2-15 (26)
88 smart00368 LRR_RI Leucine rich 56.3 7.1 0.00015 24.6 1.3 12 128-139 3-14 (28)
89 smart00364 LRR_BAC Leucine-ric 53.6 8.4 0.00018 23.9 1.2 18 421-438 2-19 (26)
90 KOG4242 Predicted myosin-I-bin 52.4 32 0.00069 38.1 6.1 66 250-317 164-232 (553)
91 KOG3763 mRNA export factor TAP 39.4 14 0.00031 41.6 1.2 36 419-454 216-254 (585)
92 smart00367 LRR_CC Leucine-rich 29.4 40 0.00086 20.6 1.6 11 203-213 2-12 (26)
93 PTZ00382 Variant-specific surf 25.8 35 0.00077 29.2 1.2 20 866-885 68-87 (96)
94 TIGR00864 PCC polycystin catio 23.1 48 0.001 45.3 2.1 33 754-786 1-33 (2740)
95 KOG3763 mRNA export factor TAP 23.0 44 0.00095 37.9 1.5 83 581-663 216-307 (585)
96 TIGR00864 PCC polycystin catio 20.8 43 0.00094 45.7 1.1 32 730-761 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-69 Score=676.52 Aligned_cols=578 Identities=36% Similarity=0.611 Sum_probs=397.8
Q ss_pred CcccccccCccCCCCCCCCCcccCCCCcccCCCCCCCCCccccceEecCCCCcEEEEECCCCCCcccCCCCCCccCCCCC
Q 048289 1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEEKDCCSWDGVTCDMMTGHVTGLDLSCSRLHGSIPSDSSLFSLPHL 80 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L 80 (920)
||++||+.+.++.+ .+++|+..++||.|+||+|+. .++|+.|+|+++.+.|.++. .+..+++|
T Consensus 33 ~l~~~~~~~~~~~~--------------~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L 95 (968)
T PLN00113 33 LLLSFKSSINDPLK--------------YLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYI 95 (968)
T ss_pred HHHHHHHhCCCCcc--------------cCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCC
Confidence 68899999876543 689998888999999999985 47999999999999988776 78888888
Q ss_pred CEEECCCCCCCCCCCCCcC-CCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCE
Q 048289 81 QILNLAFNDFNYSYISPGF-TRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQE 159 (920)
Q Consensus 81 ~~L~Ls~~~~~~~~i~~~~-~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~ 159 (920)
++|+|++|.+.+. +|..+ ..+++|++|+|++|.+++.+|. +.+++|++|++++|.
T Consensus 96 ~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--------------------- 151 (968)
T PLN00113 96 QTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--------------------- 151 (968)
T ss_pred CEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc---------------------
Confidence 8888888888765 66554 4788888888888888776664 345566666666553
Q ss_pred EEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcC
Q 048289 160 LVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNF 239 (920)
Q Consensus 160 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 239 (920)
+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++| .+
T Consensus 152 -------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n------------------------~l 200 (968)
T PLN00113 152 -------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN------------------------QL 200 (968)
T ss_pred -------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC------------------------CC
Confidence 33345555556666666666666655555555555555555555544 23
Q ss_pred cccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccc
Q 048289 240 MGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSV 319 (920)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 319 (920)
.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555544444444
Q ss_pred cCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCc
Q 048289 320 SRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLL 399 (920)
Q Consensus 320 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 399 (920)
..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 281 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~----------------- 343 (968)
T PLN00113 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK----------------- 343 (968)
T ss_pred hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC-----------------
Confidence 444444444444444444444444444444444444444443333333333333333333332
Q ss_pred eEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCC
Q 048289 400 GLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSH 479 (920)
Q Consensus 400 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 479 (920)
+.+.+|..+. .+
T Consensus 344 --------------------------------------------------------l~~~~p~~l~--~~---------- 355 (968)
T PLN00113 344 --------------------------------------------------------FSGEIPKNLG--KH---------- 355 (968)
T ss_pred --------------------------------------------------------CcCcCChHHh--CC----------
Confidence 2222222221 11
Q ss_pred CcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCccccccc
Q 048289 480 NFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANS 559 (920)
Q Consensus 480 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 559 (920)
++|+.|++++|++++.+|..++.+++|+.|++++|++
T Consensus 356 --------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l----------- 392 (968)
T PLN00113 356 --------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL----------- 392 (968)
T ss_pred --------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe-----------
Confidence 1233333444444444455555555555555555554
Q ss_pred ccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEcc
Q 048289 560 SLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILR 639 (920)
Q Consensus 560 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 639 (920)
.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|++|+++
T Consensus 393 ------------~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 393 ------------EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred ------------cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 44555566667777777777777777777777777888888888888887777777778888888888
Q ss_pred CceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhh
Q 048289 640 SNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEM 719 (920)
Q Consensus 640 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (920)
+|++.+.+|... ..++|+.||+++|++++.+|..+ .+
T Consensus 461 ~n~~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~-~~--------------------------------------- 497 (968)
T PLN00113 461 RNKFFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL-GS--------------------------------------- 497 (968)
T ss_pred CceeeeecCccc---ccccceEEECcCCccCCccChhh-hh---------------------------------------
Confidence 888877777643 35789999999999998888542 22
Q ss_pred hhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCC
Q 048289 720 EKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQ 799 (920)
Q Consensus 720 ~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~ 799 (920)
++.|+.|+|++|.+++.+|+.++++++|++|+|++|.++|.+|..++.+++|++|||++|+++|.+|..+.++++|+
T Consensus 498 ---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 498 ---LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred ---hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCcccCCCCCCCCCCCCCcccccCCcCCCCCC
Q 048289 800 VLNLSQNQLVGPIPQGKQFHTFSSDSYNGNMGLCGFP 836 (920)
Q Consensus 800 ~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~ 836 (920)
++++++|+++|.+|..++|.+|...+|.||+++||.+
T Consensus 575 ~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.1e-55 Score=546.21 Aligned_cols=495 Identities=34% Similarity=0.557 Sum_probs=343.5
Q ss_pred CCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccC-CCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEcc
Q 048289 157 LQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIF-RLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLY 235 (920)
Q Consensus 157 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 235 (920)
++.|+++++.+++.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++| .+.+.+|. +.+++|++|+++
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~-~~l~~L~~L~Ls 148 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR-GSIPNLETLDLS 148 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc-cccCCCCEEECc
Confidence 44444444455555566666666666666666666666665543 5666666666666 44443332 234445555555
Q ss_pred CCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcc
Q 048289 236 GCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPI 315 (920)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 315 (920)
+|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 55555555555555555555555555555445555555555555555555555444555555555555555555444444
Q ss_pred cccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhc
Q 048289 316 SSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAEL 395 (920)
Q Consensus 316 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 395 (920)
|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 229 ------------------------p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--------- 275 (968)
T PLN00113 229 ------------------------PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP--------- 275 (968)
T ss_pred ------------------------ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc---------
Confidence 44444444455555555544444455555555555555554444321
Q ss_pred CCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEE
Q 048289 396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHL 475 (920)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L 475 (920)
+|..+..+++|+.|++++|.+.+.+|..+. .++
T Consensus 276 ----------------------------------------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--~l~----- 308 (968)
T PLN00113 276 ----------------------------------------IPPSIFSLQKLISLDLSDNSLSGEIPELVI--QLQ----- 308 (968)
T ss_pred ----------------------------------------CchhHhhccCcCEEECcCCeeccCCChhHc--CCC-----
Confidence 122233333344444444444444443332 121
Q ss_pred ECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCccc
Q 048289 476 NLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPC 555 (920)
Q Consensus 476 ~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 555 (920)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..
T Consensus 309 -------------------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 309 -------------------------------------NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred -------------------------------------CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 3334444444445555666666777777777777777777776
Q ss_pred ccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCC
Q 048289 556 LANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQ 634 (920)
Q Consensus 556 ~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 634 (920)
+.... |+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..+++|+
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 66655 78888888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEcc
Q 048289 635 VLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKG 714 (920)
Q Consensus 635 ~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (920)
.|++++|.+.+.++... ..+++|+.|++++|++.+.+|..+ .
T Consensus 432 ~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~----------------------------------- 473 (968)
T PLN00113 432 FLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G----------------------------------- 473 (968)
T ss_pred EEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-----------------------------------
Confidence 99999999999887655 468999999999999998888432 0
Q ss_pred chhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccC
Q 048289 715 VNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTS 794 (920)
Q Consensus 715 ~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 794 (920)
...|+.||+++|++++.+|..++++++|+.|+|++|.+++.+|+.++++++|++|+|++|.++|.+|..++.
T Consensus 474 --------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 474 --------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred --------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 246799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeccCCcccCCCCCCC
Q 048289 795 LNFLQVLNLSQNQLVGPIPQGK 816 (920)
Q Consensus 795 l~~L~~L~ls~N~l~g~iP~~~ 816 (920)
+++|+.||+++|+++|.+|...
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred cccCCEEECCCCcccccCChhH
Confidence 9999999999999999999753
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-36 Score=314.03 Aligned_cols=362 Identities=27% Similarity=0.362 Sum_probs=210.7
Q ss_pred CCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccC
Q 048289 253 LTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY 332 (920)
Q Consensus 253 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 332 (920)
-+.|++++|.+....+..|.++++|+++++.+|.++ .+|..-....+|+.|+|.+|.|+.+-...+..++.|+.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 345777777777766777777777777777777776 5666555555677777777777776667777777777777777
Q ss_pred ccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCc
Q 048289 333 NSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLST 412 (920)
Q Consensus 333 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 412 (920)
|.++..-...+..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ .++...|.++++|+.|+|..|++...+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence 7776333344555577888888888888777777888888888888888887 777788888888888888888776443
Q ss_pred cCCCCCCCCcCceEeeeccCCcCCc-hhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCc
Q 048289 413 LLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWK 491 (920)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 491 (920)
.. .+.++++|+.|.+..|++..+. ..|..+.++++|+|+.|++...-..|++ ++.+|+.|++++|.|..+....|.
T Consensus 238 ~l-tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 238 GL-TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hh-hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccchhhhhccchhhhheeecchhh
Confidence 22 2335556666666666665554 2445555666666666665544444444 444444444444444444332221
Q ss_pred ccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCc
Q 048289 492 NLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNN 570 (920)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~ 570 (920)
..++|++|+|++|+|+...+.+|..+..|++|.|++|++...--..|...+ |++|||++|.
T Consensus 315 ------------------ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 315 ------------------FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred ------------------hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 122444444444444444444454455555555555544433333333333 4444444444
Q ss_pred ccccCC---ccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEc
Q 048289 571 FHGSIP---QTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLIL 638 (920)
Q Consensus 571 l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 638 (920)
++..+. ..|.++++|+.|++.+|++..+.-.+|.++..|+.|||.+|.|...-|+.|..+ .|+.|.+
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 443332 234444444444444444443333444444444444444444444444444444 4444443
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5e-39 Score=323.60 Aligned_cols=483 Identities=29% Similarity=0.401 Sum_probs=248.4
Q ss_pred EEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEE
Q 048289 54 VTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLD 133 (920)
Q Consensus 54 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 133 (920)
...+++++|.+... .+ .+.++..|.+|++.+|++.. +|++++.+..++.|+.+.|.+. .+|+.++.+..|+.|+
T Consensus 47 l~~lils~N~l~~l-~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVL-RE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhc-cH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 33455555544321 11 34444444444444444433 4444444444444444444444 4444444444444444
Q ss_pred cCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCC
Q 048289 134 LSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYN 213 (920)
Q Consensus 134 Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 213 (920)
.++|.. . ++++.++.+..|+.++..+|+++ ..|++++.+.+|..+++.+|
T Consensus 121 ~s~n~~----------------------------~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n 170 (565)
T KOG0472|consen 121 CSSNEL----------------------------K-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN 170 (565)
T ss_pred ccccce----------------------------e-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc
Confidence 444422 1 33444555555666666666555 45555555555555555555
Q ss_pred CCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchh
Q 048289 214 KNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPC 293 (920)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 293 (920)
.+....|..+. ++.|++||.-.|.++ .+|..++.+.+|.-|++..|++. ..|
T Consensus 171 ------------------------~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP- 222 (565)
T KOG0472|consen 171 ------------------------KLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP- 222 (565)
T ss_pred ------------------------chhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-
Confidence 44433333333 566666666666555 45666666666666666666665 344
Q ss_pred hhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 048289 294 IFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNL 373 (920)
Q Consensus 294 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 373 (920)
.|..|..|++++++.|++.........+++++..||+..|+++ ..|+++.-+.+|++||+++|.++ ..|..++++ +|
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee
Confidence 4666666666666666665332233335666666666666665 56666666666666777766666 344456666 66
Q ss_pred CEEEccCCcCCCcchhhhhh-----hcCCCce----EEcCCCccccCccCC-CCCCCCcCceEeeeccCCcCCchhhhcc
Q 048289 374 IDLSLSSNNLSGNVELYMFA-----ELKNLLG----LDLSHNSLSLSTLLP-VNSSFPYLSMLSLSSCNISEFPDFLRTQ 443 (920)
Q Consensus 374 ~~L~L~~n~l~~~~~~~~~~-----~l~~L~~----L~Ls~n~l~~~~~~~-~~~~~~~L~~L~l~~~~l~~lp~~l~~~ 443 (920)
+.|.+.+|.+. ++....+. -++.|+. =.++..+-....... ....+ ......
T Consensus 300 ~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~-----------------~~~~~~ 361 (565)
T KOG0472|consen 300 KFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF-----------------PDIYAI 361 (565)
T ss_pred eehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc-----------------cchhhh
Confidence 66767666653 22111111 1111111 001111000000000 00000 111223
Q ss_pred cccceeccCCCccCCCCCchhhccCC-CCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCc
Q 048289 444 HRLQILDLSDNQIRGGIPNWIWNVGK-DTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNN 522 (920)
Q Consensus 444 ~~L~~L~Ls~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n 522 (920)
.+.+.|++++-+++ .+|+..|...- .-...++++.|++..++..- ..++ .-++.+.+++|
T Consensus 362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L-~~lk-----------------elvT~l~lsnn 422 (565)
T KOG0472|consen 362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL-VELK-----------------ELVTDLVLSNN 422 (565)
T ss_pred hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhh-HHHH-----------------HHHHHHHhhcC
Confidence 33444444444444 33433332111 11333444444443332110 0000 01122333444
Q ss_pred eecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCc
Q 048289 523 KLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPL 601 (920)
Q Consensus 523 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 601 (920)
.+. .+|..++.+++|..|++++|-+. .+|..++... |+.|+++.|+|. ..|.+...+..++.+-.++|++....|+
T Consensus 423 ~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 423 KIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred ccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 333 56666777777777777777665 4555555544 777777777765 5566666666666666777777766666
Q ss_pred cccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289 602 SLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644 (920)
Q Consensus 602 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 644 (920)
.+.++.+|.+||+.+|.+. .+|..++++++|++|++.+|+|.
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 6777777778888777777 66777777777777777777665
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-38 Score=319.06 Aligned_cols=493 Identities=25% Similarity=0.336 Sum_probs=255.1
Q ss_pred CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCc
Q 048289 180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS 259 (920)
Q Consensus 180 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 259 (920)
.|+.+.+++|.+. .+.+.+.++..|.+|++++| ......++++.+..++.++.+.|++. .+|..++.+.+|..++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3444444444443 23333444444444444444 23333333333333333333333333 344555555555555555
Q ss_pred CCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccC
Q 048289 260 YNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339 (920)
Q Consensus 260 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 339 (920)
.|.+. .+|+.++.+-.|+.++..+|+++ ..|+.+..+.+|..+++.+|++....|..+. ++.|+++|...|.+. .+
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cC
Confidence 55554 34445555555555555555555 3444455555555555555555533333332 555555555555554 55
Q ss_pred CccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCC
Q 048289 340 PSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419 (920)
Q Consensus 340 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 419 (920)
|+.++.+.+|+-|++..|++. ..| .|..|..|+++.++.|.+. .++.+...+
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~------------------------- 250 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKH------------------------- 250 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcc-------------------------
Confidence 555555555555555555555 233 4555555555555555554 333333333
Q ss_pred CCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecc
Q 048289 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLR 499 (920)
Q Consensus 420 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~ 499 (920)
++++..|++++|+++++|+.+.-+.+|++||+|+|.+++ .|..++ .+ .|+.|.+.+|.+..+.....
T Consensus 251 L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLg--nl-hL~~L~leGNPlrTiRr~ii--------- 317 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLG--NL-HLKFLALEGNPLRTIRREII--------- 317 (565)
T ss_pred cccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccc--cc-eeeehhhcCCchHHHHHHHH---------
Confidence 334444444455555667777777777777777777763 344333 22 44444444444333211000
Q ss_pred cCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccc
Q 048289 500 SNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTF 579 (920)
Q Consensus 500 ~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~ 579 (920)
.+. -...+ +.|+. .+..-.++.. ...+-..-+ ...+..|. .
T Consensus 318 ---------------------~~g----T~~vL---KyLrs-~~~~dglS~s-----e~~~e~~~t----~~~~~~~~-~ 358 (565)
T KOG0472|consen 318 ---------------------SKG----TQEVL---KYLRS-KIKDDGLSQS-----EGGTETAMT----LPSESFPD-I 358 (565)
T ss_pred ---------------------ccc----HHHHH---HHHHH-hhccCCCCCC-----cccccccCC----CCCCcccc-h
Confidence 000 00000 11111 0000000000 000000000 00000111 1
Q ss_pred cCCCcccEEEccCCccccccCccccCCC---CCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCC
Q 048289 580 SKGSRLTILNLNDNQLEGSVPLSLVNCS---FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPF 656 (920)
Q Consensus 580 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 656 (920)
...-+.+.|++++-+++ .+|+...... -....+++.|++. .+|..+..+..+.+.-+..|+..+.+|..+ +.+
T Consensus 359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l--~~l 434 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLEL--SQL 434 (565)
T ss_pred hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHH--Hhh
Confidence 12234455555555555 2332221111 1455555555555 445544444444333233333333333333 345
Q ss_pred CCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcC
Q 048289 657 PKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKF 736 (920)
Q Consensus 657 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l 736 (920)
++|..|+|++|.+. .+|.++++ +..|+.||+|+|+|
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~-------------------------------------------lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGS-------------------------------------------LVRLQTLNLSFNRF 470 (565)
T ss_pred hcceeeecccchhh-hcchhhhh-------------------------------------------hhhhheeccccccc
Confidence 66777777776664 56655421 34478999999988
Q ss_pred CCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCccc
Q 048289 737 QGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLV 809 (920)
Q Consensus 737 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 809 (920)
. .+|+.+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++.+|++.
T Consensus 471 r-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 471 R-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred c-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 7 78999999999998888889999888888999999999999999998 77889999999999999999998
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=305.04 Aligned_cols=374 Identities=22% Similarity=0.233 Sum_probs=285.5
Q ss_pred CEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCC
Q 048289 230 RFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNN 309 (920)
Q Consensus 230 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 309 (920)
+.|++++|.+....+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45666666666666666777777777777777776 56665555566777777777777666677777777777777777
Q ss_pred CCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchh
Q 048289 310 QLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVEL 389 (920)
Q Consensus 310 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 389 (920)
.|+.+....|..-.++++|+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++. .+..
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ 238 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEG 238 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehh
Confidence 777666566666677777777777777655666667777777777777777666677777777777777777775 4555
Q ss_pred hhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc-hhhhcccccceeccCCCccCCCCCchhhccC
Q 048289 390 YMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP-DFLRTQHRLQILDLSDNQIRGGIPNWIWNVG 468 (920)
Q Consensus 390 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 468 (920)
..|.++++|+.|.+..|.+.... ...+..+.++++|++..|+++.+. .|+..+++|+.|++|.|.|...-++... .
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--f 315 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--F 315 (873)
T ss_pred hhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh--h
Confidence 66777777887777777765321 223446778888888888888765 6899999999999999999866555544 5
Q ss_pred CCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcC
Q 048289 469 KDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSL 548 (920)
Q Consensus 469 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 548 (920)
+++|++|+|++|+|+.+....+.-|. .|++|+|++|.+...-..+|..+++|++|||++|.+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~------------------~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLS------------------QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred cccceeEeccccccccCChhHHHHHH------------------HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 78888899888888888776655443 678888899999888888999999999999999999
Q ss_pred CCcCcc---cccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC------c
Q 048289 549 NGMIPP---CLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN------R 618 (920)
Q Consensus 549 ~~~~p~---~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N------~ 618 (920)
+..+-+ .+.... |+.|++.+|++..+...+|.+++.|+.|+|.+|.|..+.|.+|..+ .|++|.+..- +
T Consensus 378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 876654 344455 9999999999998888999999999999999999999999999998 8999987654 4
Q ss_pred ccccCchhhc
Q 048289 619 INGTFPAWLG 628 (920)
Q Consensus 619 l~~~~p~~l~ 628 (920)
+. .++.|+.
T Consensus 457 l~-Wl~qWl~ 465 (873)
T KOG4194|consen 457 LK-WLAQWLY 465 (873)
T ss_pred HH-HHHHHHH
Confidence 43 4555654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-35 Score=326.21 Aligned_cols=480 Identities=29% Similarity=0.388 Sum_probs=317.9
Q ss_pred EEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcC
Q 048289 184 LDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNF 263 (920)
Q Consensus 184 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 263 (920)
+|.+.+.+. .+|..+..-..++.|+++.|-.+....+.+...-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 445555555 55555555445666666666322222333334444666666666554 4566666677777777777777
Q ss_pred CccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccc
Q 048289 264 SGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGL 343 (920)
Q Consensus 264 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 343 (920)
. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|++. .+|..+..+..++.+..++|......+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg--- 154 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG--- 154 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc---
Confidence 6 45666677777777777777666 56666777777777777777765 456666666667777777662211111
Q ss_pred cCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcC
Q 048289 344 FTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYL 423 (920)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 423 (920)
.. .++.+++..|.+.+.++..+..+.. .|++.+|.+. .. .+..+.+|+
T Consensus 155 -~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~------------------------ 202 (1081)
T KOG0618|consen 155 -QT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLE------------------------ 202 (1081)
T ss_pred -cc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchh------------------------
Confidence 11 1566666666666665555555444 4666666553 11 122222222
Q ss_pred ceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcC
Q 048289 424 SMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503 (920)
Q Consensus 424 ~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l 503 (920)
.+....|++.... ...++ ++.|+.++|.+
T Consensus 203 ------------------------~l~c~rn~ls~l~------~~g~~---------------------l~~L~a~~n~l 231 (1081)
T KOG0618|consen 203 ------------------------VLHCERNQLSELE------ISGPS---------------------LTALYADHNPL 231 (1081)
T ss_pred ------------------------hhhhhhcccceEE------ecCcc---------------------hheeeeccCcc
Confidence 2222222221000 01233 44444444444
Q ss_pred CCCCCC-CCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccC
Q 048289 504 KGSIPF-LPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSK 581 (920)
Q Consensus 504 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~ 581 (920)
+...+. .+.++++++++.|+++ .+|.+++.+.+|+.++..+|+++ .+|..+.... |+.|.+..|.+. .+|.....
T Consensus 232 ~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~ 308 (1081)
T KOG0618|consen 232 TTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG 308 (1081)
T ss_pred eeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc
Confidence 422222 2567888888888888 45688999999999999999996 5565555544 999999999998 45666777
Q ss_pred CCcccEEEccCCccccccCc-cccCCC-CCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCC
Q 048289 582 GSRLTILNLNDNQLEGSVPL-SLVNCS-FLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKL 659 (920)
Q Consensus 582 l~~L~~L~L~~N~l~~~~p~-~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 659 (920)
.++|++|+|..|++. ..|. .+.... +|+.|..+.|++.......=...+.|+.|++.+|.++...-..+ ..+++|
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l--~~~~hL 385 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL--VNFKHL 385 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh--ccccce
Confidence 899999999999998 4554 334333 37888888888874332222256778999999999987654433 457899
Q ss_pred cEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCC
Q 048289 660 RILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGR 739 (920)
Q Consensus 660 ~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ 739 (920)
+.|+|++|++. .+|...+.+| ..|++|+||+|+++ .
T Consensus 386 KVLhLsyNrL~-~fpas~~~kl------------------------------------------e~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKLRKL------------------------------------------EELEELNLSGNKLT-T 421 (1081)
T ss_pred eeeeecccccc-cCCHHHHhch------------------------------------------HHhHHHhcccchhh-h
Confidence 99999999996 6787766554 34688999999998 7
Q ss_pred chhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccc-cCcccccCCCCCCeeeccCCc
Q 048289 740 IPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG-EIPWQLTSLNFLQVLNLSQNQ 807 (920)
Q Consensus 740 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~ls~N~ 807 (920)
+|..+.++..|++|...+|++.- .| ++.++++|+.+|+|.|+|+. .+|..... +.|++||+++|.
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 88999999999999999999984 46 88999999999999999984 44555444 889999999996
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-34 Score=317.71 Aligned_cols=450 Identities=30% Similarity=0.381 Sum_probs=288.3
Q ss_pred CCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCc
Q 048289 180 SLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLS 259 (920)
Q Consensus 180 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 259 (920)
+|+.||+++|.+. .+|..+..+.+|+.|+++.| .+........++.+|+++.|.+|.+. ..|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3555555555544 45555555555555555555 22211112222223333333332222 344555555555555555
Q ss_pred CCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccC
Q 048289 260 YNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTI 339 (920)
Q Consensus 260 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 339 (920)
.|.+. .+|..+..++.++.+..++|..... ++... .+.+++..|.+.+.+
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-------------------------ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-------------------------IKKLDLRLNVLGGSF 172 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-------------------------chhhhhhhhhcccch
Confidence 55554 3444444455555555554411111 11111 444444445444444
Q ss_pred CccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCC
Q 048289 340 PSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSS 419 (920)
Q Consensus 340 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 419 (920)
+..+..+.. .|+|++|.+. . ..+..+.+|+.+....|.+.... -.-++++.|+.++|.++. ......
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~---~~~~p~ 239 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTT---LDVHPV 239 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCccee---eccccc
Confidence 444444433 4555555554 1 23445555666666555554111 123566677777776651 222334
Q ss_pred CCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccC--CCCcccceEe
Q 048289 420 FPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIEL--LPWKNLRYLD 497 (920)
Q Consensus 420 ~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~ 497 (920)
..+|++++++.+++..+|+|+..+.+|+.++..+|+++ .+|..+. ...+|+.+.+.+|.++.+.. ..++.|++|+
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 55788999999999999999999999999999999985 6666665 66788899999999888876 4578899999
Q ss_pred cccCcCCCCCCCC----CCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCccc
Q 048289 498 LRSNSLKGSIPFL----PPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFH 572 (920)
Q Consensus 498 L~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~ 572 (920)
|..|++...++.. ..++..|+.+.|++.......=...+.|+.|.+.+|.++...-+.+.+.. |+.|+|++|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 9999887655432 23477778888877744422233467889999999999877655566655 999999999998
Q ss_pred ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652 (920)
Q Consensus 573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 652 (920)
......+.++..|+.|+|++|+++ .+|..+.+|..|++|...+|++. ..| .+..++.|+++|++.|+++...-...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~- 472 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA- 472 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-
Confidence 766678889999999999999998 78899999999999999999998 677 78899999999999999875433322
Q ss_pred cCCCCCCcEEEccCCcCcCCCchHHHhhhhcc
Q 048289 653 RFPFPKLRILDLSNNEFTGVLPTRYFQNFQAM 684 (920)
Q Consensus 653 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l 684 (920)
.+.|+|++||+++|.-. ......+..++.+
T Consensus 473 -~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 473 -LPSPNLKYLDLSGNTRL-VFDHKTLKVLKSL 502 (1081)
T ss_pred -CCCcccceeeccCCccc-ccchhhhHHhhhh
Confidence 23379999999999742 2333444444444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6.7e-31 Score=277.82 Aligned_cols=365 Identities=25% Similarity=0.342 Sum_probs=207.0
Q ss_pred CCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCC
Q 048289 77 LPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNE 156 (920)
Q Consensus 77 l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~ 156 (920)
++..|-.|+++|.|++...|.....++.++.|.|....+. .+|+.++.|.+|++|.+++|++.+ +...+..++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPR 79 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchh
Confidence 4455556666666665556767777777777777777776 677777777777777777776532 3334555666
Q ss_pred CCEEEcCCCCCC-CCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcC-CCCcCCCCCCCEEEc
Q 048289 157 LQELVLNSVDMS-YEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSV-FPKVNWSSPLRFMDL 234 (920)
Q Consensus 157 L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L 234 (920)
|+.+.+..|++. .-+|..+-++..|+.||||+|++. ..|..+..-+++-+|+|++|+ +... -+-+.+++.|-.|||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcc
Confidence 666666666553 235666677777777777777776 677777766777777777763 3222 124555555566666
Q ss_pred cCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCc-ccchhhhhcCCCCCEEECcCCCCCC
Q 048289 235 YGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFT-GQIPCIFANLTQLSFLDFSNNQLNG 313 (920)
Q Consensus 235 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~ 313 (920)
++|++. .+|..+..+.+|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+.
T Consensus 158 S~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred ccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 665554 33444555555666666665554322233334455555555554433 234555555555555555555554
Q ss_pred cccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhh
Q 048289 314 PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFA 393 (920)
Q Consensus 314 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 393 (920)
..|+.+-.+++|+.|+|++|+++ .+........+|++|+++.|+++ ..|+++..+++|+.|.+.+|+++-+..+..++
T Consensus 236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG 313 (1255)
T ss_pred cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence 44555555555555555555554 33333333445555555555555 45555555555555555555554333344445
Q ss_pred hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCc
Q 048289 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQ 455 (920)
Q Consensus 394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~ 455 (920)
.+.+|+.+..++|.++.. ......|+.|+.|.++.|.+..+|+.+.-++.|+.||+..|.
T Consensus 314 KL~~Levf~aanN~LElV--PEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLELV--PEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhHHHHhhccccccC--chhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence 555555555555554322 222334555555555555555555555555555555555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.4e-30 Score=272.56 Aligned_cols=362 Identities=27% Similarity=0.403 Sum_probs=259.1
Q ss_pred CCCCCEEEccCCcCc-ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEE
Q 048289 226 SSPLRFMDLYGCNFM-GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFL 304 (920)
Q Consensus 226 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 304 (920)
++-.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 444566677777777 467778888888888888888777 57888888888888888888877 445567778888888
Q ss_pred ECcCCCCCC-cccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcC
Q 048289 305 DFSNNQLNG-PISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNL 383 (920)
Q Consensus 305 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 383 (920)
.+..|++.. -+|..+-.+..|+.|||++|++. ..|..+....++-.|+|++|+|..+....|.++..|-.|||++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 888887753 35667777888888888888887 7788888888888888888888865555667888888888888887
Q ss_pred CCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCC--cCCchhhhcccccceeccCCCccCCCCC
Q 048289 384 SGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNI--SEFPDFLRTQHRLQILDLSDNQIRGGIP 461 (920)
Q Consensus 384 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~~~ 461 (920)
. ..++ ....+..|++|+|++|++..... .....+.+|+.|.+++.+- ..+|..+..+.+|..+|+|.|.+. .+|
T Consensus 163 e-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 163 E-MLPP-QIRRLSMLQTLKLSNNPLNHFQL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred h-hcCH-HHHHHhhhhhhhcCCChhhHHHH-hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 5 3332 34667788888888887653321 1223455677777777754 378888888888888888888886 677
Q ss_pred chhhccCCCCCcEEECCCCcCcCccC--CCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcC
Q 048289 462 NWIWNVGKDTLNHLNLSHNFLTGIEL--LPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIF 539 (920)
Q Consensus 462 ~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 539 (920)
+.++ .+++|+.|+||+|.|+.+.. ..+.+|+ +|++|.|+++ .+|.+++.++.|+
T Consensus 239 ecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lE---------------------tLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 239 ECLY--KLRNLRRLNLSGNKITELNMTEGEWENLE---------------------TLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred HHHh--hhhhhheeccCcCceeeeeccHHHHhhhh---------------------hhccccchhc-cchHHHhhhHHHH
Confidence 7777 67777788887777776543 2344444 4444555554 6778888888888
Q ss_pred eEeCCCCcCC-CcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCC
Q 048289 540 YVNLSNNSLN-GMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNN 617 (920)
Q Consensus 540 ~L~Ls~n~l~-~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 617 (920)
.|.+.+|+++ .-+|+.++... |+.+..++|.+. .+|..++.|..|+.|.|+.|++- .+|+++.-++.|++||+..|
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence 8888888776 22566666555 666666666664 56666667777777777777665 56666666667777777666
Q ss_pred ccc
Q 048289 618 RIN 620 (920)
Q Consensus 618 ~l~ 620 (920)
.--
T Consensus 373 pnL 375 (1255)
T KOG0444|consen 373 PNL 375 (1255)
T ss_pred cCc
Confidence 543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=4e-25 Score=223.56 Aligned_cols=131 Identities=22% Similarity=0.270 Sum_probs=77.2
Q ss_pred CCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccC-ccccccCCccccCCCCCCEEEc
Q 048289 276 QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSY-NSLNGTIPSGLFTSPLLESIDL 354 (920)
Q Consensus 276 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L 354 (920)
.-..++|..|+|+...+.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+ |+|+..-...|..+.+++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345566666666666666666666666666666666666666666666666555555 5665333334445566666666
Q ss_pred cCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCc
Q 048289 355 RNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNS 407 (920)
Q Consensus 355 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 407 (920)
..|++.....+.|..++++..|.+.+|.+. .+....|..+..++.+.+..|.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 666666555566666666666666666554 3334444455555555554443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.7e-21 Score=242.33 Aligned_cols=367 Identities=23% Similarity=0.294 Sum_probs=189.0
Q ss_pred CCcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCC-----CCCCCcCCCCC-CCCEEeCCCCCCcccCCcccc
Q 048289 51 TGHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNY-----SYISPGFTRFP-NLAHLNLSVSSFSGQIPAEIS 124 (920)
Q Consensus 51 ~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-----~~i~~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~ 124 (920)
+.+|+.+.+.-..+...-....+|.++++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 356777766544433211112267888899998886553211 12566666664 5888888888776 677666
Q ss_pred CCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 048289 125 HLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPN 204 (920)
Q Consensus 125 ~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 204 (920)
...+|++|++++|++..+ +..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..+..+++
T Consensus 609 ~~~~L~~L~L~~s~l~~L-----~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~ 682 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKL-----WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK 682 (1153)
T ss_pred CccCCcEEECcCcccccc-----ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC
Confidence 467888888888765432 23345566677777766654444443 556666666666666544556666666666
Q ss_pred CCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccC
Q 048289 205 LQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSN 284 (920)
Q Consensus 205 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 284 (920)
|+.|++++|..+ ..+|...++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.+
T Consensus 683 L~~L~L~~c~~L-~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~ 756 (1153)
T PLN03210 683 LEDLDMSRCENL-EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCE 756 (1153)
T ss_pred CCEEeCCCCCCc-CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccc
Confidence 666666665322 22332224455555555555433333321 234444444444443 233222 233444443333
Q ss_pred CcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCch
Q 048289 285 NKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSIS 364 (920)
Q Consensus 285 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 364 (920)
+.... +.. .+....+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|
T Consensus 757 ~~~~~-l~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 757 MKSEK-LWE----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cchhh-ccc----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 22110 000 0000001111122344444444444333444444444444444444443222333
Q ss_pred hhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhccc
Q 048289 365 NSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQH 444 (920)
Q Consensus 365 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~ 444 (920)
..+ .+++|+.|++++|..-. ......++|+.|++++|.++.+|.++..++
T Consensus 820 ~~~--------------------------~L~sL~~L~Ls~c~~L~----~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 820 TGI--------------------------NLESLESLDLSGCSRLR----TFPDISTNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred CCC--------------------------CccccCEEECCCCCccc----cccccccccCEeECCCCCCccChHHHhcCC
Confidence 222 33444444444442110 001123567788888888888888888888
Q ss_pred ccceeccCCCccCCCCCchhhccCCCCCcEEECCCC
Q 048289 445 RLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHN 480 (920)
Q Consensus 445 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 480 (920)
+|+.|++++|.-...+|..+. .++.|+.+++++|
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C 903 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDC 903 (1153)
T ss_pred CCCEEECCCCCCcCccCcccc--cccCCCeeecCCC
Confidence 888888888654444554433 4445555555444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1e-20 Score=237.20 Aligned_cols=346 Identities=23% Similarity=0.256 Sum_probs=215.0
Q ss_pred ccccCCCCCCEEeCcCCc------CCccCcccccCCC-CCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccc
Q 048289 245 ASLGNLSQLTYLDLSYNN------FSGHIPSTLSNLQ-QLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISS 317 (920)
Q Consensus 245 ~~l~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 317 (920)
.+|..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.+|++. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 456666777777665432 2223455555543 4777777777665 455555 4567777777777765 3455
Q ss_pred cccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCC
Q 048289 318 SVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKN 397 (920)
Q Consensus 318 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 397 (920)
.+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|.....++... ++++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCC
Confidence 566677777777776654445553 6667777777777776656677777777777777777765433333221 4555
Q ss_pred CceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEEC
Q 048289 398 LLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNL 477 (920)
Q Consensus 398 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~L 477 (920)
|+.|++++|..... .+ ...++|+.|++++|.+..+|..+ .+++|+.|++.++...
T Consensus 706 L~~L~Lsgc~~L~~--~p--~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~-------------------- 760 (1153)
T PLN03210 706 LYRLNLSGCSRLKS--FP--DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE-------------------- 760 (1153)
T ss_pred CCEEeCCCCCCccc--cc--cccCCcCeeecCCCccccccccc-cccccccccccccchh--------------------
Confidence 66666655532100 00 11234555555555555554432 2344444444332211
Q ss_pred CCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCccccc
Q 048289 478 SHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLA 557 (920)
Q Consensus 478 s~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 557 (920)
.+.. .+ ..+.......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|....
T Consensus 761 ------~l~~----~~-------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~ 823 (1153)
T PLN03210 761 ------KLWE----RV-------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN 823 (1153)
T ss_pred ------hccc----cc-------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCC
Confidence 0000 00 000001112246788888888877778888899999999999998876667777664
Q ss_pred ccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEE
Q 048289 558 NSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLI 637 (920)
Q Consensus 558 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 637 (920)
..+|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 334888888887765555543 357888889988887 6788888888899999888654446777778888888888
Q ss_pred ccCce
Q 048289 638 LRSNR 642 (920)
Q Consensus 638 L~~N~ 642 (920)
+++|.
T Consensus 900 l~~C~ 904 (1153)
T PLN03210 900 FSDCG 904 (1153)
T ss_pred cCCCc
Confidence 88874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.7e-21 Score=223.81 Aligned_cols=261 Identities=28% Similarity=0.359 Sum_probs=145.6
Q ss_pred cceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceec
Q 048289 446 LQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLS 525 (920)
Q Consensus 446 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~ 525 (920)
-..|+++++.++ .+|..+. ++|+.|++.+|+++.++ ..+++|++|++++|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP----------------------~lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLP----------------------ALPPELRTLEVSGNQLT 255 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCC----------------------CCCCCCcEEEecCCccC
Confidence 455666666665 4555443 24555555555555543 23344555555555544
Q ss_pred ccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccC
Q 048289 526 GEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVN 605 (920)
Q Consensus 526 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 605 (920)
. +|.. .++|+.|++++|.+++ +|... ..|+.|++++|+++. +|.. .++|+.|++++|++++ +|...
T Consensus 256 s-LP~l---p~sL~~L~Ls~N~L~~-Lp~lp--~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp-- 321 (788)
T PRK15387 256 S-LPVL---PPGLLELSIFSNPLTH-LPALP--SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP-- 321 (788)
T ss_pred c-ccCc---ccccceeeccCCchhh-hhhch--hhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCCc--
Confidence 2 2221 2345555555555542 22211 125555555555553 2221 2456666666666653 33211
Q ss_pred CCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccc
Q 048289 606 CSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMM 685 (920)
Q Consensus 606 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~ 685 (920)
.+|+.|++++|++++ +|.. ..+|++|+|++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 322 -~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l--------- 380 (788)
T PRK15387 322 -SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL--------- 380 (788)
T ss_pred -ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc---------
Confidence 245556666666653 3321 1356666666666654 2221 2456667777776663 4421
Q ss_pred cCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcC
Q 048289 686 HGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIP 765 (920)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 765 (920)
+..|+.|++++|.|++ +|.. .++|+.|++++|+|++ +|
T Consensus 381 -------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP 418 (788)
T PRK15387 381 -------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP 418 (788)
T ss_pred -------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence 1235677777777774 4543 2567778888888775 56
Q ss_pred cccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccCCCCC
Q 048289 766 YSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVGPIPQ 814 (920)
Q Consensus 766 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 814 (920)
... .+|+.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|.
T Consensus 419 ~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 419 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 432 45677888888877 5777777888888888888888877665
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6.4e-21 Score=220.80 Aligned_cols=192 Identities=30% Similarity=0.393 Sum_probs=93.2
Q ss_pred ceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCcC
Q 048289 424 SMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNSL 503 (920)
Q Consensus 424 ~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l 503 (920)
..|+++++.++.+|+.+. ++|+.|++++|+++. +|. ..++|++|++++|+++.++. ..++|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~LtsLP~-lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCcccC-cccccceeeccCCch
Confidence 345555555555565443 256666666666653 332 23556666666666665532 234555666666655
Q ss_pred CCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccCCC
Q 048289 504 KGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSKGS 583 (920)
Q Consensus 504 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 583 (920)
.. +|..+.+|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ...|+.|++++|.+++ +|.. ..
T Consensus 275 ~~-Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l---p~ 342 (788)
T PRK15387 275 TH-LPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL---PS 342 (788)
T ss_pred hh-hhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-cccc---cc
Confidence 43 22234555666666665553 232 12456666666666653 2221 1125555555555543 2221 12
Q ss_pred cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceee
Q 048289 584 RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFH 644 (920)
Q Consensus 584 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 644 (920)
+|+.|+|++|++++ +|.. ..+|+.|++++|+++. +|.. .++|+.|++++|+++
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred ccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 45555555555552 3321 1344555555555552 3322 123444444444444
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-21 Score=198.96 Aligned_cols=298 Identities=21% Similarity=0.207 Sum_probs=225.2
Q ss_pred eEecccCcCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-ccee-ecCCCccc
Q 048289 495 YLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFL-DMRMNNFH 572 (920)
Q Consensus 495 ~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L-~L~~n~l~ 572 (920)
.++.++-.++.++...|+...+++|..|+|+...+.+|..+++|+.|||++|.|+.+-|+.|.+.. +..| +.++|+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 456666677777777899999999999999999999999999999999999999999999999887 5444 55559999
Q ss_pred ccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcc
Q 048289 573 GSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVT 652 (920)
Q Consensus 573 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 652 (920)
......|.++.+|+.|.+.-|++.-+..++|..+++|..|.+..|.+....-..|..+.+++.+++..|.+...
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd------ 203 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD------ 203 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc------
Confidence 88889999999999999999999988899999999999999999999855555899999999999999986532
Q ss_pred cCCCCCCcEEE----ccCCcCcCCCchHHHhh-hhccccCCCCCCCCCcceecc---Ccceee-EEEEEccchhhhhhhc
Q 048289 653 RFPFPKLRILD----LSNNEFTGVLPTRYFQN-FQAMMHGNNNSAEGGNMYINY---GNEYYS-AILTVKGVNMEMEKVL 723 (920)
Q Consensus 653 ~~~l~~L~~L~----Ls~N~l~~~~p~~~~~~-l~~l~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~ 723 (920)
++++.+.... +.--.+...+|...-.. ..+.. ...|..+ ....+. ............++.+
T Consensus 204 -CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~---------a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L 273 (498)
T KOG4237|consen 204 -CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED---------ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL 273 (498)
T ss_pred -cccchhhhHHhhchhhcccceecchHHHHHHHhcccc---------hhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence 2333322111 11111122233221100 00000 0000000 000000 0000001122235568
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL 803 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 803 (920)
+.|+.|+|++|++++.-+..|..+.++++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|+.+.+|.+|++
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 89999999999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred cCCcc
Q 048289 804 SQNQL 808 (920)
Q Consensus 804 s~N~l 808 (920)
-.|++
T Consensus 354 ~~Np~ 358 (498)
T KOG4237|consen 354 LSNPF 358 (498)
T ss_pred ccCcc
Confidence 98876
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.7e-19 Score=210.65 Aligned_cols=206 Identities=27% Similarity=0.447 Sum_probs=104.5
Q ss_pred cCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccC
Q 048289 422 YLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSN 501 (920)
Q Consensus 422 ~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n 501 (920)
+...|++++++++.+|..+. +.++.|++++|+++ .+|..+. .+|++|++++|.++.++..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~------------- 238 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPAT------------- 238 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChh-------------
Confidence 45566777766666665442 35666666666665 3343321 3455555555555444332
Q ss_pred cCCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccccceeecCCCcccccCCccccC
Q 048289 502 SLKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSSLWFLDMRMNNFHGSIPQTFSK 581 (920)
Q Consensus 502 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 581 (920)
.+++|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|++++ +|..+.
T Consensus 239 --------l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp- 303 (754)
T PRK15370 239 --------LPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP- 303 (754)
T ss_pred --------hhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-
Confidence 2334455555555544 3343332 34555555555555 2343332 125555555555553 232221
Q ss_pred CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661 (920)
Q Consensus 582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 661 (920)
++|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+ .++|+.
T Consensus 304 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l----p~~L~~ 371 (754)
T PRK15370 304 -SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL----PPTITT 371 (754)
T ss_pred -hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh----cCCcCE
Confidence 345666666666653 343322 456666666666653 444332 456666666666552 33322 245666
Q ss_pred EEccCCcCcCCCch
Q 048289 662 LDLSNNEFTGVLPT 675 (920)
Q Consensus 662 L~Ls~N~l~~~~p~ 675 (920)
|++++|+++ .+|.
T Consensus 372 LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 372 LDVSRNALT-NLPE 384 (754)
T ss_pred EECCCCcCC-CCCH
Confidence 777777666 3443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.3e-19 Score=211.84 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=40.3
Q ss_pred cccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccc----cCCCCCCe
Q 048289 725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQL----TSLNFLQV 800 (920)
Q Consensus 725 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l----~~l~~L~~ 800 (920)
.|+.|++++|+|+ .+|..+. +.|+.|+|++|+|+. +|..+. .+|+.|++++|+|+ .+|..+ ..++.+..
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 3455666666655 3444442 456666666666653 344333 24566666666655 333322 23355566
Q ss_pred eeccCCccc
Q 048289 801 LNLSQNQLV 809 (920)
Q Consensus 801 L~ls~N~l~ 809 (920)
+++.+|+++
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 666666654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=6.4e-18 Score=184.55 Aligned_cols=91 Identities=18% Similarity=0.061 Sum_probs=46.8
Q ss_pred EEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCccc----CCccccCCCCCCEEEcCCCCCCC--CCCchHHHHHhcCC
Q 048289 82 ILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQ----IPAEISHLSKLVSLDLSGNSQLG--LDTPVLKALVQNLN 155 (920)
Q Consensus 82 ~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~~~~--~~~~~l~~~~~~l~ 155 (920)
.|+|..+.+++......+..++.|++|+++++.+++. ++..+...+.|++|+++++.+.. .....+...+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666666444444455666677777777766432 34444555666666666664431 11122233344444
Q ss_pred CCCEEEcCCCCCCCCcc
Q 048289 156 ELQELVLNSVDMSYEVP 172 (920)
Q Consensus 156 ~L~~L~L~~~~~~~~~~ 172 (920)
+|++|++++|.+....+
T Consensus 82 ~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 82 GLQELDLSDNALGPDGC 98 (319)
T ss_pred ceeEEEccCCCCChhHH
Confidence 55555555554443333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=8.5e-18 Score=183.57 Aligned_cols=133 Identities=28% Similarity=0.301 Sum_probs=66.5
Q ss_pred EECCCCCCcc-cCCCCCCccCCCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCCCCcc------cCCccccCC
Q 048289 57 LDLSCSRLHG-SIPSDSSLFSLPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVSSFSG------QIPAEISHL 126 (920)
Q Consensus 57 L~L~~~~l~~-~~~~~~~l~~l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n~~~~------~~p~~l~~l 126 (920)
|+|.++.+.+ .... .+..++.|++|+++++.++.. .++..+...+.|++|+++++.+.+ .++..+.++
T Consensus 3 l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 4555555542 2222 344556677777777666432 134445566667777776666541 223445556
Q ss_pred CCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCC----cchhccCC-CCCCEEEccCCcCC
Q 048289 127 SKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYE----VPSFLTNL-SSLTSLDLGNCGLQ 192 (920)
Q Consensus 127 ~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l-~~L~~L~Ls~n~l~ 192 (920)
++|++|++++|.+.......+...... ++|++|++++|.+++. +...+..+ ++|+.|++++|.++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 677777777665543222222222222 3466666666655421 12223333 44455555554444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=7.3e-17 Score=145.21 Aligned_cols=180 Identities=32% Similarity=0.563 Sum_probs=113.0
Q ss_pred CcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEE
Q 048289 583 SRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRIL 662 (920)
Q Consensus 583 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 662 (920)
..++.|.|++|+++ .+|..++.+.+|++|++++|+|. .+|..++.++.|+.|+++-|++. ..|..+ ..+|.|+.|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhh
Confidence 33444444444444 33334444444444444444444 34444444444444444444443 122222 345555555
Q ss_pred EccCCcCcC-CCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCch
Q 048289 663 DLSNNEFTG-VLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIP 741 (920)
Q Consensus 663 ~Ls~N~l~~-~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip 741 (920)
|+++|++.. .+|..+|. +..|+.|+|+.|.+. .+|
T Consensus 108 dltynnl~e~~lpgnff~-------------------------------------------m~tlralyl~dndfe-~lp 143 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALYLGDNDFE-ILP 143 (264)
T ss_pred hccccccccccCCcchhH-------------------------------------------HHHHHHHHhcCCCcc-cCC
Confidence 555555543 34433321 355678899999998 789
Q ss_pred hhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCC---CCCeeeccCCcccCCCC
Q 048289 742 EVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLN---FLQVLNLSQNQLVGPIP 813 (920)
Q Consensus 742 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~---~L~~L~ls~N~l~g~iP 813 (920)
+.+|++++|+.|.+..|.+- ..|.+++.|+.|++|.+.+|+++ .+|..++++. +=+++.+.+|+..-+|-
T Consensus 144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 99999999999999999987 56999999999999999999999 5566666653 33456677777665554
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=8.7e-15 Score=171.27 Aligned_cols=118 Identities=37% Similarity=0.600 Sum_probs=105.7
Q ss_pred cccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeecc
Q 048289 725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLS 804 (920)
Q Consensus 725 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls 804 (920)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCC--CCCCCcccccCCcCCCCCCCCCCCC
Q 048289 805 QNQLVGPIPQGKQ--FHTFSSDSYNGNMGLCGFPLSEKCS 842 (920)
Q Consensus 805 ~N~l~g~iP~~~~--~~~~~~~~~~~n~~lcg~~~~~~c~ 842 (920)
+|+++|.+|.... +.......+.+|+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 1223345678999999987655674
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=7.4e-17 Score=145.17 Aligned_cols=151 Identities=26% Similarity=0.404 Sum_probs=95.4
Q ss_pred CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCE
Q 048289 52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS 131 (920)
Q Consensus 52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 131 (920)
.+++.|.||+|.+. .+|+ .++.+.+|++|++++|+++. +|..+++++.|+.|++.-|++. .+|..|+.++.|++
T Consensus 33 s~ITrLtLSHNKl~-~vpp--nia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhcccCcee-ecCC--cHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 57788888888876 4555 68888888888888888876 7888888888888888888877 78888888888888
Q ss_pred EEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEcc
Q 048289 132 LDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILS 211 (920)
Q Consensus 132 L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 211 (920)
||+++|.+.. ..++..+..++.|+.|+++.|++. .+|..++++++|+.|.+..|.+- .+|..++.+++|++|++.
T Consensus 107 ldltynnl~e---~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 107 LDLTYNNLNE---NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhcccccccc---ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 8888875432 333333334444444444444443 33444444444444444444443 344444444444444444
Q ss_pred CC
Q 048289 212 YN 213 (920)
Q Consensus 212 ~n 213 (920)
+|
T Consensus 182 gn 183 (264)
T KOG0617|consen 182 GN 183 (264)
T ss_pred cc
Confidence 44
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=3.4e-12 Score=149.60 Aligned_cols=104 Identities=36% Similarity=0.674 Sum_probs=78.7
Q ss_pred CCCCCCCCCc----cccceEecC--CC--CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCC
Q 048289 31 ISWKEEKDCC----SWDGVTCDM--MT--GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRF 102 (920)
Q Consensus 31 ~~w~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l 102 (920)
.+|. ++.|| .|.||.|.. .. .+|+.|+|+++.+.|.+|. .+..+++|++|+|++|.+.+. +|..++.+
T Consensus 390 ~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l 465 (623)
T PLN03150 390 FGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSI 465 (623)
T ss_pred CCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCC
Confidence 4785 34443 799999952 22 2589999999999888887 778888888888888877765 77777778
Q ss_pred CCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCC
Q 048289 103 PNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNS 138 (920)
Q Consensus 103 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 138 (920)
++|++|+|++|.+++.+|..++++++|++|+|++|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 888888888887777777777777777777777764
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.1e-12 Score=130.51 Aligned_cols=239 Identities=24% Similarity=0.303 Sum_probs=130.4
Q ss_pred CCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCC---CCcccCCc-------cccCCCCCCEEEcCCCCCCCCC
Q 048289 77 LPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVS---SFSGQIPA-------EISHLSKLVSLDLSGNSQLGLD 143 (920)
Q Consensus 77 l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n---~~~~~~p~-------~l~~l~~L~~L~Ls~n~~~~~~ 143 (920)
+..++.++||+|.|... .+...+.+.+.|+..++|+- +....+|. ++-.+++|++||||.|.+-.-.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 34444444444444321 12233455556666666642 22223443 3456678899999988776666
Q ss_pred CchHHHHHhcCCCCCEEEcCCCCCCCCcchh-------------ccCCCCCCEEEccCCcCCCC----CCcccCCCCCCC
Q 048289 144 TPVLKALVQNLNELQELVLNSVDMSYEVPSF-------------LTNLSSLTSLDLGNCGLQGS----IPENIFRLPNLQ 206 (920)
Q Consensus 144 ~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~-------------l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~ 206 (920)
...+...+.++..|++|+|.+|.+...--.. ...-+.|+++...+|++... +...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 6777888888999999999999876432222 22335666666666665432 112334455555
Q ss_pred EEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccCCCCCCEEeCcCCcCCcc----CcccccCCCCCCEEEc
Q 048289 207 NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGNLSQLTYLDLSYNNFSGH----IPSTLSNLQQLRHLDL 282 (920)
Q Consensus 207 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L 282 (920)
.+.+..|......+. .+..++..+++|+.|||.+|.++.. +...+..+++|+.|++
T Consensus 189 evr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred eEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 555555522211110 1223455566666666666655421 2234455566666666
Q ss_pred cCCcCcccchhhh-----hcCCCCCEEECcCCCCCCc----ccccccCCCcCceeeccCccc
Q 048289 283 SNNKFTGQIPCIF-----ANLTQLSFLDFSNNQLNGP----ISSSVSRLHSLVTIYLSYNSL 335 (920)
Q Consensus 283 ~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 335 (920)
++|.+...-...| ...++|+.+.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666653222221 1346666677766666532 122334466677777777776
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.1e-11 Score=132.49 Aligned_cols=191 Identities=29% Similarity=0.480 Sum_probs=115.9
Q ss_pred cCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCCCCcEEECCC
Q 048289 538 IFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGN 616 (920)
Q Consensus 538 L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~ 616 (920)
-...|++.|++. .+|..++.+. |+.+.+.+|.+. .+|.++.++..|+.|+|+.|+++ ..|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 334555666554 4444444443 555555555554 44555555555666666666655 4555555444 55555555
Q ss_pred CcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCc
Q 048289 617 NRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGN 696 (920)
Q Consensus 617 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 696 (920)
|+++ .+|+.++. .+.|..||.+.|++. .+|.+. ++
T Consensus 153 Nkl~-~lp~~ig~--------------------------~~tl~~ld~s~nei~-slpsql-~~---------------- 187 (722)
T KOG0532|consen 153 NKLT-SLPEEIGL--------------------------LPTLAHLDVSKNEIQ-SLPSQL-GY---------------- 187 (722)
T ss_pred Cccc-cCCccccc--------------------------chhHHHhhhhhhhhh-hchHHh-hh----------------
Confidence 5555 44444443 344555555555554 234332 22
Q ss_pred ceeccCcceeeEEEEEccchhhhhhhcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCcc
Q 048289 697 MYINYGNEYYSAILTVKGVNMEMEKVLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLES 776 (920)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~ 776 (920)
+..|+.|.+..|++. .+|+++..| .|..||+|+|+++ .||-.|.+|+.|++
T Consensus 188 --------------------------l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 188 --------------------------LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred --------------------------HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhhee
Confidence 234566677777777 567777754 5788999999998 67999999999999
Q ss_pred ccCCCCcccccCcccc---cCCCCCCeeeccCCc
Q 048289 777 LDLSSNKVAGEIPWQL---TSLNFLQVLNLSQNQ 807 (920)
Q Consensus 777 L~Ls~N~l~g~ip~~l---~~l~~L~~L~ls~N~ 807 (920)
|-|.+|.|... |..+ +...-.++|+..-++
T Consensus 239 l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 239 LQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence 99999999843 4332 455667777777775
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.5e-10 Score=127.12 Aligned_cols=199 Identities=33% Similarity=0.475 Sum_probs=135.8
Q ss_pred eeecCCCcccccCCccccCCCcccEEEccCCccccccCccccCCC-CCcEEECCCCcccccCchhhcCCCCCCEEEccCc
Q 048289 563 FLDMRMNNFHGSIPQTFSKGSRLTILNLNDNQLEGSVPLSLVNCS-FLEVLDVGNNRINGTFPAWLGALSELQVLILRSN 641 (920)
Q Consensus 563 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 641 (920)
.+++..|.+...+ ......+.++.|++.+|.++ .+|......+ +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455555543222 12223356777777777777 4454555553 7777777777777 45556677777777777777
Q ss_pred eeecccCCCcccCCCCCCcEEEccCCcCcCCCchHHHhhhhccccCCCCCCCCCcceeccCcceeeEEEEEccchhhhhh
Q 048289 642 RFHGPITYSVTRFPFPKLRILDLSNNEFTGVLPTRYFQNFQAMMHGNNNSAEGGNMYINYGNEYYSAILTVKGVNMEMEK 721 (920)
Q Consensus 642 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (920)
++....+.. ...+.|+.|++++|++.. +|... .
T Consensus 174 ~l~~l~~~~---~~~~~L~~L~ls~N~i~~-l~~~~-------------------------------------------~ 206 (394)
T COG4886 174 DLSDLPKLL---SNLSNLNNLDLSGNKISD-LPPEI-------------------------------------------E 206 (394)
T ss_pred hhhhhhhhh---hhhhhhhheeccCCcccc-Cchhh-------------------------------------------h
Confidence 776543321 145678888888888873 34221 0
Q ss_pred hcccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCee
Q 048289 722 VLNIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVL 801 (920)
Q Consensus 722 ~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 801 (920)
.+..|+++++++|.+. .++..++++..+..|.+++|++... +..++.+++++.|++++|.++...+ ++.+..++.|
T Consensus 207 ~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L 282 (394)
T COG4886 207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL 282 (394)
T ss_pred hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEE
Confidence 1234678888888644 5666788888888888888888753 6778888889999999999885544 8888999999
Q ss_pred eccCCcccCCCCCC
Q 048289 802 NLSQNQLVGPIPQG 815 (920)
Q Consensus 802 ~ls~N~l~g~iP~~ 815 (920)
++++|.++...|..
T Consensus 283 ~~s~n~~~~~~~~~ 296 (394)
T COG4886 283 DLSGNSLSNALPLI 296 (394)
T ss_pred eccCccccccchhh
Confidence 99999988777754
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.2e-11 Score=123.26 Aligned_cols=86 Identities=31% Similarity=0.400 Sum_probs=38.5
Q ss_pred CCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCC-----CCCCCcCceEeeeccCCcCCc--hhhhcc
Q 048289 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPV-----NSSFPYLSMLSLSSCNISEFP--DFLRTQ 443 (920)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp--~~l~~~ 443 (920)
..|+.|+|++|++...........++.|+.|+++.+.++.....+. ...+++|++|++..|++.+.+ ..+..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL 325 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence 3445555555544433333344445555555555554444333332 223455555555555554433 223334
Q ss_pred cccceeccCCCcc
Q 048289 444 HRLQILDLSDNQI 456 (920)
Q Consensus 444 ~~L~~L~Ls~n~l 456 (920)
++|+.|.+..|.+
T Consensus 326 ~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 326 ENLKHLRITLNYL 338 (505)
T ss_pred chhhhhhcccccc
Confidence 4444444444443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=6e-11 Score=127.08 Aligned_cols=194 Identities=28% Similarity=0.375 Sum_probs=132.7
Q ss_pred CceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCCCCcccceEecccCc
Q 048289 423 LSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELLPWKNLRYLDLRSNS 502 (920)
Q Consensus 423 L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~ 502 (920)
-...+++.|++.++|..+..+..|+.+.+..|.+. .+|..+. .+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~--~L--------------------------------- 120 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAIC--NL--------------------------------- 120 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhh--hh---------------------------------
Confidence 34456666666666666666666666666666554 3333332 11
Q ss_pred CCCCCCCCCCCCceEEecCceecccCcccccCCCCcCeEeCCCCcCCCcCcccccccc-cceeecCCCcccccCCccccC
Q 048289 503 LKGSIPFLPPSLNFISVSNNKLSGEIPLSFCNMSSIFYVNLSNNSLNGMIPPCLANSS-LWFLDMRMNNFHGSIPQTFSK 581 (920)
Q Consensus 503 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~ 581 (920)
..|++++++.|+++ ..|..++.++ |+.|.+++|+++ .+|..+.... |..||.+.|.+. .+|..+..
T Consensus 121 ---------~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 121 ---------EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred ---------hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh
Confidence 24455555666655 5666677664 888889999887 5666666544 888899989887 56677788
Q ss_pred CCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcE
Q 048289 582 GSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRI 661 (920)
Q Consensus 582 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 661 (920)
+.+|+.|.+..|++. .+|..+.. -.|..||+++|+++ .+|..|.++..|++|-|.+|.+..+...-......-=.++
T Consensus 188 l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred HHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 888999999999887 56777774 45888999999998 7888899999999999999988754222111122223467
Q ss_pred EEccCCc
Q 048289 662 LDLSNNE 668 (920)
Q Consensus 662 L~Ls~N~ 668 (920)
|+...++
T Consensus 265 L~~qA~q 271 (722)
T KOG0532|consen 265 LSTQACQ 271 (722)
T ss_pred ecchhcc
Confidence 7777664
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=7.7e-10 Score=124.37 Aligned_cols=197 Identities=35% Similarity=0.481 Sum_probs=122.9
Q ss_pred EEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCC-CCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEE
Q 048289 82 ILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLS-KLVSLDLSGNSQLGLDTPVLKALVQNLNELQEL 160 (920)
Q Consensus 82 ~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~-~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L 160 (920)
.++++.+.+... ...+..++.++.|++.++.++ .+|.....+. +|+.|++++|.+..+ +..+..+++|+.|
T Consensus 97 ~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-----~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSN--ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-----PSPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccC--chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-----hhhhhcccccccc
Confidence 577777766332 233556678899999998888 6676677774 899999998876543 2456777888888
Q ss_pred EcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCc
Q 048289 161 VLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFM 240 (920)
Q Consensus 161 ~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~ 240 (920)
++++|+++.. +......+.|+.|++++|++. .+|........|++|.+++| .....+..+..+.++..+.+.+|++.
T Consensus 169 ~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 169 DLSFNDLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred ccCCchhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCCceee
Confidence 8888877633 433446778888888888877 56665555666777777777 23333334455555555555555443
Q ss_pred ccccccccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccch
Q 048289 241 GSIPASLGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIP 292 (920)
Q Consensus 241 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 292 (920)
.. +..++.++++++|++++|.++.. +. ++.+.+++.|+++++.+....+
T Consensus 246 ~~-~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 246 DL-PESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ec-cchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 21 34455555555555555555532 22 5555555555555555554333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-10 Score=121.07 Aligned_cols=211 Identities=23% Similarity=0.245 Sum_probs=107.5
Q ss_pred CCCCCCEEeCCCCCCcccCC--ccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhc-cC
Q 048289 101 RFPNLAHLNLSVSSFSGQIP--AEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFL-TN 177 (920)
Q Consensus 101 ~l~~L~~L~Ls~n~~~~~~p--~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l-~~ 177 (920)
++..|+...|.++.+. ..+ .....|++++.||||+|-+... ..+......+++|+.|+++.|.+........ ..
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhH--HHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 4455555555555443 222 2334455555555555532211 2233444455555555555554432221111 13
Q ss_pred CCCCCEEEccCCcCCCC-CCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccc-cccccCCCCCCE
Q 048289 178 LSSLTSLDLGNCGLQGS-IPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSI-PASLGNLSQLTY 255 (920)
Q Consensus 178 l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~ 255 (920)
+++|+.|.++.|.++-. +...+..+|+|+.|+|.+|............+..|++|+|++|.+.... ....+.++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 45666666666655421 1122334566666666666311111113344556666666666654321 133566677777
Q ss_pred EeCcCCcCCcc-Cccc-----ccCCCCCCEEEccCCcCccc-chhhhhcCCCCCEEECcCCCCCCc
Q 048289 256 LDLSYNNFSGH-IPST-----LSNLQQLRHLDLSNNKFTGQ-IPCIFANLTQLSFLDFSNNQLNGP 314 (920)
Q Consensus 256 L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~ 314 (920)
|+++.+.+... .|+. ...+++|++|++..|++..- .-..+..+++|+.|.+..|.+...
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 77777766543 2222 24567888888888887421 112345567777888777777643
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=1.6e-10 Score=117.19 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=21.1
Q ss_pred hccCCCCCCEEEccCCcCCCCCCcc----cCCCCCCCEEEccCC
Q 048289 174 FLTNLSSLTSLDLGNCGLQGSIPEN----IFRLPNLQNLILSYN 213 (920)
Q Consensus 174 ~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~L~~n 213 (920)
++..+++|++||||+|-+....+.. +..+..|++|.|.+|
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 3445556666666666554333322 234555666666555
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.2e-09 Score=130.60 Aligned_cols=127 Identities=30% Similarity=0.325 Sum_probs=77.9
Q ss_pred CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCC--CCCCCCC-CcCCCCCCCCEEeCCCCCCcccCCccccCCCC
Q 048289 52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFND--FNYSYIS-PGFTRFPNLAHLNLSVSSFSGQIPAEISHLSK 128 (920)
Q Consensus 52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~--~~~~~i~-~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~ 128 (920)
..+|++.+-++.+. .++. -...+.|++|-+..|. +.. ++ ..|..++.|++|||++|.--+.+|..|+.|-+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~---~~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAG---SSENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchh-hccC---CCCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 35566666665543 2221 2234467777777775 322 33 33677888888888887666688888888888
Q ss_pred CCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCC
Q 048289 129 LVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNC 189 (920)
Q Consensus 129 L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n 189 (920)
||+|+++++.+ ..+|..+.+++.|.+|++..+.....+|.....+++|++|.+...
T Consensus 597 LryL~L~~t~I-----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 597 LRYLDLSDTGI-----SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccCCCc-----cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 88888888755 345555666666666666655544344444444555555555443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=7.6e-10 Score=109.28 Aligned_cols=133 Identities=33% Similarity=0.357 Sum_probs=72.4
Q ss_pred cCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCce
Q 048289 248 GNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVT 327 (920)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 327 (920)
...+.|+++|+++|.|+ .+.++..-.+.++.|+++.|.+... ..++.+++|+.|++++|.++. +..+-..+.+.+.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence 33455666666666665 3445555566666666666666522 225566666666666666552 2333344556666
Q ss_pred eeccCccccccCCccccCCCCCCEEEccCCCCCCCc-hhhhhcCCCCCEEEccCCcCCCc
Q 048289 328 IYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSI-SNSISELVNLIDLSLSSNNLSGN 386 (920)
Q Consensus 328 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~ 386 (920)
|.+++|.+. .-.++..+-+|..||+++|+|.... -..++++|.|+.+.+.+|.+.+.
T Consensus 357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 666666553 1234445555666666666554211 12455555666666666655543
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=4.1e-09 Score=100.85 Aligned_cols=110 Identities=30% Similarity=0.366 Sum_probs=29.7
Q ss_pred hcCCCCCEEECcCCCCCCccccccc-CCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 048289 296 ANLTQLSFLDFSNNQLNGPISSSVS-RLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI 374 (920)
Q Consensus 296 ~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 374 (920)
.+..++++|+|.+|.|+.+ +.++ .+.+|+.|++++|.++. + +.+..++.|++|++++|.++...+.....+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3445677777777777643 2343 45667777777777652 2 2355566666666666666643222123456666
Q ss_pred EEEccCCcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289 375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLS 409 (920)
Q Consensus 375 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 409 (920)
.|++++|++........+..+++|+.|++.+|+++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666654444444455555555555555443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=6.9e-10 Score=109.57 Aligned_cols=137 Identities=25% Similarity=0.269 Sum_probs=80.8
Q ss_pred ccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCC
Q 048289 271 LSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE 350 (920)
Q Consensus 271 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 350 (920)
+..+..|+++||++|.|+ .+.++..-.++++.|++++|.+... ..++.+++|+.||+++|.++ .+..+-..+-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 344556777777777776 5556666677777777777777643 23666677777777777665 3333334455566
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeec
Q 048289 351 SIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSS 430 (920)
Q Consensus 351 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~ 430 (920)
+|.|+.|.+... ..+..+-+|..||+++|++. ..........+|.|+++.+.+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-------------------------~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIE-------------------------ELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchh-------------------------hHHHhcccccccHHHHHhhcC
Confidence 666666655421 23444445555555555554 333344445566666666666
Q ss_pred cCCcCCch
Q 048289 431 CNISEFPD 438 (920)
Q Consensus 431 ~~l~~lp~ 438 (920)
|.+..+++
T Consensus 409 NPl~~~vd 416 (490)
T KOG1259|consen 409 NPLAGSVD 416 (490)
T ss_pred CCccccch
Confidence 66665554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.4e-09 Score=130.14 Aligned_cols=250 Identities=19% Similarity=0.214 Sum_probs=146.5
Q ss_pred CcEEEEECCCCCC-cccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCC
Q 048289 52 GHVTGLDLSCSRL-HGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLV 130 (920)
Q Consensus 52 ~~v~~L~L~~~~l-~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 130 (920)
..+++|-+..+.. ...++. ..|..++.|++|||++|.-... +|+.++.+-+||||+|+++.+. .+|..+++|..|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 3578888887752 223332 1477899999999999754333 9999999999999999999998 8999999999999
Q ss_pred EEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCC--CCCCcchhccCCCCCCEEEccCCcCCCCCCcccCCCCCCC--
Q 048289 131 SLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVD--MSYEVPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPNLQ-- 206 (920)
Q Consensus 131 ~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-- 206 (920)
+||+..+.... .++.....+.+|++|.+.... .+......+.++.+|+.+....... .+-..+..+++|.
T Consensus 622 ~Lnl~~~~~l~----~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 622 YLNLEVTGRLE----SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSL 695 (889)
T ss_pred eeccccccccc----cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHH
Confidence 99999885432 225556679999999997764 2333345566677777777654433 1112233333333
Q ss_pred --EEEccCCCCCCcCCCCcCCCCCCCEEEccCCcCcccccccccC------CCCCCEEeCcCCcCCccCcccccCCCCCC
Q 048289 207 --NLILSYNKNLTSVFPKVNWSSPLRFMDLYGCNFMGSIPASLGN------LSQLTYLDLSYNNFSGHIPSTLSNLQQLR 278 (920)
Q Consensus 207 --~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 278 (920)
.+.+.++ .....+..+..+.+|+.|.+.++.+.......... ++++..+.+.++... ..+.+..-.++|+
T Consensus 696 ~~~l~~~~~-~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 696 LQSLSIEGC-SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLT 773 (889)
T ss_pred hHhhhhccc-ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCccc
Confidence 2222222 33333445666667777777766654322211111 112222222222111 1222223345666
Q ss_pred EEEccCCcCcccchhhhhcCCCCCEEECcCCCCC
Q 048289 279 HLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLN 312 (920)
Q Consensus 279 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 312 (920)
.|.+..+.....+......+..+..+.+..+.+.
T Consensus 774 ~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 774 SLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred EEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 6666665554444444444444444444444443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=5.2e-09 Score=100.14 Aligned_cols=111 Identities=32% Similarity=0.368 Sum_probs=28.5
Q ss_pred CcCCCCCCCEEEccCCcCccccccccc-CCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCC
Q 048289 222 KVNWSSPLRFMDLYGCNFMGSIPASLG-NLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQ 300 (920)
Q Consensus 222 ~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 300 (920)
.+.+..++++|+|++|.++.. +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++...+.....+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 334444556666666665532 2343 456667777777776643 24566667777777777766432222235667
Q ss_pred CCEEECcCCCCCCcc-cccccCCCcCceeeccCcccc
Q 048289 301 LSFLDFSNNQLNGPI-SSSVSRLHSLVTIYLSYNSLN 336 (920)
Q Consensus 301 L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~ 336 (920)
|++|++++|++.... -..+..+++|+.|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777665421 123344455555555555443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=3.6e-09 Score=83.04 Aligned_cols=60 Identities=43% Similarity=0.603 Sum_probs=39.1
Q ss_pred CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcc
Q 048289 749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQL 808 (920)
Q Consensus 749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l 808 (920)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655556666666666666666666666666666666666666666654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=6.8e-09 Score=81.47 Aligned_cols=61 Identities=36% Similarity=0.549 Sum_probs=57.0
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcc
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKV 784 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l 784 (920)
+.|++|++++|+++...+..|..+++|++|++++|+++...|.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3579999999999977778999999999999999999999999999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=4.9e-09 Score=117.90 Aligned_cols=85 Identities=31% Similarity=0.357 Sum_probs=57.5
Q ss_pred ccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCccccc---Cccc-ccCCCCCCee
Q 048289 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGE---IPWQ-LTSLNFLQVL 801 (920)
Q Consensus 726 l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~---ip~~-l~~l~~L~~L 801 (920)
++.+++++|.+. .++..+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ......+...
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 577788888877 3445667778888888888887765 3455666777778888876522 1111 4556777777
Q ss_pred eccCCcccCCCC
Q 048289 802 NLSQNQLVGPIP 813 (920)
Q Consensus 802 ~ls~N~l~g~iP 813 (920)
.+.+|......|
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888887766554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=5.3e-09 Score=117.61 Aligned_cols=248 Identities=26% Similarity=0.255 Sum_probs=146.5
Q ss_pred hhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCchhhhcccccceeccCCCccCCCCCchhhccCCCCC
Q 048289 393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFPDFLRTQHRLQILDLSDNQIRGGIPNWIWNVGKDTL 472 (920)
Q Consensus 393 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L 472 (920)
..+..++.+.+..|.+.. .......+.+|+.+++.+|.+..+...+..+++|++|++++|.|+...+-. .+..|
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L 142 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLL 142 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccch
Confidence 455666666677776653 122244566777777777777766665666666777777777666443322 33445
Q ss_pred cEEECCCCcCcCccCCCCcccceEecccCcCCCCCCCCCCCCceEEecCceecccCc-ccccCCCCcCeEeCCCCcCCCc
Q 048289 473 NHLNLSHNFLTGIELLPWKNLRYLDLRSNSLKGSIPFLPPSLNFISVSNNKLSGEIP-LSFCNMSSIFYVNLSNNSLNGM 551 (920)
Q Consensus 473 ~~L~Ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ 551 (920)
+.|++++|.|+.+.... .+..|+.+++++|.+...-+ . ...+.+++.+++++|.+...
T Consensus 143 ~~L~l~~N~i~~~~~~~--------------------~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 143 KELNLSGNLISDISGLE--------------------SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred hhheeccCcchhccCCc--------------------cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 56666666655554322 13455555555555554333 2 45666777777777776522
Q ss_pred Ccccccccc-cceeecCCCcccccCCccccCCC--cccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhc
Q 048289 552 IPPCLANSS-LWFLDMRMNNFHGSIPQTFSKGS--RLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLG 628 (920)
Q Consensus 552 ~p~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 628 (920)
..+.... +..+++..|.++...+. ..+. +|+.+++++|++. ..+..+..+..+..|++.+|++...- .+.
T Consensus 202 --~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~ 274 (414)
T KOG0531|consen 202 --EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLE 274 (414)
T ss_pred --cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--ccc
Confidence 2222222 44557777777644322 1222 3788888888887 33356777788888888888887442 244
Q ss_pred CCCCCCEEEccCceeecccCC--CcccCCCCCCcEEEccCCcCcCCCc
Q 048289 629 ALSELQVLILRSNRFHGPITY--SVTRFPFPKLRILDLSNNEFTGVLP 674 (920)
Q Consensus 629 ~l~~L~~L~L~~N~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p 674 (920)
..+.+..+....|.+...... .......+.++.+.+..|+.....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 556666777777766532211 1112346778888888888776554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.2e-10 Score=111.96 Aligned_cols=135 Identities=26% Similarity=0.261 Sum_probs=101.4
Q ss_pred CCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCCCCCCCCchHHHHHhcCCCC
Q 048289 78 PHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNSQLGLDTPVLKALVQNLNEL 157 (920)
Q Consensus 78 ~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L 157 (920)
+.|++||||...++...+...++.|.+|+.|.|.++++.+.+...+.+-.+|+.||++.+.. +...++.-.+.+|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhH
Confidence 35999999998887654555578899999999999999988888899999999999999854 3456777889999999
Q ss_pred CEEEcCCCCCCCCcchh-ccC-CCCCCEEEccCCcCC--C-CCCcccCCCCCCCEEEccCCC
Q 048289 158 QELVLNSVDMSYEVPSF-LTN-LSSLTSLDLGNCGLQ--G-SIPENIFRLPNLQNLILSYNK 214 (920)
Q Consensus 158 ~~L~L~~~~~~~~~~~~-l~~-l~~L~~L~Ls~n~l~--~-~~~~~l~~l~~L~~L~L~~n~ 214 (920)
.+|++++|......... +.. -++|+.|+++++.-. . .+..-..++++|.+|||++|.
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 99999999876544322 233 267888888887421 1 111223567778888887773
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.9e-09 Score=103.23 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCCCCCCcchhccCCCCCCEEEccCCcCCCCC--CcccCCCCC
Q 048289 127 SKLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVDMSYEVPSFLTNLSSLTSLDLGNCGLQGSI--PENIFRLPN 204 (920)
Q Consensus 127 ~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~ 204 (920)
++||+||||...++ ...+...+..|.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+.--... .--+.+|+.
T Consensus 185 sRlq~lDLS~s~it---~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT---VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhhee---HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 35888888887554 3677778888888999999888888888888888888888888877532121 122456778
Q ss_pred CCEEEccCCC
Q 048289 205 LQNLILSYNK 214 (920)
Q Consensus 205 L~~L~L~~n~ 214 (920)
|..|++++|.
T Consensus 262 L~~LNlsWc~ 271 (419)
T KOG2120|consen 262 LDELNLSWCF 271 (419)
T ss_pred HhhcCchHhh
Confidence 8888888873
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.19 E-value=5.1e-07 Score=64.56 Aligned_cols=35 Identities=43% Similarity=0.899 Sum_probs=25.2
Q ss_pred CcccccccCccCCCCCCCCCcccCCCCcccCCCCCC--CCCccccceEec
Q 048289 1 MLLQFKQLFSFETRQPSGCGRLQSDSYSKMISWKEE--KDCCSWDGVTCD 48 (920)
Q Consensus 1 ~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~--~~~c~w~gv~c~ 48 (920)
||++||+++..++. +.+.+|+.. .+||.|.||+|+
T Consensus 7 aLl~~k~~l~~~~~-------------~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 7 ALLAFKKSLNNDPS-------------GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHCTT-SC--------------CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHhcccccC-------------cccccCCCcCCCCCeeeccEEeC
Confidence 68999999985332 389999876 799999999996
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=2.2e-07 Score=81.62 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=56.0
Q ss_pred ccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccC
Q 048289 726 FTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQ 805 (920)
Q Consensus 726 l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~ 805 (920)
++.++|++|.|....+..-...+..+.|+|++|.|+. +|.++..++.|+.|+++.|.+. ..|+.+..|.+|.+||..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 4566777777764333323334466777777777763 4666777777777777777776 3455555677777777777
Q ss_pred CcccCCCCCC
Q 048289 806 NQLVGPIPQG 815 (920)
Q Consensus 806 N~l~g~iP~~ 815 (920)
|.+. +||..
T Consensus 133 na~~-eid~d 141 (177)
T KOG4579|consen 133 NARA-EIDVD 141 (177)
T ss_pred Cccc-cCcHH
Confidence 7665 56654
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=1.6e-07 Score=97.87 Aligned_cols=277 Identities=18% Similarity=0.156 Sum_probs=114.9
Q ss_pred CCCEEEcCCCCCCCCCCchHHHHHhcCCCCCEEEcCCCC-CCCCcchhcc-CCCCCCEEEccCCc-CCCCCCcc-cCCCC
Q 048289 128 KLVSLDLSGNSQLGLDTPVLKALVQNLNELQELVLNSVD-MSYEVPSFLT-NLSSLTSLDLGNCG-LQGSIPEN-IFRLP 203 (920)
Q Consensus 128 ~L~~L~Ls~n~~~~~~~~~l~~~~~~l~~L~~L~L~~~~-~~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~ 203 (920)
.|+.|.+++++ .+.+..+.....+++++++|.+.+|. ++......++ .+++|++|++..|. ++...-.. ...++
T Consensus 139 ~lk~LSlrG~r--~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCR--AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccc--cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 45555555552 23344455555555566655555553 2222222232 35566666665532 22221121 12466
Q ss_pred CCCEEEccCCCCCCcCC--CCcCCCCCCCEEEccCCcCccc--ccccccCCCCCCEEeCcCCc-CCccCc-ccccCCCCC
Q 048289 204 NLQNLILSYNKNLTSVF--PKVNWSSPLRFMDLYGCNFMGS--IPASLGNLSQLTYLDLSYNN-FSGHIP-STLSNLQQL 277 (920)
Q Consensus 204 ~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L 277 (920)
+|++|+++++..+.+.- +-...+..++.+.+.+|.-.+. +-..-+.+..+..+++..+. +++..- ..-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 67777777665444311 1233344455554444422110 00011233334444444432 221110 011234556
Q ss_pred CEEEccCCcCccc-chhhh-hcCCCCCEEECcCCCC-CCcccccc-cCCCcCceeeccCcccc--ccCCccccCCCCCCE
Q 048289 278 RHLDLSNNKFTGQ-IPCIF-ANLTQLSFLDFSNNQL-NGPISSSV-SRLHSLVTIYLSYNSLN--GTIPSGLFTSPLLES 351 (920)
Q Consensus 278 ~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~ 351 (920)
+.|+.+++...+. .-..+ .+..+|+.+.++.++- +...-..+ .+++.|+.+++..+... +.+...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 6666665543221 11122 2455666666666542 11111111 23455555555554332 111122223455555
Q ss_pred EEccCCCCC-CCchhhh----hcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCC
Q 048289 352 IDLRNNQLT-GSISNSI----SELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHN 406 (920)
Q Consensus 352 L~L~~n~l~-~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 406 (920)
+.++++... +.....+ .....|..+.+++++.+.+.....+..+++|+.+++-++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 555555322 1100111 123345555555555444444444444444444444433
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=6.4e-07 Score=87.90 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCCCCEEECCCCCCCCC---CCCCcCCCCCCCCEEeCCCCC---CcccCC-------ccccCCCCCCEEEcCCCCCCCCC
Q 048289 77 LPHLQILNLAFNDFNYS---YISPGFTRFPNLAHLNLSVSS---FSGQIP-------AEISHLSKLVSLDLSGNSQLGLD 143 (920)
Q Consensus 77 l~~L~~L~Ls~~~~~~~---~i~~~~~~l~~L~~L~Ls~n~---~~~~~p-------~~l~~l~~L~~L~Ls~n~~~~~~ 143 (920)
+..+..+|||+|.|... .+...+.+-++|+..+++.-. ..+.++ +.+-+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 44455555555554332 122334555666666665421 112222 23456677777777777655444
Q ss_pred CchHHHHHhcCCCCCEEEcCCCCC
Q 048289 144 TPVLKALVQNLNELQELVLNSVDM 167 (920)
Q Consensus 144 ~~~l~~~~~~l~~L~~L~L~~~~~ 167 (920)
...+...+++-+.|.+|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 455555666666666666666654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.09 E-value=2.4e-07 Score=102.55 Aligned_cols=179 Identities=30% Similarity=0.360 Sum_probs=119.9
Q ss_pred CcCCCCCCCEEEccCCcCcccccccccCC-CCCCEEeCcCCcCC----------ccCcccccCCCCCCEEEccCCcCccc
Q 048289 222 KVNWSSPLRFMDLYGCNFMGSIPASLGNL-SQLTYLDLSYNNFS----------GHIPSTLSNLQQLRHLDLSNNKFTGQ 290 (920)
Q Consensus 222 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~L~~n~l~~~ 290 (920)
.+..+.+|++|.+.+|.+... ..+..+ .+|++|--.+ .+. |.+..++ ....|.+.+.+.|.+. .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-h
Confidence 667778899999999887641 111111 2333332221 111 1111111 1235777778888877 5
Q ss_pred chhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcC
Q 048289 291 IPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISEL 370 (920)
Q Consensus 291 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 370 (920)
...++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+. .+|..-..-.+|..|.+++|.++.. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhh
Confidence 566777788888899999888754 36778888899999988886 4443222223488888888887743 346778
Q ss_pred CCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCcccc
Q 048289 371 VNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSL 410 (920)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 410 (920)
.+|..||+++|-+.+.-....+..+..|+.|+|.+|++..
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888888888888877777777888888888888887753
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=3.8e-07 Score=101.05 Aligned_cols=200 Identities=29% Similarity=0.290 Sum_probs=126.4
Q ss_pred CCCCEEEccCCcCcccc-cccccCCCCCCEEeCcCCcCCccCcccccCC-CCCCEEEccCCcCcccchhhhh--------
Q 048289 227 SPLRFMDLYGCNFMGSI-PASLGNLSQLTYLDLSYNNFSGHIPSTLSNL-QQLRHLDLSNNKFTGQIPCIFA-------- 296 (920)
Q Consensus 227 ~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~-------- 296 (920)
++++++.+-...-.+.. |-.+..+..|++|.+.++.+.. ...+..+ ..|++|.-. |.+. .+...|.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~-Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLD-ALRHVFASCGGDISN 159 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHH-HHHHHHHHhcccccc
Confidence 34444444333222222 4556677788888888887763 1222222 234444322 1111 0111111
Q ss_pred --cCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 048289 297 --NLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLI 374 (920)
Q Consensus 297 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 374 (920)
...+|...++++|.+. .+..++.-++.|+.|+|++|+++.. ..+..++.|++|||+.|.+....--....+. |+
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-he
Confidence 1135777788888876 4566777788899999999988733 3677888999999999988744333334444 88
Q ss_pred EEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc
Q 048289 375 DLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP 437 (920)
Q Consensus 375 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp 437 (920)
.|.+++|.++ ....+.++++|+.||+++|-+....-....+.+..|+.|.+.+|.+-.-|
T Consensus 236 ~L~lrnN~l~---tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 236 LLNLRNNALT---TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred eeeecccHHH---hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999998876 34456788888889999888876666666666777788888888765433
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=2.2e-07 Score=96.88 Aligned_cols=278 Identities=23% Similarity=0.175 Sum_probs=126.7
Q ss_pred CCCEEECCCCCCCC-CCCCCcCCCCCCCCEEeCCCCC-CcccCCccc-cCCCCCCEEEcCCCCCCCCCCchHHHHHhcCC
Q 048289 79 HLQILNLAFNDFNY-SYISPGFTRFPNLAHLNLSVSS-FSGQIPAEI-SHLSKLVSLDLSGNSQLGLDTPVLKALVQNLN 155 (920)
Q Consensus 79 ~L~~L~Ls~~~~~~-~~i~~~~~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~Ls~n~~~~~~~~~l~~~~~~l~ 155 (920)
.|+.|.++++.-.+ ..+.....+++++++|++.++. +++..-.++ ..+++|++|++..|. .+.+..+......|+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHHHHHHHHHHhhh
Confidence 45555555553211 1122233455666666555553 222111122 235566666666542 122234444555566
Q ss_pred CCCEEEcCCCC-CCCCcch-hccCCCCCCEEEccCCcCCCC--CCcccCCCCCCCEEEccCCCCCCcCCC--CcCCCCCC
Q 048289 156 ELQELVLNSVD-MSYEVPS-FLTNLSSLTSLDLGNCGLQGS--IPENIFRLPNLQNLILSYNKNLTSVFP--KVNWSSPL 229 (920)
Q Consensus 156 ~L~~L~L~~~~-~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~~l~~L 229 (920)
+|++|++++|. +++.... .+.++..++.+.+.+|.-.+. +-..-+.+..+.++++..|..++..-- .-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 66666666653 2221111 223344455554444421100 000012233344444444433322211 12234555
Q ss_pred CEEEccCCcCccc-ccccc-cCCCCCCEEeCcCCc-CCccCcccc-cCCCCCCEEEccCCcCc--ccchhhhhcCCCCCE
Q 048289 230 RFMDLYGCNFMGS-IPASL-GNLSQLTYLDLSYNN-FSGHIPSTL-SNLQQLRHLDLSNNKFT--GQIPCIFANLTQLSF 303 (920)
Q Consensus 230 ~~L~L~~n~~~~~-~~~~l-~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~ 303 (920)
++++.+++...+. .-.++ .++.+|+.|.++.++ ++..--..+ .+++.|+.+++..+... +.+...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 6666655543221 11122 355666666666654 222111112 24566666666666543 112222235667777
Q ss_pred EECcCCCCCCcc-----cccccCCCcCceeeccCcccc-ccCCccccCCCCCCEEEccCCC
Q 048289 304 LDFSNNQLNGPI-----SSSVSRLHSLVTIYLSYNSLN-GTIPSGLFTSPLLESIDLRNNQ 358 (920)
Q Consensus 304 L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~ 358 (920)
+.++.+...... ...-..+..|..+.++++... ...-..+..+++|+.+++-+++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 777766443211 112234566777777777543 2233445567788888887775
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=2.6e-06 Score=83.70 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=20.9
Q ss_pred CCCCCCCEEeCCCCCCcccCCcc----ccCCCCCCEEEcCCC
Q 048289 100 TRFPNLAHLNLSVSSFSGQIPAE----ISHLSKLVSLDLSGN 137 (920)
Q Consensus 100 ~~l~~L~~L~Ls~n~~~~~~p~~----l~~l~~L~~L~Ls~n 137 (920)
..+..+..++||+|.|....... |.+-.+|+..+++.-
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ 68 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA 68 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence 34566677777777665433222 333456666666543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=5.9e-06 Score=82.38 Aligned_cols=65 Identities=25% Similarity=0.294 Sum_probs=38.3
Q ss_pred hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc--hhhhcccccceeccCCCccCC
Q 048289 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP--DFLRTQHRLQILDLSDNQIRG 458 (920)
Q Consensus 394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp--~~l~~~~~L~~L~Ls~n~l~~ 458 (920)
-++++..+-+..|++...........+|.+.-|++..+++.... +.+..++.|..|.++++.+.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 34666666666666655554555555666666666666665443 445556666666666665543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=4.6e-06 Score=83.12 Aligned_cols=108 Identities=24% Similarity=0.302 Sum_probs=58.6
Q ss_pred CCCCEEEccCCcCccc--chhhhhcCCCCCEEECcCCCCCCc--ccccccCCCcCceeeccCccccccCCccccCCCCCC
Q 048289 275 QQLRHLDLSNNKFTGQ--IPCIFANLTQLSFLDFSNNQLNGP--ISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLE 350 (920)
Q Consensus 275 ~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 350 (920)
.-++.|.+.++.+... ....-..++.++.+++.+|.++.. +...+.++|.|+.|+++.|++...|...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3444555556655421 111122456777788888877642 334456677777777777776643322213445666
Q ss_pred EEEccCCCCCCC-chhhhhcCCCCCEEEccCCc
Q 048289 351 SIDLRNNQLTGS-ISNSISELVNLIDLSLSSNN 382 (920)
Q Consensus 351 ~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~ 382 (920)
.|-|.+..+.-. ....+..+|.++.|.++.|.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 666666655422 22234455556666665553
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=2.1e-06 Score=75.69 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeeccCCcccC
Q 048289 749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNLSQNQLVG 810 (920)
Q Consensus 749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 810 (920)
.|+..+|++|.+....+.--...+.++.|+|++|.|+ .+|..++.++.|+.+|++.|++..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence 3344455555554332222222334555555555555 344445555555555555555543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=6.1e-05 Score=81.24 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred ccCCCcccEEEccCCccccccCccccCCCCCcEEECCCCcccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCC
Q 048289 579 FSKGSRLTILNLNDNQLEGSVPLSLVNCSFLEVLDVGNNRINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPK 658 (920)
Q Consensus 579 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 658 (920)
+..+.+++.|++++|.++ .+| .+ -++|++|.+++|.--..+|..+ .++|+.|++++|.....+| ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cc
Confidence 344678999999999887 456 22 2469999998865444666655 3578899998884322222 45
Q ss_pred CcEEEccCCcC
Q 048289 659 LRILDLSNNEF 669 (920)
Q Consensus 659 L~~L~Ls~N~l 669 (920)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77788776654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.68 E-value=4.4e-05 Score=54.61 Aligned_cols=36 Identities=31% Similarity=0.546 Sum_probs=20.2
Q ss_pred cccEEEcCCCcCCCCchhhhhccCCCceEeccCcccc
Q 048289 725 IFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT 761 (920)
Q Consensus 725 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 761 (920)
+|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3556666666666 34555666666666666666655
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=2.8e-05 Score=55.64 Aligned_cols=36 Identities=42% Similarity=0.719 Sum_probs=23.2
Q ss_pred CCceEeccCccccCCcCcccccccCCccccCCCCccc
Q 048289 749 SLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVA 785 (920)
Q Consensus 749 ~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~ 785 (920)
+|++|++++|+|+. +|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 56777777777763 4555677777777777777666
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00019 Score=77.58 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=25.8
Q ss_pred hcCCCceEEcCCCccccCccCCCCCCCCcCceEeeecc-CCcCCchhhhcccccceeccCCC
Q 048289 394 ELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSC-NISEFPDFLRTQHRLQILDLSDN 454 (920)
Q Consensus 394 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~lp~~l~~~~~L~~L~Ls~n 454 (920)
.+.+++.|++++|.++... .-.++|++|.+++| .++.+|+.+. ++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 3566666666666543321 11234555655554 3344444331 34455555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00017 Score=68.45 Aligned_cols=104 Identities=25% Similarity=0.191 Sum_probs=59.2
Q ss_pred CEEECcCCCCCCccccccc-CCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccC
Q 048289 302 SFLDFSNNQLNGPISSSVS-RLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSS 380 (920)
Q Consensus 302 ~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 380 (920)
+.+++.+.++..+.. ++ .......+|+++|.+. -...+..++.|.+|.+.+|+|+.+.|.--.-+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 445555555442211 11 1234566777777664 123455666777777777777765555445556677777777
Q ss_pred CcCCCcchhhhhhhcCCCceEEcCCCccc
Q 048289 381 NNLSGNVELYMFAELKNLLGLDLSHNSLS 409 (920)
Q Consensus 381 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 409 (920)
|.+....+...+..|++|++|.+-+|+++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchh
Confidence 76665445555555566666666555554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00032 Score=66.68 Aligned_cols=83 Identities=23% Similarity=0.272 Sum_probs=47.7
Q ss_pred CCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCch-hhhhcCCCCCEEEc
Q 048289 300 QLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSIS-NSISELVNLIDLSL 378 (920)
Q Consensus 300 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L 378 (920)
+...+++++|.+... ..|..++.|..|.+.+|.++..-|.-...+++|+.|.|.+|.+..... ..+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455666666666422 345566666666666666664444444445666666666666543211 23455666666666
Q ss_pred cCCcCC
Q 048289 379 SSNNLS 384 (920)
Q Consensus 379 ~~n~l~ 384 (920)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=9.8e-05 Score=86.81 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=79.9
Q ss_pred CCCCEEEcCCCCCCCCCCchHHH-HHhcCCCCCEEEcCCCCCCCC-cchhccCCCCCCEEEccCCcCCCCCCcccCCCCC
Q 048289 127 SKLVSLDLSGNSQLGLDTPVLKA-LVQNLNELQELVLNSVDMSYE-VPSFLTNLSSLTSLDLGNCGLQGSIPENIFRLPN 204 (920)
Q Consensus 127 ~~L~~L~Ls~n~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 204 (920)
.+|++||+++..... ..++. ....+|.|+.|.+.+-.+... .-....++++|..||+|+++++.. ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s---~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFS---NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhh---ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 456666666643321 22332 233356666666666544222 223344566666666666666532 45666666
Q ss_pred CCEEEccCCCCCCc--CCCCcCCCCCCCEEEccCCcCcccc------cccccCCCCCCEEeCcCCcCCccCcccc-cCCC
Q 048289 205 LQNLILSYNKNLTS--VFPKVNWSSPLRFMDLYGCNFMGSI------PASLGNLSQLTYLDLSYNNFSGHIPSTL-SNLQ 275 (920)
Q Consensus 205 L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~------~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~ 275 (920)
|++|.+.+- .+.. .+..+.++++|++||+|........ -+.-..+|+|+.||.+++.+.+.+-+.+ ..-+
T Consensus 197 Lq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 666666544 2222 1225566677777777665433211 1223457899999999888775433332 2344
Q ss_pred CCCEEEc
Q 048289 276 QLRHLDL 282 (920)
Q Consensus 276 ~L~~L~L 282 (920)
+|+.+..
T Consensus 276 ~L~~i~~ 282 (699)
T KOG3665|consen 276 NLQQIAA 282 (699)
T ss_pred cHhhhhh
Confidence 4544433
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=0.00017 Score=84.91 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=81.8
Q ss_pred CCCCCEEEcCCCCC-CCCcchhccC-CCCCCEEEccCCcCCCC-CCcccCCCCCCCEEEccCCCCCCcCCCCcCCCCCCC
Q 048289 154 LNELQELVLNSVDM-SYEVPSFLTN-LSSLTSLDLGNCGLQGS-IPENIFRLPNLQNLILSYNKNLTSVFPKVNWSSPLR 230 (920)
Q Consensus 154 l~~L~~L~L~~~~~-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 230 (920)
-.+|++|++++... +..-|..++. +|+|+.|.+.+-.+... +.....++++|..||+++. +++.. ..++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 35677888777543 2233444443 68888888877655422 2223356778888888776 33322 4567777777
Q ss_pred EEEccCCcCcc-cccccccCCCCCCEEeCcCCcCCccC--c----ccccCCCCCCEEEccCCcCcccch
Q 048289 231 FMDLYGCNFMG-SIPASLGNLSQLTYLDLSYNNFSGHI--P----STLSNLQQLRHLDLSNNKFTGQIP 292 (920)
Q Consensus 231 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p 292 (920)
+|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.++..+...+-
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 77777766653 22234667788888888775443211 1 111246788888888777664433
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0028 Score=58.33 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=29.2
Q ss_pred ccCCCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCc
Q 048289 247 LGNLSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLV 326 (920)
Q Consensus 247 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 326 (920)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44444555555443 233333344444445555555443 3323333444444455555533 22222233444444444
Q ss_pred eeecc
Q 048289 327 TIYLS 331 (920)
Q Consensus 327 ~L~L~ 331 (920)
.+++.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 44443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.74 E-value=0.0036 Score=57.62 Aligned_cols=123 Identities=25% Similarity=0.324 Sum_probs=63.6
Q ss_pred ccccCCCCCCEEEccCCcCcccchhhhhcCCCCCEEECcCCCCCCcccccccCCCcCceeeccCccccccCCccccCCCC
Q 048289 269 STLSNLQQLRHLDLSNNKFTGQIPCIFANLTQLSFLDFSNNQLNGPISSSVSRLHSLVTIYLSYNSLNGTIPSGLFTSPL 348 (920)
Q Consensus 269 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 348 (920)
..|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +......+|..+++++.+.+.. .+.......+..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4577788888888875 455555667888888888888775 6656667788887888888865 333233344555788
Q ss_pred CCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCC
Q 048289 349 LESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNL 398 (920)
Q Consensus 349 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 398 (920)
|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 888888665 544455566666 777777765 222 3455666666555
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.04 E-value=0.0045 Score=61.77 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc----hhhhcccccceecc
Q 048289 396 KNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP----DFLRTQHRLQILDL 451 (920)
Q Consensus 396 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp----~~l~~~~~L~~L~L 451 (920)
++|+++++++|++.....+.....+++|..|++.+|..+.+. ..+.-+++|++||-
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 444444444444443333333344455555666665554432 23444555555543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.00046 Score=68.62 Aligned_cols=85 Identities=24% Similarity=0.202 Sum_probs=60.5
Q ss_pred CCcCceeeccCccccccCCccccCCCCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceE
Q 048289 322 LHSLVTIYLSYNSLNGTIPSGLFTSPLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGL 401 (920)
Q Consensus 322 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 401 (920)
+.+.+.|++.+|.+.+. .....++.|+.|.|+-|.|+.. ..+..|++|++|+|..|.|........+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455566666665422 2234567788888888877754 3477888888888888888876777788888888888
Q ss_pred EcCCCcccc
Q 048289 402 DLSHNSLSL 410 (920)
Q Consensus 402 ~Ls~n~l~~ 410 (920)
.|..|...+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 888887644
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.80 E-value=0.0023 Score=74.14 Aligned_cols=110 Identities=28% Similarity=0.251 Sum_probs=47.4
Q ss_pred CCCCCEEEccCCCCCCc--CCCCcCCCCCCCEEEccCC-cCccccc----ccccCCCCCCEEeCcCCc-CCccCccccc-
Q 048289 202 LPNLQNLILSYNKNLTS--VFPKVNWSSPLRFMDLYGC-NFMGSIP----ASLGNLSQLTYLDLSYNN-FSGHIPSTLS- 272 (920)
Q Consensus 202 l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~p~~l~- 272 (920)
++.|+.|.+..+..+.. ..+....++.|+.|+++++ ......+ .....+.+|+.|+++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666543332 1234445556666666542 1111111 122334555555555554 3322222222
Q ss_pred CCCCCCEEEccCCc-Cccc-chhhhhcCCCCCEEECcCCCC
Q 048289 273 NLQQLRHLDLSNNK-FTGQ-IPCIFANLTQLSFLDFSNNQL 311 (920)
Q Consensus 273 ~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l 311 (920)
.+++|++|.+.+|. ++.. +......++.|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 24555555544444 2211 112223344555555554443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.79 E-value=0.0017 Score=75.39 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=47.0
Q ss_pred CCCCCEEEccCCcCCCC--CCcccCCCCCCCEEEccCCCCCCcCC-----CCcCCCCCCCEEEccCCc-Cccccccccc-
Q 048289 178 LSSLTSLDLGNCGLQGS--IPENIFRLPNLQNLILSYNKNLTSVF-----PKVNWSSPLRFMDLYGCN-FMGSIPASLG- 248 (920)
Q Consensus 178 l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~-~~~~~~~~l~- 248 (920)
++.|+.|.+..+.-... .-.....+++|+.|+++++....... .....+++|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555532212 12233445566666655420111110 122334555566665555 3322222222
Q ss_pred CCCCCCEEeCcCCc-CCccC-cccccCCCCCCEEEccCCcC
Q 048289 249 NLSQLTYLDLSYNN-FSGHI-PSTLSNLQQLRHLDLSNNKF 287 (920)
Q Consensus 249 ~l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l 287 (920)
.+++|++|.+.++. +++.- -.....++.|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25556666555444 33221 11123455566666665544
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.56 E-value=0.0094 Score=59.56 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=28.2
Q ss_pred CCCCCcEEECCCC--cccccCchhhcCCCCCCEEEccCceeecccCCCcccCCCCCCcEEEccCCcCcC
Q 048289 605 NCSFLEVLDVGNN--RINGTFPAWLGALSELQVLILRSNRFHGPITYSVTRFPFPKLRILDLSNNEFTG 671 (920)
Q Consensus 605 ~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 671 (920)
.+++|+.|.++.| ++.+-++.....+++|++|++++|++... ..--....+.+|..||+.+|.-+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccchhhhhcchhhhhcccCCccc
Confidence 3344444444444 33333333333444555555555544320 000001234456666666665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0037 Score=37.12 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=5.0
Q ss_pred CccccCCCCccc
Q 048289 774 LESLDLSSNKVA 785 (920)
Q Consensus 774 L~~L~Ls~N~l~ 785 (920)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.008 Score=35.66 Aligned_cols=19 Identities=47% Similarity=0.585 Sum_probs=9.1
Q ss_pred CceEeccCccccCCcCcccc
Q 048289 750 LKGLNFSHNKLTGLIPYSLE 769 (920)
Q Consensus 750 L~~L~Ls~N~l~~~ip~~~~ 769 (920)
|+.|||++|+|+ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.0036 Score=62.54 Aligned_cols=67 Identities=25% Similarity=0.243 Sum_probs=37.2
Q ss_pred hhcCCCceEEcCCCccccCccCCCCCCCCcCceEeeeccCCcCCc--hhhhcccccceeccCCCccCCCCCc
Q 048289 393 AELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSMLSLSSCNISEFP--DFLRTQHRLQILDLSDNQIRGGIPN 462 (920)
Q Consensus 393 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~~~ 462 (920)
..++.|+.|.|+-|+|+. ......|.+|++|++..|.|..+. ..+.++++|+.|.|..|...+.-+.
T Consensus 38 ~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccch
Confidence 344444444444444422 222334555555555555555554 4567777888888887777665543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.05 E-value=0.0024 Score=72.09 Aligned_cols=60 Identities=30% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCEEEccCCcCccc----chhhhhcC-CCCCEEECcCCCCCCccc----ccccCCCcCceeeccCcccc
Q 048289 277 LRHLDLSNNKFTGQ----IPCIFANL-TQLSFLDFSNNQLNGPIS----SSVSRLHSLVTIYLSYNSLN 336 (920)
Q Consensus 277 L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~ 336 (920)
+..|++..|.+.+. ....+..+ ..+++++++.|.++.... ..+..++.++++.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554422 12223333 455666666666654322 23344556666666666654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.58 E-value=0.002 Score=72.70 Aligned_cols=66 Identities=35% Similarity=0.424 Sum_probs=37.9
Q ss_pred cCCCC-CCEEeCcCCcCCcc----CcccccCC-CCCCEEEccCCcCccc----chhhhhcCCCCCEEECcCCCCCC
Q 048289 248 GNLSQ-LTYLDLSYNNFSGH----IPSTLSNL-QQLRHLDLSNNKFTGQ----IPCIFANLTQLSFLDFSNNQLNG 313 (920)
Q Consensus 248 ~~l~~-L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 313 (920)
...+. +..+++..|.+.+. ....+..+ ..+++++++.|.++.. +...+..++.++.+.+++|.+..
T Consensus 229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33444 55566666665533 11223333 5567777777777643 33445566777777787777654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.15 E-value=0.028 Score=54.88 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=69.9
Q ss_pred ccccEEEcCCCcCCCCchhhhhccCCCceEeccCccccCCcCcccccccCCccccCCCCcccccCcccccCCCCCCeeec
Q 048289 724 NIFTTIDLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLTGLIPYSLENLTQLESLDLSSNKVAGEIPWQLTSLNFLQVLNL 803 (920)
Q Consensus 724 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 803 (920)
...+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..++.+..+..+++..|.++ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 45688999999987 34456777888999999999987 56889999999999999888887 67889999999999999
Q ss_pred cCCccc
Q 048289 804 SQNQLV 809 (920)
Q Consensus 804 s~N~l~ 809 (920)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988764
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.58 E-value=0.27 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=5.9
Q ss_pred cCceEeeeccCCcCC
Q 048289 422 YLSMLSLSSCNISEF 436 (920)
Q Consensus 422 ~L~~L~l~~~~l~~l 436 (920)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.35 E-value=0.017 Score=56.25 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=65.5
Q ss_pred CcEEEEECCCCCCcccCCCCCCccCCCCCCEEECCCCCCCCCCCCCcCCCCCCCCEEeCCCCCCcccCCccccCCCCCCE
Q 048289 52 GHVTGLDLSCSRLHGSIPSDSSLFSLPHLQILNLAFNDFNYSYISPGFTRFPNLAHLNLSVSSFSGQIPAEISHLSKLVS 131 (920)
Q Consensus 52 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~i~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 131 (920)
.+|+.||++.+.+... .. -+..++.|..||++.|++.. +|..++....++.+++..|..+ ..|.+++..+++++
T Consensus 42 kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 5788999988876532 22 46778888888999888765 7888888888888888888887 78888999999999
Q ss_pred EEcCCCCC
Q 048289 132 LDLSGNSQ 139 (920)
Q Consensus 132 L~Ls~n~~ 139 (920)
+++.+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888853
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.45 E-value=0.45 Score=29.42 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=5.4
Q ss_pred CCccccCCCCccc
Q 048289 773 QLESLDLSSNKVA 785 (920)
Q Consensus 773 ~L~~L~Ls~N~l~ 785 (920)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.45 E-value=0.45 Score=29.42 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=5.4
Q ss_pred CCccccCCCCccc
Q 048289 773 QLESLDLSSNKVA 785 (920)
Q Consensus 773 ~L~~L~Ls~N~l~ 785 (920)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.03 E-value=0.73 Score=28.45 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=13.2
Q ss_pred cCCCceEeccCccccCCcCccc
Q 048289 747 LNSLKGLNFSHNKLTGLIPYSL 768 (920)
Q Consensus 747 l~~L~~L~Ls~N~l~~~ip~~~ 768 (920)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3466777777777765544443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.03 E-value=0.73 Score=28.45 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=13.2
Q ss_pred cCCCceEeccCccccCCcCccc
Q 048289 747 LNSLKGLNFSHNKLTGLIPYSL 768 (920)
Q Consensus 747 l~~L~~L~Ls~N~l~~~ip~~~ 768 (920)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3466777777777765544443
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=83.63 E-value=6.8 Score=43.02 Aligned_cols=65 Identities=31% Similarity=0.267 Sum_probs=37.9
Q ss_pred hcccccceeccCCCccCCCCCchhhccCCCCCcEEECCCCcCcCccCC------CCcccceEecccCcCCCCCCC
Q 048289 441 RTQHRLQILDLSDNQIRGGIPNWIWNVGKDTLNHLNLSHNFLTGIELL------PWKNLRYLDLRSNSLKGSIPF 509 (920)
Q Consensus 441 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------~~~~L~~L~L~~n~l~~~~~~ 509 (920)
..-+.++++|++.|.+....|..+.....+ +.++.+.++.-... .-..+.+++++.|.....+|.
T Consensus 162 rpnpr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 162 RPNPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred CCcchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 344667888888888887777665432332 45555554433221 112466777777766666554
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=0.47 Score=45.83 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=18.5
Q ss_pred CCCEEeCCCCCCcccCCccccCCCCCCEEEcCCCC
Q 048289 104 NLAHLNLSVSSFSGQIPAEISHLSKLVSLDLSGNS 138 (920)
Q Consensus 104 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~ 138 (920)
.++.+|-+++.+..+--+.+..++.++.|.+.+|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 34555555555544434445555555666665553
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.54 E-value=0.38 Score=29.11 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=3.4
Q ss_pred CceEeccCccc
Q 048289 750 LKGLNFSHNKL 760 (920)
Q Consensus 750 L~~L~Ls~N~l 760 (920)
|++|+|++|+|
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33333333333
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.89 E-value=0.65 Score=44.90 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=48.4
Q ss_pred CCCCEEEccCCCCCCCchhhhhcCCCCCEEEccCCcCCCcchhhhhhhcCCCceEEcCCCccccCccCCCCCCCCcCceE
Q 048289 347 PLLESIDLRNNQLTGSISNSISELVNLIDLSLSSNNLSGNVELYMFAELKNLLGLDLSHNSLSLSTLLPVNSSFPYLSML 426 (920)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 426 (920)
..++.++-++..|..+.-+.+.+++.++.|.+.+|.--++- .+..+ ....++|+.|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~---~L~~l---------------------~~~~~~L~~L 156 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW---CLERL---------------------GGLAPSLQDL 156 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH---HHHHh---------------------cccccchhee
Confidence 45677777777777666667777777777777776533221 11111 1134556666
Q ss_pred eeecc-CCcCCc-hhhhcccccceeccCC
Q 048289 427 SLSSC-NISEFP-DFLRTQHRLQILDLSD 453 (920)
Q Consensus 427 ~l~~~-~l~~lp-~~l~~~~~L~~L~Ls~ 453 (920)
++++| .|++-. .++..+++|+.|.+.+
T Consensus 157 ~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 157 DLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred eccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 66655 444332 4566667777776654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.45 E-value=2.8 Score=25.99 Aligned_cols=14 Identities=64% Similarity=0.852 Sum_probs=8.7
Q ss_pred cCCccccCCCCccc
Q 048289 772 TQLESLDLSSNKVA 785 (920)
Q Consensus 772 ~~L~~L~Ls~N~l~ 785 (920)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.26 E-value=7.1 Score=24.63 Aligned_cols=12 Identities=50% Similarity=0.554 Sum_probs=6.3
Q ss_pred CCCEEEcCCCCC
Q 048289 128 KLVSLDLSGNSQ 139 (920)
Q Consensus 128 ~L~~L~Ls~n~~ 139 (920)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.55 E-value=8.4 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=11.1
Q ss_pred CcCceEeeeccCCcCCch
Q 048289 421 PYLSMLSLSSCNISEFPD 438 (920)
Q Consensus 421 ~~L~~L~l~~~~l~~lp~ 438 (920)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 346666666666666665
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.38 E-value=32 Score=38.11 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=31.2
Q ss_pred CCCCCEEeCcCCcCCccCcccccCCCCCCEEEccCCcCcccchhhhh---cCCCCCEEECcCCCCCCcccc
Q 048289 250 LSQLTYLDLSYNNFSGHIPSTLSNLQQLRHLDLSNNKFTGQIPCIFA---NLTQLSFLDFSNNQLNGPISS 317 (920)
Q Consensus 250 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~~~ 317 (920)
-+.+++++++.|.+....|-.+..-.. -+.++.|..+...-..+. .-..+.+++++.|.....+|.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 356777888888776655544432111 145555555422111110 012345555555555544443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.36 E-value=14 Score=41.56 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=18.3
Q ss_pred CCCcCceEeeeccCCcCC---chhhhcccccceeccCCC
Q 048289 419 SFPYLSMLSLSSCNISEF---PDFLRTQHRLQILDLSDN 454 (920)
Q Consensus 419 ~~~~L~~L~l~~~~l~~l---p~~l~~~~~L~~L~Ls~n 454 (920)
..|.+..+.+++|++..+ ...-...|.|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555544433 233344556666666666
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.37 E-value=40 Score=20.63 Aligned_cols=11 Identities=55% Similarity=0.558 Sum_probs=5.6
Q ss_pred CCCCEEEccCC
Q 048289 203 PNLQNLILSYN 213 (920)
Q Consensus 203 ~~L~~L~L~~n 213 (920)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=25.80 E-value=35 Score=29.17 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=9.0
Q ss_pred EEeeeheeehhhhhhhhhhh
Q 048289 866 MAVMGYGSGFVIGLSMGYSV 885 (920)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~ 885 (920)
++++++|..+++++++++++
T Consensus 68 iagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh
Confidence 34444444444544444444
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.11 E-value=48 Score=45.31 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=30.3
Q ss_pred eccCccccCCcCcccccccCCccccCCCCcccc
Q 048289 754 NFSHNKLTGLIPYSLENLTQLESLDLSSNKVAG 786 (920)
Q Consensus 754 ~Ls~N~l~~~ip~~~~~l~~L~~L~Ls~N~l~g 786 (920)
||++|+|+...+..|..|++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999999889999999999999999998874
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.01 E-value=44 Score=37.89 Aligned_cols=83 Identities=24% Similarity=0.179 Sum_probs=47.6
Q ss_pred CCCcccEEEccCCccccccC--ccccCCCCCcEEECCCCcccccCchhhcC--CCCCCEEEccCceeecccCCCc-----
Q 048289 581 KGSRLTILNLNDNQLEGSVP--LSLVNCSFLEVLDVGNNRINGTFPAWLGA--LSELQVLILRSNRFHGPITYSV----- 651 (920)
Q Consensus 581 ~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~~~~~----- 651 (920)
+.+.+..+.|++|++..... .--...++|..|+|++|...-....++.+ ...|++|-+.+|++........
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 45678888899998753221 11123578899999999332222233433 3457788888887765433211
Q ss_pred ccCCCCCCcEEE
Q 048289 652 TRFPFPKLRILD 663 (920)
Q Consensus 652 ~~~~l~~L~~L~ 663 (920)
....+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 011366666554
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.85 E-value=43 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=29.6
Q ss_pred EcCCCcCCCCchhhhhccCCCceEeccCcccc
Q 048289 730 DLSGNKFQGRIPEVVGKLNSLKGLNFSHNKLT 761 (920)
Q Consensus 730 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 761 (920)
||++|+|+...+..|..+.+|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999999985
Done!